|
Name |
Accession |
Description |
Interval |
E-value |
| Lebercilin |
pfam15619 |
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of ... |
154-346 |
3.43e-61 |
|
Ciliary protein causing Leber congenital amaurosis disease; Lebercilin is a family of eukaryotic ciliary proteins. Mutations in the gene, LCA5, are implicated in the disease Leber congenital amaurosis. In photoreceptors, lebercilin is uniquely localized at the cilium that bridges the inner and outer segments. Lebercilin functions as an integral element of selective protein transport through photoreceptor cilia. Lebercilin specifically interacts with the intraflagellar transport (IFT), and disruption of IFT can lead to Leber congenital amaurosis.
Pssm-ID: 464776 [Multi-domain] Cd Length: 193 Bit Score: 203.98 E-value: 3.43e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 154 VTKRMLSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQ 233
Cdd:pfam15619 1 VTQRVLSARLHKIKELQNELAELQSKLEELRKENRLLKRLQKRQEKALGKYEGTESELPQLIARHNEEVRVLRERLRRLQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 234 ENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMELSSGSFQRQLAN 313
Cdd:pfam15619 81 EKERDLERKLKEKEAELLRLRDQLKRLEKLSEDKNLAEREELQKKLEQLEAKLEDKDEKIQDLERKLELENKSFRRQLAA 160
|
170 180 190
....*....|....*....|....*....|...
gi 1207193302 314 ERRKTHDAQQEVKALQEEVERLCTKLKEKEREL 346
Cdd:pfam15619 161 EKKKHKEAQEEVKILQEEIERLQQKLKEKEREL 193
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
143-549 |
9.20e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 9.20e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 143 SKDAPSKDVDQVTKRMLSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNET 222
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEE 1429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 223 HVLRERLRRSQENQRTAERsLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMEl 302
Cdd:PTZ00121 1430 KKKADEAKKKAEEAKKADE-AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE- 1507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 303 ssgsfQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIY-ANRMHKASSRKEAENGSK---RKGFNITS 378
Cdd:PTZ00121 1508 -----AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKkAEELKKAEEKKKAEEAKKaeeDKNMALRK 1582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 379 TKAVQTEDRTSSLDFPSPPPALTNNLPPDDQTDDYLSLKDQQSRehRTRESKEWKIQEFWREREKERHMESAREQEKEKE 458
Cdd:PTZ00121 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK--KAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 459 TLHERERQTEllkDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREIQDYNQ 538
Cdd:PTZ00121 1661 IKAAEEAKKA---EEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKK 1737
|
410
....*....|.
gi 1207193302 539 ERVEEERQRKE 549
Cdd:PTZ00121 1738 EAEEDKKKAEE 1748
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
258-566 |
4.00e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 4.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 258 QKLQQLADDQNLGEREELSRKLIGTQSRL-QDSEHRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLC 336
Cdd:pfam17380 273 QLLHIVQHQKAVSERQQQEKFEKMEQERLrQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 337 TKLKEKERELD-------ARNIYANR-MHKASSRKEAENGSKRKGFNITSTKAVQTEDRTSSLdfpspppaltnnlppdd 408
Cdd:pfam17380 353 IRQEERKRELErirqeeiAMEISRMReLERLQMERQQKNERVRQELEAARKVKILEEERQRKI----------------- 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 409 qtddylslKDQQSREHRTRESKEWKIQEFWR--EREKERHMESAREQEKEKETLHERERQTEllKDVERQRLDQDLSSNE 486
Cdd:pfam17380 416 --------QQQKVEMEQIRAEQEEARQREVRrlEEERAREMERVRLEEQERQQQVERLRQQE--EERKRKKLELEKEKRD 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 487 KNfkgnrglnREEEDRRigmSVSQKEEEIQKQRELEEE-QQKVRNREIQDYNQERVEEERQRK-EQLLAKMREIDIQTQG 564
Cdd:pfam17380 486 RK--------RAEEQRR---KILEKELEERKQAMIEEErKRKLLEKEMEERQKAIYEEERRREaEEERRKQQEMEERRRI 554
|
..
gi 1207193302 565 QD 566
Cdd:pfam17380 555 QE 556
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
225-558 |
7.83e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 7.83e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 225 LRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRkligtQSRLQDSEHRVKELEKNMELSS 304
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE-----LARLEQDIARLEERRRELEERL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 305 GSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNiyANRMHKASSRKEAEngskrkgfnitstkavqt 384
Cdd:COG1196 319 EELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE--EALLEAEAELAEAE------------------ 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 385 edrtssldfpspppaltnnlppddqtDDYLSLKDQQSREHRTRESKEWKIQEfwREREKERHMESAREQEKEKETLHERE 464
Cdd:COG1196 379 --------------------------EELEELAEELLEALRAAAELAAQLEE--LEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 465 RQTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIgmSVSQKEEEIQKQRELEEEQQKVRNREIQDYNQERVEEE 544
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE--EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330
....*....|....
gi 1207193302 545 RQRKEQLLAKMREI 558
Cdd:COG1196 509 GVKAALLLAGLRGL 522
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-558 |
1.39e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 138 RSQSLSKDAPSKDVDQVTKRMLSARllKINELKNALSELRLHADELQR---ENRLLRQLQLRQEKALHRYNDTDSEISQL 214
Cdd:PTZ00121 1291 KADEAKKAEEKKKADEAKKKAEEAK--KADEAKKKAEEAKKKADAAKKkaeEAKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 215 LARHNNETHVLRERLRRSQENQRTAERS------LRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQD 288
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAkkkaeeDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 289 SEHRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNiYANRMHKASSRKEAENG 368
Cdd:PTZ00121 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKK-KADEAKKAEEAKKADEA 1527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 369 SKRKgfnitstkavqtEDRTSsldfpspppaltnnlppddqtddylslkDQQSREHRTRESKEWKIQEFWREREKERHME 448
Cdd:PTZ00121 1528 KKAE------------EAKKA----------------------------DEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 449 SAREQEKEKETlheRERQTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQREL-----EE 523
Cdd:PTZ00121 1568 EAKKAEEDKNM---ALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQlkkkeAE 1644
|
410 420 430
....*....|....*....|....*....|....*.
gi 1207193302 524 EQQKVRN-REIQDYNQERVEEERQRKEQLLAKMREI 558
Cdd:PTZ00121 1645 EKKKAEElKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
165-366 |
2.54e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 165 KINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 245 ERDAQLQRCRSQMQKLQQLADDQnLGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQLANERRKTHDAQQE 324
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEA-EEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAEELLEALRAAAELAAQ 401
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1207193302 325 VKALQEEVERLctkLKEKERELDARNIYANRMHKASSRKEAE 366
Cdd:COG1196 402 LEELEEAEEAL---LERLERLEEELEELEEALAELEEEEEEE 440
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
138-552 |
4.02e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.99 E-value: 4.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 138 RSQSLSKDAPSKDVDQVTKRMLSARllKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLAR 217
Cdd:PTZ00121 1367 EAAEKKKEEAKKKADAAKKKAEEKK--KADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 218 HNNETHVLRERLRRSQENQRTAERSLR----ERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRV 293
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKadeaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKA 1524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 294 KELEKNMELSSGSFQRQlANERRKTHDAQQEVKALQEEVERlctKLKEKERELDARNIYANRMHKASSRKEAENGSKRKG 373
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKK-AEEKKKADELKKAEELKKAEEKK---KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKL 1600
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 374 FNITSTKAVQTEDRTSSLDFPSPPPALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKI---QEFWREREKERHMESA 450
Cdd:PTZ00121 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIkaaEEAKKAEEDKKKAEEA 1680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 451 REQEKEKETLHERERQtellKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQRELE---EEQQK 527
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKK----EAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEakkDEEEK 1756
|
410 420
....*....|....*....|....*
gi 1207193302 528 VRNREIQDYNQERVEEERQRKEQLL 552
Cdd:PTZ00121 1757 KKIAHLKKEEEKKAEEIRKEKEAVI 1781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
165-349 |
4.94e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 4.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 165 KINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 245 ERDAQLQRCRSQMQKLQQLADDQnLGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQLANERRKTHDAQQE 324
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEA-EAELAEAEEELEELAEELLEALRAAAELAAQLE----ELEEAEEALLERLERLEEE 422
|
170 180
....*....|....*....|....*
gi 1207193302 325 VKALQEEVERLCTKLKEKERELDAR 349
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEALEEA 447
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
168-554 |
9.05e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 9.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 168 ELKNALSELRLHAD-----ELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRTAERS 242
Cdd:COG1196 221 ELKELEAELLLLKLreleaELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 243 LRERDAQLQRCRSQMQKLQQLADdqnlgEREELSRKLIGTQSRLQDSEHRVKELEKNMELSsgsfQRQLANERRKTHDAQ 322
Cdd:COG1196 301 EQDIARLEERRRELEERLEELEE-----ELAELEEELEELEEELEELEEELEEAEEELEEA----EAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 323 QEVKALQEEVERLctkLKEKERELDARNIYANRMHKASSRKEAENGSKRkgfnitstkavQTEDRTSSLdfpspppaltn 402
Cdd:COG1196 372 AELAEAEEELEEL---AEELLEALRAAAELAAQLEELEEAEEALLERLE-----------RLEEELEEL----------- 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 403 nlppDDQTDDYLSLKDQQSREHRTRESKEWKIQEfwREREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQDL 482
Cdd:COG1196 427 ----EEALAELEEEEEEEEEALEEAAEEEAELEE--EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1207193302 483 SSNEKNFKGNRGLNREEEDRRIGMSVSqkeEEIQKQRELEEEQQKVRNREIQDYNQERVEEERQRKEQLLAK 554
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVA---VLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAA 569
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-559 |
1.89e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 228 RLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQN----------LGEREELSRKLIGTQSRLQDSEHRVKELE 297
Cdd:TIGR02168 180 KLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAelrelelallVLRLEELREELEELQEELKEAEEELEELT 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 298 KNMELSSGSFQR---QLANERRKTHDAQQEVKALQEEVERLctklKEKERELDARNIYANRMHKASSRKEAENGSKRkgf 374
Cdd:TIGR02168 260 AELQELEEKLEElrlEVSELEEEIEELQKELYALANEISRL----EQQKQILRERLANLERQLEELEAQLEELESKL--- 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 375 NITSTKAVQTEDRTSSLdfpspppaltnnlppddqTDDYLSLKDQQSREHRTRESKEWKIQEFWREREKERhmeSAREQE 454
Cdd:TIGR02168 333 DELAEELAELEEKLEEL------------------KEELESLEAELEELEAELEELESRLEELEEQLETLR---SKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 455 KEKETLH--ERERQTELLKDVE--RQRLDQDLSSNEKNF-KGNRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVR 529
Cdd:TIGR02168 392 ELQIASLnnEIERLEARLERLEdrRERLQQEIEELLKKLeEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471
|
330 340 350
....*....|....*....|....*....|.
gi 1207193302 530 -NREIQDYNQERVEEERQRKEQLLAKMREID 559
Cdd:TIGR02168 472 eAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-572 |
3.45e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 3.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 228 RLRRSQENQRTAERSLRERDAQLQRCRSQMQKL---QQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMElss 304
Cdd:COG1196 180 KLEATEENLERLEDILGELERQLEPLERQAEKAeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELE--- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 305 gSFQRQLANERRKTHDAQQEVKALQEEVERLctklKEKERELDAR--NIYANRMHKASSRKEAENGSKRKGFNITSTKAV 382
Cdd:COG1196 257 -ELEAELAELEAELEELRLELEELELELEEA----QAEEYELLAElaRLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 383 QTEDRTSSLdfpspppALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHE 462
Cdd:COG1196 332 LEELEEELE-------ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 463 RERQTELLKDvERQRLDQDLSSNEKNFKGNRGLNREEEDRRIgmsvSQKEEEIQKQRELEEEQQKVRNREIQDYNQERVE 542
Cdd:COG1196 405 LEEAEEALLE-RLERLEEELEELEEALAELEEEEEEEEEALE----EAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
330 340 350
....*....|....*....|....*....|
gi 1207193302 543 EERQRKEQLLAKMREIDIQTQGQDSDFFSD 572
Cdd:COG1196 480 AELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
163-347 |
3.54e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 163 LLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLAR-------HNNETHVLRERLRRSQEN 235
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqkelyaLANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 236 QRTAERSLRERDAQLQRCRSQMQKLQQLADDQN------LGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgsfqr 309
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELAELEekleelKEELESLEAELEELEAELEELESRLEELEEQLE-------- 382
|
170 180 190
....*....|....*....|....*....|....*...
gi 1207193302 310 qlaNERRKTHDAQQEVKALQEEVERLCTKLKEKERELD 347
Cdd:TIGR02168 383 ---TLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
165-365 |
1.28e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 165 KINELKNALSELRLHADELQRENRLLRQLQLRQEKALHrynDTDSEISQLLARHNNETHVLRERLRRSQE--NQRTAERS 242
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQIS---ALRKDLARLEAEVEQLEERIAQLSKELTEleAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 243 -LRERDAQLQRCRSQMQKLQQLADDQNlGEREELSRKLIGTQSRLQDSE---HRVKELEKNMELSSGSFQRQLANERRKT 318
Cdd:TIGR02168 769 rLEEAEEELAEAEAEIEELEAQIEQLK-EELKALREALDELRAELTLLNeeaANLRERLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1207193302 319 HDAQQEVKALQEEVERLCTKLKEKERELDA----RNIYANRMHKASSRKEA 365
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEELIEELESELEAllneRASLEEALALLRSELEE 898
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
159-372 |
1.79e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 159 LSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRT 238
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 239 AERSLRERDAQLQRCRSQMQKLQQL--------ADDQNLGER-----EELSRKLIGTQSRLQDSEHRVKELEKNMELSSG 305
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQpplalllsPEDFLDAVRrlqylKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1207193302 306 SFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIYANRMHKASSRKEAENGSKRK 372
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
225-557 |
2.45e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.04 E-value: 2.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 225 LRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQD-----SEHRVKELEKN 299
Cdd:pfam02463 680 ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQkideeEEEEEKSRLKK 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 300 MELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIY-ANRMHKASSRKEAENGSKRKGFNITS 378
Cdd:pfam02463 760 EEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEeAELLEEEQLLIEQEEKIKEEELEELA 839
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 379 TKAVQTEDRTSSLDfpspppALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKIQEfwrEREKERHMESAREQEKEKE 458
Cdd:pfam02463 840 LELKEEQKLEKLAE------EELERLEEEITKEELLQELLLKEEELEEQKLKDELESK---EEKEKEEKKELEEESQKLN 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 459 TLHERERQTELLKDVERQRLDQDLSSNEKnfkgnrgLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREIQDYNQ 538
Cdd:pfam02463 911 LLEEKENEIEERIKEEAEILLKYEEEPEE-------LLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEF 983
|
330
....*....|....*....
gi 1207193302 539 ERVEEERQRKEQLLAKMRE 557
Cdd:pfam02463 984 EEKEERYNKDELEKERLEE 1002
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
148-355 |
4.29e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 148 SKDVDQVTKRMLSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYN-----------DTDSEISQLLA 216
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEqelaaleaelaELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 217 RHNNETHVLRERLRRSQENQRT--------------AERSL-------RERDAQLQRCRSQMQKLQQLADDQNlGEREEL 275
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQpplalllspedfldAVRRLqylkylaPARREQAEELRADLAELAALRAELE-AERAEL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 276 SRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIYANR 355
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLA----RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
198-348 |
4.98e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 4.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 198 EKALHRYNDTDSEISQL-LARHNNETHVLRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELS 276
Cdd:COG4913 265 AAARERLAELEYLRAALrLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLE 344
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1207193302 277 RKLIGTQSRLQDSEHRVKELEK-------NMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDA 348
Cdd:COG4913 345 REIERLERELEERERRRARLEAllaalglPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
159-558 |
5.69e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 5.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 159 LSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRT 238
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 239 AERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMELssgsfQRQLANERRKT 318
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEA-----ALEAALAAALQ 549
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 319 HDAQQEVKALQEEVERLCTKLKEKERELDARNIYANRmhkaSSRKEAENGSKRKGFNITSTKAVQTEDRTSsldfpsppp 398
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARA----ALAAALARGAIGAAVDLVASDLREADARYY--------- 616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 399 ALTNNLPPDDQTDDYLSLKDQQSREHRTRE---SKEWKIQEFW----REREKERHMESAREQEKEKETLHERERQTELLK 471
Cdd:COG1196 617 VLGDTLLGRTLVAARLEAALRRAVTLAGRLrevTLEGEGGSAGgsltGGSRRELLAALLEAEAELEELAERLAEEELELE 696
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 472 DVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIgmsvSQKEEEIQKQRELEEEQQKVRNREIQDYNQERVEEERQRKEQL 551
Cdd:COG1196 697 EALLAEEEEERELAEAEEERLEEELEEEALEEQ----LEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERL 772
|
....*..
gi 1207193302 552 LAKMREI 558
Cdd:COG1196 773 EREIEAL 779
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
227-558 |
1.21e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 227 ERLRRSQENQRTAERSLR-ERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKliGTQSRLQDSEHRVKELEKNMELSSG 305
Cdd:PTZ00121 1227 EAVKKAEEAKKDAEEAKKaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK--ADELKKAEEKKKADEAKKAEEKKKA 1304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 306 SFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIYANRM-HKASSRKEAENGSKRKgfniTSTKAVQT 384
Cdd:PTZ00121 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAaDEAEAAEEKAEAAEKK----KEEAKKKA 1380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 385 EDRTSSLDFPSPPPALTNNLPPDDQTDDylSLKDQQSREHRTRESKEwKIQEFWREREKERHMESAREQEKEKETLHERE 464
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKAD--ELKKAAAAKKKADEAKK-KAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 465 RQTELLKDVERQRLDQDLSSNEKNFKgnrglnREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREIQDYNQERVEEE 544
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAK------KADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
|
330
....*....|....
gi 1207193302 545 RQRKEQLLAKMREI 558
Cdd:PTZ00121 1532 EAKKADEAKKAEEK 1545
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
159-365 |
1.86e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.05 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 159 LSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEK-------ALHRYNDTDSEISQLLARHNNETHVLRERLRR 231
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQqkqilreRLANLERQLEELEAQLEELESKLDELAEELAE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 232 SQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNlGEREELSRKLIGTQ--------------SRLQDSEHRVKEL- 296
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELEELEAELEELESRLEELE-EQLETLRSKVAQLElqiaslnneierleARLERLEDRRERLq 420
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1207193302 297 ----EKNMELSSGSF---QRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDArniYANRMHKASSRKEA 365
Cdd:TIGR02168 421 qeieELLKKLEEAELkelQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA---AERELAQLQARLDS 493
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
244-558 |
2.04e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 244 RERDAQLQRCRSQMQKLQQLADDQnLGEREELSRKLIGTQSRLQDSEHRVKELEKNMELSSG---SFQRQLANERRKTHD 320
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQeeeKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 321 AQQEVKALQEEVERLCTKLKEKERELDA-----RNIYAnrmHKASSRKEAENGSKRKgfniTSTKAVQTEDRTSSLDfps 395
Cdd:TIGR02169 749 LEQEIENVKSELKELEARIEELEEDLHKleealNDLEA---RLSHSRIPEIQAELSK----LEEEVSRIEARLREIE--- 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 396 pppALTNNLPPDDQtddYLslkdQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERERQTE-LLKDVE 474
Cdd:TIGR02169 819 ---QKLNRLTLEKE---YL----EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLEsRLGDLK 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 475 RQR--LDQDLSSNEKNFkgnRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREI--QDYNQERVEEERQRKEQ 550
Cdd:TIGR02169 889 KERdeLEAQLRELERKI---EELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeEELSLEDVQAELQRVEE 965
|
....*...
gi 1207193302 551 LLAKMREI 558
Cdd:TIGR02169 966 EIRALEPV 973
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
181-562 |
3.38e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.28 E-value: 3.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 181 DELQRENRLLRQLQLRQEKALHRYNDTDSEIsqllarhNNETHVLRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKL 260
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEEL-------EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 261 QQLADDQNlGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLK 340
Cdd:TIGR02168 753 SKELTELE-AEIEELEERLEEAEEELAEAEAEIEELEAQIE----QLKEELKALREALDELRAELTLLNEEAANLRERLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 341 EKERELDARNIYANRMHKASSRKEAEngskrkgfnITSTKAVQTEDRTSsldfpspPPALTnnlppdDQTDDYLSLKDQQ 420
Cdd:TIGR02168 828 SLERRIAATERRLEDLEEQIEELSED---------IESLAAEIEELEEL-------IEELE------SELEALLNERASL 885
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 421 SREHRTRESKEWKIQEfwREREKERHMESAREQEKEKETLHERERQtellkdvERQRLDQDLSSNEKNFKGNRGLNREEe 500
Cdd:TIGR02168 886 EEALALLRSELEELSE--ELRELESKRSELRRELEELREKLAQLEL-------RLEGLEVRIDNLQERLSEEYSLTLEE- 955
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207193302 501 drrIGMSVSQKEEEIQK-QRELEEEQQKVRN---------REIQDYNQERVEEERQR------KEQLLAKMREIDIQT 562
Cdd:TIGR02168 956 ---AEALENKIEDDEEEaRRRLKRLENKIKElgpvnlaaiEEYEELKERYDFLTAQKedlteaKETLEEAIEEIDREA 1030
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
272-563 |
4.43e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 4.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 272 REELSRKLIGTQSRLQDSEHRVKELEKNM--------------ELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCT 337
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGELERQLeplerqaekaeryrELKEELKELEAELLLLKLRELEAELEELEAELEELEA 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 338 KLKEKERELDARNIYANRMHKASSRKEAENGSKRKGFNITSTKAVQTEDRTSSLdfpspppaltnnlppddqtddylslK 417
Cdd:COG1196 254 ELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARL-------------------------E 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 418 DQQSREHRTRESKEWKIQEfWREREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQDLSSNEKNfkgnrgLNR 497
Cdd:COG1196 309 ERRRELEERLEELEEELAE-LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE------EEL 381
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1207193302 498 EEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNReiqdynQERVEEERQRKEQLLAKMREIDIQTQ 563
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLER------LERLEEELEELEEALAELEEEEEEEE 441
|
|
| SF-CC1 |
TIGR01622 |
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
417-587 |
4.81e-04 |
|
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.
Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 43.37 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 417 KDQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERERqtELLKDVERQRLDqdlssneknfKGNRGLN 496
Cdd:TIGR01622 3 RDRERERLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDR--DYYRGRERRSRS----------RRPNRRY 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 497 REEEDRRigmsvsQKEEEIQKQRELEEEQQKvRNREIQDYNQERVEEERQRK----EQLLAKMREIDIQtqgqdsDFFSd 572
Cdd:TIGR01622 71 RPREKRR------RRGDSYRRRRDDRRSRRE-KPRARDGTPEPLTEDERDRRtvfvQQLAARARERDLY------EFFS- 136
|
170
....*....|....*
gi 1207193302 573 DTGSVRSPPRLSEQR 587
Cdd:TIGR01622 137 KVGKVRDVQIIKDRN 151
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
165-333 |
5.34e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 5.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 165 KINELKNALSELRLHADELQRenrllrqLQLRQEKALHRYNDTDSEISQllarhNNETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG3206 220 QLSELESQLAEARAELAEAEA-------RLAALRAQLGSGPDALPELLQ-----SPVIQQLRAQLAELEAELAELSARYT 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 245 ERDAQLQRCRSQMQKLQQLAddqnlgeREELSRKLIGTQSRLQDSEHRVKELEKNMElssgsfqrQLANERRKTHDAQQE 324
Cdd:COG3206 288 PNHPDVIALRAQIAALRAQL-------QQEAQRILASLEAELEALQAREASLQAQLA--------QLEARLAELPELEAE 352
|
....*....
gi 1207193302 325 VKALQEEVE 333
Cdd:COG3206 353 LRRLEREVE 361
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
408-550 |
5.79e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 42.94 E-value: 5.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 408 DQTDDYLslkDQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERE---------------RQTELLKD 472
Cdd:COG2268 180 EDENNYL---DALGRRKIAEIIRDARIAEAEAERETEIAIAQANREAEEAELEQEREietariaeaeaelakKKAEERRE 256
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207193302 473 VERQRLDQDLSSNEKNFKGNRGLNREEEDRRIgmsvsQKEEEIQKQRELEEEQQKVRNREiqdynqERVEEERQRKEQ 550
Cdd:COG2268 257 AETARAEAEAAYEIAEANAEREVQRQLEIAER-----EREIELQEKEAEREEAELEADVR------KPAEAEKQAAEA 323
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
153-557 |
8.16e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 8.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 153 QVTKRMLSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALhRYNDTDSEISQLLARHNNETHVLrERLRRS 232
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL-QLLPLYQELEALEAELAELPERL-EELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 233 QENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNLGEREELSRKLIGTQSRLQDSEHRVKELEKNMElssgsfqrqla 312
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE----------- 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 313 nerrkthDAQQEVKALQEEVERLctKLKEKERELDARNIYANRMHKASSRKEAENGSKRKGFNITSTKA---VQTEDRTS 389
Cdd:COG4717 224 -------ELEEELEQLENELEAA--ALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLgllALLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 390 SLDFPSPPPALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKIQEFWRE-REKERHMESAREQEKEKETLHERERQTE 468
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRiEELQELLREAEELEEELQLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 469 LLKDV----------------ERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNRE 532
Cdd:COG4717 375 LLAEAgvedeeelraaleqaeEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREE 454
|
410 420 430
....*....|....*....|....*....|...
gi 1207193302 533 IQDYNQE--------RVEEERQRKEQLLAKMRE 557
Cdd:COG4717 455 LAELEAEleqleedgELAELLQELEELKAELRE 487
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
157-348 |
9.14e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 42.74 E-value: 9.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 157 RMLSARLLKINELKNALSELRLHADELQREnrLLRQLQLRQEKALHRYNDTDSEISQLLARHN---------NETHVLRE 227
Cdd:PRK03918 542 KSLKKELEKLEELKKKLAELEKKLDELEEE--LAELLKELEELGFESVEELEERLKELEPFYNeylelkdaeKELEREEK 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 228 RLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQNL----GEREELSRKLIGTQSRLQDSEHRVKELEKNMEls 303
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYeelrEEYLELSRELAGLRAELEELEKRREEIKKTLE-- 697
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1207193302 304 sgsfqrQLANERRKTHDAQQEVKALQEEVERLcTKLKEKERELDA 348
Cdd:PRK03918 698 ------KLKEELEEREKAKKELEKLEKALERV-EELREKVKKYKA 735
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
227-353 |
1.03e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.96 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 227 ERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLADDQnlgereelsrklIGTQSRLQDSEHRVKELEKNMElssgS 306
Cdd:COG1566 103 EAELGAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKG------------AVSQQELDEARAALDAAQAQLE----A 166
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1207193302 307 FQRQLAnERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNIYA 353
Cdd:COG1566 167 AQAQLA-QAQAGLREEEELAAAQAQVAQAEAALAQAELNLARTTIRA 212
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
165-557 |
1.12e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.33 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 165 KINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISqllarhnnethVLRERLRRSQENQRTAErslR 244
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-----------TLEAEIEDLRETIAETE---R 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 245 ERDAQLQRCRSQMQKLQQLADDQNLG----EREELSRKLIgtQSRLQDSEHRVKELEKNME---LSSGSFQRQLANERRK 317
Cdd:PRK02224 273 EREELAEEVRDLRERLEELEEERDDLlaeaGLDDADAEAV--EARREELEDRDEELRDRLEecrVAAQAHNEEAESLRED 350
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 318 THDAQQEVKALQEEVERLCTKLKEKERELDARniyanRMHKASSRKEAENGSKRKGFnitstKAVQTEDRTSSLDfpspp 397
Cdd:PRK02224 351 ADDLEERAEELREEAAELESELEEAREAVEDR-----REEIEELEEEIEELRERFGD-----APVDLGNAEDFLE----- 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 398 pALTNNLppDDQTDDYLSLK-DQQSREHRTRESK----EWKIQEFWREREKERHMESAREQEKEKETLHERERQTELlkd 472
Cdd:PRK02224 416 -ELREER--DELREREAELEaTLRTARERVEEAEalleAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEE--- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 473 vERQRLDQDLSSNEKNFKGNRGLNREEEDRrigmsvSQKEEEIQKQRELEEEQqkvrnreiqdynQERVEEERQRKEQLL 552
Cdd:PRK02224 490 -EVEEVEERLERAEDLVEAEDRIERLEERR------EDLEELIAERRETIEEK------------RERAEELRERAAELE 550
|
....*
gi 1207193302 553 AKMRE 557
Cdd:PRK02224 551 AEAEE 555
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
432-552 |
1.92e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.62 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 432 WKIQEFWREREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEedrrigmsvsQK 511
Cdd:PRK12705 24 LLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEE----------QL 93
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1207193302 512 EEEIQKQRELEEEQQKvRNREIQDYNQERVEEERQRKEQLL 552
Cdd:PRK12705 94 DARAEKLDNLENQLEE-REKALSARELELEELEKQLDNELY 133
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
235-545 |
2.95e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 235 NQRTAERSLRERDAQLQRCRSQMQKLQQLADDQN--LGEREELSRKLIGTQSRLQDSEH-RVKELEKNMELSSGSFQRQL 311
Cdd:TIGR02169 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEkrLEEIEQLLEELNKKIKDLGEEEQlRVKEKIGELEAEIASLERSI 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 312 ANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNI-YANRMHKASSRKEAENGSKRKgfnitstkaVQTEDRTSS 390
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKrRDKLTEEYAELKEELEDLRAE---------LEEVDKEFA 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 391 LDFpspppaltnnlppdDQTDDYLSLKDQQSREHRTRESKEWKIQEFWREREKER---HMESAREQEKEKETLHERERQT 467
Cdd:TIGR02169 382 ETR--------------DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELadlNAAIAGIEAKINELEEEKEDKA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 468 ELLKDVERQ--RLDQDLSSNEKNFkgnrgLNREEEDRRIGMSVSQKEEEIQkqrELEEEQQKVRNREIQDYNQERVEEER 545
Cdd:TIGR02169 448 LEIKKQEWKleQLAADLSKYEQEL-----YDLKEEYDRVEKELSKLQRELA---EAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
231-557 |
3.05e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 231 RSQENQRTAERSLRERDAQlqrcRSQMQKLQQLADDQNLGEREELSRKLigTQSRLQDSEHRVKELEKNMELSSGSFQRQ 310
Cdd:PTZ00121 1134 RKAEDARKAEEARKAEDAK----RVEIARKAEDARKAEEARKAEDAKKA--EAARKAEEVRKAEELRKAEDARKAEAARK 1207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 311 LANER-----RKTHDAQ--------QEVKALQEEVERlctKLKEKERELDARNIYANRMHKASSRKEAENGSKRKGFNIT 377
Cdd:PTZ00121 1208 AEEERkaeeaRKAEDAKkaeavkkaEEAKKDAEEAKK---AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 378 STKAVQTEDRTSSLDFPSPPPALTNNLPPDDQTDDylsLKDQQSREHRTRESKEWKIQEfwREREKERHMESAREQEKEK 457
Cdd:PTZ00121 1285 KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE---AKKKAEEAKKKADAAKKKAEE--AKKAAEAAKAEAEAAADEA 1359
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 458 ETLHERERQTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREiqdyN 537
Cdd:PTZ00121 1360 EAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKAD----E 1435
|
330 340
....*....|....*....|
gi 1207193302 538 QERVEEERQRKEQLLAKMRE 557
Cdd:PTZ00121 1436 AKKKAEEAKKADEAKKKAEE 1455
|
|
| DUF724 |
pfam05266 |
Protein of unknown function (DUF724); This family contains several uncharacterized proteins ... |
254-348 |
3.63e-03 |
|
Protein of unknown function (DUF724); This family contains several uncharacterized proteins found in Arabidopsis thaliana and other plants. This region is often found associated with Agenet domains and may contain coiled-coil.
Pssm-ID: 428400 [Multi-domain] Cd Length: 188 Bit Score: 39.18 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 254 RSQMQKLQQLADDQN--LGEREELSRKLIGTQSRLQDSEHRVKELEKNM-ELssgsfQRQLANERRKTHDAQQEVKALQE 330
Cdd:pfam05266 91 QSRINKLLSLKDRQTklLEELKKLEKKIAEEESEKRKLEEEIDELEKKIlEL-----ERQLALAKEKKEAADKEIARLKS 165
|
90
....*....|....*...
gi 1207193302 331 EVERLCTKLKEKERELDA 348
Cdd:pfam05266 166 EAEKLEQEIQDVELEFEA 183
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
227-558 |
4.32e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.82 E-value: 4.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 227 ERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQqladdqnlGEREELSRKLIgTQSRLQDSEHRVKELEKNmelssgS 306
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLR--------REREKAERYQA-LLKEKREYEGYELLKEKE------A 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 307 FQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDARNiyanrmhkASSRKEAENGSKRKGFNITSTKAVQTED 386
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN--------KKIKDLGEEEQLRVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 387 RTSSLDFPSPPPALTNNLPPDD-QTDDYLSLKDQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKETLHERER 465
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEaEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 466 QTELLKDVERQRLDQDLSSNEKNFKGNRGLNREEEDRRIGMSVSQKEEEIQK-QRELEEEQQKVRNREIQ-DYNQERVEE 543
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINElEEEKEDKALEIKKQEWKlEQLAADLSK 466
|
330
....*....|....*
gi 1207193302 544 ERQRKEQLLAKMREI 558
Cdd:TIGR02169 467 YEQELYDLKEEYDRV 481
|
|
| BMS1 |
COG5192 |
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and ... |
286-548 |
4.81e-03 |
|
GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis];
Pssm-ID: 227519 [Multi-domain] Cd Length: 1077 Bit Score: 40.49 E-value: 4.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 286 LQDSEHRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLC-TKLKEKERELDARNIYANRMHKASSRKE 364
Cdd:COG5192 418 IAEETSREDELSFDDSDVSTSDENEDVDFTGKKGAINNEDESDNEEVAFDSdSQFDESEGNLRWKEGLASKLAYSQSGKR 497
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 365 AENGSKRKGFNITSTKAVQTEDRTSSLDfpspppALTNNLPPDDQTDDYLSLKDQQSREHRTRESKEWKiQEFWREREKE 444
Cdd:COG5192 498 GRNIQKIFYDESLSPEECIEEYKGESAK------SSESDLVVQDEPEDFFDVSKVANESISSNHEKLME-SEFEELKKKW 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 445 RHMESAREQEKEKETLHERERQTELLKDVER----QRLDQDLSSNEKN--FKGNRGLNREEEDRRIGMSVSQKEE----- 513
Cdd:COG5192 571 SSLAQLKSRFQKDATLDSIEGEEELIQDDEKgnfeDLEDEENSSDNEMeeSRGSSVTAENEESADEVDYETEREEnarkk 650
|
250 260 270
....*....|....*....|....*....|....*
gi 1207193302 514 EIQKQRELEEEQQKVRNREIQDYNQERVEEERQRK 548
Cdd:COG5192 651 EELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLK 685
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
418-558 |
5.52e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.51 E-value: 5.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 418 DQQSREHRTRESKEWKIQEFWREREKERHMESAREQEKEKET----LHERERQTELLKDVERQRLDQDLSSNEKNFKGNR 493
Cdd:PTZ00121 1173 EDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAeearKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE 1252
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1207193302 494 GLNREEEDRRIGMSVSQ---KEEEIQKQRELEEEQQKVRNREIQDYNQERVEEERQRKEQLLAKMREI 558
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQaaiKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
209-346 |
5.89e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 39.36 E-value: 5.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 209 SEISQLLARHNNETHVLRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLqqladdqnlgeREELSRKLIGTQSRLQD 288
Cdd:pfam09787 75 TELQELEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYL-----------EEELRRSKATLQSRIKD 143
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1207193302 289 SEHRVKELEKNMELS--SGSFQRQLANERRKTHDA----QQEVKALQEEVERLCTKLKEKEREL 346
Cdd:pfam09787 144 REAEIEKLRNQLTSKsqSSSSQSELENRLHQLTETliqkQTMLEALSTEKNSLVLQLERMEQQI 207
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
110-493 |
5.94e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.34 E-value: 5.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 110 LHKTGVHKGASRRILSHSHHPQQRAGAIRSQSLSKDAPSKDVDQVTKRMLSARLLKINELKNALSELRLHADE-LQRENR 188
Cdd:pfam02463 675 LLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEeEEEEEK 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 189 LLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRERLRRSQENQRTAERSLRERDAQLQrcrsqmQKLQQLADDQN 268
Cdd:pfam02463 755 SRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL------EEEQLLIEQEE 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 269 LGEREELSRKLIGTQSRLQDSEHRVKELEKNMELSSGSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDA 348
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQK 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 349 RNiyanrmhkassrkEAENGSKRKGFNITSTKAVQTEDRTSSLDFPSPPPALTNNLPPDDQTDDYLSLKDQQSREH-RTR 427
Cdd:pfam02463 909 LN-------------LLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEElGKV 975
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1207193302 428 ESKEWKIQEFWREREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQdlssNEKNFKGNR 493
Cdd:pfam02463 976 NLMAIEEFEEKEERYNKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVS----INKGWNKVF 1037
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
224-348 |
6.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 224 VLRERLRRSQENQRTAERSLRERDAQLQRCRSQMQKLQQLAddqnlgEREELSRKLIGTQSRLQDSEHRVKELEK-NMEL 302
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLA------EYSWDEIDVASAEREIAELEAELERLDAsSDDL 687
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1207193302 303 SsgSFQRQLANERRKTHDAQQEVKALQEEVERLCTKLKEKERELDA 348
Cdd:COG4913 688 A--ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDE 731
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
165-346 |
6.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 39.90 E-value: 6.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 165 KINELKNALSELRLHADELQRenrllrqlqlrqekalhRYNDTDSEISQLLARHnnETHVLRERLRRSQENQRTAERSLR 244
Cdd:COG4913 611 KLAALEAELAELEEELAEAEE-----------------RLEALEAELDALQERR--EALQRLAEYSWDEIDVASAEREIA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 245 ERDAQLQRCRSQMQKLQQLAD---------DQNLGEREELSRKLIGTQSRLQDSEHRVKELEK---NMELSSGSFQRQLA 312
Cdd:COG4913 672 ELEAELERLDASSDDLAALEEqleeleaelEELEEELDELKGEIGRLEKELEQAEEELDELQDrleAAEDLARLELRALL 751
|
170 180 190
....*....|....*....|....*....|....*...
gi 1207193302 313 NERRKTHDA----QQEVKALQEEVERLCTKLKEKEREL 346
Cdd:COG4913 752 EERFAAALGdaveRELRENLEERIDALRARLNRAEEEL 789
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
149-346 |
7.80e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 7.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 149 KDVDQVTKRMLSARLLKINELKNALSELRLHADELQRENRLLRQLQLRQEKALHRYNDTDSEISQLLARHNNETHVLRER 228
Cdd:pfam17380 360 RELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 229 LR--RSQENQRTAERSLrERDAQLQRCRSQ-----MQKLQQLADDQNLGEREELSRKLI-----GTQSRLQDSEHRVKEL 296
Cdd:pfam17380 440 LEeeRAREMERVRLEEQ-ERQQQVERLRQQeeerkRKKLELEKEKRDRKRAEEQRRKILekeleERKQAMIEEERKRKLL 518
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1207193302 297 EKNMELSSGSF----QRQLANERRKTHDAQQEVKALQEEV-----ERLCTKLKEKEREL 346
Cdd:pfam17380 519 EKEMEERQKAIyeeeRRREAEEERRKQQEMEERRRIQEQMrkateERSRLEAMEREREM 577
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
164-355 |
8.66e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 39.61 E-value: 8.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 164 LKINELKNALSELRLHADELQREnrllrqlQLRQEKALHRY------NDTDSEISQLLARHNNethvLRERLRRSQENQR 237
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKE-------LEEAEAALEEFrqknglVDLSEEAKLLLQQLSE----LESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 238 TAERSLRERDAQLQRCRSQMQKLQQLADDQNLGERE-ELSRKLIGTQSRLQDS-------EHRVKELEKNMELSSGSFQR 309
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLaELEAELAELSARYTPNhpdvialRAQIAALRAQLQQEAQRILA 316
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1207193302 310 QLANERRKthdAQQEVKALQEEVERLCTKLK---EKERELDA--RNIYANR 355
Cdd:COG3206 317 SLEAELEA---LQAREASLQAQLAQLEARLAelpELEAELRRleREVEVAR 364
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
272-558 |
9.46e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 39.65 E-value: 9.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 272 REELSRKLIGTQSRLQDSEHRVKELEKNMElssgSFQRQ---------LANERRKT---------HDAQQEVKALQEEVE 333
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELERQLK----SLERQaekaerykeLKAELRELelallvlrlEELREELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 334 RLCTKLKEKERELDARNIYANRMHKASSRKEAENGSKRKGFNITSTKAVQTEDRTSSLDFPspppalTNNLPPDDQTDDY 413
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRER------LANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1207193302 414 LSLKDQQSREHRTRESKEWKIQEFwrEREKERHMESAREQEKEKETLHERERQTELLKDVERQRLDQDLSSNEKNFKGNR 493
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLE--ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1207193302 494 glnREEEDRRIGMSVSQKEEEIQKQRELEEEQQKVRNREIqdynQERVEEERQRKEQLLAKMREI 558
Cdd:TIGR02168 402 ---IERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL----QAELEELEEELEELQEELERL 459
|
|
| |
