|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
3594-3675 |
4.37e-21 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 89.57 E-value: 4.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3594 KYLRASSFRKALIYQKKYLLLLLGGFQECEDVTLGVLARMGGHLALKDSKtitnhPKAFSRFRSAVRVSIAISRMKFLVR 3673
Cdd:pfam10495 1 KLLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS-----RKPRRKLKSAALAVIAIARMKRLAR 75
|
..
gi 1039770153 3674 RW 3675
Cdd:pfam10495 76 EW 77
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
156-964 |
5.85e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.96 E-value: 5.85e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 156 DIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQANE 235
Cdd:TIGR02168 233 RLEELREELEELQEEL-KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 236 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKdrkiENLNAKeIQEKQALIDELNT 315
Cdd:TIGR02168 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL----EELESR-LEELEEQLETLRS 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 316 RVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNE--RKCSEEIKELMRTVEELQKRNLKDSWL 393
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKElqAELEELEEELEELQEELERLEEALEEL 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 394 ETS--AVRRVEQETQRKLSHLQAELDEM-----------YGKQIVQMKQELINQHMSQIEEL---KSQHKREMENTLKSD 457
Cdd:TIGR02168 467 REEleEAEQALDAAERELAQLQARLDSLerlqenlegfsEGVKALLKNQSGLSGILGVLSELisvDEGYEAAIEAALGGR 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 458 TNAAISK------------EQVNLMNAAINELNV-RLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQ 524
Cdd:TIGR02168 547 LQAVVVEnlnaakkaiaflKQNELGRVTFLPLDSiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 525 KArQTIAEQENRLSEARKSLSTVEdLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERL 604
Cdd:TIGR02168 627 VV-DDLDNALELAKKLRPGYRIVT-LDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAE-LEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 605 RTQLlfsheEELSKLKEDLEVEhrinieklkdnlgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDl 684
Cdd:TIGR02168 704 RKEL-----EELEEELEQLRKE----------------LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA- 761
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 685 qeclvnskseemnlQINELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAenniLKEEKR 764
Cdd:TIGR02168 762 --------------EIEELEERLEEAEEELAE---AEAEIEELEAQIEQLKEELKALREALDELRAELTL----LNEEAA 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 765 VLEDKLkmyspsEQEERSIAvdpstsksadsRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQ 844
Cdd:TIGR02168 821 NLRERL------ESLERRIA-----------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 845 REYTCLLKIRDDLEATQTKQAlEYESKLRALEEELLSKRGNPAAPKGKSSGIfpseTLEIGEVVEKdtteLMEKLEVTKR 924
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGL----EVRIDNLQER----LSEEYSLTLE 954
|
810 820 830 840
....*....|....*....|....*....|....*....|
gi 1039770153 925 EKLELSEKVSGLSEQLKQthctinslsaEVRALKQEKEQL 964
Cdd:TIGR02168 955 EAEALENKIEDDEEEARR----------RLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1809-2520 |
4.62e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.88 E-value: 4.62e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1809 RLQAAVEKLLEAISETNTQLEHAKvTQTELMrESFRQKQEATESLHCL------EELRERLQEESRAREQLAEELNKAES 1882
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLE-RQAEKA-ERYKELKAELRELELAllvlrlEELREELEELQEELKEAEEELEELTA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1883 VIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQfLQETEKLM 1962
Cdd:TIGR02168 261 ELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESK-LDELAEEL 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1963 KEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQE---KNAELTDLRQQSQALEKQLEKMRKFLdeQAIDREHE 2039
Cdd:TIGR02168 340 AELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQletLRSKVAQLELQIASLNNEIERLEARL--ERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2040 RDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQ- 2118
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERl 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2119 ------------ALLASAEPFPKVEDQKRSG-AVEADPELSLEVQLQ-------VERDATDR------KQKEI------- 2165
Cdd:TIGR02168 498 qenlegfsegvkALLKNQSGLSGILGVLSELiSVDEGYEAAIEAALGgrlqavvVENLNAAKkaiaflKQNELgrvtflp 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2166 --TNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQ----------ELQQENRLFKDEIEKLGFAMKESDSVsT 2233
Cdd:TIGR02168 578 ldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvdDLDNALELAKKLRPGYRIVTLDGDLV-R 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2234 RDQPMLFG--KFAQLIQEKEIEIDRLNEQFIKLQQQL--------KLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKK 2303
Cdd:TIGR02168 657 PGGVITGGsaKTNSSILERRREIEELEEKIEELEEKIaelekalaELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2304 QREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKH----QLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEIN 2379
Cdd:TIGR02168 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEIEELEAQIEQLKEELKALREALDELRAELTLLN 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2380 FKMDQITQSLCNLNKECASNE-ELPSLPKESVHMT------VHELGSDNLQPEDAPAQ--DVTKPLEKQTSLTRLQKSPE 2450
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATErRLEDLEEQIEELSedieslAAEIEELEELIEELESEleALLNERASLEEALALLRSEL 896
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039770153 2451 ASRTQEIESLASSVGAKDVELTQCREQTETIQ---EQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQ 2520
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE 969
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
146-747 |
3.66e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.60 E-value: 3.66e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 146 VEKELAEKQHDIEELTQELEEMRAsfgteglkQLQEFEAAIKQRDGIITQLTANLQQARRekddtmvEFLELTEQSQKLQ 225
Cdd:COG1196 237 LEAELEELEAELEELEAELEELEA--------ELAELEAELEELRLELEELELELEEAQA-------EEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 226 IQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIEnlnakEIQE 305
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA-----ELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 306 KQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQK 385
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 386 RNLKDSwLETSAVRRVEQETQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKE 465
Cdd:COG1196 457 EEEALL-ELLAELLEEAALLEAALAELLEELAEA--AARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 466 QV------NLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSE 539
Cdd:COG1196 534 AAyeaaleAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 540 ARKSLSTVEDLKAEIVAASESRKELELKHEAEITnyKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKL 619
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLR--EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 620 KEDLEVEHRINIEKLKDnlgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEclvnSKSEEMNLQ 699
Cdd:COG1196 692 ELELEEALLAEEEEERE------LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEA----LEELPEPPD 761
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 1039770153 700 INELQKEIEILKQEEKEKGTL----EQEVQELQlktEQLEKqLKEKEDDLQE 747
Cdd:COG1196 762 LEELERELERLEREIEALGPVnllaIEEYEELE---ERYDF-LSEQREDLEE 809
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
268-973 |
5.46e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 5.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 268 KKEEDLQAQIS-----FLQEKLRAFEMEKDRkienlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH 342
Cdd:TIGR02168 220 AELRELELALLvlrleELREELEELQEELKE-----AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 343 EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKrnlkdswlETSAVRRVEQETQRKLSHLQAELDEMygK 422
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE--------ELAELEEKLEELKEELESLEAELEEL--E 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 423 QIVQMKQELINQHMSQIEELKSQhKREMENTLKSDTNaaiskeQVNLMNAAINELNVRLQETHAQKEELKGELgvVLGEK 502
Cdd:TIGR02168 365 AELEELESRLEELEEQLETLRSK-VAQLELQIASLNN------EIERLEARLERLEDRRERLQQEIEELLKKL--EEAEL 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 503 SALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEaEITNYKIKLEML 582
Cdd:TIGR02168 436 KELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE-GFSEGVKALLKN 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 583 EKEKNAVLDRMAESQEAElERLRTQLlfshEEELSKLKEDLEVE----HRINIEKLKDN---------LGIHYKQQIDGL 649
Cdd:TIGR02168 515 QSGLSGILGVLSELISVD-EGYEAAI----EAALGGRLQAVVVEnlnaAKKAIAFLKQNelgrvtflpLDSIKGTEIQGN 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 650 QNEMNRKMESMQCETDNLITQQNQL-------------------ILENSKLRDLQECLV-------------NSKSEEMN 697
Cdd:TIGR02168 590 DREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvvddldnALELAKKLRPGYRIVtldgdlvrpggviTGGSAKTN 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 698 LQINELQKEIEilkqeekekgTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSE 777
Cdd:TIGR02168 670 SSILERRREIE----------ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 778 QEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVN---YQELQREYTCLLKIR 854
Cdd:TIGR02168 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEA 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 855 DDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGIFPSETLEigEVVEKDTTELMEKLEVTKREKLELSEKVS 934
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELI--EELESELEALLNERASLEEALALLRSELE 897
|
730 740 750
....*....|....*....|....*....|....*....
gi 1039770153 935 GLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELEL 973
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEV 936
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
143-655 |
7.97e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 78.44 E-value: 7.97e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 143 LQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAI-------KQRDGIITQLTANLQQARREKDDTMVEFL 215
Cdd:COG1196 262 LAELEAELEELRLELEELELELEEAQAEE-YELLAELARLEQDIarleerrRELEERLEELEEELAELEEELEELEEELE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 216 ELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKI 295
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 296 ENLNA--KEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEI 373
Cdd:COG1196 421 EELEEleEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 374 KELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVqmkQELINQHMSQIEELKSQHKREMEnT 453
Cdd:COG1196 501 ADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV---VEDDEVAAAAIEYLKAAKAGRAT-F 576
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 454 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ 533
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 534 ENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLLFSHE 613
Cdd:COG1196 657 SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE-EELEEEALEEQLEAERE 735
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 1039770153 614 EELSKLKEDLEVEHRINIEKLKDNLGIH-YKQQIDGLQNEMNR 655
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEeLERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1868-2362 |
1.54e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1868 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1947
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1948 GPVEQQFLQETEKLMKEKLEVQcQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRK 2027
Cdd:COG1196 326 AELEEELEELEEELEELEEELE-EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEE 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2028 fLDEQAIDREHERDVFQQEIQKLEHQLKAVpRIQPVSEHQA-----REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQER 2102
Cdd:COG1196 405 -LEEAEEALLERLERLEEELEELEEALAEL-EEEEEEEEEAleeaaEEEAELEEEEEALLELLAELLEEAALLEAALAEL 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2103 NEEIEKLEcRVRELEQALLASAEPFP--------KVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQ 2174
Cdd:COG1196 483 LEELAEAA-ARLLLLLEAEADYEGFLegvkaallLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2175 FREELENKNDEVQELLMQLEIQRKESTTRLQE----------LQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFA 2244
Cdd:COG1196 562 AIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigaavdlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVT 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2245 QLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVV 2324
Cdd:COG1196 642 LAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
490 500 510
....*....|....*....|....*....|....*...
gi 1039770153 2325 STEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2362
Cdd:COG1196 722 EEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP 759
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
120-767 |
1.76e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.40 E-value: 1.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 120 LREEEFSLDDSSSEQGAQSSQTCLQM--VEKELAEKQHDIEELTQELEEMRasfgteglKQLQEFEAAIKQRDGIITQLT 197
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVseLEEEIEELQKELYALANEISRLE--------QQKQILRERLANLERQLEELE 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 198 ANLQQARREKDDTMVEFLELTEQSQKLQIQFQHLQA-----NETLQNST---------LSRTATDLLQAKRQIFTQQQQL 263
Cdd:TIGR02168 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAeleelEAELEELEsrleeleeqLETLRSKVAQLELQIASLNNEI 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 264 QDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHE 343
Cdd:TIGR02168 403 ERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAER 482
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 344 QLTQRNQEIQSLKlelgNSQQNERKCSEEIKELMrtveeLQKRNLKDSWLETSAVRRVEQETQRKL-----SHLQA---E 415
Cdd:TIGR02168 483 ELAQLQARLDSLE----RLQENLEGFSEGVKALL-----KNQSGLSGILGVLSELISVDEGYEAAIeaalgGRLQAvvvE 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 416 LDEMYGKQIVQMKQELINQHM----SQIEELKSQhKREMENTLKSDTNAAISKEQVNLMNAAINELNVRL---------- 481
Cdd:TIGR02168 554 NLNAAKKAIAFLKQNELGRVTflplDSIKGTEIQ-GNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddld 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 482 QETHAQKEELKGELGVVL-GE---KSALQSQSNDLLEEVRFLREQ-VQKARQTIAEQENRLSEARKSLSTVEDLKAEIVA 556
Cdd:TIGR02168 633 NALELAKKLRPGYRIVTLdGDlvrPGGVITGGSAKTNSSILERRReIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 557 ASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQE--AELERLRTQLLFSHEEELSKLKEDLEVEHRIN--IE 632
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKelTELEAEIEELEERLEEAEEELAEAEAEIEELEaqIE 792
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 633 KLKDNLGIhYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS--EEMNLQINELQKEIEIL 710
Cdd:TIGR02168 793 QLKEELKA-LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEdiESLAAEIEELEELIEEL 871
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 711 KQE----EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLE 767
Cdd:TIGR02168 872 ESElealLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
180-768 |
2.13e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.90 E-value: 2.13e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 180 QEFEAAIKQRDGIITQLTANLQQARREkddtmveflELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQ 259
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELE---------ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 260 QQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLN--AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADEL 337
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 338 LGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELD 417
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 418 EmygKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELN-----VRLQETHAQKEELK 492
Cdd:COG1196 447 A---AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEgflegVKAALLLAGLRGLA 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 493 GELGVVLGEKSALQSQSNDLLEEVrfLREQVQKARQTIAEQENRLSEARKSLSTVEDL-KAEIVAASESRKELELKHEAE 571
Cdd:COG1196 524 GAVAVLIGVEAAYEAALEAALAAA--LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLdKIRARAALAAALARGAIGAAV 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 572 ITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEH----RINIEKLKDNLGIHYKQQID 647
Cdd:COG1196 602 DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSaggsLTGGSRRELLAALLEAEAEL 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 648 GLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLV----NSKSEEMNLQINELQKEIEILKQEEKEKGTLEQE 723
Cdd:COG1196 682 EELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEealeEQLEAEREELLEELLEEEELLEEEALEELPEPPD 761
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 724 VQELQLKTEQLEKQLKEKE----------DDLQEKCAQLDAENNILKEEKRVLED 768
Cdd:COG1196 762 LEELERELERLEREIEALGpvnllaieeyEELEERYDFLSEQREDLEEARETLEE 816
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1989-2319 |
2.76e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.63 E-value: 2.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1989 DVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrehERDVFQQEIQKLEHQLKavpriqpvSEHQA 2068
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL------SRQISALRKDLARLEAE--------VEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2069 REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEAdpeLSLE 2148
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA---ANLR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2149 VQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEV---QELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAM 2225
Cdd:TIGR02168 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIeelEELIEELESELEALLNERASLEEALALLRSELEELSEEL 903
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2226 KESDSVstrdqpmlfgkfaqlIQEKEIEIDRLNEQFIKLQ---QQLKLTTDNkVIEEQKEQIQDLETQIERLMSEREHEK 2302
Cdd:TIGR02168 904 RELESK---------------RSELRRELEELREKLAQLElrlEGLEVRIDN-LQERLSEEYSLTLEEAEALENKIEDDE 967
|
330
....*....|....*..
gi 1039770153 2303 KQREEEVEQLTGVVEKL 2319
Cdd:TIGR02168 968 EEARRRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1798-2395 |
4.27e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 4.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1798 ENEELMLNISSRLQAAVEKLLE---AISETNTQLEHAKVTQTELMRESFR---QKQEATESLHCLEELRERLQEES---- 1867
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEElrlEVSELEEEIEELQKELYALANEISRleqQKQILRERLANLERQLEELEAQLeele 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1868 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1947
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1948 GPVE---QQFLQETEKLMKEKLEVQcqAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEK 2024
Cdd:TIGR02168 410 ERLEdrrERLQQEIEELLKKLEEAE--LKELQAELEELEEELE-ELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2025 MRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEH-------------------QAREVEQLT------NHLK 2079
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyeaaieaalggrlQAVVVENLNaakkaiAFLK 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2080 EKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKV------------------EDQKRSGA--- 2138
Cdd:TIGR02168 567 QNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddldnalELAKKLRPgyr 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2139 -VEADPELSLEVQLQVERDATDR-----KQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENR 2212
Cdd:TIGR02168 647 iVTLDGDLVRPGGVITGGSAKTNssileRRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2213 LFKDEIEKLGFAMKESDSVSTRDQpMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQL-KLTTDNKVIEEQKEQIQDLETQI 2291
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIA-QLSKELTELEAEIEELEERLEEAEEELAEAEaEIEELEAQIEQLKEELKALREAL 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2292 ERLMSE------REHEKKQR-----------EEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESfkhQLDKVTAEK 2354
Cdd:TIGR02168 806 DELRAEltllneEAANLRERleslerriaatERRLEDLEEQIEELSEDIESLAAEIEELEELIEELES---ELEALLNER 882
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1039770153 2355 LVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2395
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREK 923
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1956-2332 |
5.10e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 75.86 E-value: 5.10e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1956 QETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEeQVSRFIEL-EQEKNAELTDLRQQSQALEKQLEKmrkfLDEQAI 2034
Cdd:TIGR02168 175 KETERKLERTRENLDRLEDILNELERQLKSLERQAE-KAERYKELkAELRELELALLVLRLEELREELEE----LQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2035 DREHERDVFQQEIQKLEHQLKAVPRIQPVSEhqaREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVR 2114
Cdd:TIGR02168 250 EAEEELEELTAELQELEEKLEELRLEVSELE---EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2115 ELEQALLASAEPFPKVEDQKrsgaveadpeLSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLE 2194
Cdd:TIGR02168 327 ELESKLDELAEELAELEEKL----------EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2195 IQRKEST---TRLQELQQENRLFKDEIEKLGFAMKESDsvstrdqpmlFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLt 2271
Cdd:TIGR02168 397 SLNNEIErleARLERLEDRRERLQQEIEELLKKLEEAE----------LKELQAELEELEEELEELQEELERLEEALEE- 465
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 2272 tdnkvIEEQKEQIQdletQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREG 2332
Cdd:TIGR02168 466 -----LREELEEAE----QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
147-972 |
9.09e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.10 E-value: 9.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 147 EKELAEKQHDIEELTQELEemrasfGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQI 226
Cdd:TIGR02169 206 EREKAERYQALLKEKREYE------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 227 QFQHLQANETLQ-NSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEmekdrkienlnaKEIQE 305
Cdd:TIGR02169 280 KIKDLGEEEQLRvKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE------------REIEE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 306 KQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEEL-- 383
Cdd:TIGR02169 348 ERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLna 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 384 ------QKRNLKDSWLETSAVRRVEQEtqRKLSHLQAELDEmYGKQIVQMKQELinqhmSQIEELKSQHKREMEntlKSD 457
Cdd:TIGR02169 428 aiagieAKINELEEEKEDKALEIKKQE--WKLEQLAADLSK-YEQELYDLKEEY-----DRVEKELSKLQRELA---EAE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 458 TNAAISKEQVNLMNAAINELNVRLQETHAqkeeLKGELGVVlGEK--SALQSQSNDLLEEVRFLREQVQKARQTIAEQEN 535
Cdd:TIGR02169 497 AQARASEERVRGGRAVEEVLKASIQGVHG----TVAQLGSV-GERyaTAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 536 rlsEARKSLSTVEDLKAEivaasesRKELELKHEAEITNYKIKL-EMLEKEKNA---------VLDRMAESQ-------- 597
Cdd:TIGR02169 572 ---AGRATFLPLNKMRDE-------RRDLSILSEDGVIGFAVDLvEFDPKYEPAfkyvfgdtlVVEDIEAARrlmgkyrm 641
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 598 ---EAEL-----------ERLRTQLLFSHEEElsklKEDLEVEHRinIEKLKDNLGIhYKQQIDGLQNEMNRKMESMQCE 663
Cdd:TIGR02169 642 vtlEGELfeksgamtggsRAPRGGILFSRSEP----AELQRLRER--LEGLKRELSS-LQSELRRIENRLDELSQELSDA 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 664 TDNLITQQNQLILENSKLRDLQECLVNSKSeemnlQINELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKED 743
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKLKERLEELEE-----DLSSLEQEIENVKSELKE---LEARIEELEEDLHKLEEALNDLEA 786
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 744 DL-QEKCAQLDAENNILKEEKRVLE---DKLKMYSPSEQEERSIAVDPSTSKSADSR-WQKEVAMLRKETEDLQQQCLYL 818
Cdd:TIGR02169 787 RLsHSRIPEIQAELSKLEEEVSRIEarlREIEQKLNRLTLEKEYLEKEIQELQEQRIdLKEQIKSIEKEIENLNGKKEEL 866
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 819 NEEIEKQRNtfafAEKNFEVNYQELQREytcllkiRDDLEAtqtkQALEYESKLRALEEELLSKRGNPAAPKGKSSGIFp 898
Cdd:TIGR02169 867 EEELEELEA----ALRDLESRLGDLKKE-------RDELEA----QLRELERKIEELEAQIEKKRKRLSELKAKLEALE- 930
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 899 SETLEIGEVVEKDTTELMEK--LEVTKREKLELSEKVSGLS-------EQLKQTHCTINSLSAEVRALKQEKEQLLLRCG 969
Cdd:TIGR02169 931 EELSEIEDPKGEDEEIPEEElsLEDVQAELQRVEEEIRALEpvnmlaiQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010
|
...
gi 1039770153 970 ELE 972
Cdd:TIGR02169 1011 EYE 1013
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
122-934 |
1.00e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.18 E-value: 1.00e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 122 EEEFSLDDSSSEQGAQSSQTCLQMVEKELAEKQHDIEElTQELEEMRASFGTEGLKQLQEFEAAIKQRDgiitqlTANLQ 201
Cdd:PTZ00121 1143 EEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEA-ARKAEEVRKAEELRKAEDARKAEAARKAEE------ERKAE 1215
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 202 QARREKDDTMVEFLELTEQSQKlqiQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQ 281
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEEAKK---DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKA 1292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 282 EKLRafEMEKDRKIENLNAKEIQEKQAliDELNTRVVEEEKKTVELKNKV---TTADELLGGLHEQLTQRNQEIQSLKLE 358
Cdd:PTZ00121 1293 DEAK--KAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKKADAAKKKAeeaKKAAEAAKAEAEAAADEAEAAEEKAEA 1368
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 359 LGNSQQNERKCSEEIK---ELMRTVEELQKRNLKDSwLETSAVRRVEQEtQRKLSHLQAELDEMygKQIVQMKQELINQH 435
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKkkaEEKKKADEAKKKAEEDK-KKADELKKAAAA-KKKADEAKKKAEEK--KKADEAKKKAEEAK 1444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 436 MSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAA--INELNVRLQETHAQKEELKGelgvvlgeksalQSQSNDLL 513
Cdd:PTZ00121 1445 KADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAkkADEAKKKAEEAKKKADEAKK------------AAEAKKKA 1512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 514 EEVRFLREQVQKARQTIAEQENRLSEARKSlstVEDLKAEIVAASESRKELELKHEAEitnykiKLEMLEKEKNAVLDRM 593
Cdd:PTZ00121 1513 DEAKKAEEAKKADEAKKAEEAKKADEAKKA---EEKKKADELKKAEELKKAEEKKKAE------EAKKAEEDKNMALRKA 1583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 594 AESQEAELERLRTQLLFSHEEELSKLKE-DLEVEHRINIEKLKDNLGIHYK-QQIDGLQNEMNRKMESMQCETDNLITQQ 671
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEaKKAEEAKIKAEELKKAEEEKKKvEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 672 NQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEkcaq 751
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA---- 1739
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 752 ldaennilKEEKRVLEDKLKmyspSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEiEKQRNTFAf 831
Cdd:PTZ00121 1740 --------EEDKKKAEEAKK----DEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD-KKIKDIFD- 1805
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 832 aekNFEvNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAAPKGKSSGI---FPSETleigEVV 908
Cdd:PTZ00121 1806 ---NFA-NIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKeadFNKEK----DLK 1877
|
810 820
....*....|....*....|....*.
gi 1039770153 909 EKDTTELMEKLEVTKREKLELSEKVS 934
Cdd:PTZ00121 1878 EDDEEEIEEADEIEKIDKDDIEREIP 1903
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1809-2323 |
1.55e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 1.55e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1809 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYS 1888
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1889 DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQfLQETEKLMKEKLEV 1968
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEA-LAELEEEEEEEEEA 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1969 QCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQ 2048
Cdd:COG1196 444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2049 KLEHQLKAVP-------------RIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRE 2115
Cdd:COG1196 524 GAVAVLIGVEaayeaaleaalaaALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2116 LEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEI 2195
Cdd:COG1196 604 VASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEE 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2196 QRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLfgkfAQLIQEKEIEIDRLNEQFIKLQQQLKLT-TDN 2274
Cdd:COG1196 684 LAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE----EQLEAEREELLEELLEEEELLEEEALEElPEP 759
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039770153 2275 KVIEEQKEQIQDLETQIERL-----MSEREHE---------KKQR---EEEVEQLTGVVEKLQQEV 2323
Cdd:COG1196 760 PDLEELERELERLEREIEALgpvnlLAIEEYEeleerydflSEQRedlEEARETLEEAIEEIDRET 825
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1809-2322 |
6.79e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 6.79e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1809 RLQAAVEKLLEAISETNTQLEHAKVTQTELMRES-------FRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAE 1881
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELELELeeaqaeeYELLAELARLEQDIARLEERRRELEERLEELEEELAELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1882 SVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGpVEQQFLQETEKL 1961
Cdd:COG1196 330 EELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA-ELAAQLEELEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1962 MKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIEL---EQEKNAELTDLRQQSQALEKQLEKMRKFLDE--QAIDR 2036
Cdd:COG1196 409 EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAaeeEAELEEEEEALLELLAELLEEAALLEAALAEllEELAE 488
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2037 EHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLecRVREL 2116
Cdd:COG1196 489 AAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAA--AIEYL 566
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2117 EQALLASAEPFPKVEDQKRSGAVEADPELSLE---VQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQL 2193
Cdd:COG1196 567 KAAKAGRATFLPLDKIRARAALAAALARGAIGaavDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRL 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2194 EIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTD 2273
Cdd:COG1196 647 REVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEAL 726
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 1039770153 2274 NKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQE 2322
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
130-877 |
7.41e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 7.41e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 130 SSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDD 209
Cdd:TIGR02169 247 ASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 210 TMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEM 289
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 290 EKDRKIEnlnakEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKC 369
Cdd:TIGR02169 407 ELDRLQE-----ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRV 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 370 SEEIKELMRTVEEL--QKRNLKDSWLETSAVRRVEQETQRKLSHLQAEL---DEMYGKQI----------VQMKQELINQ 434
Cdd:TIGR02169 482 EKELSKLQRELAEAeaQARASEERVRGGRAVEEVLKASIQGVHGTVAQLgsvGERYATAIevaagnrlnnVVVEDDAVAK 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 435 hmSQIEELKSQHKREME----NTLKSDTN--AAISKEQVnlMNAAINELN----------------VRLQETHAQKE--- 489
Cdd:TIGR02169 562 --EAIELLKRRKAGRATflplNKMRDERRdlSILSEDGV--IGFAVDLVEfdpkyepafkyvfgdtLVVEDIEAARRlmg 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 490 -----ELKGEL----GVVLG---EKSALQSQSNDLLEEVRFLREQVQK-------ARQTIAEQENRLSEARKSLStveDL 550
Cdd:TIGR02169 638 kyrmvTLEGELfeksGAMTGgsrAPRGGILFSRSEPAELQRLRERLEGlkrelssLQSELRRIENRLDELSQELS---DA 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 551 KAEIVAASESRKELELKHEA---EITNYKIKLEMLEKEKNAVLDRMAESqEAELERLrtqllfshEEELSKLKEDLeveh 627
Cdd:TIGR02169 715 SRKIGEIEKEIEQLEQEEEKlkeRLEELEEDLSSLEQEIENVKSELKEL-EARIEEL--------EEDLHKLEEAL---- 781
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 628 riniEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNsKSEEMNLQINELQKEI 707
Cdd:TIGR02169 782 ----NDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE-QRIDLKEQIKSIEKEI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 708 EILKqeeKEKGTLEQEVQELQLKTEQLEKQLKekedDLQEKCAQLDAENNILKEEKRVLE---DKLKMYSPSEQEERSIA 784
Cdd:TIGR02169 857 ENLN---GKKEELEEELEELEAALRDLESRLG----DLKKERDELEAQLRELERKIEELEaqiEKKRKRLSELKAKLEAL 929
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 785 VDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRntfafaeknfEVNYQELQrEYTCLLKIRDDLEATQTKQ 864
Cdd:TIGR02169 930 EEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALE----------PVNMLAIQ-EYEEVLKRLDELKEKRAKL 998
|
810
....*....|...
gi 1039770153 865 ALEYESKLRALEE 877
Cdd:TIGR02169 999 EEERKAILERIEE 1011
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
192-860 |
1.14e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 1.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 192 IITQLTANLQQARREKDDTMvEFLELTEQSQKLQIQ-----FQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDY 266
Cdd:COG1196 194 ILGELERQLEPLERQAEKAE-RYRELKEELKELEAEllllkLRELEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 267 QKKEEDLQAQISFLQEKLRAFEMEKDR--KIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQ 344
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARleQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 345 LTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQI 424
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 425 VQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQV-NLMNAAINELNVRLQETHAQKEELKGELGVVLGEKS 503
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLeAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 504 ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRkelelkheaeitnykiklemLE 583
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAK--------------------AG 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 584 KEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLgihykqqiDGLQNEMNRKMESMQCE 663
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL--------VAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 664 TDNLITQQNQLILENSKLRDLQEclvNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKED 743
Cdd:COG1196 645 RLREVTLEGEGGSAGGSLTGGSR---RELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEEL 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 744 DLQEKCAQLDAENNILKEEkrvLEDKLKMYSPSEQEERSIAVDPSTsksadsrWQKEVAMLRKETEDLQqqclylneeie 823
Cdd:COG1196 722 EEEALEEQLEAEREELLEE---LLEEEELLEEEALEELPEPPDLEE-------LERELERLEREIEALG----------- 780
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 1039770153 824 kqrntfafaeknfEVN------YQELQREYTCLLKIRDDLEAT 860
Cdd:COG1196 781 -------------PVNllaieeYEELEERYDFLSEQREDLEEA 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
344-755 |
5.26e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 5.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 344 QLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKrnlkdswlETSAVRRVEQETQRKLSHLQAELDEMygKQ 423
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE--------ELEQLRKELEELSRQISALRKDLARL--EA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 424 IVQMKQELINQHMSQIEELksqhkrementlksdtnaaisKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKS 503
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTEL---------------------EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 504 ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLstvEDLKAEIVAASESRKELelkhEAEITNYKIKLEMLE 583
Cdd:TIGR02168 800 ALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL---EDLEEQIEELSEDIESL----AAEIEELEELIEELE 872
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 584 KEKNAVLDRMAESQEAelerlrtqlLFSHEEELSKLKEDLEvEHRINIEKLKDNLgihykQQIDGLQNEMNRKMESMQCE 663
Cdd:TIGR02168 873 SELEALLNERASLEEA---------LALLRSELEELSEELR-ELESKRSELRREL-----EELREKLAQLELRLEGLEVR 937
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 664 TDNLITQQnqlileNSKLRDLQEcLVNSKSEEMNLQINELQKEIEILKQEEKEKG----TLEQEVQELQLKTEQLEKQ-- 737
Cdd:TIGR02168 938 IDNLQERL------SEEYSLTLE-EAEALENKIEDDEEEARRRLKRLENKIKELGpvnlAAIEEYEELKERYDFLTAQke 1010
|
410
....*....|....*....
gi 1039770153 738 -LKEKEDDLQEKCAQLDAE 755
Cdd:TIGR02168 1011 dLTEAKETLEEAIEEIDRE 1029
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1809-2321 |
6.91e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 68.53 E-value: 6.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1809 RLQAAVEKLLEAISETNTQLEHAKVTQTEL--MRESFRQKQEATESLhcleelrerlqeesrareqlAEELNKAESVIDG 1886
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEAdeVLEEHEERREELETL--------------------EAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1887 YSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMR---AEAGPVEQQFLQETEKLMK 1963
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRdrlEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1964 EKLEVQCQAEKVR---GDLQKQVKALEIDVEEQVSRFIELEqeknAELTDLRQQSQALEKQLEKMRKFLDEqaidREHER 2040
Cdd:PRK02224 350 DADDLEERAEELReeaAELESELEEAREAVEDRREEIEELE----EEIEELRERFGDAPVDLGNAEDFLEE----LREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2041 DVFQQEIQKLEHQLKAVpriqpvsEHQAREVEQLtnhLKE-KTDRCSELLLSKEQLQRdIQERNEEIEKLECRVRELEQA 2119
Cdd:PRK02224 422 DELREREAELEATLRTA-------RERVEEAEAL---LEAgKCPECGQPVEGSPHVET-IEEDRERVEELEAELEDLEEE 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2120 LLASAEPFPKVEDqkrsgAVEAdpelslEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKE 2199
Cdd:PRK02224 491 VEEVEERLERAED-----LVEA------EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2200 STTRLQELQQENRLFKDEIEKLGFAMKESDSVST-RDQpmlfgkfAQLIQEKEIEIDRLNEQFIKLQ------------- 2265
Cdd:PRK02224 560 AAEAEEEAEEAREEVAELNSKLAELKERIESLERiRTL-------LAAIADAEDEIERLREKREALAelnderrerlaek 632
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2266 ----QQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQ 2321
Cdd:PRK02224 633 rerkRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE 692
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1917-2320 |
1.10e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.17 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1917 NRLQELESDQRRVEEERQLLCRQREAMRAEAGPVeQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSR 1996
Cdd:TIGR02169 660 RAPRGGILFSRSEPAELQRLRERLEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1997 FIELE---QEKNAELTDLRQQSQALEKQLEKMRKFLDE-QAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVE 2072
Cdd:TIGR02169 739 LEELEedlSSLEQEIENVKSELKELEARIEELEEDLHKlEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2073 QLTNhlkektdrcsELLLSKEQLQRDIQERNEEIEKLECRVRELEQALlasaepfpkVEDQKRSGAVEADPElslEVQLQ 2152
Cdd:TIGR02169 819 QKLN----------RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI---------ENLNGKKEELEEELE---ELEAA 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2153 VeRDATDRK---QKEITNLEEQLEqfreELENKNDEVQELLMQLEIQRKESTTRLQELQQENrlfkDEIEKLGFAMKESD 2229
Cdd:TIGR02169 877 L-RDLESRLgdlKKERDELEAQLR----ELERKIEELEAQIEKKRKRLSELKAKLEALEEEL----SEIEDPKGEDEEIP 947
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2230 SvstrdQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLklttdnkviEEQKEQIQDLETQIERLMSER--------EHE 2301
Cdd:TIGR02169 948 E-----EELSLEDVQAELQRVEEEIRALEPVNMLAIQEY---------EEVLKRLDELKEKRAKLEEERkailerieEYE 1013
|
410
....*....|....*....
gi 1039770153 2302 KKQREEEVEQLTGVVEKLQ 2320
Cdd:TIGR02169 1014 KKKREVFMEAFEAINENFN 1032
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
437-974 |
1.17e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 437 SQIEELKSQHKREMENTLKSdtnaaiskeqvnlmnaaINELNVRLQETHAQKEEL---KGELGVVLGEKSALQSQSNDLL 513
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLRE-----------------INEISSELPELREELEKLekeVKELEELKEEIEELEKELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 514 EEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELElKHEAEITNYKIKLEMLEKEKNAVLDRM 593
Cdd:PRK03918 252 GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-EYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 594 --AESQEAELERLRtQLLFSHEEELSKLKEDLEVEHRI-----NIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDN 666
Cdd:PRK03918 331 keLEEKEERLEELK-KKLKELEKRLEELEERHELYEEAkakkeELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 667 LITQQNQLILENSKLRDLQECLVNSKSE--EMNLQINELQKEiEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDD 744
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIEELKKAKGKcpVCGRELTEEHRK-ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKV 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 745 LqEKCAQLDAENNILkEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQ--------KEVAMLRKETEDLQQQCL 816
Cdd:PRK03918 489 L-KKESELIKLKELA-EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEikslkkelEKLEELKKKLAELEKKLD 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 817 YLNEE---IEKQRNTFAF-AEKNFEVNYQELQ---REYTCLLKIRDDLEATQTKQALEyESKLRALEEELlskrgnpaap 889
Cdd:PRK03918 567 ELEEElaeLLKELEELGFeSVEELEERLKELEpfyNEYLELKDAEKELEREEKELKKL-EEELDKAFEEL---------- 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 890 kGKSSGIFPSETLEIGEVVEKDTTELMEKLEvtkREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCG 969
Cdd:PRK03918 636 -AETEKRLEELRKELEELEKKYSEEEYEELR---EEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKK 711
|
....*
gi 1039770153 970 ELELL 974
Cdd:PRK03918 712 ELEKL 716
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1868-2362 |
1.34e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.78 E-value: 1.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1868 RAREQLAEELNKAESV---IDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERqllcRQREAMR 1944
Cdd:PRK03918 176 RRIERLEKFIKRTENIeelIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELE----KELESLE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1945 AEAGPVEQQfLQETEKLMKEKLEVQCQAEKVRGDLQK-QVKALE-IDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQL 2022
Cdd:PRK03918 252 GSKRKLEEK-IRELEERIEELKKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERI 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2023 EKMRKfLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELL-LSKEQLQRDIQE 2101
Cdd:PRK03918 331 KELEE-KEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELeKAKEEIEEEISK 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2102 RNEEIEKLECRVRELEQAL--LASAEP----------------------------------FPKVEDQKRSGAVEADPEL 2145
Cdd:PRK03918 410 ITARIGELKKEIKELKKAIeeLKKAKGkcpvcgrelteehrkelleeytaelkriekelkeIEEKERKLRKELRELEKVL 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2146 SLEVQLQVERDATDrkqkEITNLEEQLEQFR-EELENKNDEVQEL--------------------LMQLEIQRKESTTRL 2204
Cdd:PRK03918 490 KKESELIKLKELAE----QLKELEEKLKKYNlEELEKKAEEYEKLkekliklkgeikslkkelekLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2205 QELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQL------IQEKEIEIDRLNEQFIKLQQQLKLTtdNKVIE 2278
Cdd:PRK03918 566 DELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELkdaekeLEREEKELKKLEEELDKAFEELAET--EKRLE 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2279 EQKEQIQDLetqiERLMSEREHEKKqrEEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLE 2358
Cdd:PRK03918 644 ELRKELEEL----EKKYSEEEYEEL--REEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLE 717
|
....
gi 1039770153 2359 QQVE 2362
Cdd:PRK03918 718 KALE 721
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
152-525 |
1.48e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 152 EKQHDIEELTQELEEMRAsfgteglkQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQHL 231
Cdd:TIGR02168 674 ERRREIEELEEKIEELEE--------KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 232 QANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEmekdrkienlnaKEIQEKQALID 311
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR------------EALDELRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 312 ELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELM--RTVEELQKRNLK 389
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLneRASLEEALALLR 893
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 390 DSWLETSAVRRVEQETQRKLSHLQAELDEMYGkQIVQMKQELINQHMSQIEELKSQHKREME----NTLKSDTNAAISKE 465
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLA-QLELRLEGLEVRIDNLQERLSEEYSLTLEeaeaLENKIEDDEEEARR 972
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 466 QVNLMNAAINEL-NVRLqETHAQKEELKgelgvvlGEKSALQSQSNDLLEEVRFLREQVQK 525
Cdd:TIGR02168 973 RLKRLENKIKELgPVNL-AAIEEYEELK-------ERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1797-2340 |
1.58e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 67.40 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1797 PENEELMLNISSRLQAaVEKLLEAISETNTQLE---------HAKVTQTELMRESFRQKQEATES----LHCLEELRERL 1863
Cdd:PRK03918 217 PELREELEKLEKEVKE-LEELKEEIEELEKELEslegskrklEEKIRELEERIEELKKEIEELEEkvkeLKELKEKAEEY 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1864 QEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQE---KTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQR 1940
Cdd:PRK03918 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKEleeKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1941 EAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKV---RGDLQKQVKALEIDVEEQVS---------RFIELEQEKN--- 2005
Cdd:PRK03918 376 RLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKItarIGELKKEIKELKKAIEELKKakgkcpvcgRELTEEHRKElle 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2006 ---AELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEiqKLEHQLKAVPriQPVSEHQAREVEQLTnhlkEKT 2082
Cdd:PRK03918 456 eytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK--ELAEQLKELE--EKLKKYNLEELEKKA----EEY 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2083 DRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQ-----------L 2151
Cdd:PRK03918 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKelepfyneyleL 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2152 QVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQL-EIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDS 2230
Cdd:PRK03918 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELeELEKKYSEEEYEELREEYLELSRELAGLRAELEELEK 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2231 vstrdqpmlfgkfaqLIQEKEIEIDRLNEQFiklqqqlklttdnKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVE 2310
Cdd:PRK03918 688 ---------------RREEIKKTLEKLKEEL-------------EEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
570 580 590
....*....|....*....|....*....|..
gi 1039770153 2311 QLTGVVEKLQQEVVS--TEQQREGARTLPEDE 2340
Cdd:PRK03918 740 RALSKVGEIASEIFEelTEGKYSGVRVKAEEN 771
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3026-3361 |
1.67e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.65 E-value: 1.67e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3026 EMQLELSSLRDRAAELQEQLSS--------EKmvVAELKSELAQAKLELG-----------TTLKAQHKRLK-ELEAFRS 3085
Cdd:COG1196 183 ATEENLERLEDILGELERQLEPlerqaekaER--YRELKEELKELEAELLllklreleaelEELEAELEELEaELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3086 EVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQ 3165
Cdd:COG1196 261 ELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3166 QKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDggqpppalpsedlLKELQKQLEE 3245
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE-------------LAAQLEELEE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3246 KHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGK 3325
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
330 340 350
....*....|....*....|....*....|....*.
gi 1039770153 3326 RLQGLMQEFQKQELEPEEKPGSRGLVDQNLNEPATW 3361
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA 523
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1838-2212 |
2.25e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1838 LMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAesvidgysdektlferqiqektdiiehleqevlcmNN 1917
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKL-----------------------------------KE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1918 RLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLmkEKLEVQCQAEKVRgDLQKQVKALEIDVEEQVSRF 1997
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL--NDLEARLSHSRIP-EIQAELSKLEEEVSRIEARL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1998 IELEQEKNAEltdlrqqsQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIqpVSEHQArEVEQLTNH 2077
Cdd:TIGR02169 815 REIEQKLNRL--------TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE--LEELEA-ALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2078 LKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEvQLQVERda 2157
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE-DVQAEL-- 960
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039770153 2158 tDRKQKEITNLEE---QLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENR 2212
Cdd:TIGR02169 961 -QRVEEEIRALEPvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
139-845 |
3.55e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.53 E-value: 3.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 139 SQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELT 218
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 219 EQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENL 298
Cdd:pfam02463 399 LKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 299 NAKEI--QEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNsqQNERKCSEEIKEL 376
Cdd:pfam02463 479 LVKLQeqLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKV--AISTAVIVEVSAT 556
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 377 MRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQHKREMENTLKS 456
Cdd:pfam02463 557 ADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTK 636
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 457 DTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLgEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENR 536
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQ-ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKL 715
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 537 LSEARKSL----STVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSH 612
Cdd:pfam02463 716 KLEAEELLadrvQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEK 795
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 613 EEELSKLKEDLEVEHRINIEKLK-DNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLqeclvNS 691
Cdd:pfam02463 796 LKAQEEELRALEEELKEEAELLEeEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEEL-----LQ 870
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 692 KSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:pfam02463 871 ELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEK 950
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 772 MYSPSEQEERSIAVDPSTSKSAdsrwQKEVAMLRKETEDLQQQclYLNEEIEKQRNTFAFAEKNFEVNYQELQR 845
Cdd:pfam02463 951 EENNKEEEEERNKRLLLAKEEL----GKVNLMAIEEFEEKEER--YNKDELEKERLEEEKKKLIRAIIEETCQR 1018
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
268-973 |
4.29e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.30 E-value: 4.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 268 KKEEDLQAQISFLQEKLRAFEMEKDrKIENLNAKEIQEKQALIDELNTRVVEEEK----KTVELKNKVTTADELLGGL-- 341
Cdd:pfam15921 103 KQKFYLRQSVIDLQTKLQEMQMERD-AMADIRRRESQSQEDLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLRKMMls 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 342 HEQLTQrnqEIQSLKLELgnsqqnERKCSEEIKElMRTVEELQKRNLKdswletSAVRRVEQETQRKLSHLQAEL----D 417
Cdd:pfam15921 182 HEGVLQ---EIRSILVDF------EEASGKKIYE-HDSMSTMHFRSLG------SAISKILRELDTEISYLKGRIfpveD 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 418 EMYG-KQIVQMKQELI-NQHMSQIEELKSQHKREMENTLKSDTNA-----------AISKEQVNLMNA-----------A 473
Cdd:pfam15921 246 QLEAlKSESQNKIELLlQQHQDRIEQLISEHEVEITGLTEKASSArsqansiqsqlEIIQEQARNQNSmymrqlsdlesT 325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 474 INELNVRLQET----HAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVED 549
Cdd:pfam15921 326 VSQLRSELREAkrmyEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWD 405
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 550 LK-AEIVAASESRKELELKHeAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLR-----TQLLFSHEEELSKLKEDL 623
Cdd:pfam15921 406 RDtGNSITIDHLRRELDDRN-MEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEkvsslTAQLESTKEMLRKVVEEL 484
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 624 EVEhRINIEKLKDNLgihykQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSE--EMNLQIN 701
Cdd:pfam15921 485 TAK-KMTLESSERTV-----SDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTEceALKLQMA 558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 702 ELQKEIEILKQEEKEK----GTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKE-EKRVLE---DKLKMY 773
Cdd:pfam15921 559 EKDKVIEILRQQIENMtqlvGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRElEARVSDlelEKVKLV 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 774 SPSEQEERSIavdpstsksadsrwqkevamlrketEDLQQQCLYLNEEIEKQRNTFafaeKNFEVNYQELQREYTcllKI 853
Cdd:pfam15921 639 NAGSERLRAV-------------------------KDIKQERDQLLNEVKTSRNEL----NSLSEDYEVLKRNFR---NK 686
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 854 RDDLEATQTKQALEYESKLRALEEE---LLSKRGNPAAPKGKSSGIFPSETLEIGEV--VEKDTTELMEKLEVTKREKLE 928
Cdd:pfam15921 687 SEEMETTTNKLKMQLKSAQSELEQTrntLKSMEGSDGHAMKVAMGMQKQITAKRGQIdaLQSKIQFLEEAMTNANKEKHF 766
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1039770153 929 LSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELEL 973
Cdd:pfam15921 767 LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEV 811
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
255-771 |
5.28e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 65.81 E-value: 5.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 255 QIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRK---IENLNAKEIQEKQAL--IDELNTRVVEEEKKTVELKN 329
Cdd:TIGR04523 146 EIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIqknIDKIKNKLLKLELLLsnLKKKIQKNKSLESQISELKK 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 330 KVTTadellggLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELmrtveelqKRNLKDSWLETSAVRRVEQETQRKL 409
Cdd:TIGR04523 226 QNNQ-------LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKI--------KKQLSEKQKELEQNNKKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 410 SHLQAELDEMYGkqivQMKQELINQHMSQIEELKSQhKREMENTLkSDTNAAIS--KEQVNLMNAAINELNVRLQETHAQ 487
Cdd:TIGR04523 291 NQLKSEISDLNN----QKEQDWNKELKSELKNQEKK-LEEIQNQI-SQNNKIISqlNEQISQLKKELTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 488 KEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVE----DLKAEIVAASESRKE 563
Cdd:TIGR04523 365 LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEkeieRLKETIIKNNSEIKD 444
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 564 LElkheAEITNYKIKLEMLEKEKnavldrmaESQEAELERLrtqllfshEEELSKLKEDLEVEHRINIEKLKDNLGI-HY 642
Cdd:TIGR04523 445 LT----NQDSVKELIIKNLDNTR--------ESLETQLKVL--------SRSINKIKQNLEQKQKELKSKEKELKKLnEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 643 KQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRD-LQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLE 721
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDeLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQ 584
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1039770153 722 QEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIK 634
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
144-842 |
1.08e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.75 E-value: 1.08e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 144 QMVEKELAEKQHDIEELTQELEEmrasfgTEGLKQLQEFEAaikqRDGIItQLTANLQQARREKDdTMVEFLELTEQSQ- 222
Cdd:pfam15921 74 EHIERVLEEYSHQVKDLQRRLNE------SNELHEKQKFYL----RQSVI-DLQTKLQEMQMERD-AMADIRRRESQSQe 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 223 ----KLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENL 298
Cdd:pfam15921 142 dlrnQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 299 NAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH----EQLTQRNQ-EIQSL--KLELGNSQQNERKCSE 371
Cdd:pfam15921 222 ISKILRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHqdriEQLISEHEvEITGLteKASSARSQANSIQSQL 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 372 E-IKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDemygKQIVQMKQEL---------INQHMSQIEE 441
Cdd:pfam15921 302 EiIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELE----KQLVLANSELtearterdqFSQESGNLDD 377
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 442 -----LKSQHKREMENTLKSDTNAAI------SKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSN 510
Cdd:pfam15921 378 qlqklLADLHKREKELSLEKEQNKRLwdrdtgNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 511 DLLEEVRFLREQVQKARQTIAEQENRLSEARKSLS----TVEDLKAEI-------------VAASESRKELELKHEAEIT 573
Cdd:pfam15921 458 ESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLEsserTVSDLTASLqekeraieatnaeITKLRSRVDLKLQELQHLK 537
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 574 NYKIKLEMLEKEKNAVLDRMAESQEAeLERLR------TQLLFSHEEELSKLK-EDLEVEHRINIEKLKDNLGIHYKQQI 646
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQMAEKDKV-IEILRqqienmTQLVGQHGRTAGAMQvEKAQLEKEINDRRLELQEFKILKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 647 DGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNlQINELQKEIEILKQEEKEKGtleqevQE 726
Cdd:pfam15921 617 DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRN-ELNSLSEDYEVLKRNFRNKS------EE 689
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 727 LQLKTEQLEKQLKEKEDDLQE----------------------------KCAQLDAENNILKEEKRVLEDKLKMYSPSEQ 778
Cdd:pfam15921 690 METTTNKLKMQLKSAQSELEQtrntlksmegsdghamkvamgmqkqitaKRGQIDALQSKIQFLEEAMTNANKEKHFLKE 769
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 779 EERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQClyLNEEIEKQRNTFAFAEKNFEVNYQE 842
Cdd:pfam15921 770 EKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV--ANMEVALDKASLQFAECQDIIQRQE 831
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1871-2349 |
1.09e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 64.66 E-value: 1.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1871 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRL---QELESDQRRVEEERQLLCRQREAMRAEA 1947
Cdd:TIGR04523 155 EKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKKQNNQLKDNI 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1948 GPVEQQFLQETEKLMKEKLEVQcQAEKVRGDLQKQVKALEIDVEEQVSRFIELE---QEKNAELTDLRQQSQA-LEKQLE 2023
Cdd:TIGR04523 235 EKKQQEINEKTTEISNTQTQLN-QLKDEQNKIKKQLSEKQKELEQNNKKIKELEkqlNQLKSEISDLNNQKEQdWNKELK 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2024 KMRKFLDEQAIDREHERDVFQQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCselllskEQLQRDIQERN 2103
Cdd:TIGR04523 314 SELKNQEKKLEEIQNQISQNNKIISQLNEQIS---QLKKELTNSESENSEKQRELEEKQNEI-------EKLKKENQSYK 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2104 EEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEEQLEQFR---EELE 2180
Cdd:TIGR04523 384 QEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE---LLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiKNLD 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2181 NKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESD---SVSTRDQPMLFGKFAQL---IQEKEIEI 2254
Cdd:TIGR04523 461 NTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEekvKDLTKKISSLKEKIEKLeseKKEKESKI 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2255 DRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLE----------TQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVV 2324
Cdd:TIGR04523 541 SDLEDELNKDDFELKKENLEKEIDEKNKEIEELKqtqkslkkkqEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELE 620
|
490 500
....*....|....*....|....*
gi 1039770153 2325 STEQQREGARTLPEDEESFKHQLDK 2349
Cdd:TIGR04523 621 KAKKENEKLSSIIKNIKSKKNKLKQ 645
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
181-972 |
1.46e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.61 E-value: 1.46e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 181 EFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQIQFQhlQANETLQNSTLSRTATDLLQAKRQIFTQQ 260
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNE 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 261 QQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDR--KIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELL 338
Cdd:pfam02463 237 ERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQvlKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 339 gGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSwletsavrRVEQETQRKLSHLQAELDE 418
Cdd:pfam02463 317 -KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKL--------EQLEEELLAKKKLESERLS 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 419 MYGKQIVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVV 498
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 499 LGEKSALQSQSNDLLEEVRFLREQVQKARQ-TIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKI 577
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQKLEErSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAIST 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 578 KLEMLEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSK--LKEDLEVEHRINIEKLKDNLGIHYKQQID------GL 649
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKlpLKSIAVLEIDPILNLAQLDKATLEADEDDkrakvvEG 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 650 QNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQL 729
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 730 KTEQLEKQLKEKEDDLQEKC-AQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPStsksadsrwQKEVAMLRKET 808
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVqEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKS---------ELSLKEKELAE 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 809 EDLQQQCLYLNEEIEKQRNtfafaEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSKRGNPAA 888
Cdd:pfam02463 779 EREKTEKLKVEEEKEEKLK-----AQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAE 853
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 889 PKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRC 968
Cdd:pfam02463 854 EELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKY 933
|
....
gi 1039770153 969 GELE 972
Cdd:pfam02463 934 EEEP 937
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1973-2327 |
2.38e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.93 E-value: 2.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1973 EKVRGDLQKqvkaleidVEEQVSRFIELEQEKnaeltdlRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEH 2052
Cdd:TIGR02169 173 EKALEELEE--------VEENIERLDLIIDEK-------RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2053 QLKAvprIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEE--------IEKLECRVRELEQALLASA 2124
Cdd:TIGR02169 238 QKEA---IERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEeqlrvkekIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2125 EPFPKVEDQKRSGAVEADPELS----LEVQLQVERDATDRKQKEITNLEEQLEQFR---EELENKNDEVQELLMQLEIQR 2197
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAeieeLEREIEEERKRRDKLTEEYAELKEELEDLRaelEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2198 KESTTRLQELQQENRLFKDEIEKLGFAMKESDSvstrDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQlklttdNKVI 2277
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNA----AIAGIEAKINELEEEKEDKALEIKKQEWKLEQL------AADL 464
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 2278 EEQKEQIQDLETQIERLmsEREHEKKQRE-EEVEQLTGVVEKLQQEVVSTE 2327
Cdd:TIGR02169 465 SKYEQELYDLKEEYDRV--EKELSKLQRElAEAEAQARASEERVRGGRAVE 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2044-2364 |
3.37e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 3.37e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2044 QQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLAs 2123
Cdd:TIGR02169 680 RERLEGLKRELS---SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEN- 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2124 aepfpkvedqkrsgaveadpelslevqlqvERDATDRKQKEITNLEEQLEQFREELEnkndevqellmqlEIQRKESTTR 2203
Cdd:TIGR02169 756 ------------------------------VKSELKELEARIEELEEDLHKLEEALN-------------DLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2204 LQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLfGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLttDNKVIEEQKEQ 2283
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEK-EYLEKEIQELQEQRIDLKEQIKSIEKEIEN--LNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2284 IQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVET 2363
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
.
gi 1039770153 2364 T 2364
Cdd:TIGR02169 950 E 950
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
403-1161 |
4.81e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 4.81e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 403 QETQRKLSHLQAELdemYGKQIVQMKQELiNQHMSQIEELKSQHKREmentlksdtnaaisKEQVNLMNAAINELNVRLQ 482
Cdd:TIGR02168 216 KELKAELRELELAL---LVLRLEELREEL-EELQEELKEAEEELEEL--------------TAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 483 ETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIvaasesrk 562
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL-------- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 563 elelkhEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRtQLLFSHEEELSKLKEDLEvEHRINIEKLKDNLGihy 642
Cdd:TIGR02168 350 ------KEELESLEAELEELEAELEELESRLEE-LEEQLETLR-SKVAQLELQIASLNNEIE-RLEARLERLEDRRE--- 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 643 kqqidglQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLvnsksEEMNLQINELQKEIEILKQEEKEkgtLEQ 722
Cdd:TIGR02168 418 -------RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL-----ERLEEALEELREELEEAEQALDA---AER 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 723 EVQELQLKTEQLEkQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKmyspseqeersiaVDPSTSKSADSRWQKEVA 802
Cdd:TIGR02168 483 ELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELIS-------------VDEGYEAAIEAALGGRLQ 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 803 MLRKETEDLQQQCLYLNEEIEKQRNTF----AFAEKNFEVNYQELQREYTCLLKIRDDLEATQTK--------------- 863
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELGRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKlrkalsyllggvlvv 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 864 ----QALEYESKLRA------LEEELLSKRG--NPAAPKGKSSGIFPS-------ETLEIGE-----------VVEKDTT 913
Cdd:TIGR02168 629 ddldNALELAKKLRPgyrivtLDGDLVRPGGviTGGSAKTNSSILERRreieeleEKIEELEekiaelekalaELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 914 ELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQLLLRCGELELLANPSgTENAAVCPVQMSSY 993
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEA-EEELAEAEAEIEEL 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 994 QAglvmgKVGDSGGSISKISKDLAEESKPMIEDKIPF-KESGREQLLLPTRAQKPSHATVEPCESEKLQQELHALKAEQD 1072
Cdd:TIGR02168 788 EA-----QIEQLKEELKALREALDELRAELTLLNEEAaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1073 DLRLQMEAQRICLfvvysTHADQVRAHME---KEREEALCSLKDELISAQQKKIDELHKMHQCQLQNFKIQETGDEpLQV 1149
Cdd:TIGR02168 863 ELEELIEELESEL-----EALLNERASLEealALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG-LEV 936
|
810
....*....|..
gi 1039770153 1150 LIERLQQAVSEK 1161
Cdd:TIGR02168 937 RIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1575-2389 |
5.11e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 5.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1575 QQMERQREDQEQLQEEIKRLNEQLaqkSSIDTEHVVSERERVLLEELEALKQLPLAGRKELCCELRHSSTQTQDGHDDQE 1654
Cdd:TIGR02168 179 RKLERTRENLDRLEDILNELERQL---KSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1655 VEEQTLKDKTLERSPEdalldrnLSNERYALKKANNRLLKILLEVVKTTSAAEETIGRHV--LGILDRSSKGQTASSLLW 1732
Cdd:TIGR02168 256 EELTAELQELEEKLEE-------LRLEVSELEEEIEELQKELYALANEISRLEQQKQILRerLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1733 RSEADASAttcapEDCARAMDESipsypGTAIATHDSIWSKVTEEGAELSQRLVRSGfagpvidpENEELMLnissRLQA 1812
Cdd:TIGR02168 329 ESKLDELA-----EELAELEEKL-----EELKEELESLEAELEELEAELEELESRLE--------ELEEQLE----TLRS 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1813 AVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATEslHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKT 1892
Cdd:TIGR02168 387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE--LLKKLEEAELKELQAELEELEEELEELQEELERLEEALE 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1893 LFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEE----RQLLcRQREAMRAEAGPVEQQ--FLQETEKLMKEKL 1966
Cdd:TIGR02168 465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvKALL-KNQSGLSGILGVLSELisVDEGYEAAIEAAL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1967 EVQCQAEKVRgDLQKQVKALEIDVEEQVSR--FIELEQEKNAELTDLRQQSqalekqLEKMRKFLDeQAIDREHERDVFQ 2044
Cdd:TIGR02168 544 GGRLQAVVVE-NLNAAKKAIAFLKQNELGRvtFLPLDSIKGTEIQGNDREI------LKNIEGFLG-VAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2045 QEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKE------------KTDRCSELLLSKeqlQRDIQERNEEIEKLECR 2112
Cdd:TIGR02168 616 KALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgdlvrpggvitgGSAKTNSSILER---RREIEELEEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2113 VRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQ 2192
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELE---ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2193 LEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRdqpmlfgkfaqlIQEKEIEIDRLNEQFIKLQQQLKLTT 2272
Cdd:TIGR02168 770 LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE------------LTLLNEEAANLRERLESLERRIAATE 837
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2273 dnKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLtgvvEKLQQEVVSTEQQREGARtlpEDEESFKHQLDKVTA 2352
Cdd:TIGR02168 838 --RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL----EALLNERASLEEALALLR---SELEELSEELRELES 908
|
810 820 830
....*....|....*....|....*....|....*..
gi 1039770153 2353 EKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSL 2389
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1546-2321 |
5.19e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 5.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1546 EQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLAQKSSIDT--EHVVSERERVLLEELEA 1623
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQqkQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1624 LKQLPLAGRKElccelrhsstqtqdghDDQEVEEQTLKDKTLERSPEDALLDRNLSNERYALKKANNRLLKilLEVVKTT 1703
Cdd:TIGR02168 322 EAQLEELESKL----------------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--LEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1704 SAAEetIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAMDESIPSYPGTAIATHDSIWSKVTEEGAELSQ 1783
Cdd:TIGR02168 384 LRSK--VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1784 RLvrsgfagpvidpeneelmlnisSRLQAAVEKLLEAISETNTQLEH--AKVTQTELMRESFRQKQEATESLhcLEELRE 1861
Cdd:TIGR02168 462 AL----------------------EELREELEEAEQALDAAERELAQlqARLDSLERLQENLEGFSEGVKAL--LKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1862 RLQEESRAREQL--AEELNKAESVIDGYSDEKTLFERQiQEKTDIIEHLEQE----------VLCMNNRLQELESDQRRV 1929
Cdd:TIGR02168 518 LSGILGVLSELIsvDEGYEAAIEAALGGRLQAVVVENL-NAAKKAIAFLKQNelgrvtflplDSIKGTEIQGNDREILKN 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1930 EEERQLLCRQREAMRAEAGPVEQQFL----------QETEKLMKEKLE---VQCQAEKVR-------GDLQKQVKAL--- 1986
Cdd:TIGR02168 597 IEGFLGVAKDLVKFDPKLRKALSYLLggvlvvddldNALELAKKLRPGyriVTLDGDLVRpggvitgGSAKTNSSILerr 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1987 -EI-DVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVS 2064
Cdd:TIGR02168 677 rEIeELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2065 EHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpe 2144
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIA-- 834
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2145 lSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL---MQLEIQRKESTTRLQELQQENRLFKDEIEKL 2221
Cdd:TIGR02168 835 -ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLnerASLEEALALLRSELEELSEELRELESKRSEL 913
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2222 GFAMKESDSvstrdqpmLFGKFAQLIQEKEIEIDRLNEQFIKLQQ-------QLKLTTDNKvIEEQKEQIQDLETQIERL 2294
Cdd:TIGR02168 914 RRELEELRE--------KLAQLELRLEGLEVRIDNLQERLSEEYSltleeaeALENKIEDD-EEEARRRLKRLENKIKEL 984
|
810 820 830
....*....|....*....|....*....|....*..
gi 1039770153 2295 -------MSEREHEKKQREE---EVEQLTGVVEKLQQ 2321
Cdd:TIGR02168 985 gpvnlaaIEEYEELKERYDFltaQKEDLTEAKETLEE 1021
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
121-624 |
6.91e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 62.26 E-value: 6.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 121 REEEFSLDDSSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRAsfgtEGLKQLQEFEAAIKQRDGIITQLtANL 200
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE----ELEEAEEELEEAEAELAEAEEAL-LEA 370
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 201 QQARREKDDTMVEFLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFL 280
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 281 QEKLRAFEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELg 360
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL- 529
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 361 nsqqneRKCSEEIKELMRTVEE--LQKRNLKDswlETSAVRRVEQETQRKLSHLQAE-LDEMYGKQIVQMKQELINQHMS 437
Cdd:COG1196 530 ------IGVEAAYEAALEAALAaaLQNIVVED---DEVAAAAIEYLKAAKAGRATFLpLDKIRARAALAAALARGAIGAA 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 438 QIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAainelNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVR 517
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAA-----LRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 518 FLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQ 597
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
490 500
....*....|....*....|....*..
gi 1039770153 598 EAELERLRTQllfshEEELSKLKEDLE 624
Cdd:COG1196 756 LPEPPDLEEL-----ERELERLEREIE 777
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1918-2364 |
8.45e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.85 E-value: 8.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1918 RLQELESDQRRVEEERQllcrQREAMRAEAGPVEQQFLQETEKLMKEKLEvQCQAEKVRgdLQKQVKALEIDVEEQVSRF 1997
Cdd:COG4913 253 LLEPIRELAERYAAARE----RLAELEYLRAALRLWFAQRRLELLEAELE-ELRAELAR--LEAELERLEARLDALREEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1998 IELEQEknaeltdLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRI-QPVSEHQAREVEQLTN 2076
Cdd:COG4913 326 DELEAQ-------IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEfAALRAEAAALLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2077 HLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRV-----------RELEQALLASAEPFP--------KVEDQKRSG 2137
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKsniparllalrDALAEALGLDEAELPfvgelievRPEEERWRG 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2138 AVEA-----------DPE-----------LSLEVQLQVERDATDRKQKEITNLEEQ-----LE----QFREELEN----- 2181
Cdd:COG4913 479 AIERvlggfaltllvPPEhyaaalrwvnrLHLRGRLVYERVRTGLPDPERPRLDPDslagkLDfkphPFRAWLEAelgrr 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2182 ----KNDEVQELL-----MQLEIQRKESTTR----------------------LQELQQENRLFKDEIEKLGFAMKESDS 2230
Cdd:COG4913 559 fdyvCVDSPEELRrhpraITRAGQVKGNGTRhekddrrrirsryvlgfdnrakLAALEAELAELEEELAEAEERLEALEA 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2231 V--STRDQPMLFGKFAQLiQEKEIEIDRLNEQFIKLQQQL-KLTTDNKVIEEQKEQIQDLETQIERLMSERE---HEKKQ 2304
Cdd:COG4913 639 EldALQERREALQRLAEY-SWDEIDVASAEREIAELEAELeRLDASSDDLAALEEQLEELEAELEELEEELDelkGEIGR 717
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 2305 REEEVEQLTGVVEKLQQEVVSTEQ--------------QREGARTLPED-EESFKHQLDKVTAEKLVLEQQVETT 2364
Cdd:COG4913 718 LEKELEQAEEELDELQDRLEAAEDlarlelralleerfAAALGDAVERElRENLEERIDALRARLNRAEEELERA 792
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
325-824 |
1.06e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 1.06e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 325 VELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKR--NLKDSwletsavrrvE 402
Cdd:TIGR04523 22 VGYKNIANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQikDLNDK----------L 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 403 QETQRKLSHLQAELDEMygKQIVQMKQELINQHMSQIEELKSQHKREMENtlKSDTNAAISKEQVNLmnaaiNELNVRLQ 482
Cdd:TIGR04523 92 KKNKDKINKLNSDLSKI--NSEIKNDKEQKNKLEVELNKLEKQKKENKKN--IDKFLTEIKKKEKEL-----EKLNNKYN 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 483 ETHAQKEELKGELGVVLGEKS-------------------------------ALQSQSNDLLEEVRFLREQVQKARQTIA 531
Cdd:TIGR04523 163 DLKKQKEELENELNLLEKEKLniqknidkiknkllklelllsnlkkkiqknkSLESQISELKKQNNQLKDNIEKKQQEIN 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 532 EQENRLSEARKSLSTVEDLKAEIVAASEsRKELELKH--------EAEITNYKIKLEMLEKEKNAVLDRMA----ESQEA 599
Cdd:TIGR04523 243 EKTTEISNTQTQLNQLKDEQNKIKKQLS-EKQKELEQnnkkikelEKQLNQLKSEISDLNNQKEQDWNKELkselKNQEK 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 600 ELERLRTQLLFShEEELSKLKEDLEvehriNIEKLKDNLGIHyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENS 679
Cdd:TIGR04523 322 KLEEIQNQISQN-NKIISQLNEQIS-----QLKKELTNSESE-NSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 680 KLrdlqeclvNSKSEEMNLQINELQKEIEILkqeEKEKGTLEQEVQELQLKTEQLEKQLKekedDLQEKCAQLDAENNIL 759
Cdd:TIGR04523 395 DL--------ESKIQNQEKLNQQKDEQIKKL---QQEKELLEKEIERLKETIIKNNSEIK----DLTNQDSVKELIIKNL 459
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 760 KEEKRVLEDKLKMYSPSEQEERSIAVDpsTSKSADSRwQKEVAMLRKETEDLQQQCLYLNEEIEK 824
Cdd:TIGR04523 460 DNTRESLETQLKVLSRSINKIKQNLEQ--KQKELKSK-EKELKKLNEEKKELEEKVKDLTKKISS 521
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2002-2221 |
1.14e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 60.55 E-value: 1.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2002 QEKNAELTDLRQQSQALEKQLEKMRKfldeqaidrehERDVFQQEIQKLEHQLKAvpriqpvsehQAREVEQLTNHLKEK 2081
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKK-----------EEKALLKQLAALERRIAA----------LARRIRALEQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2082 TDRCSELLLSKEQLQRDIQERNEEIEKlecRVRELEQ-------ALLASAEPFPKV------------EDQKRSGAVEAD 2142
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAE---LLRALYRlgrqpplALLLSPEDFLDAvrrlqylkylapARREQAEELRAD 158
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039770153 2143 PElslevQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKL 2221
Cdd:COG4942 159 LA-----ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3003-3340 |
1.29e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.70 E-value: 1.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3003 REQGTEKSSQELLDCSMQQKQSLEMQLELSSLRDRAAELQEQlSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEA 3082
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK-AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3083 FRSEVKEKTDEIHflsdtLAREQKNSLELQWALEKEKARsghhegrEKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLN 3162
Cdd:PTZ00121 1516 KKAEEAKKADEAK-----KAEEAKKADEAKKAEEKKKAD-------ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3163 ESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREdggqpppalpSEDLLK--ELQ 3240
Cdd:PTZ00121 1584 EEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE----------AEEKKKaeELK 1653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3241 KQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANT--QGQKKMQELQSKVEELQRQLQEKRQQVY 3318
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKaeELKKKEAEEKKKAEELKKAEEENKIKAE 1733
|
330 340
....*....|....*....|..
gi 1039770153 3319 KLDLEGKRLQGLMQEFQKQELE 3340
Cdd:PTZ00121 1734 EAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
147-748 |
1.47e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 147 EKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAI---KQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQK 223
Cdd:TIGR04523 151 EKELEKLNNKYNDLKKQKEELENEL-NLLEKEKLNIQKNIdkiKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQ 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 224 LQIQFQHLQANETLQNSTLSRTATDLLQA-------KRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIE 296
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQLkdeqnkiKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWN 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 297 NLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGL-------HEQLTQRNQEIQSLKlelgnsQQNERKc 369
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSesensekQRELEEKQNEIEKLK------KENQSY- 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 370 SEEIKELmrtveELQKRNLKdswLETSAVRRVEQETQRKLSHLQAELDEMyGKQIVQMKQELINQHmSQIEELKSQhKRE 449
Cdd:TIGR04523 383 KQEIKNL-----ESQINDLE---SKIQNQEKLNQQKDEQIKKLQQEKELL-EKEIERLKETIIKNN-SEIKDLTNQ-DSV 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 450 MENTLKS-DTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQ 528
Cdd:TIGR04523 452 KELIIKNlDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLES 531
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 529 TIAEQENRLSEARKSLSTVED------LKAEIvaaSESRKELE-LKHE-----AEITNYKIKLEMLEKEKNAVLDRMAEs 596
Cdd:TIGR04523 532 EKKEKESKISDLEDELNKDDFelkkenLEKEI---DEKNKEIEeLKQTqkslkKKQEEKQELIDQKEKEKKDLIKEIEE- 607
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 597 qeaelerlRTQLLFSHEEELSKLKEDLE--VEHRINIEKLKDNLgihyKQQIDGLQNEMNRKMESmqceTDNLITQQNQL 674
Cdd:TIGR04523 608 --------KEKKISSLEKELEKAKKENEklSSIIKNIKSKKNKL----KQEVKQIKETIKEIRNK----WPEIIKKIKES 671
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 675 ILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKgtleqEVQELQLKTEQLEKQLKEKEDDLQEK 748
Cdd:TIGR04523 672 KTKIDDIIELMKDWLKELSLHYKKYITRMIRIKDLPKLEEKYK-----EIEKELKKLDEFSKELENIIKNFNKK 740
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2967-3286 |
1.53e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2967 EYHTAMDCLQKADRRSLLAEIEDLRAQINGGKMTLEREQGTEKSSQELLDcsMQQKQSLEMQLELSSLRDRAAELQEQLS 3046
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA--ELEAELEELRLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3047 SEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARsghhE 3126
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA----L 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3127 GREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKST 3206
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3207 LDKERELYAQLQSREdggqpppaLPSEDLLKELQKQLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQ 3286
Cdd:COG1196 448 AEEEAELEEEEEALL--------ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL 519
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1871-2395 |
1.53e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.80 E-value: 1.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1871 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNR-------LQELESDQRRVEEERQLLCRQREAM 1943
Cdd:TIGR04523 43 KTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKlkknkdkINKLNSDLSKINSEIKNDKEQKNKL 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1944 RAEAGPVEQQFLQETEKLMKEKLEV---QCQAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEK 2020
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIkkkEKELEKLNNKYNDLKKQKE-ELENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2021 QLEKMRKFLDEQaidreherDVFQQEIQKLEHQLKavpRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQ 2100
Cdd:TIGR04523 202 LLSNLKKKIQKN--------KSLESQISELKKQNN---QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2101 ERNEEIEKLECRVRELE---QALLASAEPFPKVEDQKRSGAVEADPElSLEVQLQVERDATDRKQKEITNLEEQLEQFRE 2177
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEkqlNQLKSEISDLNNQKEQDWNKELKSELK-NQEKKLEEIQNQISQNNKIISQLNEQISQLKK 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2178 ELENKNDEVQELLMQLEiqrkESTTRLQELQQENRLFKDEIEKLgfamkesdSVSTRDQPMLFGKFAQLIQEKEIEIDRL 2257
Cdd:TIGR04523 350 ELTNSESENSEKQRELE----EKQNEIEKLKKENQSYKQEIKNL--------ESQINDLESKIQNQEKLNQQKDEQIKKL 417
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2258 NEQFIKLQQQLKL-----TTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREE---EVEQLTGVVEKLQQEVVSTEQq 2329
Cdd:TIGR04523 418 QQEKELLEKEIERlketiIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrSINKIKQNLEQKQKELKSKEK- 496
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039770153 2330 regartlpedeesfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2395
Cdd:TIGR04523 497 ----------------ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDE 546
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2935-3254 |
1.69e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.11 E-value: 1.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2935 LATFQTELTSLSTRDVDGLLNSLEQRIQEQgieyhtamdclqKADRRSLLAEIEDLRAQINGGKMTLEREQGTEKSSQEL 3014
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEEL------------EAELEELEAELAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3015 LDCSMQQKQSLEMQLE-LSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDE 3093
Cdd:COG1196 290 EYELLAELARLEQDIArLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3094 ihflsdtLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKm 3173
Cdd:COG1196 370 -------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEE- 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3174 lhdAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppALPSEDLLKELQKQLEEKHSRIVEL 3253
Cdd:COG1196 442 ---EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAE-----AAARLLLLLEAEADYEGFLEGVKAA 513
|
.
gi 1039770153 3254 L 3254
Cdd:COG1196 514 L 514
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
282-879 |
1.70e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 1.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 282 EKLRAFEMEKDRKIENlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADEL---LGGLHEQLTQRNQEIQSLKLE 358
Cdd:PRK03918 182 EKFIKRTENIEELIKE-KEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKELESLEGSKRKLEEK 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 359 LGNSQQNERKCSEEIKELMRTVEELQKrnLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGK-QIVQMKQELINQHMS 437
Cdd:PRK03918 261 IRELEERIEELKKEIEELEEKVKELKE--LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEiNGIEERIKELEEKEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 438 QIEELKSQhKREMENTLksdtnaAISKEQVNLMNaainelnvRLQETHAQKEELKGELGVVLGEKSalqsqsNDLLEEVR 517
Cdd:PRK03918 339 RLEELKKK-LKELEKRL------EELEERHELYE--------EAKAKKEELERLKKRLTGLTPEKL------EKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 518 FLREQVQKARQTIAEQENRLSEARKSLST-VEDLKAEIVAASESRKELELKHEAEITN-YKIKLEMLEKEKnAVLDRMAE 595
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKEIKELKKaIEELKKAKGKCPVCGRELTEEHRKELLEeYTAELKRIEKEL-KEIEEKER 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 596 SQEAELERLRTQLlfSHEEELSKLKEDLEvehriNIEKLKDNLGIHYKQqidglqnEMNRKMEsmqcetdnlitqqnqli 675
Cdd:PRK03918 477 KLRKELRELEKVL--KKESELIKLKELAE-----QLKELEEKLKKYNLE-------ELEKKAE----------------- 525
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 676 lensklrdlqeclvnsKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAE 755
Cdd:PRK03918 526 ----------------EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEE 589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 756 nniLKEEKRVLEDKLKMY-----SPSEQEERSIAVDPSTSKSADSR-----WQKEVAMLRKETEDLQQqcLYLNEEIEKQ 825
Cdd:PRK03918 590 ---LEERLKELEPFYNEYlelkdAEKELEREEKELKKLEEELDKAFeelaeTEKRLEELRKELEELEK--KYSEEEYEEL 664
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 826 RNtfafaeknfevNYQELQREYTCLLKIRDDLEatqtKQALEYESKLRALEEEL 879
Cdd:PRK03918 665 RE-----------EYLELSRELAGLRAELEELE----KRREEIKKTLEKLKEEL 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1809-2221 |
5.68e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 5.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1809 RLQAAVEKLLEAISETNTQLEHAKVTQTELmRESFRQKQEATESLhcleelrerLQEESRAREQLAEELNKAESVidgyS 1888
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEEL-EEELEQLRKELEEL---------SRQISALRKDLARLEAEVEQL----E 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1889 DEKTLFERQIQEKTDIIEHLEQevlcmnnRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEV 1968
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEE-------RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEA 819
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1969 QCQAEKVRGdlqkqvkaLEIDVEEQVSRFIELEQEKNaeltDLRQQSQALEKQLEKMRKFLDEQAIDREH---ERDVFQQ 2045
Cdd:TIGR02168 820 ANLRERLES--------LERRIAATERRLEDLEEQIE----ELSEDIESLAAEIEELEELIEELESELEAllnERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2046 EIQKLEHQLkavpriqpvsEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAE 2125
Cdd:TIGR02168 888 ALALLRSEL----------EELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAE 957
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2126 PFPKvedqkrsgAVEADPElslEVQLQVERDATDRKQKEITNLE-----EQLEQFREELENKNDEVQELLMQLE--IQR- 2197
Cdd:TIGR02168 958 ALEN--------KIEDDEE---EARRRLKRLENKIKELGPVNLAaieeyEELKERYDFLTAQKEDLTEAKETLEeaIEEi 1026
|
410 420
....*....|....*....|....*.
gi 1039770153 2198 -KESTTRLQE-LQQENRLFKDEIEKL 2221
Cdd:TIGR02168 1027 dREARERFKDtFDQVNENFQRVFPKL 1052
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1905-2309 |
6.18e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 6.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1905 IEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAmraeagpveqqfLQETEKLMKEKLEVQcQAEKVRGDLQKQVK 1984
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREA------------LQRLAEYSWDEIDVA-SAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1985 ALEidveeqvsrfieleqEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDR---EHERDVFQQEIQKLEHQLKAVPRIQ 2061
Cdd:COG4913 679 RLD---------------ASSDDLAALEEQLEELEAELEELEEELDELKGEIgrlEKELEQAEEELDELQDRLEAAEDLA 743
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2062 PVSEHqarevEQLTNHLKEKTDRCSELLLSkEQLQRDIQERNEEIEKLEcrvRELEQALLASAEPFPkvedqkrSGAVEA 2141
Cdd:COG4913 744 RLELR-----ALLEERFAAALGDAVERELR-ENLEERIDALRARLNRAE---EELERAMRAFNREWP-------AETADL 807
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2142 DPELSlevqlqvERDATDRKQKEITN--LEEQLEQFREEL-ENKNDEVQELLMQLEiqrkesttrlqelqQENRLFKDEI 2218
Cdd:COG4913 808 DADLE-------SLPEYLALLDRLEEdgLPEYEERFKELLnENSIEFVADLLSKLR--------------RAIREIKERI 866
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2219 EKLGFAMKESDsvstrdqpmlFGkfaqliQEKEIEID---RLNEQFIKLQQQLK------LTTDNKVIEEQKEQIQDLet 2289
Cdd:COG4913 867 DPLNDSLKRIP----------FG------PGRYLRLEarpRPDPEVREFRQELRavtsgaSLFDEELSEARFAALKRL-- 928
|
410 420
....*....|....*....|
gi 1039770153 2290 qIERLMSEREHEKKQREEEV 2309
Cdd:COG4913 929 -IERLRSEEEESDRRWRARV 947
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1808-2380 |
6.29e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 59.16 E-value: 6.29e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1808 SRLQAAVEK------LLEAISETNTQLEHAKVTQTEL--MRESFRQKQEATEslhcleelrerLQEESRAREQLAEELNK 1879
Cdd:COG4913 238 ERAHEALEDareqieLLEPIRELAERYAAARERLAELeyLRAALRLWFAQRR-----------LELLEAELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1880 AEsvidgysDEKTLFERQIQEKTDIIEHLEQEVLcmNN---RLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQ 1956
Cdd:COG4913 307 LE-------AELERLEARLDALREELDELEAQIR--GNggdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1957 ETEKLmkekLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKN---AELTDLRQQSQALEKQLEKMRKFLDEQ- 2032
Cdd:COG4913 378 SAEEF----AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELReleAEIASLERRKSNIPARLLALRDALAEAl 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2033 -------------------------AIDR-------------EHERDV--------FQQEI--QKLEHQLKAVPRIQP-- 2062
Cdd:COG4913 454 gldeaelpfvgelievrpeeerwrgAIERvlggfaltllvppEHYAAAlrwvnrlhLRGRLvyERVRTGLPDPERPRLdp 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2063 --------VSEHQARE-----------------VEQLTNH---------------LKEKTDR---CSELLL------SKE 2093
Cdd:COG4913 534 dslagkldFKPHPFRAwleaelgrrfdyvcvdsPEELRRHpraitragqvkgngtRHEKDDRrriRSRYVLgfdnraKLA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2094 QLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEAD-PELSLEV-QLQVERDATDRKQKEITNLEEQ 2171
Cdd:COG4913 614 ALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDvASAEREIaELEAELERLDASSDDLAALEEQ 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2172 LEQFREELENKNDEVQELlmQLEIQRKEST-TRLQELQQENRLFKDEIEKLGfamkesdsvSTRDQPMLFGKFAQLIQEK 2250
Cdd:COG4913 694 LEELEAELEELEEELDEL--KGEIGRLEKElEQAEEELDELQDRLEAAEDLA---------RLELRALLEERFAAALGDA 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2251 eieidRLNEQFIKLQQQlklttdnkvIEEQKEQIQDLETQIERLMseREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQR 2330
Cdd:COG4913 763 -----VERELRENLEER---------IDALRARLNRAEEELERAM--RAFNREWPAETADLDADLESLPEYLALLDRLEE 826
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 2331 EGartLPEDEESFKHQLDKVTAEKLV-----LEQQVETTNQVMTHMNNVLKEINF 2380
Cdd:COG4913 827 DG---LPEYEERFKELLNENSIEFVAdllskLRRAIREIKERIDPLNDSLKRIPF 878
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1972-2500 |
8.33e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 8.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1972 AEKVRGDLQKQVKALEIDV----------EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKfLDEQAIDREHERD 2041
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELaeldeeieryEEQREQARETRDEADEVLEEHEERREELETLEAEIED-LRETIAETERERE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2042 VFQQEIQKLEHQL----KAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELE 2117
Cdd:PRK02224 276 ELAEEVRDLRERLeeleEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2118 QAllasaepfpkvEDQKRSGAVEadpelsLEVQLQVERDATDRKQKEITNLEEQLEQFREELEN---KNDEVQELLMQLE 2194
Cdd:PRK02224 356 ER-----------AEELREEAAE------LESELEEAREAVEDRREEIEELEEEIEELRERFGDapvDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2195 IQRKESTTRLQELQQENRLFKDEIEKlGFAMKESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQfiklqqqlklttdn 2274
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEE-AEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAE-------------- 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2275 kvIEEQKEQIQDLETQIERLMSEREHEKkQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEK 2354
Cdd:PRK02224 484 --LEDLEEEVEEVEERLERAEDLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAA 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2355 LVLEQQVETTNQVmthmnnvLKEINFKMDQITQSLCNLNKECASNEELPSLPKEsvhmtvhelgsdnlqpedapAQDVTK 2434
Cdd:PRK02224 561 AEAEEEAEEAREE-------VAELNSKLAELKERIESLERIRTLLAAIADAEDE--------------------IERLRE 613
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039770153 2435 PLEKQTSLTRLQKSPEASRTQEIESLASSV-GAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQ 2500
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEYLEQVEEKLDELREERDDLQ 680
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
288-836 |
1.35e-07 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 57.81 E-value: 1.35e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 288 EMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNER 367
Cdd:pfam05483 107 KLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYM 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 368 KCSEEIKELMRTVEELqkrnlkdswletsavrRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMSQIEELKSQhK 447
Cdd:pfam05483 187 DLNNNIEKMILAFEEL----------------RVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQ-I 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 448 REMENTLKSDTNA-AISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVlgeKSALQSQsndlLEEVRFLREQVQKA 526
Cdd:pfam05483 250 TEKENKMKDLTFLlEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDI---KMSLQRS----MSTQKALEEDLQIA 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 527 RQTI----AEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKE---KNAVLDRMAE---S 596
Cdd:pfam05483 323 TKTIcqltEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMElqkKSSELEEMTKfknN 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 597 QEAELERLRT-----QLLFSHEEELSKLKEDLEVEHRINI------EKLKDNLGI----------HYKQQIDGLQNEMNR 655
Cdd:pfam05483 403 KEVELEELKKilaedEKLLDEKKQFEKIAEELKGKEQELIfllqarEKEIHDLEIqltaiktseeHYLKEVEDLKTELEK 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 656 ---KMESMQCETDNLITQQNQLILENS----KLRDLQECLVNSKSEE--MNLQINELQ-KEIEILKQEEKEKGTLEQEVQ 725
Cdd:pfam05483 483 eklKNIELTAHCDKLLLENKELTQEASdmtlELKKHQEDIINCKKQEerMLKQIENLEeKEMNLRDELESVREEFIQKGD 562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 726 ELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLR 805
Cdd:pfam05483 563 EVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLE 642
|
570 580 590
....*....|....*....|....*....|.
gi 1039770153 806 KETEDLQQQCLYLNEEIEKQRNTFAFAEKNF 836
Cdd:pfam05483 643 LELASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1868-2294 |
1.56e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.47 E-value: 1.56e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1868 RAREQLAEELNKAESVIDGYS---DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQL--LCRQREA 1942
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAelqEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELaeLPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1943 MRAEagpveqqfLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQL 2022
Cdd:COG4717 151 LEER--------LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEEL 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2023 EKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQER 2102
Cdd:COG4717 223 EELEE--ELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2103 NEEIEKLEC--RVRELEQALLAS-AEPFPKVEDQKRSGAVEADPELSlEVQLQVERDATDRKQKEITNLEEQLEQFREEL 2179
Cdd:COG4717 301 GKEAEELQAlpALEELEEEELEElLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQLEELEQEIAALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2180 ENKNDEvqELLMQLEIQRkesttRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQpmLFGKFAQL---IQEKEIEIDR 2256
Cdd:COG4717 380 GVEDEE--ELRAALEQAE-----EYQELKEELEELEEQLEELLGELEELLEALDEEE--LEEELEELeeeLEELEEELEE 450
|
410 420 430
....*....|....*....|....*....|....*...
gi 1039770153 2257 LNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERL 2294
Cdd:COG4717 451 LREELAELEAELEQLEEDGELAELLQELEELKAELREL 488
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1798-2222 |
1.72e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1798 ENEELMLNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEEL 1877
Cdd:COG1196 348 EAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1878 NKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLL--CRQREAMRAEAGPVEQQFL 1955
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELaeAAARLLLLLEAEADYEGFL 507
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1956 QETEKLmkEKLEVQCQAEKVRGDLQKQVKALEIDVE---------------EQVSRFIELEQEKN---AELTDLRQQSQA 2017
Cdd:COG1196 508 EGVKAA--LLLAGLRGLAGAVAVLIGVEAAYEAALEaalaaalqnivveddEVAAAAIEYLKAAKagrATFLPLDKIRAR 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2018 LEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQR 2097
Cdd:COG1196 586 AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGG 665
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2098 DIQERNEEIEKLECRVRELEQALlasaepfpkvEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFRE 2177
Cdd:COG1196 666 SRRELLAALLEAEAELEELAERL----------AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE 735
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1039770153 2178 ELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLG 2222
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1819-2117 |
2.91e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 2.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1819 EAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAesvidgYSDEKTLFERQI 1898
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMA------MERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1899 QEKTDIIEHLEQEVLCMN-NRLQELEsdqrRVEEERQllcRQREAMRAEAGPVEQQFLQETEK------LMKEKLEVQCQ 1971
Cdd:pfam17380 356 EERKRELERIRQEEIAMEiSRMRELE----RLQMERQ---QKNERVRQELEAARKVKILEEERqrkiqqQKVEMEQIRAE 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1972 AEKVRgdlQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQK-- 2049
Cdd:pfam17380 429 QEEAR---QREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEErk 505
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 2050 ---LEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELE 2117
Cdd:pfam17380 506 qamIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2957-3258 |
3.01e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2957 LEQRIQEQGIEYHTAMDCLQ--KADRRSLLAEIEDLRAQINGGKMTLER-----EQGTEKSSQELLDCSMQQKQSLEMQL 3029
Cdd:TIGR02168 689 LEEKIAELEKALAELRKELEelEEELEQLRKELEELSRQISALRKDLARleaevEQLEERIAQLSKELTELEAEIEELEE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3030 ELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELgTTLKAQHKRLKE--------LEAFRSEVKEKTDEIHFLSDTL 3101
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREAL-DELRAELTLLNEeaanlrerLESLERRIAATERRLEDLEEQI 847
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3102 AREQKNSLELQWALEKEKArsghhegrEKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSE 3181
Cdd:TIGR02168 848 EELSEDIESLAAEIEELEE--------LIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEE 919
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039770153 3182 EQGRNLGLQALLESEQVRIQEMKSTLdkeRELYaQLQSREDGGQPPPALPSEDLLKELQKQLEEKHSRI--VELLSETE 3258
Cdd:TIGR02168 920 LREKLAQLELRLEGLEVRIDNLQERL---SEEY-SLTLEEAEALENKIEDDEEEARRRLKRLENKIKELgpVNLAAIEE 994
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
268-615 |
3.11e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 3.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 268 KKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQALIdELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQ 347
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGY-ELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 348 RNQEIQSLKLELGN-SQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVRRVEQETQRKLSHLQAELdemygkqivQ 426
Cdd:TIGR02169 263 LEKRLEEIEQLLEElNKKIKDLGEEEQLRVKEKIGELE--------AEIASLERSIAEKERELEDAEERL---------A 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 427 MKQELINQHMSQIEELKSQhkREMENTLKSDTNAAISKEQvnlmnAAINELNVRLQETHAQKEELKGELGVVLGEKSALQ 506
Cdd:TIGR02169 326 KLEAEIDKLLAEIEELERE--IEEERKRRDKLTEEYAELK-----EELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 507 SQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSL----STVEDLKAEIVAASESRKELelkhEAEITNYKIKLEML 582
Cdd:TIGR02169 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIneleEEKEDKALEIKKQEWKLEQL----AADLSKYEQELYDL 474
|
330 340 350
....*....|....*....|....*....|...
gi 1039770153 583 EKEKNAVLDRMAESQEaELERLRTQLLFSHEEE 615
Cdd:TIGR02169 475 KEEYDRVEKELSKLQR-ELAEAEAQARASEERV 506
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
2047-2317 |
3.28e-07 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 56.40 E-value: 3.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2047 IQKLEHQLKAV--PRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELeqallasa 2124
Cdd:COG2433 382 LEELIEKELPEeePEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA-------- 453
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2125 epfpkveDQKRSGAVEADPELSlevqlqverdatdRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRL 2204
Cdd:COG2433 454 -------RSEERREIRKDREIS-------------RLDREIERLERELEEERERIEELKRKLERLKELWKLEHSGELVPV 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2205 QELQQenrLFKDEIEKL--GFAMKESDSVSTRDqPMLFGK-FAQLIQEKEIE-IDRLNEQFIKLQQQLKlttDNK--VIE 2278
Cdd:COG2433 514 KVVEK---FTKEAIRRLeeEYGLKEGDVVYLRD-ASGAGRsTAELLAEAGPRaVIVPGELSEAADEVLF---EEGipVLP 586
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2279 EQKEQIQ-----------DLETQIERLmsEREHEKKQREEEVEQLTGVVE 2317
Cdd:COG2433 587 AEDVTIQevddlavvdeeELEAAIEDW--EERAEERRREKKAEMLERLIS 634
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1544-2109 |
5.52e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.10 E-value: 5.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1544 LNEQLEDMRQELVRQYEEHQQATEMLRQAHM------QQMERQREDQEQLQEEIKRLNEQLAQ-KSSIDTEHVVSERERV 1616
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAelarleQDIARLEERRRELEERLEELEEELAElEEELEELEEELEELEE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1617 LLEELEALKQLPLAGRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSpEDALLDRNLSNERYALKKANNRLLKIL 1696
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA-ELAAQLEELEEAEEALLERLERLEEEL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1697 LEVVKTTSAAEETIGRHVLGILDRSSKGQTASSLLWRSEADASATTCAPEDCARAMDEsipsypgtaiaTHDSIWSKVTE 1776
Cdd:COG1196 424 EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE-----------LLEELAEAAAR 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1777 EGAELSQRLVRSGFAGPVIDPENEELMLNISSRLQ------AAVEKLLEAISETNTQLEHAKVTQTELMRESF--RQKQE 1848
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAvligveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYlkAAKAG 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1849 ATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEvlcmNNRLQELESDQRR 1928
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA----LRRAVTLAGRLRE 648
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1929 VEEERQLLcRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAEL 2008
Cdd:COG1196 649 VTLEGEGG-SAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2009 TDLRQQSQALEKQLEKMRKFLDEQAIDREHE---RDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDrc 2085
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEppdLEELERELERLEREIEALGPVNLLAIEEYEELEERYDFLSEQRE-- 805
|
570 580
....*....|....*....|....
gi 1039770153 2086 sELLLSKEQLQRDIQERNEEIEKL 2109
Cdd:COG1196 806 -DLEEARETLEEAIEEIDRETRER 828
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
146-639 |
5.87e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 5.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 146 VEKELAEKQHDIEELTQELEEMRASFGT------------EGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVE 213
Cdd:PRK03918 198 KEKELEEVLREINEISSELPELREELEKlekevkeleelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 214 FLELTEQSQKLQiqfqhlqaNETLQNSTLSRTATDLLQAKRQIftqqqqlqdyQKKEEDLQAQISFLQEKLrafemekdr 293
Cdd:PRK03918 278 LEEKVKELKELK--------EKAEEYIKLSEFYEEYLDELREI----------EKRLSRLEEEINGIEERI--------- 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 294 kienlnaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLH--EQLTQR--NQEIQSLKLELGNSQQNERKC 369
Cdd:PRK03918 331 -------KELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEelERLKKRltGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 370 SEEIKELMRTVEELQKR--NLKDSWLETSAVRRVEQETQRKLS-HLQAELDEMYGKQIVQMKQELInQHMSQIEELKSQh 446
Cdd:PRK03918 404 EEEISKITARIGELKKEikELKKAIEELKKAKGKCPVCGRELTeEHRKELLEEYTAELKRIEKELK-EIEEKERKLRKE- 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 447 KREMENTLKSDTNAAISKEQVNLMNAAINELNV----RLQETHAQKEELKGELGVVLGEKSALQS---QSNDLLEEVRFL 519
Cdd:PRK03918 482 LRELEKVLKKESELIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKSLKKeleKLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 520 REQVQKARQTIAEQENRLSEarKSLSTVEDLKAEI----------VAASESRKELELKHE-------------AEITNYK 576
Cdd:PRK03918 562 EKKLDELEEELAELLKELEE--LGFESVEELEERLkelepfyneyLELKDAEKELEREEKelkkleeeldkafEELAETE 639
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039770153 577 IKLEMLEKEKNAVLDRMAESQEAELERLRTQL---LFSHEEELSKLKEDLEvEHRINIEKLKDNLG 639
Cdd:PRK03918 640 KRLEELRKELEELEKKYSEEEYEELREEYLELsreLAGLRAELEELEKRRE-EIKKTLEKLKEELE 704
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3025-3317 |
7.80e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 7.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3025 LEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLARE 3104
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3105 QKNSLELQWALEKEKARsghhegreKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQG 3184
Cdd:TIGR02168 753 SKELTELEAEIEELEER--------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3185 RNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSRedggqpppalpsedlLKELQKQLEEKHSRIVELLSETEKykldS 3264
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAE---------------IEELEELIEELESELEALLNERAS----L 885
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1039770153 3265 LQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQV 3317
Cdd:TIGR02168 886 EEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
150-964 |
7.91e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 55.57 E-value: 7.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 150 LAEKQHDIEELTQELEEMRASFG---TEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQI 226
Cdd:pfam01576 45 LQEQLQAETELCAEAEEMRARLAarkQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 227 QFQHLQA------NETL----QNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDL----QAQISFLQEKLRA-----F 287
Cdd:pfam01576 125 EKVTTEAkikkleEDILlledQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLknkhEAMISDLEERLKKeekgrQ 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 288 EMEKDRKIENLNAKEIQEK----QALIDELNTRVVEEEKktvELKNKVTTADElLGGLHEQLTQRNQEIQSLKLELGNSQ 363
Cdd:pfam01576 205 ELEKAKRKLEGESTDLQEQiaelQAQIAELRAQLAKKEE---ELQAALARLEE-ETAQKNNALKKIRELEAQISELQEDL 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 364 QNERKCSEEIKELMRTV-EELQ--KRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMkQELINQHMSQIE 440
Cdd:pfam01576 281 ESERAARNKAEKQRRDLgEELEalKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQL-QEMRQKHTQALE 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 441 ELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLR 520
Cdd:pfam01576 360 ELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQ 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 521 EQVQKARQTIAEQENRLSEARKSLSTVED--LKAEIVAASESRKELELKHeaeitnykiKLEMLEKEKNAVLDRMAESQE 598
Cdd:pfam01576 440 SELESVSSLLNEAEGKNIKLSKDVSSLESqlQDTQELLQEETRQKLNLST---------RLRQLEDERNSLQEQLEEEEE 510
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 599 A------ELERLRTQL-------------LFSHEEELSKLKEDLE---------VEHRINIEKLKDNLgihyKQQIDGL- 649
Cdd:pfam01576 511 AkrnverQLSTLQAQLsdmkkkleedagtLEALEEGKKRLQRELEaltqqleekAAAYDKLEKTKNRL----QQELDDLl 586
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 650 -----QNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS----------EEMNLQINELQKEIEILKQE- 713
Cdd:pfam01576 587 vdldhQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKEtralslaralEEALEAKEELERTNKQLRAEm 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 714 -----------------EKEKGTLEQEVQELQLKTEQLEKQLKEKED-------DLQEKCAQ----LDAENNILKEEKRV 765
Cdd:pfam01576 667 edlvsskddvgknvhelERSKRALEQQVEEMKTQLEELEDELQATEDaklrlevNMQALKAQferdLQARDEQGEEKRRQ 746
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 766 LEDKLKMYSPSEQEERSIAVDPSTSKsadsrwqKEVAMLRKETEDLQQQCLYLNEEIEKQRntfafaeKNFEVNYQELQR 845
Cdd:pfam01576 747 LVKQVRELEAELEDERKQRAQAVAAK-------KKLELDLKELEAQIDAANKGREEAVKQL-------KKLQAQMKDLQR 812
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 846 EYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRGNPAApkgkssgifpSETLEIGEVVEKDttELMEKL------ 919
Cdd:pfam01576 813 ELEEARASRDEILA----QSKESEKKLKNLEAELLQLQEDLAA----------SERARRQAQQERD--ELADEIasgasg 876
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 1039770153 920 -EVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQL 964
Cdd:pfam01576 877 kSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQL 922
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
146-826 |
7.99e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 7.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 146 VEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 225
Cdd:PTZ00121 1088 RADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAE 1167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 226 IqfqhlqanetlqnstlSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAqisfLQEKLRAfemEKDRKIENLNAKEiQE 305
Cdd:PTZ00121 1168 E----------------ARKAEDAKKAEAARKAEEVRKAEELRKAEDARK----AEAARKA---EEERKAEEARKAE-DA 1223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 306 KQAlidELNTRVVEEEKKTVELK--NKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIK-------EL 376
Cdd:PTZ00121 1224 KKA---EAVKKAEEAKKDAEEAKkaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadeakkaEE 1300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 377 MRTVEELQKRnlKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGK-QIVQMKQELINQHMSQIEELKSQHKREMENTLK 455
Cdd:PTZ00121 1301 KKKADEAKKK--AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAaEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 456 SDTNAAISKEQVNlmnaAINELNVRLQETHAQKEELKgelgvvlgEKSALQSQSndllEEVRFLREQVQKARQTI--AEQ 533
Cdd:PTZ00121 1379 KADAAKKKAEEKK----KADEAKKKAEEDKKKADELK--------KAAAAKKKA----DEAKKKAEEKKKADEAKkkAEE 1442
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 534 ENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEitnykiklemlEKEKNAVLDRMAESQEAELERLRTQllfshE 613
Cdd:PTZ00121 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE-----------EAKKADEAKKKAEEAKKKADEAKKA-----A 1506
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 614 EELSKLKEDLEVEHRINIEKLKdnlgihykqqidglQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKS 693
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAK--------------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKA 1572
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 694 EEMNlqiNELQKEIEILKQEEKEK--GTLEQEVQELQLKTEQLEKQlkEKEDDLQEKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:PTZ00121 1573 EEDK---NMALRKAEEAKKAEEARieEVMKLYEEEKKMKAEEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 772 MYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQR 826
Cdd:PTZ00121 1648 KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK 1702
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1808-2109 |
8.54e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 8.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1808 SRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGY 1887
Cdd:TIGR02169 698 RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKL 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1888 SD-----EKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLL-------------CRQREAMRAEAGP 1949
Cdd:TIGR02169 778 EEalndlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLekeiqelqeqridLKEQIKSIEKEIE 857
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1950 VEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELE---QEKNAELTDLRQQSQALEKQLEKMR 2026
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEaqiEKKRKRLSELKAKLEALEEELSEIE 937
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2027 KFLDEQAIDREHERD--VFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRcsellLSKEqlQRDIQERNE 2104
Cdd:TIGR02169 938 DPKGEDEEIPEEELSleDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK-----LEEE--RKAILERIE 1010
|
....*
gi 1039770153 2105 EIEKL 2109
Cdd:TIGR02169 1011 EYEKK 1015
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1871-2360 |
1.21e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 1.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1871 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQ-----RRVEEERQL--LCRQREAM 1943
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARkadelKKAEEKKKAdeAKKAEEKK 1302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1944 RAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQ-EKNAELTDL-----RQQSQA 2017
Cdd:PTZ00121 1303 KADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAaEEKAEAAEKkkeeaKKKADA 1382
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2018 LEKQLEKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSE------------HQAREVEQLTNHLKEKTD-- 2083
Cdd:PTZ00121 1383 AKKKAEEKKK--ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEekkkadeakkkaEEAKKADEAKKKAEEAKKae 1460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2084 ---------RCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLA--SAEPFPKVEDQKRS----GAVEADPELSLE 2148
Cdd:PTZ00121 1461 eakkkaeeaKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAkkKADEAKKAEEAKKAdeakKAEEAKKADEAK 1540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2149 VQLQVERDATDRKQKEITNLEE--QLEQFREELENKNDEVQ--ELLMQLEIQRKESTTRLQElqQENRLFKDEIEKLGFA 2224
Cdd:PTZ00121 1541 KAEEKKKADELKKAEELKKAEEkkKAEEAKKAEEDKNMALRkaEEAKKAEEARIEEVMKLYE--EEKKMKAEEAKKAEEA 1618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2225 MKESDSVSTRDQPMlfgKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDN--KVIEEQKEQIQDLETQiERLMSEREHEK 2302
Cdd:PTZ00121 1619 KIKAEELKKAEEEK---KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEeaKKAEEDKKKAEEAKKA-EEDEKKAAEAL 1694
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2303 KQREEEVEQLTGVVEKLQQEVVSTEQQR--EGARTLPEDEESFKHQLDKVTAEKLVLEQQ 2360
Cdd:PTZ00121 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKkaEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1952-2182 |
1.28e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 1.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1952 QQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQE---KNAELTDLRQQSQALEKQLEKMRKF 2028
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQElaaLEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2029 LDEQ--AIDREHERD-----VFQQEIQKLEHQLKAvprIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQE 2101
Cdd:COG4942 106 LAELlrALYRLGRQPplallLSPEDFLDAVRRLQY---LKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2102 RNEEIEKLEcRVRELEQALLAsaepfpkvedqkrsgaveadpelSLEVQLQVERDATDRKQKEITNLEEQLEQFREELEN 2181
Cdd:COG4942 183 LEEERAALE-ALKAERQKLLA-----------------------RLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
.
gi 1039770153 2182 K 2182
Cdd:COG4942 239 A 239
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
130-748 |
1.63e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 54.35 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 130 SSSEQGAQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDd 209
Cdd:pfam15921 288 SSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERD- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 210 tmveflELTEQSQKLQIQFQHLQANetlqnstLSRTATDLLQAKRQiftqqqqlqdyQKKEEDLQAQISFLQEKLRafem 289
Cdd:pfam15921 367 ------QFSQESGNLDDQLQKLLAD-------LHKREKELSLEKEQ-----------NKRLWDRDTGNSITIDHLR---- 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 290 ekdRKIENLNAkEIQEKQALIDELNTRV---VEEEKKTVELKN----KVTTADELLGGLHEQLTQRNQEIQSLKLELGNS 362
Cdd:pfam15921 419 ---RELDDRNM-EVQRLEALLKAMKSECqgqMERQMAAIQGKNesleKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS 494
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 363 QQNERKCSEEIKELMRTVEELQKrnlkdswlETSAVR-RVEQETQrKLSHLQAELDEMYGKQI------VQMKQ-----E 430
Cdd:pfam15921 495 ERTVSDLTASLQEKERAIEATNA--------EITKLRsRVDLKLQ-ELQHLKNEGDHLRNVQTecealkLQMAEkdkviE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 431 LINQHMSQIEELKSQHKRementlksdTNAAISKEQVNLmNAAINELNVRLQETHAQKEELKGELgvvlgekSALQSQSN 510
Cdd:pfam15921 566 ILRQQIENMTQLVGQHGR---------TAGAMQVEKAQL-EKEINDRRLELQEFKILKDKKDAKI-------RELEARVS 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 511 DL-LEEVRFLR---EQVQKARQTIAEQENRLSEARKSLSTVEDLKAEivaasesrkelelkHEAEITNYKIKLEMLEKEK 586
Cdd:pfam15921 629 DLeLEKVKLVNagsERLRAVKDIKQERDQLLNEVKTSRNELNSLSED--------------YEVLKRNFRNKSEEMETTT 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 587 NAvLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEklkdnlgihyKQQIDGLQNEMNRKMESMQcetdN 666
Cdd:pfam15921 695 NK-LKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAK----------RGQIDALQSKIQFLEEAMT----N 759
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 667 LITQQNQLILENSKLRDLQECLVNSKseemnlqiNELQKEIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQ 746
Cdd:pfam15921 760 ANKEKHFLKEEKNKLSQELSTVATEK--------NKMAGELEVLRSQERR---LKEKVANMEVALDKASLQFAECQDIIQ 828
|
..
gi 1039770153 747 EK 748
Cdd:pfam15921 829 RQ 830
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1804-2109 |
1.83e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1804 LNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRErlqeesrareQLAEELNKAESV 1883
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE----------QLKEELKALREA 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1884 IDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEagpvEQQFLQETEKLMK 1963
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL----IEELESELEALLN 880
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1964 EKLEVQCQAEKVRGDLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAID-------- 2035
Cdd:TIGR02168 881 ERASLEEALALLRSELEELSEELR-ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtleeaeal 959
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039770153 2036 ---REHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDrcsELLLSKEQLQRDIQERNEEIEKL 2109
Cdd:TIGR02168 960 enkIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE---DLTEAKETLEEAIEEIDREARER 1033
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
534-880 |
1.89e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 534 ENRLSEARKSLSTVEDLKAEIvaasesRKELE-LKHEAEITN--YKIKLEMLEKEKNAVLDRMaESQEAELERLRTQLlf 610
Cdd:COG1196 178 ERKLEATEENLERLEDILGEL------ERQLEpLERQAEKAEryRELKEELKELEAELLLLKL-RELEAELEELEAEL-- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 611 sheEELSKLKEDLEVEHRiNIEKLKDNLgihyKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEclvn 690
Cdd:COG1196 249 ---EELEAELEELEAELA-ELEAELEEL----RLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEE---- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 691 skseemnlQINELQKEIEILKQEekekgtLEQEVQELQLKTEQLEKQ---LKEKEDDLQEKCAQLDAENNILKEEKRVLE 767
Cdd:COG1196 317 --------RLEELEEELAELEEE------LEELEEELEELEEELEEAeeeLEEAEAELAEAEEALLEAEAELAEAEEELE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 768 DKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREY 847
Cdd:COG1196 383 ELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
330 340 350
....*....|....*....|....*....|...
gi 1039770153 848 TCLLKIRDDLEATQTKQALEYESKLRALEEELL 880
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
300-755 |
2.03e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 2.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 300 AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLT---QRNQEIQSLKLELGNSQQNERKC------- 369
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEeheERREELETLEAEIEDLRETIAETerereel 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 370 SEEIKELMRTVEELQKRNlkDSWLETSAVRRVEQET-QRKLSHLQAELDEMygkqivqmkQELINQHMSQIEELKSQHKR 448
Cdd:PRK02224 278 AEEVRDLRERLEELEEER--DDLLAEAGLDDADAEAvEARREELEDRDEEL---------RDRLEECRVAAQAHNEEAES 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 449 EMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGEL----------GVVLGEksaLQSQSNDLLEEVRF 518
Cdd:PRK02224 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIeelrerfgdaPVDLGN---AEDFLEELREERDE 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 519 LREQVQKARQTIAEQENRLSEARKSLST---------VEDlkAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAV 589
Cdd:PRK02224 424 LREREAELEATLRTARERVEEAEALLEAgkcpecgqpVEG--SPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 590 LDrmAESQEAELERLR------TQLLFSHE----------EELSKLKEDLEVE-----------------HRINIEKLKD 636
Cdd:PRK02224 502 ED--LVEAEDRIERLEerredlEELIAERRetieekreraEELRERAAELEAEaeekreaaaeaeeeaeeAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 637 NLGiHYKQQIDGLQN---------EMNRKMESMQCETDNLITQQNQ----LILENSKLRDLQECL--------------- 688
Cdd:PRK02224 580 KLA-ELKERIESLERirtllaaiaDAEDEIERLREKREALAELNDErrerLAEKRERKRELEAEFdearieearedkera 658
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039770153 689 ------VNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEkQLKEKEDDLQEKCAQLDAE 755
Cdd:PRK02224 659 eeyleqVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEALE-ALYDEAEELESMYGDLRAE 730
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
3021-3314 |
2.05e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3021 QKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKlelgttlkaqhkrlKELEAFRSEVKEKTDEIHFLSDT 3100
Cdd:TIGR02168 245 QEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ--------------KELYALANEISRLEQQKQILRER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3101 LAREQKNSLELQWALEKEKARSGHHEGRE---KEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHdA 3177
Cdd:TIGR02168 311 LANLERQLEELEAQLEELESKLDELAEELaelEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV-A 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3178 QLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDggqpppalpsedlLKELQKQLEEKHSRIVELLSET 3257
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE-------------LKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039770153 3258 EkykldslQTRQQMEKDRQvhqkTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKR 3314
Cdd:TIGR02168 457 E-------RLEEALEELRE----ELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1810-2352 |
2.18e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 53.96 E-value: 2.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1810 LQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQ----KQEATESLHCLEELRERLQEESRAREQLAEELN----KAE 1881
Cdd:pfam05483 188 LNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKiqhlEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTflleESR 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1882 SVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLlcrqreamraeAGPVEQQFLQETEKL 1961
Cdd:pfam05483 268 DKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQI-----------ATKTICQLTEEKEAQ 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1962 MKEKLEVQCQAEKVRGDLQKQVKALE---------IDVEEQVSRFIELE-QEKNAELTDLRQQSQALEKQLEKMRKFL-- 2029
Cdd:pfam05483 337 MEELNKAKAAHSFVVTEFEATTCSLEellrteqqrLEKNEDQLKIITMElQKKSSELEEMTKFKNNKEVELEELKKILae 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2030 DEQAIDREHERDVFQQEIQKLEHQLKA---------------VPRIQPVSEHQAREVEQLTNHLK-------EKTDRCSE 2087
Cdd:pfam05483 417 DEKLLDEKKQFEKIAEELKGKEQELIFllqarekeihdleiqLTAIKTSEEHYLKEVEDLKTELEkeklkniELTAHCDK 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2088 LLLSKEQLQRDIQERNEEIEKLECRV---RELEQALLASAEPFPKVEDQKRSGAVEADPELSL---EVQLQVERDATD-- 2159
Cdd:pfam05483 497 LLLENKELTQEASDMTLELKKHQEDIincKKQEERMLKQIENLEEKEMNLRDELESVREEFIQkgdEVKCKLDKSEENar 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2160 -------RKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQ-QENRLFKDEIEKLGFAMKESDSV 2231
Cdd:pfam05483 577 sieyevlKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNaYEIKVNKLELELASAKQKFEEII 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2232 STRDQPMLFGKFAQLIQEKEIEIDRLN-EQFIKLQQQLKLTTDNKvIEEQKEQIQDLETQIERLMSEREHE---KKQREE 2307
Cdd:pfam05483 657 DNYQKEIEDKKISEEKLLEEVEKAKAIaDEAVKLQKEIDKRCQHK-IAEMVALMEKHKHQYDKIIEERDSElglYKNKEQ 735
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1039770153 2308 EVEQLTGVVE----KLQQEVVSTEQQREGARtlpEDEESFKHQLDKVTA 2352
Cdd:pfam05483 736 EQSSAKAALEielsNIKAELLSLKKQLEIEK---EEKEKLKMEAKENTA 781
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1890-2362 |
2.60e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 53.82 E-value: 2.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1890 EKTLFERQIQEKTDIIEHLEQEvLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQET-EKLMKEKLEV 1968
Cdd:TIGR00618 353 QEIHIRDAHEVATSIREISCQQ-HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRdLQGQLAHAKK 431
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1969 QCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRK----FLDEQAIDR-------- 2036
Cdd:TIGR00618 432 QQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAvvlaRLLELQEEPcplcgsci 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2037 ----------------------EHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQ 2094
Cdd:TIGR00618 512 hpnparqdidnpgpltrrmqrgEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2095 LQRDIQERNEEIEKLECRVRELEQALL-------------------------------ASAEPFPKVEDQKRSGAVEADP 2143
Cdd:TIGR00618 592 ITVRLQDLTEKLSEAEDMLACEQHALLrklqpeqdlqdvrlhlqqcsqelalkltalhALQLTLTQERVREHALSIRVLP 671
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2144 ELSLEvQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGF 2223
Cdd:TIGR00618 672 KELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH 750
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2224 AMKESDSVSTRDQpmlfgkfAQLIQEKEIEIDRLNEQfiklqQQLKLTTDNKvIEEQKEQIQDLETQIERLMSEREHEKK 2303
Cdd:TIGR00618 751 QARTVLKARTEAH-------FNNNEEVTAALQTGAEL-----SHLAAEIQFF-NRLREEDTHLLKTLEAEIGQEIPSDED 817
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039770153 2304 QREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2362
Cdd:TIGR00618 818 ILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSD 876
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1822-2349 |
3.22e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 3.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1822 SETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQIQEK 1901
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1902 TDIIEHLEQEVLCMNNRLQELESDQRRVEEERQllcrqreamRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQK 1981
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK---------KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1982 QVKALEIDVEEQVSRFIElEQEKNAEL---TDLRQQSQALEKQLEKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVP 2058
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAE-EAKKAEEAkkkAEEAKKADEAKKKAEEAKK--ADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2059 RIQPVSEhqAREVEQLTNhlKEKTDRCSELLLSKEQLQRDIQERNEEIEKLEcRVRELEQALLASAEpfpKVEDQKRSGA 2138
Cdd:PTZ00121 1514 EAKKAEE--AKKADEAKK--AEEAKKADEAKKAEEKKKADELKKAEELKKAE-EKKKAEEAKKAEED---KNMALRKAEE 1585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2139 VEADPELSLEVQLQVERDATDRKQKEITNLEEqlEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRlfKDEI 2218
Cdd:PTZ00121 1586 AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE--AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE--ENKI 1661
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2219 EKLGFAMKESDSVSTRDQpmlFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSER 2298
Cdd:PTZ00121 1662 KAAEEAKKAEEDKKKAEE---AKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 2299 EHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARtlPEDEESFKHQLDK 2349
Cdd:PTZ00121 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR--KEKEAVIEEELDE 1787
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
236-879 |
3.26e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 53.64 E-value: 3.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 236 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAfEMEKDRKIENLNAKEIQEKQALID---E 312
Cdd:pfam01576 1 TRQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQA-ETELCAEAEEMRARLAARKQELEEilhE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 313 LNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnlkdsw 392
Cdd:pfam01576 80 LESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKE------ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 393 letsavRRVEQETQRKLSHLQAELDEMygkqiVQMKQELINQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNA 472
Cdd:pfam01576 154 ------RKLLEERISEFTSNLAEEEEK-----AKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQE 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 473 AINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAE---QENRLSEARKSLS-TVE 548
Cdd:pfam01576 223 QIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeraARNKAEKQRRDLGeELE 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 549 DLKAEI---VAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL-------------LFSH 612
Cdd:pfam01576 303 ALKTELedtLDTTAAQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLeqakrnkanlekaKQAL 382
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 613 EEELSKLKEDL--------EVEHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLrdl 684
Cdd:pfam01576 383 ESENAELQAELrtlqqakqDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKL--- 459
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 685 qeclvnskSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKR 764
Cdd:pfam01576 460 --------SKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKK 531
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 765 VLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQ 844
Cdd:pfam01576 532 KLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLA 611
|
650 660 670
....*....|....*....|....*....|....*...
gi 1039770153 845 REYTCLLKI---RDDLEATQTKQALEYESKLRALEEEL 879
Cdd:pfam01576 612 EEKAISARYaeeRDRAEAEAREKETRALSLARALEEAL 649
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3023-3312 |
3.34e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3023 QSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTLA 3102
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIE 754
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3103 rEQKNSLElqwALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNtqlnllLEQQKQLLNESQQKIESQKMLHDAQLSEE 3182
Cdd:TIGR02169 755 -NVKSELK---ELEARIEELEEDLHKLEEALNDLEARLSHSRIPE------IQAELSKLEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3183 QGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSRedggqpppalpsedlLKELQKQLEEKHSRIVELLSETEKYKL 3262
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK---------------KEELEEELEELEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3263 DslqtRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQE 3312
Cdd:TIGR02169 890 E----RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1800-2510 |
3.57e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 3.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1800 EELMLNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNK 1879
Cdd:pfam15921 270 EQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEK 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1880 -----------AESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLC---MNNRLQELESDQ-------RRVEEERQLLCR 1938
Cdd:pfam15921 350 qlvlanselteARTERDQFSQESGNLDDQLQKLLADLHKREKELSLekeQNKRLWDRDTGNsitidhlRRELDDRNMEVQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1939 QREA----MRAEA-GPVEQQF--LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEI------DVEEQVSRFIELEQEK- 2004
Cdd:pfam15921 430 RLEAllkaMKSECqGQMERQMaaIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAkkmtleSSERTVSDLTASLQEKe 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2005 ------NAELTDLRQQSQALEKQLEKMRKfldeqaiDREHERDVfQQEIQKLEHQLKAVPRIQPVSEHQareVEQLTNHL 2078
Cdd:pfam15921 510 raieatNAEITKLRSRVDLKLQELQHLKN-------EGDHLRNV-QTECEALKLQMAEKDKVIEILRQQ---IENMTQLV 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2079 KEKTDRCSELLLSKEQLQRDIQERNEEIEKL-------ECRVRELEQALlasaepfPKVEDQKRSGAVEADPELSLEVQL 2151
Cdd:pfam15921 579 GQHGRTAGAMQVEKAQLEKEINDRRLELQEFkilkdkkDAKIRELEARV-------SDLELEKVKLVNAGSERLRAVKDI 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2152 QVERDATDRKQK----EITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTrlqELQQENRLFKDEIEKLGFAMKe 2227
Cdd:pfam15921 652 KQERDQLLNEVKtsrnELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQS---ELEQTRNTLKSMEGSDGHAMK- 727
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2228 sdsvstrdqpmlfgkfaqliqekeieidrlneqfIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREE 2307
Cdd:pfam15921 728 ----------------------------------VAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNK 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2308 EVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVT-----AEKLVLEQQVETTNQVMTHMNNVlKEIN--- 2379
Cdd:pfam15921 774 LSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASlqfaeCQDIIQRQEQESVRLKLQHTLDV-KELQgpg 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2380 -FKMDQITQSLCNLNKECASNEELPSLPKESVHMTVHELGSDNLQPEdaPAQDVTKPLEKQTSLTRLQKSPEASRTQEiE 2458
Cdd:pfam15921 853 yTSNSSMKPRLLQPASFTRTHSNVPSSQSTASFLSHHSRKTNALKED--PTRDLKQLLQELRSVINEEPTVQLSKAED-K 929
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 1039770153 2459 SLASSVGAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQRSLEKFAAAL 2510
Cdd:pfam15921 930 GRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSSETCSREPVLL 981
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1810-2220 |
4.29e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 4.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1810 LQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATES----LHCLEELRERLQEESRAREQLAEELNKA-ESVI 1884
Cdd:TIGR04523 237 KQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkkiKELEKQLNQLKSEISDLNNQKEQDWNKElKSEL 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1885 DGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEagpvEQQFLQETEKLMKE 1964
Cdd:TIGR04523 317 KNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQ 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1965 K--LEVQCQ-AEKVRGDLQKQVKALEID---VEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrEH 2038
Cdd:TIGR04523 393 IndLESKIQnQEKLNQQKDEQIKKLQQEkelLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESL----ET 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2039 ERDVFQQEIQKLEHQLKAVPR--IQPVSEHQA--REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVR 2114
Cdd:TIGR04523 469 QLKVLSRSINKIKQNLEQKQKelKSKEKELKKlnEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELN 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2115 ELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDAtDRKQKEITNLEEQLEQFREELENKNDEVQELLMQ-- 2192
Cdd:TIGR04523 549 KDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELI-DQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEne 627
|
410 420
....*....|....*....|....*....
gi 1039770153 2193 -LEIQRKESTTRLQELQQENRLFKDEIEK 2220
Cdd:TIGR04523 628 kLSSIIKNIKSKKNKLKQEVKQIKETIKE 656
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1872-2417 |
5.13e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.74 E-value: 5.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1872 QLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRV-EEERQLLCRQREAMRAEAGPV 1950
Cdd:TIGR00606 416 DLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRIlELDQELRKAERELSKAEKNSL 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1951 EQQFLQETEKLMKEKLEV--------QCQAEKVR-GDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLR---QQSQAL 2018
Cdd:TIGR00606 496 TETLKKEVKSLQNEKADLdrklrkldQEMEQLNHhTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLgyfPNKKQL 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2019 EKQLEKMRKfldEQAIDREHERDVfQQEIQKLEHQlkavpriqpvSEHQAREVEQLTNHLKEKTDRCSElLLSKEQLQRD 2098
Cdd:TIGR00606 576 EDWLHSKSK---EINQTRDRLAKL-NKELASLEQN----------KNHINNELESKEEQLSSYEDKLFD-VCGSQDEESD 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2099 IQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREE 2178
Cdd:TIGR00606 641 LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKK 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2179 LENKNDEVQEL--LMQLEIQRKESttRLQELQQENRLFKDEIEKLGFAMKESDSvstrdqpmlfgKFAQLIQEKEIEIDR 2256
Cdd:TIGR00606 721 KEKRRDEMLGLapGRQSIIDLKEK--EIPELRNKLQKVNRDIQRLKNDIEEQET-----------LLGTIMPEEESAKVC 787
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2257 LNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLEtqIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTL 2336
Cdd:TIGR00606 788 LTDVTIMERFQMELKDVERKIAQQAAKLQGSD--LDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSK 865
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2337 PEDEESFKHQLDKVTAEKLVLEQQVETtnqVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEELPSLPKESVHMTVHE 2416
Cdd:TIGR00606 866 TNELKSEKLQIGTNLQRRQQFEEQLVE---LSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDK 942
|
.
gi 1039770153 2417 L 2417
Cdd:TIGR00606 943 V 943
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
2136-2333 |
5.35e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 51.75 E-value: 5.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2136 SGAVEADPelslevQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTT---RLQELQQENR 2212
Cdd:COG3883 9 PTPAFADP------QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKlqaEIAEAEAEIE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2213 LFKDEIEKLGFAMKESDSVSTRDQPMLFGK-FAQLIQEKEIeIDRLNEQFIKLQQQLKltTDNKVIEEQKEQIQDLETQI 2291
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSEsFSDFLDRLSA-LSKIADADADLLEELK--ADKAELEAKKAELEAKLAEL 159
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039770153 2292 ERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGA 2333
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAEL 201
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3030-3344 |
7.45e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 7.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3030 ELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIhflsDTLAREQKNSL 3109
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADEL----KKAAAAKKKAD 1421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3110 EL-QWALEKEKARSGHHEGREKEELEDLKFSLEDQKR-----------RNTQLNLLLEQQKQLLNESQQKIESQKMLHDA 3177
Cdd:PTZ00121 1422 EAkKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKaeeakkkaeeaKKADEAKKKAEEAKKADEAKKKAEEAKKKADE 1501
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3178 QLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERElyAQLQSREDGGQPPPALPSEDLLK-ELQKQLEEKHS-------- 3248
Cdd:PTZ00121 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA--DEAKKAEEKKKADELKKAEELKKaEEKKKAEEAKKaeedknma 1579
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3249 -RIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRL 3327
Cdd:PTZ00121 1580 lRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
330
....*....|....*..
gi 1039770153 3328 QGLMQEFQKQELEPEEK 3344
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKK 1676
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
136-354 |
7.99e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 7.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 136 AQSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFL 215
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEE-KALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 216 ELT----EQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEK 291
Cdd:COG4942 94 ELRaeleAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039770153 292 DRKIENLN---------AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQS 354
Cdd:COG4942 174 AELEALLAeleeeraalEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1871-2402 |
9.16e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 52.36 E-value: 9.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1871 EQLAEELNKAESVIDG--YSDEKTLFERQIQE---KTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRA 1945
Cdd:TIGR01612 1146 DEIKAQINDLEDVADKaiSNDDPEEIEKKIENivtKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGK 1225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1946 -------EAGPVEQQFLQETEKLMKEKLEVQCQAEKVRG------DLQKQVKALEIDVEEQVSRFIeLEQEKNAELTDLR 2012
Cdd:TIGR01612 1226 lflekidEEKKKSEHMIKAMEAYIEDLDEIKEKSPEIENemgiemDIKAEMETFNISHDDDKDHHI-ISKKHDENISDIR 1304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2013 QQSQAL------EKQLEKMRKFLDEQAID-REHERDVFQ--QEIQKLEHQLK--AVPRIQPVSEHQAREVEQLTNHLKEK 2081
Cdd:TIGR01612 1305 EKSLKIiedfseESDINDIKKELQKNLLDaQKHNSDINLylNEIANIYNILKlnKIKKIIDEVKEYTKEIEENNKNIKDE 1384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2082 TDRcSELLLSKEQLQRDIQERNEEIEKL-------EC--RVRELEQALLA----------SAEPFPK------------- 2129
Cdd:TIGR01612 1385 LDK-SEKLIKKIKDDINLEECKSKIESTlddkdidECikKIKELKNHILSeesnidtyfkNADENNEnvlllfkniemad 1463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2130 ------VEDQKRSGAVEADPELSlEVQLQVER-----DATDRKQKEITNLEEQLEQFREEL-----------------EN 2181
Cdd:TIGR01612 1464 nksqhiLKIKKDNATNDHDFNIN-ELKEHIDKskgckDEADKNAKAIEKNKELFEQYKKDVtellnkysalaiknkfaKT 1542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2182 KND------EVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPmLFGKFAQLIQ------- 2248
Cdd:TIGR01612 1543 KKDseiiikEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLEN-FENKFLKISDikkkind 1621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2249 --------EKEIEIDRLNEQFIKLQQQLK-----------LTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREeev 2309
Cdd:TIGR01612 1622 clketesiEKKISSFSIDSQDTELKENGDnlnslqeflesLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYE--- 1698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2310 eqlTGVVEKLQQEVVSTEQQREGARTLPEDE-ESFKHQLDKVTAEKLVLEQQVETTNqvmTHMNNVLKEINFKMDQITQS 2388
Cdd:TIGR01612 1699 ---IGIIEKIKEIAIANKEEIESIKELIEPTiENLISSFNTNDLEGIDPNEKLEEYN---TEIGDIYEEFIELYNIIAGC 1772
|
650
....*....|....
gi 1039770153 2389 LCNLNKECASNEEL 2402
Cdd:TIGR01612 1773 LETVSKEPITYDEI 1786
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
300-540 |
1.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 300 AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRT 379
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 380 VEELQKRnlkdswLETSAVRRVEQETQRKLSHL-------QAELDEMYGKQIVQMKQELINQHMSQIEELKSQhkremen 452
Cdd:COG4942 99 LEAQKEE------LAELLRALYRLGRQPPLALLlspedflDAVRRLQYLKYLAPARREQAEELRADLAELAAL------- 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 453 tlksdtNAAISKEQVNLmNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAE 532
Cdd:COG4942 166 ------RAELEAERAEL-EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*...
gi 1039770153 533 QENRLSEA 540
Cdd:COG4942 239 AAERTPAA 246
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
483-782 |
1.06e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 51.66 E-value: 1.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 483 ETHAQKEELKGELGVVLGEKSALQSQSNDLLEEV---RFLREQVQKARQTiaEQENRLSEARKSLSTVEDLKAEIVAASE 559
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMeqeRLRQEKEEKAREV--ERRRKLEEAEKARQAEMDRQAAIYAEQE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 560 sRKELELKHEAE---ITNYKIKLEMLEKEKNAV-LDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEHRINIEKLK 635
Cdd:pfam17380 341 -RMAMERERELErirQEERKRELERIRQEEIAMeISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 636 DNLGIHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEK 715
Cdd:pfam17380 420 VEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK 499
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 716 EKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILK----EEKRVLEDKLKMYSpseqEERS 782
Cdd:pfam17380 500 ELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKqqemEERRRIQEQMRKAT----EERS 566
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
2160-2506 |
1.14e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.60 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2160 RKQKEITnlEEQLEQFREELENKNDEVQELLMQLE-IQRK-ESTTRLQELQQENR-----LFKDEIEKLGFAMKESDSVS 2232
Cdd:TIGR02168 171 KERRKET--ERKLERTRENLDRLEDILNELERQLKsLERQaEKAERYKELKAELRelelaLLVLRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2233 TRDQPMLFgKFAQLIQEKEIEIDRLNEQFIKLQQqlKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQL 2312
Cdd:TIGR02168 249 KEAEEELE-ELTAELQELEEKLEELRLEVSELEE--EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2313 TGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNvlkeinfKMDQITQSLCNL 2392
Cdd:TIGR02168 326 EELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS-------KVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2393 NKECASNEELPSLPKESVHMTVHELGSDNLQPEDAPAQDVTKPL-EKQTSLTRLQKSPEASRTQEIeslassvgakdvEL 2471
Cdd:TIGR02168 399 NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELeELEEELEELQEELERLEEALE------------EL 466
|
330 340 350
....*....|....*....|....*....|....*
gi 1039770153 2472 TQCREQTETIQEQAQSETDRLQKKLTDLQRSLEKF 2506
Cdd:TIGR02168 467 REELEEAEQALDAAERELAQLQARLDSLERLQENL 501
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
302-963 |
1.23e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 51.59 E-value: 1.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 302 EIQEKQALIDELNTRVveeeKKTVELK----NKVTTADELLG----GLHEQLTQRNQEIQSLKLELgnSQQNERKCSEEI 373
Cdd:TIGR01612 604 ELKEKIKNISDKNEYI----KKAIDLKkiieNNNAYIDELAKispyQVPEHLKNKDKIYSTIKSEL--SKIYEDDIDALY 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 374 KELMRTVEElqkrnlkdswletSAVRRVEQETqrKLSHLQAELDEMYGKqIVQMKQELINQHMSQIEELKSQhkrement 453
Cdd:TIGR01612 678 NELSSIVKE-------------NAIDNTEDKA--KLDDLKSKIDKEYDK-IQNMETATVELHLSNIENKKNE-------- 733
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 454 lKSDTNAAISKEQVNLMNaaiNELNVRLQETHAQKEEL----------KGELGVVLGEKSALQSQSNDLL-------EEV 516
Cdd:TIGR01612 734 -LLDIIVEIKKHIHGEIN---KDLNKILEDFKNKEKELsnkindyakeKDELNKYKSKISEIKNHYNDQInidnikdEDA 809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 517 RFLREQVQKARQTIAEQENrlsEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKL-EMLEKEKNAVLDRMAE 595
Cdd:TIGR01612 810 KQNYDKSKEYIKTISIKED---EIFKIINEMKFMKDDFLNKVDKFINFENNCKEKIDSEHEQFaELTNKIKAEISDDKLN 886
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 596 SQEAEL---ERLRTQLLFSHEEELSKLKEDLEVEHRINI-EKLKDNL-GIHYKQQIdgLQNEMNRKMESMQceTDNLITQ 670
Cdd:TIGR01612 887 DYEKKFndsKSLINEINKSIEEEYQNINTLKKVDEYIKIcENTKESIeKFHNKQNI--LKEILNKNIDTIK--ESNLIEK 962
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 671 QNQLILENS---KLRDLQECLVNSKSEEMNLQINELQKEIEILKQ--------------EEKEKGT--LEQEVQELQLKT 731
Cdd:TIGR01612 963 SYKDKFDNTlidKINELDKAFKDASLNDYEAKNNELIKYFNDLKAnlgknkenmlyhqfDEKEKATndIEQKIEDANKNI 1042
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 732 EQLEKQLKEKEDDLQEKCAQLDAEN------NILKEEK------RVLEDKLKMYSPSEqeersiavdpsTSKSADSRWQK 799
Cdd:TIGR01612 1043 PNIEIAIHTSIYNIIDEIEKEIGKNiellnkEILEEAEinitnfNEIKEKLKHYNFDD-----------FGKEENIKYAD 1111
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 800 EVAMLRKETEDLQQQclylneeIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEyesklraleeel 879
Cdd:TIGR01612 1112 EINKIKDDIKNLDQK-------IDHHIKALEEIKKKSENYIDEIKAQINDLEDVADKAISNDDPEEIE------------ 1172
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 880 lSKRGNPAAPKGKSSGIFPSETLEIGEV--VEKDTTElmekLEVTKREKLELSEKVSGL-----SEQLKQTHCTINSLSA 952
Cdd:TIGR01612 1173 -KKIENIVTKIDKKKNIYDEIKKLLNEIaeIEKDKTS----LEEVKGINLSYGKNLGKLflekiDEEKKKSEHMIKAMEA 1247
|
730
....*....|.
gi 1039770153 953 EVRALKQEKEQ 963
Cdd:TIGR01612 1248 YIEDLDEIKEK 1258
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
2946-3344 |
1.47e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 1.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2946 STRDVDGLLNSLEQRIQEQGIEYHTAMDCLQKADR-----RSLLAEIEDLRAQINGGKMTLEREQGTEKSSQELLdcSMQ 3020
Cdd:PRK03918 187 RTENIEELIKEKEKELEEVLREINEISSELPELREeleklEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI--REL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3021 QKQSLEMQLELSSLRDRAAELQEQLSSEKMVVA------ELKSELAQAKLELGT---TLKAQHKRLKELEAFRSEVKEKT 3091
Cdd:PRK03918 265 EERIEELKKEIEELEEKVKELKELKEKAEEYIKlsefyeEYLDELREIEKRLSRleeEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3092 DEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQ 3171
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3172 KM-------------LHDAQLSEEQGRNLGLQALLESEQVRiQEMKSTLDKERELYAQLQSREDGGQPPPALPSEDLLKE 3238
Cdd:PRK03918 425 KKaieelkkakgkcpVCGRELTEEHRKELLEEYTAELKRIE-KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3239 LQKQLEEKHSRIV--ELLSETEKY-----KLDSLQTRQQMEKDRQVHQKTLQTEQEANtqgQKKMQELQSKVEELQRQLQ 3311
Cdd:PRK03918 504 QLKELEEKLKKYNleELEKKAEEYeklkeKLIKLKGEIKSLKKELEKLEELKKKLAEL---EKKLDELEEELAELLKELE 580
|
410 420 430
....*....|....*....|....*....|....*....
gi 1039770153 3312 EKR-QQVYKLDLEGKRLQGLMQEF-----QKQELEPEEK 3344
Cdd:PRK03918 581 ELGfESVEELEERLKELEPFYNEYlelkdAEKELEREEK 619
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
464-660 |
1.62e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 464 KEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSqsndlLEEVRFLREQVQKARQTIAEQENRLSEARKS 543
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR-----LAEYSWDEIDVASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 544 LSTVEDLKAEIVAASESRKELelkhEAEITNYKIKLEMLEKEknavLDRMAESQEAELERLRTQLLFSHEEELSKLKEDL 623
Cdd:COG4913 684 SDDLAALEEQLEELEAELEEL----EEELDELKGEIGRLEKE----LEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
170 180 190
....*....|....*....|....*....|....*..
gi 1039770153 624 EvehRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESM 660
Cdd:COG4913 756 A---AALGDAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1881-2528 |
1.70e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 51.27 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1881 ESVIDGYSDEKTLFERQIQEKTDIIE----HLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFlq 1956
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEkqkfYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHEL-- 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1957 ETEKLMKEKL--EVQCQAEKVR-------GDLQkQVKALEIDVEEQVSRfiELEQEKNAELTDLRQQSQALEKQLEKMR- 2026
Cdd:pfam15921 155 EAAKCLKEDMleDSNTQIEQLRkmmlsheGVLQ-EIRSILVDFEEASGK--KIYEHDSMSTMHFRSLGSAISKILRELDt 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2027 --KFLDEQAIDREHERDVFQQEIQ-KLEHQLKA-VPRI-QPVSEHQArEVEQLTNHLKEKTDRCSELLLSKEQLQRDIQE 2101
Cdd:pfam15921 232 eiSYLKGRIFPVEDQLEALKSESQnKIELLLQQhQDRIeQLISEHEV-EITGLTEKASSARSQANSIQSQLEIIQEQARN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2102 RNE----EIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADPELSlevQLQVERDatdrkqkeitnleeqleQFRE 2177
Cdd:pfam15921 311 QNSmymrQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELT---EARTERD-----------------QFSQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2178 ELENKNDEVQELLMQLEIQRKESTTrlqELQQENRLFKDE------IEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEKE 2251
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSL---EKEQNKRLWDRDtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2252 IEIDRLN------EQFIKLQQQLKLTTD--NKVIEEQKEQIQDLETQiERLMSEREHEKKQREEEVEQLTGVVEKLQ--- 2320
Cdd:pfam15921 448 RQMAAIQgkneslEKVSSLTAQLESTKEmlRKVVEELTAKKMTLESS-ERTVSDLTASLQEKERAIEATNAEITKLRsrv 526
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2321 ----QEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQ-----------VMTHMNNVLKEINFKMDQI 2385
Cdd:pfam15921 527 dlklQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQlvgqhgrtagaMQVEKAQLEKEINDRRLEL 606
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2386 TQSLCNLNKECASNEELPS----LPKESVHMTvhELGSDNLQpedaPAQDVTKPLEKQTSLTRLQKSPEASRTQEIESLA 2461
Cdd:pfam15921 607 QEFKILKDKKDAKIRELEArvsdLELEKVKLV--NAGSERLR----AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK 680
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 2462 SSVGAKDVELTQCREQTETIQEQAQSETDRLQKKLTDLQRS---LEKFAAALVSQV-----QMEAAQEYVPFHQE 2528
Cdd:pfam15921 681 RNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghAMKVAMGMQKQItakrgQIDALQSKIQFLEE 755
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1978-2334 |
1.70e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.92 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1978 DLQKQVKALEiDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDRE-----HERDVFQQEIQKLEH 2052
Cdd:COG4717 75 ELEEELKEAE-EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQElealeAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2053 QLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCS--------ELLLSKEQLQRDIQERNEEIEKLECRVRELEQAL---- 2120
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELLEQLSlateeelqDLAEELEELQQRLAELEEELEEAQEELEELEEELeqle 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2121 --LASAEPFPKVEDQKRSGAVEA--------------------------------------DPELSLEVQLQVERDATDR 2160
Cdd:COG4717 234 neLEAAALEERLKEARLLLLIAAallallglggsllsliltiagvlflvlgllallflllaREKASLGKEAEELQALPAL 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2161 KQKEITNLEEQLEQFREELENKNDEVQELLMQLEiQRKESTTRLQELQQENRLfkDEIEKLGFAMKESDSVSTRDQpmlf 2240
Cdd:COG4717 314 EELEEEELEELLAALGLPPDLSPEELLELLDRIE-ELQELLREAEELEEELQL--EELEQEIAALLAEAGVEDEEE---- 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2241 gkFAQLIQEKEiEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQ 2320
Cdd:COG4717 387 --LRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELE 463
|
410
....*....|....*....
gi 1039770153 2321 Q-----EVVSTEQQREGAR 2334
Cdd:COG4717 464 QleedgELAELLQELEELK 482
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
486-814 |
2.34e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 2.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 486 AQKEELKGELGVV---LGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRlsEARKSLSTVEDLKAEIVAASESRK 562
Cdd:TIGR02169 170 RKKEKALEELEEVeenIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREY--EGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 563 ELElkheAEITNYKIKLEMLEKEKNAVldrmaesqEAELERLRTQLLFSHEEELSKLKEDLEvEHRINIEKLKDNLGIhY 642
Cdd:TIGR02169 248 SLE----EELEKLTEEISELEKRLEEI--------EQLLEELNKKIKDLGEEEQLRVKEKIG-ELEAEIASLERSIAE-K 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 643 KQQIDGLQNEMnRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKE-------IEILKQEEK 715
Cdd:TIGR02169 314 ERELEDAEERL-AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVdkefaetRDELKDYRE 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 716 EKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADS 795
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELY 472
|
330
....*....|....*....
gi 1039770153 796 RWQKEVAMLRKETEDLQQQ 814
Cdd:TIGR02169 473 DLKEEYDRVEKELSKLQRE 491
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
489-641 |
2.46e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.24 E-value: 2.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 489 EELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKAR-------QTIAEQENRLsearkslstvEDLKAEIVAASESR 561
Cdd:COG2433 388 KELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEaeveeleAELEEKDERI----------ERLERELSEARSEE 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 562 KElELKHEAEITNYKIKLEMLEKEKNAvLDRMAESQEAELERLRTQLLFSHEEELSKLK--EDLEVEHrinIEKLKDNLG 639
Cdd:COG2433 458 RR-EIRKDREISRLDREIERLERELEE-ERERIEELKRKLERLKELWKLEHSGELVPVKvvEKFTKEA---IRRLEEEYG 532
|
..
gi 1039770153 640 IH 641
Cdd:COG2433 533 LK 534
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
699-878 |
3.08e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 3.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 699 QINELQKEIE----ILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDL---QEKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:COG4942 28 ELEQLQQEIAelekELAALKKEEKALLKQLAALERRIAALARRIRALEQELaalEAELAELEKEIAELRAELEAQKEELA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 772 -----MYSPSEQEERSIAVDPSTSKSADSRW----------QKEVAMLRKETEDLQQqclyLNEEIEKQRNTFAFAEKNF 836
Cdd:COG4942 108 ellraLYRLGRQPPLALLLSPEDFLDAVRRLqylkylaparREQAEELRADLAELAA----LRAELEAERAELEALLAEL 183
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039770153 837 EVNYQELQREytclLKIRDDLEATQTKQALEYESKLRALEEE 878
Cdd:COG4942 184 EEERAALEAL----KAERQKLLARLEKELAELAAELAELQQE 221
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
3020-3344 |
3.51e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3020 QQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLkaqhKRLKELEAFRSEVKEKTDEIhflsd 3099
Cdd:pfam01576 199 EEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAAL----ARLEEETAQKNNALKKIREL----- 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3100 tlareQKNSLELQWALEKEKARSGHHEGREK---EELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHD 3176
Cdd:pfam01576 270 -----EAQISELQEDLESERAARNKAEKQRRdlgEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEETRSHE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3177 AQLSE-EQGRNLGLQALLES-EQVR-----IQEMKSTLDKER-ELYAQLQSREDGGQpppalPSEDLLKELQKQLEEKHS 3248
Cdd:pfam01576 345 AQLQEmRQKHTQALEELTEQlEQAKrnkanLEKAKQALESENaELQAELRTLQQAKQ-----DSEHKRKKLEGQLQELQA 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3249 RivelLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGKRLQ 3328
Cdd:pfam01576 420 R----LSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLE 495
|
330
....*....|....*.
gi 1039770153 3329 GLMQEFQKQELEPEEK 3344
Cdd:pfam01576 496 DERNSLQEQLEEEEEA 511
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1871-2395 |
3.60e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1871 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESD----QRRVEEER---QLLCRQREAM 1943
Cdd:pfam01576 22 QKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEIlhelESRLEEEEersQQLQNEKKKM 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1944 RAEAGPVEQQFLQET---EKLMKEKLEVQCQAEKVRGD----------LQKQVKALEIDVEEQVSRFIElEQEKNAELTD 2010
Cdd:pfam01576 102 QQHIQDLEEQLDEEEaarQKLQLEKVTTEAKIKKLEEDillledqnskLSKERKLLEERISEFTSNLAE-EEEKAKSLSK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2011 LRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQlkavpriqpVSEHQAReVEQLTNHLKEKTDRCSELLL 2090
Cdd:pfam01576 181 LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQ---------IAELQAQ-IAELRAQLAKKEEELQAALA 250
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2091 SKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpelSLEVQLQVERDATDRKQKEITNLEE 2170
Cdd:pfam01576 251 RLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELE---ALKTELEDTLDTTAAQQELRSKREQ 327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2171 QLEQFREELEnknDEVQELLMQLEIQRKESTTRLQELQQE---NRLFKDEIEKLGFAMKESDSVSTRDQPMLfgkfAQLI 2247
Cdd:pfam01576 328 EVTELKKALE---EETRSHEAQLQEMRQKHTQALEELTEQleqAKRNKANLEKAKQALESENAELQAELRTL----QQAK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2248 QEKEIEIDRLNEQFIKLqqQLKLTTDNKVIEEQKEQIQDLETQIER---LMSEREHEKKQREEEV----EQLTGVVEKLQ 2320
Cdd:pfam01576 401 QDSEHKRKKLEGQLQEL--QARLSESERQRAELAEKLSKLQSELESvssLLNEAEGKNIKLSKDVssleSQLQDTQELLQ 478
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 2321 QEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKE 2395
Cdd:pfam01576 479 EETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE 553
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
515-774 |
3.65e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.93 E-value: 3.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 515 EVRFLREQVQKARqtIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEItnykikLEMLEKEKNAVLDRMa 594
Cdd:PRK05771 32 HIEDLKEELSNER--LRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEEL------IKDVEEELEKIEKEI- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 595 ESQEAELERLRTQLlfsheEELSKLKEDLEVEHRINIEkLKDNLGIHYKQQIDGLQNEmnRKMESMQCETDNLitqqNQL 674
Cdd:PRK05771 103 KELEEEISELENEI-----KELEQEIERLEPWGNFDLD-LSLLLGFKYVSVFVGTVPE--DKLEELKLESDVE----NVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 675 ILENSKLRDLqeCLVNSKSEEMNLQINELqKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDA 754
Cdd:PRK05771 171 YISTDKGYVY--VVVVVLKELSDEVEEEL-KKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
250 260
....*....|....*....|
gi 1039770153 755 ENNILKEEKRVLEDKLKMYS 774
Cdd:PRK05771 248 ELLALYEYLEIELERAEALS 267
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
556-755 |
4.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 556 AASESRKELElKHEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLrTQLLFSHEEELSKLKEDLEvEHRINIEKLK 635
Cdd:COG4942 21 AAAEAEAELE-QLQQEIAELEKELAALKKEEKALLKQLAA-LERRIAAL-ARRIRALEQELAALEAELA-ELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 636 DNLGIH---YKQQIDGLQ-----------------NEMNRKMESMQCETDNLITQQNQLILENSKLRDLQEcLVNSKSEE 695
Cdd:COG4942 97 AELEAQkeeLAELLRALYrlgrqpplalllspedfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA-ELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 696 MNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAE 755
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1991-2221 |
4.37e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 4.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1991 EEQVSRFIELEQEKNAE-LTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKL-EHQLKAVPRIQPVSEHQA 2068
Cdd:PRK05771 27 ELGVVHIEDLKEELSNErLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELiKDVEEELEKIEKEIKELE 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2069 REVEQLTNHLKEKTDRCSEL------------LLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEP-------FPK 2129
Cdd:PRK05771 107 EEISELENEIKELEQEIERLepwgnfdldlslLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKgyvyvvvVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2130 VEDQKRSGAVEADPELSlEVQLQVERDATDR---KQKEITNLEEQLEQFREELENKNDEVQELLMQ----LEIQRKESTT 2202
Cdd:PRK05771 187 KELSDEVEEELKKLGFE-RLELEEEGTPSELireIKEELEEIEKERESLLEELKELAKKYLEELLAlyeyLEIELERAEA 265
|
250 260
....*....|....*....|....*.
gi 1039770153 2203 RLQELqQENRLF-------KDEIEKL 2221
Cdd:PRK05771 266 LSKFL-KTDKTFaiegwvpEDRVKKL 290
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
502-740 |
4.57e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 4.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 502 KSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVeDLKAEIVAASESRKELelkhEAEITNYKIKLEM 581
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV-DLSEEAKLLLQQLSEL----ESQLAEARAELAE 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 582 LEKEKNAVLDRMAESQEAELERLRTQLLFSHEEELSKLKEDLEVEhrinIEKLKDNlgiH-----YKQQIDGLQNEMNRK 656
Cdd:COG3206 238 AEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAEL----SARYTPN---HpdviaLRAQIAALRAQLQQE 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 657 MESMqcetdnLITQQNQLILENSKLRDLQEclvnskseemnlQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEK 736
Cdd:COG3206 311 AQRI------LASLEAELEALQAREASLQA------------QLAQLEARLAELPELEAELRRLEREVEVARELYESLLQ 372
|
....
gi 1039770153 737 QLKE 740
Cdd:COG3206 373 RLEE 376
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1976-2220 |
4.63e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 49.52 E-value: 4.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1976 RGDLQKQVKALEIDvEEQVSRFIELEQEKNAELTDLRQQSQALEKQ---LEKMRKFLDEQAIDREHERDVFQQEIQKLEH 2052
Cdd:PLN02939 99 RASMQRDEAIAAID-NEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNillLNQARLQALEDLEKILTEKEALQGKINILEM 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2053 QL-KAVPRIQPVSEHQAR------EVEQLTNHLKEK--TDRCSELLLSKE---------QLQRDIQERNEEI-------- 2106
Cdd:PLN02939 178 RLsETDARIKLAAQEKIHveileeQLEKLRNELLIRgaTEGLCVHSLSKEldvlkeenmLLKDDIQFLKAELievaetee 257
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2107 -----EK----LECRVRELEQALLASAEPFPKVEDQKrsgaVEADPELSLEVQLQVERdATDRKQKEITNLEEQleqfrE 2177
Cdd:PLN02939 258 rvfklEKerslLDASLRELESKFIVAQEDVSKLSPLQ----YDCWWEKVENLQDLLDR-ATNQVEKAALVLDQN-----Q 327
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1039770153 2178 ELENKNDEVQELLMQLEIQrKESTTRLQELQQENRLFKDEIEK 2220
Cdd:PLN02939 328 DLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLEERLQA 369
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
241-880 |
4.70e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 241 TLSRTATDLLQAKRQIfTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKienlnakEIQEKQALIDELNTRVVEE 320
Cdd:COG4913 236 DLERAHEALEDAREQI-ELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR-------RLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 321 EKKTVELKNKVTTADELLGGLHEQLTQR-NQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVR 399
Cdd:COG4913 308 EAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALG--------LPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 400 RVEQETQRKLSHLQAELDEMYGKQivqmkQELINQHMSQIEELKSQH---KREMENTLKSDTNaaISKEQVNLMNAAINE 476
Cdd:COG4913 380 EEFAALRAEAAALLEALEEELEAL-----EEALAEAEAALRDLRRELrelEAEIASLERRKSN--IPARLLALRDALAEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 477 LNVRlqethaqKEELK--GELGVVLGEKS--------ALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLST 546
Cdd:COG4913 453 LGLD-------EAELPfvGELIEVRPEEErwrgaierVLGGFALTLLVPPEHYAAALRWVNRLHLRGRLVYERVRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 547 VEDLKAEivAASESRKeLELKhEAEITNYkiklemLEKEKNAVLDRM-AESQEaELERLRTQL----LFSHEEEL-SKLK 620
Cdd:COG4913 526 PERPRLD--PDSLAGK-LDFK-PHPFRAW------LEAELGRRFDYVcVDSPE-ELRRHPRAItragQVKGNGTRhEKDD 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 621 EDLEVEHRI----NIEKLKdnlgiHYKQQIDGLQNEMNrkmesmqcETDNLITQQNQLILENSKLRDLQECLVNSKSEEM 696
Cdd:COG4913 595 RRRIRSRYVlgfdNRAKLA-----ALEAELAELEEELA--------EAEERLEALEAELDALQERREALQRLAEYSWDEI 661
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 697 NL-----QINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLkekeDDLQEKCAQLDAENNILKEEKRVLEDKLk 771
Cdd:COG4913 662 DVasaerEIAELEAELERLDASSDDLAALEEQLEELEAELEELEEEL----DELKGEIGRLEKELEQAEEELDELQDRL- 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 772 myspseqEERSIAVDPSTSKSADSRWQKevAMLRKETEDLQQQclyLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLL 851
Cdd:COG4913 737 -------EAAEDLARLELRALLEERFAA--ALGDAVERELREN---LEERIDALRARLNRAEEELERAMRAFNREWPAET 804
|
650 660 670
....*....|....*....|....*....|
gi 1039770153 852 K-IRDDLEATQtkqalEYESKLRALEEELL 880
Cdd:COG4913 805 AdLDADLESLP-----EYLALLDRLEEDGL 829
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
643-768 |
4.82e-05 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 48.48 E-value: 4.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 643 KQQIDGLQNEMNRKMESMQCETDNLITQQNQLileNSKLRDLQECLVNSKSEEMNLQinELQKEIEILKQEE----KEK- 717
Cdd:smart00787 139 MKLLEGLKEGLDENLEGLKEDYKLLMKELELL---NSIKPKLRDRKDALEEELRQLK--QLEDELEDCDPTEldraKEKl 213
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 718 GTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLED 768
Cdd:smart00787 214 KKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQ 264
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
147-554 |
4.93e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 4.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 147 EKELAEKQHDIEELTQELEEMRASFGT--------EGLKQLQEFEAAIKQRDGIITQLTANLQQARREKD---DTMVEFL 215
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEElreeleklEKLLQLLPLYQELEALEAELAELPERLEELEERLEelrELEEELE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 216 ELTEQSQKLQIQFQHLQANETLQN-STLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRK 294
Cdd:COG4717 167 ELEAELAELQEELEELLEQLSLATeEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 295 ienlNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIK 374
Cdd:COG4717 247 ----EARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 375 ELMRTV---EELQKRNLKDSWLETSAVRRV-----EQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMsQIEELKSqh 446
Cdd:COG4717 323 ELLAALglpPDLSPEELLELLDRIEELQELlreaeELEEELQLEELEQEIAALLAEAGVEDEEELRAALE-QAEEYQE-- 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 447 KREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRF--LREQVQ 524
Cdd:COG4717 400 LKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaeLLQELE 479
|
410 420 430
....*....|....*....|....*....|
gi 1039770153 525 KARQTIAEQENRLSEARKSLSTVEDLKAEI 554
Cdd:COG4717 480 ELKAELRELAEEWAALKLALELLEEAREEY 509
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2092-2354 |
5.71e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 5.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2092 KEQLQRDIQERNEEIEKLECRVRELEQAL------LASAEPFPKVEDQKR--SGAVEADPELSLEVQLQverdatdRKQK 2163
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLerlrreREKAERYQALLKEKReyEGYELLKEKEALERQKE-------AIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2164 EITNLEEQLEQFREELENKNDEVQEllmqLEIQRKESTTRLQEL-QQENRLFKDEIEKLgfamkESDSVSTRDQpmlfgk 2242
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEE----IEQLLEELNKKIKDLgEEEQLRVKEKIGEL-----EAEIASLERS------ 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2243 faqlIQEKEIEIDRLNEQFIKLQQQlklttdnkvIEEQKEQIQDLETQIERLMSEREhekkQREEEVEQLTGVVEKLQQE 2322
Cdd:TIGR02169 310 ----IAEKERELEDAEERLAKLEAE---------IDKLLAEIEELEREIEEERKRRD----KLTEEYAELKEELEDLRAE 372
|
250 260 270
....*....|....*....|....*....|..
gi 1039770153 2323 VvstEQQREGARTLPEDEESFKHQLDKVTAEK 2354
Cdd:TIGR02169 373 L---EEVDKEFAETRDELKDYREKLEKLKREI 401
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
553-885 |
5.96e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 49.20 E-value: 5.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 553 EIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQ----EAELERLRTQLLFSHEEELSKLKEDLEVE-- 626
Cdd:pfam02463 145 EIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIidleELKLQELKLKEQAKKALEYYQLKEKLELEee 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 627 ---------HRINIEKLKDNLGIHYKQQIDGLQNEMNRKMESMQcETDNLITQQNQLILENSKLRDLQECLVNSKSEEMN 697
Cdd:pfam02463 225 yllyldylkLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA-QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 698 LQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQ------EKCAQLDAENNILKEEKRVLEDKLK 771
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREaeeeeeEELEKLQEKLEQLEEELLAKKKLES 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 772 MYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREyTCLL 851
Cdd:pfam02463 384 ERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQEL-KLLK 462
|
330 340 350
....*....|....*....|....*....|....
gi 1039770153 852 KIRDDLEATQTKQALEYESKLRALEEELLSKRGN 885
Cdd:pfam02463 463 DELELKKSEDLLKETQLVKLQEQLELLLSRQKLE 496
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1804-2331 |
6.62e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 6.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1804 LNISSRLQAAVEKLLEAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESV 1883
Cdd:TIGR00618 402 LDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQI 481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1884 IDGYSDEKTLFERqiqektdiiehleqevlcmnnRLQELESDQRRVEEerQLLCRQREAMRAEAGPVEQQFLQETEKLMK 1963
Cdd:TIGR00618 482 HLQETRKKAVVLA---------------------RLLELQEEPCPLCG--SCIHPNPARQDIDNPGPLTRRMQRGEQTYA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1964 EKLEVQcqaEKVRGDLQKQVKALEIDVEEqvsrfielEQEKNAELTDLRQQSQALEKQLEKMRKFLDeqaidreherdvf 2043
Cdd:TIGR00618 539 QLETSE---EDVYHQLTSERKQRASLKEQ--------MQEIQQSFSILTQCDNRSKEDIPNLQNITV------------- 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2044 qqeiqklehqlkavpRIQPVSEHQAREVEQLTNHLKEktdrcselLLSKEQLQRDIQERNEEIEKLECRVRELEQALLAS 2123
Cdd:TIGR00618 595 ---------------RLQDLTEKLSEAEDMLACEQHA--------LLRKLQPEQDLQDVRLHLQQCSQELALKLTALHAL 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2124 AEPFPKVEDQKRSGAVEADPELSLEvQLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTR 2203
Cdd:TIGR00618 652 QLTLTQERVREHALSIRVLPKELLA-SRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSL 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2204 LQELQQENRLFKDEIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQ------EKEIEIDRLNEQFIKLQQQLKlTTDNKVI 2277
Cdd:TIGR00618 731 GSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQtgaelsHLAAEIQFFNRLREEDTHLLK-TLEAEIG 809
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 2278 EEQKEQIQDLETQIERLMSEREhEKKQREEEVEQLTGVVEKLQQEVVSTEQQRE 2331
Cdd:TIGR00618 810 QEIPSDEDILNLQCETLVQEEE-QFLSRLEEKSATLGEITHQLLKYEECSKQLA 862
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1811-2221 |
6.74e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 6.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1811 QAAVEKLLEAISETNTQLEHAKVTQTELmRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDE 1890
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEEL-REELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEEL 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1891 KTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQC 1970
Cdd:COG4717 166 EELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERL 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1971 QAEKVRGDLQKQVKALEIDVEEQVSRFIELeqeknAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQ-EIQK 2049
Cdd:COG4717 246 KEARLLLLIAAALLALLGLGGSLLSLILTI-----AGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEElEEEE 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2050 LEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELllskeQLQRDIQERNEEIEKLecrvreLEQALLASAEPFPK 2129
Cdd:COG4717 321 LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL-----EEELQLEELEQEIAAL------LAEAGVEDEEELRA 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2130 VEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEIT--NLEEQLEQFREELENKNDEVQELLMQL-----EIQRKESTT 2202
Cdd:COG4717 390 ALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeELEEELEELEEELEELEEELEELREELaeleaELEQLEEDG 469
|
410
....*....|....*....
gi 1039770153 2203 RLQELQQENRLFKDEIEKL 2221
Cdd:COG4717 470 ELAELLQELEELKAELREL 488
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
598-884 |
7.06e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 7.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 598 EAELERLRTQLlfSHEEELSKLKEDLEvehriniEKLKDNLGIHYKQQIDGLQ------NEMNRKMESMQCETDNLITQQ 671
Cdd:TIGR02168 199 ERQLKSLERQA--EKAERYKELKAELR-------ELELALLVLRLEELREELEelqeelKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 672 NQLILENSKLRDLQEcLVNSKSEEMNLQINELQKEIEILKQE----EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 747
Cdd:TIGR02168 270 EELRLEVSELEEEIE-ELQKELYALANEISRLEQQKQILRERlanlERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 748 KCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRN 827
Cdd:TIGR02168 349 LKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 828 TFAFAEKN-FEVNYQELQREYTCLLKIRDDLEA---TQTKQALEYESKLRALEEELLSKRG 884
Cdd:TIGR02168 429 KLEEAELKeLQAELEELEEELEELQEELERLEEaleELREELEEAEQALDAAERELAQLQA 489
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1871-2190 |
7.09e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.07 E-value: 7.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1871 EQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPV 1950
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1951 EQQFLQETEKLMKE-KLEVQCQAEKVRGDL-----QKQVKALEIdVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEK 2024
Cdd:pfam12128 680 ANERLNSLEAQLKQlDKKHQAWLEEQKEQKreartEKQAYWQVV-EGALDAQLALLKAAIAARRSGAKAELKALETWYKR 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2025 MRKFL--DEQAI-DREHERDVFQQEIQKLEHQLKAV---------------PRIQPVSEHQAREVEQLTNHLKEKTDRcS 2086
Cdd:pfam12128 759 DLASLgvDPDVIaKLKREIRTLERKIERIAVRRQEVlryfdwyqetwlqrrPRLATQLSNIERAISELQQQLARLIAD-T 837
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2087 ELLLSKEQLQRDIQER-----NEEIEKLECRVREL---------EQALLASAEPFPKVEDQKRSGAveadpELSLEVQLQ 2152
Cdd:pfam12128 838 KLRRAKLEMERKASEKqqvrlSENLRGLRCEMSKLatlkedansEQAQGSIGERLAQLEDLKLKRD-----YLSESVKKY 912
|
330 340 350
....*....|....*....|....*....|....*...
gi 1039770153 2153 VERDATDRKQKEITNLEEQLEQFREELENKNDEVQELL 2190
Cdd:pfam12128 913 VEHFKNVIADHSGSGLAETWESLREEDHYQNDKGIRLL 950
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1978-2210 |
7.47e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 7.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1978 DLQKQVKALE------IDVEEQVSRFIELEqEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDReherdvFQQEIQKLE 2051
Cdd:COG4913 229 ALVEHFDDLErahealEDAREQIELLEPIR-ELAERYAAARERLAELEYLRAALRLWFAQRRLEL------LEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2052 HQLKAVpriqpvsEHQAREVEQLTNHLKEKTDRCSELLLS-----KEQLQRDIQERNEEIEKLECRVRELEQALLAsaep 2126
Cdd:COG4913 302 AELARL-------EAELERLEARLDALREELDELEAQIRGnggdrLEQLEREIERLERELEERERRRARLEALLAA---- 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2127 fpkvedqkrsgaveadpelsleVQLQVERDAtdrkqKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQE 2206
Cdd:COG4913 371 ----------------------LGLPLPASA-----EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRE 423
|
....
gi 1039770153 2207 LQQE 2210
Cdd:COG4913 424 LEAE 427
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
514-1080 |
7.49e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 7.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 514 EEVRFLRE--QVQKARQtiAEQENRLSEARKSlstVEDLKAEIVA-ASESRKELELKHEAEITNYKIKLEMLEKEKNAVL 590
Cdd:PTZ00121 1191 EELRKAEDarKAEAARK--AEEERKAEEARKA---EDAKKAEAVKkAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHF 1265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 591 DRMAESQEAELERLRTQLlfSHEEELSKLKEDLEVEHRINIEKLKDNLGIHYK-QQIDGLQNEMNRKMESMQCETDNLIT 669
Cdd:PTZ00121 1266 ARRQAAIKAEEARKADEL--KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKK 1343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 670 QQNQLILENSKLRDLQEClVNSKSEEMNLQINELQKEIEILKQ--EEKEKG-TLEQEVQELQLKTEQLEK--QLKEKEDD 744
Cdd:PTZ00121 1344 AAEAAKAEAEAAADEAEA-AEEKAEAAEKKKEEAKKKADAAKKkaEEKKKAdEAKKKAEEDKKKADELKKaaAAKKKADE 1422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 745 LQEKCAQLDAENNILK---------EEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEvamLRKETEDLQQQC 815
Cdd:PTZ00121 1423 AKKKAEEKKKADEAKKkaeeakkadEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE---AKKKAEEAKKKA 1499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 816 --LYLNEEIEKQRNTFAFAE---KNFEVNYQELQREYTCLLKIRDDLEATQTKQALEY---------ESKLRALEEELLS 881
Cdd:PTZ00121 1500 deAKKAAEAKKKADEAKKAEeakKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELkkaeekkkaEEAKKAEEDKNMA 1579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 882 KRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRalkQEK 961
Cdd:PTZ00121 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK---KAE 1656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 962 EQLLLRCGELELLANPSGTENAAVCPVQMSSYQAGLVMGKVGDSGGSISKISKDLAEE-------SKPMIEDKIPFKESG 1034
Cdd:PTZ00121 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEkkkaeelKKAEEENKIKAEEAK 1736
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 1039770153 1035 REQlllPTRAQKPSHATVEPCESEKLQQELHALKAEQDDLRLQMEA 1080
Cdd:PTZ00121 1737 KEA---EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEA 1779
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
3018-3345 |
7.89e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.58 E-value: 7.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3018 SMQQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELgttlkAQHKRLKELEAFRSEVKEKTDEIHFL 3097
Cdd:pfam17380 264 TMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-----ERRRKLEEAEKARQAEMDRQAAIYAE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3098 SDTLAREQKNSLElqwALEKEKARSGHHEGREKE---------ELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKI 3168
Cdd:pfam17380 339 QERMAMERERELE---RIRQEERKRELERIRQEEiameisrmrELERLQMERQQKNERVRQELEAARKVKILEEERQRKI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3169 ESQKM-LHDAQLSEEQGRNLGLQaLLESEQVRiqEMKSTLDKERELYAQLQS-REDGGQPPPALPSEDLLKELQKQLEEK 3246
Cdd:pfam17380 416 QQQKVeMEQIRAEQEEARQREVR-RLEEERAR--EMERVRLEEQERQQQVERlRQQEEERKRKKLELEKEKRDRKRAEEQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3247 HSRIVEL-LSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQ-----EANTQGQKKMQElQSKVEELQRQLQEKRQQVYKL 3320
Cdd:pfam17380 493 RRKILEKeLEERKQAMIEEERKRKLLEKEMEERQKAIYEEErrreaEEERRKQQEMEE-RRRIQEQMRKATEERSRLEAM 571
|
330 340
....*....|....*....|....*.
gi 1039770153 3321 DLEGKRLQGLMQ-EFQKQELEPEEKP 3345
Cdd:pfam17380 572 EREREMMRQIVEsEKARAEYEATTPI 597
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
294-885 |
8.03e-05 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 48.89 E-value: 8.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 294 KIENLNAKEIQEkqalideLNTRVVEEEKKTVELKNKVTTADELLG---GLHEQLTQRNQEIQSLKLELGNSQQNERKCS 370
Cdd:TIGR01612 1059 EIEKEIGKNIEL-------LNKEILEEAEINITNFNEIKEKLKHYNfddFGKEENIKYADEINKIKDDIKNLDQKIDHHI 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 371 EEIKELMRTVE------ELQKRNLKDSwLETSAVRRVEQETQRKLSHLQAELDEMygKQIVQMKQELINQhMSQIEELKS 444
Cdd:TIGR01612 1132 KALEEIKKKSEnyideiKAQINDLEDV-ADKAISNDDPEEIEKKIENIVTKIDKK--KNIYDEIKKLLNE-IAEIEKDKT 1207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 445 QHKR---------EMENTL---KSDTNAAISKEQVNLMNAAINELNvrlqETHAQKEELKGELGVVLGEKSALQ--SQSN 510
Cdd:TIGR01612 1208 SLEEvkginlsygKNLGKLfleKIDEEKKKSEHMIKAMEAYIEDLD----EIKEKSPEIENEMGIEMDIKAEMEtfNISH 1283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 511 DLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEI-VAASESRkelelKHEAEITNYKIKLE------MLE 583
Cdd:TIGR01612 1284 DDDKDHHIISKKHDENISDIREKSLKIIEDFSEESDINDIKKELqKNLLDAQ-----KHNSDINLYLNEIAniynilKLN 1358
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 584 KEKNaVLDRMAESQEaELERLRTQL---LFSHEEELSKLKEDLEVEH-RINIEKLKDNLGIH--------YKQQIDGLQN 651
Cdd:TIGR01612 1359 KIKK-IIDEVKEYTK-EIEENNKNIkdeLDKSEKLIKKIKDDINLEEcKSKIESTLDDKDIDecikkikeLKNHILSEES 1436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 652 EMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEI---------------------EIL 710
Cdd:TIGR01612 1437 NIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIdkskgckdeadknakaieknkELF 1516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 711 KQEEKEKGTLEQEVQELQLK---------TEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEer 781
Cdd:TIGR01612 1517 EQYKKDVTELLNKYSALAIKnkfaktkkdSEIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKA-- 1594
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 782 siAVDPSTSKSADSRWQKEVAMLRKETEDlqqqCLYLNEEIEKQRNTFAFAEKNFEV-----NYQELQREYTCLLKIRDD 856
Cdd:TIGR01612 1595 --AIDIQLSLENFENKFLKISDIKKKIND----CLKETESIEKKISSFSIDSQDTELkengdNLNSLQEFLESLKDQKKN 1668
|
650 660
....*....|....*....|....*....
gi 1039770153 857 LEaTQTKQALEYESKLRALEEELLSKRGN 885
Cdd:TIGR01612 1669 IE-DKKKELDELDSEIEKIEIDVDQHKKN 1696
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2150-2362 |
8.20e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 8.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2150 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEK----LGFAM 2225
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAqkeeLAELL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2226 KESDSVSTRDQPMLFGKFAQLiqekeieidrlnEQFIKLQQQLKlttdnKVIEEQKEQIQDLETQIERLMSEREHEKKQR 2305
Cdd:COG4942 111 RALYRLGRQPPLALLLSPEDF------------LDAVRRLQYLK-----YLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039770153 2306 EEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVE 2362
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1920-2363 |
8.52e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.89 E-value: 8.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1920 QELESDQRRVEEERQLLCRQReAMRAEAGPVEQQFLQETEK-------LMKEKLEVQCQAEKVRGDLQKQVKALEIDVEE 1992
Cdd:TIGR00606 635 QDEESDLERLKEEIEKSSKQR-AMLAGATAVYSQFITQLTDenqsccpVCQRVFQTEAELQEFISDLQSKLRLAPDKLKS 713
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1993 QVSRFIELEQE-----------------KNAELTDLRQQSQALEKQLEKMRKFLDEQ------AIDREHERDVFQQE--- 2046
Cdd:TIGR00606 714 TESELKKKEKRrdemlglapgrqsiidlKEKEIPELRNKLQKVNRDIQRLKNDIEEQetllgtIMPEEESAKVCLTDvti 793
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2047 IQKLEHQLKAVPR--IQPVSEHQA----REVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQAL 2120
Cdd:TIGR00606 794 MERFQMELKDVERkiAQQAAKLQGsdldRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEK 873
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2121 LASAEPFpkvedQKRSGAVEADPELSLEVQlqverdATDRKQKEITNLEEQLEQFREELENKNDEVqellmqleIQRKES 2200
Cdd:TIGR00606 874 LQIGTNL-----QRRQQFEEQLVELSTEVQ------SLIREIKDAKEQDSPLETFLEKDQQEKEEL--------ISSKET 934
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2201 TTRLQelQQENRLFKDEIEKLGFAMKESDSVSTRdqpmlfGKFAQLIQeKEIEIDRLNEQFIKLQQQLK-----LTTDNK 2275
Cdd:TIGR00606 935 SNKKA--QDKVNDIKEKVKNIHGYMKDIENKIQD------GKDDYLKQ-KETELNTVNAQLEECEKHQEkinedMRLMRQ 1005
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2276 VIEEQKEQIQDLETQIERLMseREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQR--EGARTLPEDEESFKHQLDKVTAE 2353
Cdd:TIGR00606 1006 DIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKleENIDLIKRNHVLALGRQKGYEKE 1083
|
490
....*....|
gi 1039770153 2354 KLVLEQQVET 2363
Cdd:TIGR00606 1084 IKHFKKELRE 1093
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
343-563 |
9.42e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 343 EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRnLKDSWLETSAVRRVEQETQRKLSHLQAELDE---M 419
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR-IRALEQELAALEAELAELEKEIAELRAELEAqkeE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 420 YGKQIVQMkqelinQHMSQIEELK----SQHKREMENTLK--SDTNAAIsKEQVNLMNAAINELNVRLQETHAQKEELKG 493
Cdd:COG4942 106 LAELLRAL------YRLGRQPPLAlllsPEDFLDAVRRLQylKYLAPAR-REQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 494 ELgvvlgekSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKE 563
Cdd:COG4942 179 LL-------AELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
3076-3344 |
9.70e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 9.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3076 RLKELEAFRSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEdqkrrntqlnllle 3155
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLS-------------- 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3156 qqkqllnESQQKIESQKmlhdaqlseeqgrnlglqALLESEQVRIQEMKSTLDKERELYAQLQSREDGGQPPpalpseDL 3235
Cdd:TIGR02169 748 -------SLEQEIENVK------------------SELKELEARIEELEEDLHKLEEALNDLEARLSHSRIP------EI 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3236 LKELQKqLEEKHSRIVELLSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQ 3315
Cdd:TIGR02169 797 QAELSK-LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEA 875
|
250 260
....*....|....*....|....*....
gi 1039770153 3316 QVYKLDLEGKRLQGLMQEFQKQELEPEEK 3344
Cdd:TIGR02169 876 ALRDLESRLGDLKKERDELEAQLRELERK 904
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
670-781 |
1.19e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.85 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 670 QQNQLILENSKLRdlqeclVNSKSEEMNLQINElqkEIEILKQE-EKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEK 748
Cdd:PRK12704 38 EEAKRILEEAKKE------AEAIKKEALLEAKE---EIHKLRNEfEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
|
90 100 110
....*....|....*....|....*....|...
gi 1039770153 749 CAQLDAENNILKEEKRVLEDKLKMYSPSEQEER 781
Cdd:PRK12704 109 EEELEKKEKELEQKQQELEKKEEELEELIEEQL 141
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1991-2355 |
1.41e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1991 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEqaidREHERDVFQQEIQKLEHQLKAVpriqpvsEHQARE 2070
Cdd:PRK03918 164 YKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEE----VLREINEISSELPELREELEKL-------EKEVKE 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2071 VEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaveadpelsLEVQ 2150
Cdd:PRK03918 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-----------LSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2151 LQVERDATDRKQKEITNLEEQLEQFRE---ELENKNDEVQEllmqLEIQRKESTTRLQELQQENRLFKDEIEKlgfaMKE 2227
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEErikELEEKEERLEE----LKKKLKELEKRLEELEERHELYEEAKAK----KEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2228 SDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQqlKLTTDNKVIEEQKEQIQDL---------------ETQIE 2292
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITA--RIGELKKEIKELKKAIEELkkakgkcpvcgreltEEHRK 451
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039770153 2293 RLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGA------RTLPEDEESFKHQLDKVTAEKL 2355
Cdd:PRK03918 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKEseliklKELAEQLKELEEKLKKYNLEEL 520
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
397-974 |
1.59e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 47.73 E-value: 1.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 397 AVRRVEQETQRKLSHLQAELDEMYGKQIVqmkqELINQHMSQIEELKSQHKREMENTLKS----DTNAAI------SKEQ 466
Cdd:PRK02224 177 GVERVLSDQRGSLDQLKAQIEEKEEKDLH----ERLNGLESELAELDEEIERYEEQREQAretrDEADEVleeheeRREE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 467 VNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLST 546
Cdd:PRK02224 253 LETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 547 VEdlkaeiVAASEsrkelelkHEAEITNYKIKLEMLE------KEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSK 618
Cdd:PRK02224 333 CR------VAAQA--------HNEEAESLREDADDLEeraeelREEAAELESELEEAREAVEDRREEIeeLEEEIEELRE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 619 LKEDLEVEhrinIEKLKDNLgihykqqiDGLQNEMNRKMESMQCETDNLITQQNQlILENSKLRDLQECLVNSkseemnl 698
Cdd:PRK02224 399 RFGDAPVD----LGNAEDFL--------EELREERDELREREAELEATLRTARER-VEEAEALLEAGKCPECG------- 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 699 QINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEdDLQEKCAQLDAenniLKEEKRVLEDKLkmyspSEQ 778
Cdd:PRK02224 459 QPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIER----LEERREDLEELI-----AER 528
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 779 EERsiaVDPSTSKSADSRwqKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQReytcLLKIRDDL- 857
Cdd:PRK02224 529 RET---IEEKRERAEELR--ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES----LERIRTLLa 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 858 ---EATQTKQAL-EYESKLRALEEE----LLSKRGNPAAPKGKSSGIFPSETLEIGEVVEKDTTELMEKLEVTKREKLEL 929
Cdd:PRK02224 600 aiaDAEDEIERLrEKREALAELNDErrerLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREERDDL 679
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1039770153 930 SEKVSGLSEQLKqthctinslsaEVRALKQEKEQLLLRCGELELL 974
Cdd:PRK02224 680 QAEIGAVENELE-----------ELEELRERREALENRVEALEAL 713
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1915-2255 |
1.80e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 47.66 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1915 MNNRLQELESDQRRVEEERQLLCRQR-EAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQ 1993
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAkKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1994 VSRFIELEQEKNAELTDLRQQSQALEKQLEKMrKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQ 2073
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQEEELKLLA-KEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2074 LTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQK----RSGAVEADPELSLEV 2149
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKseeeKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2150 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESD 2229
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERS 499
|
330 340
....*....|....*....|....*.
gi 1039770153 2230 SVSTRDQPMLFGKFAQLIQEKEIEID 2255
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRII 525
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
268-955 |
1.82e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.73 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 268 KKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEK-------QALIDELNTRVVEEEKKTVELKNKVTTADELLGG 340
Cdd:TIGR00606 279 KQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKerelvdcQRELEKLNKERRLLNQEKTELLVEQGRLQLQADR 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 341 LHEQLTQRNQEIQSLKLELGNSQQNERKCSE-EIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEM 419
Cdd:TIGR00606 359 HQEHIRARDSLIQSLATRLELDGFERGPFSErQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGL 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 420 ygKQIVQMKQELINQHMSQIeelksQHKREMENTLKSDTNAAISKEQvnlmnaainelNVRLQETHAQKEELKGELGVVL 499
Cdd:TIGR00606 439 --GRTIELKKEILEKKQEEL-----KFVIKELQQLEGSSDRILELDQ-----------ELRKAERELSKAEKNSLTETLK 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 500 GEKSALQSQSNDLLEEVRFLREQVqkarqtiaEQENRLSEARKSLSTVEDLKA---EIVAASESRKELELKHEAEITNYK 576
Cdd:TIGR00606 501 KEVKSLQNEKADLDRKLRKLDQEM--------EQLNHHTTTRTQMEMLTKDKMdkdEQIRKIKSRHSDELTSLLGYFPNK 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 577 IKLE----MLEKEKNAVLDRMAESQE--AELERLRTQL---LFSHEEELSKLKEDL-----EVEHRINIEKLKDNLGIHY 642
Cdd:TIGR00606 573 KQLEdwlhSKSKEINQTRDRLAKLNKelASLEQNKNHInneLESKEEQLSSYEDKLfdvcgSQDEESDLERLKEEIEKSS 652
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 643 KQQ--IDGLQNEMNRKMESMQ------CETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEIL---- 710
Cdd:TIGR00606 653 KQRamLAGATAVYSQFITQLTdenqscCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMlgla 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 711 KQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDAENNILKEEKRVLEDKLKM---YSPSEQEERSIAVDP 787
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMerfQMELKDVERKIAQQA 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 788 STSKSADSrwQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRddlEATQTKQALE 867
Cdd:TIGR00606 813 AKLQGSDL--DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIG---TNLQRRQQFE 887
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 868 YESKLRALEEELLSKrgnpaAPKGKSSGIFPSETLeigevVEKDTTELMEKLEVTKREKLELSEKVSGLSEQLKQTHCTI 947
Cdd:TIGR00606 888 EQLVELSTEVQSLIR-----EIKDAKEQDSPLETF-----LEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957
|
....*...
gi 1039770153 948 NSLSAEVR 955
Cdd:TIGR00606 958 KDIENKIQ 965
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2091-2333 |
1.85e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2091 SKEQLQRDIQERNEEIEKLECRVRELEQAllasaepfpkvedqkrsgaveadpELSLEVQLQVERDATDRKQKEITNLEE 2170
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKE------------------------EKALLKQLAALERRIAALARRIRALEQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2171 QLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRlfkdeIEKLGFAMKESDSVSTRDQPMLFGKFAQLIQEK 2250
Cdd:COG4942 77 ELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGR-----QPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2251 EIEIDRLNEQFIKLQQQLKLTTD----------------NKVIEEQKEQIQDLETQIERLmserEHEKKQREEEVEQLTG 2314
Cdd:COG4942 152 AEELRADLAELAALRAELEAERAeleallaeleeeraalEALKAERQKLLARLEKELAEL----AAELAELQQEAEELEA 227
|
250
....*....|....*....
gi 1039770153 2315 VVEKLQQEVVSTEQQREGA 2333
Cdd:COG4942 228 LIARLEAEAAAAAERTPAA 246
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2159-2524 |
1.86e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2159 DRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRkESTTRLQELQqenrlfkDEIEKLGFAMKESDSVSTRDQpm 2238
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER-EKAERYQALL-------KEKREYEGYELLKEKEALERQ-- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2239 lfgkfaqlIQEKEIEIDRLNEQFIKLQQQLKltTDNKVIEEQKEQIQDLETQIERLMSErehEKKQREEEVEQLTGVVEK 2318
Cdd:TIGR02169 239 --------KEAIERQLASLEEELEKLTEEIS--ELEKRLEEIEQLLEELNKKIKDLGEE---EQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2319 LQ-QEVVSTEQQREGARTLPEDEEsfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECA 2397
Cdd:TIGR02169 306 LErSIAEKERELEDAEERLAKLEA----EIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2398 SNEELPSLPKESVHMTVHELGSdnLQPEDAPAQDVTKPLEKQTSLTRLQ-KSPEASRTQ---EIESLASSVGAKDVELTQ 2473
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINE--LKRELDRLQEELQRLSEELADLNAAiAGIEAKINEleeEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 2474 CREQTETIQEQ---AQSETDRLQKKLTDLQRSLEKFAAalvsqvQMEAAQEYVP 2524
Cdd:TIGR02169 460 LAADLSKYEQElydLKEEYDRVEKELSKLQRELAEAEA------QARASEERVR 507
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
271-747 |
2.05e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.59 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 271 EDLQAQISFLQEKLRAFEMEKDRKIENLNAKEiQEKQALIDELNTRVVEEEKKTvELKNKVTTADELLGGLHEQltqrNQ 350
Cdd:PRK01156 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAM-DDYNNLKSALNELSSLEDMKN-RYESEIKTAESDLSMELEK----NN 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 351 EIQSLKLELGNSQQNE-RKCSEEIKELMRTVEELQkrNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQ-----I 424
Cdd:PRK01156 274 YYKELEERHMKIINDPvYKNRNYINDYFKYKNDIE--NKKQILSNIDAEINKYHAIIKKLSVLQKDYNDYIKKKsryddL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 425 VQMKQELINQHM---SQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGE 501
Cdd:PRK01156 352 NNQILELEGYEMdynSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQR 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 502 KSALQSQSNDLLEEVRFLR--------------EQVQKARQTIAEQENRL-SEARKSLSTVEDLKAEIVAASESRKELEL 566
Cdd:PRK01156 432 IRALRENLDELSRNMEMLNgqsvcpvcgttlgeEKSNHIINHYNEKKSRLeEKIREIEIEVKDIDEKIVDLKKRKEYLES 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 567 KHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAEL--ERLRTQLLFSHEEELSKLKED----LEVEHRINIEKL---KDN 637
Cdd:PRK01156 512 EEINKSINEYNKIESARADLEDIKIKINELKDKHDkyEEIKNRYKSLKLEDLDSKRTSwlnaLAVISLIDIETNrsrSNE 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 638 LGIHYKQQIDGLqNEMNRKMESMQCETDNLITQ-QNQLILENSKLRDLQeclvnskseEMNLQINELQKEIEILKQEEKE 716
Cdd:PRK01156 592 IKKQLNDLESRL-QEIEIGFPDDKSYIDKSIREiENEANNLNNKYNEIQ---------ENKILIEKLRGKIDNYKKQIAE 661
|
490 500 510
....*....|....*....|....*....|.
gi 1039770153 717 KGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 747
Cdd:PRK01156 662 IDSIIPDLKEITSRINDIEDNLKKSRKALDD 692
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1868-2064 |
2.09e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1868 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAE- 1946
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEl 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1947 ------------AGPVE------------------QQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQvsr 1996
Cdd:COG4942 107 aellralyrlgrQPPLAlllspedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL--- 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039770153 1997 fieleQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVS 2064
Cdd:COG4942 184 -----EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2023-2199 |
2.16e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 2.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2023 EKMRKFLDEQAIDreherdvfqQEIQKLEHQLKAVPRiqpvsehqarEVEQLTNHLKEKTDRCSELLLSKEQLQRDIQER 2102
Cdd:COG1579 4 EDLRALLDLQELD---------SELDRLEHRLKELPA----------ELAELEDELAALEARLEAAKTELEDLEKEIKRL 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2103 NEEIEKLECRVRELEQALLA----------SAEpfpkVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQL 2172
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNvrnnkeyealQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEL 140
|
170 180
....*....|....*....|....*..
gi 1039770153 2173 EQFREELENKNDEVQELLMQLEIQRKE 2199
Cdd:COG1579 141 EEKKAELDEELAELEAELEELEAEREE 167
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
3017-3337 |
2.31e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3017 CSMQQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEA-FRSEVKEKTDEIH 3095
Cdd:pfam05483 164 CARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEeYKKEINDKEKQVS 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3096 FLSDTLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQkqllnesQQKIESQKMLH 3175
Cdd:pfam05483 244 LLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSL-------QRSMSTQKALE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3176 D---------AQLSEEQGRNLG-LQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppalpSEDLLKELQKQLEE 3245
Cdd:pfam05483 317 EdlqiatktiCQLTEEKEAQMEeLNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEK--------NEDQLKIITMELQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3246 KHSRIVELLSETEKYKLDSLQTRQQMEKDrqvhqktlQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKLDLEGK 3325
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAED--------EKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLT 460
|
330
....*....|..
gi 1039770153 3326 RLQGLMQEFQKQ 3337
Cdd:pfam05483 461 AIKTSEEHYLKE 472
|
|
| Seryl_tRNA_N |
pfam02403 |
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA ... |
692-752 |
2.35e-04 |
|
Seryl-tRNA synthetase N-terminal domain; This domain is found associated with the Pfam tRNA synthetase class II domain (pfam00587) and represents the N-terminal domain of seryl-tRNA synthetase.
Pssm-ID: 426757 [Multi-domain] Cd Length: 108 Bit Score: 43.35 E-value: 2.35e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 692 KSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQL 752
Cdd:pfam02403 44 ELEELQAERNELSKEIGQAKKKKEDADALIAEVKELKDELKALEAELKELEAELDKLLLTI 104
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1868-2036 |
2.38e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1868 RAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1947
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEYEALQKEIESLKR 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1948 gpvEQQFLQETEKLMKEKLEvqcqaekvrgDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRK 2027
Cdd:COG1579 104 ---RISDLEDEILELMERIE----------ELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
....*....
gi 1039770153 2028 FLDEQAIDR 2036
Cdd:COG1579 171 KIPPELLAL 179
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1832-2374 |
2.42e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 2.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1832 KVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEKTLFERQiqEKTDIIEHLEQE 1911
Cdd:PTZ00121 1365 KAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEK--KKADEAKKKAEE 1442
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1912 vlcmNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVE 1991
Cdd:PTZ00121 1443 ----AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKA 1518
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1992 EQVSRFIELEQEKNAELTDLRQQSQALEKQlEKMRKfldEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREV 2071
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKA-DELKK---AEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2072 EQLTNHLKEktdrcsELLLSKEQLQRDIQERN--EEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaveADPELSLEV 2149
Cdd:PTZ00121 1595 EEVMKLYEE------EKKMKAEEAKKAEEAKIkaEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK-----AEEENKIKA 1663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2150 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKEsd 2229
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEE-- 1741
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2230 svstrdqpmlfgkfaqliQEKEIEIDRLNEQFIKLQQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEV 2309
Cdd:PTZ00121 1742 ------------------DKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDI 1803
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 2310 EQLTGVVEklqqevvstEQQREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNV 2374
Cdd:PTZ00121 1804 FDNFANII---------EGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNE 1859
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
2976-3261 |
2.97e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2976 QKADRRSLLAEIEDLRAQINGGKMTLER-EQGTEKSSQELLDCSMQ----QKQSLEMQLELSSLRDRAAELQEQLSSEKM 3050
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRiENRLDELSQELSDASRKigeiEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3051 VVAELKSELAQAKLELGTTLKAQHKRLKELEAF-----RSEVKEKTDEIHFLSDTLAREQKNSLELQWALEKEKARSGHH 3125
Cdd:TIGR02169 752 EIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3126 EgREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKMLHDAQLSEEQGRNLGLQALLESEQVRIQEMKS 3205
Cdd:TIGR02169 832 E-KEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3206 TLDKERELYAQLQSR----------------EDGGQPPPALPSEDLLKELQK---------------------------- 3241
Cdd:TIGR02169 911 QIEKKRKRLSELKAKlealeeelseiedpkgEDEEIPEEELSLEDVQAELQRveeeiralepvnmlaiqeyeevlkrlde 990
|
330 340
....*....|....*....|....*.
gi 1039770153 3242 ------QLEEKHSRIVELLSETEKYK 3261
Cdd:TIGR02169 991 lkekraKLEEERKAILERIEEYEKKK 1016
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
302-560 |
3.13e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 3.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 302 EIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRtve 381
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERAR--- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 382 ELQKRNLKDSWLE--------TSAVRRVEqetqrklshlqaeldemYGKQIVQMKQELINQHMSQIEELKSQHKREMENT 453
Cdd:COG3883 94 ALYRSGGSVSYLDvllgsesfSDFLDRLS-----------------ALSKIADADADLLEELKADKAELEAKKAELEAKL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 454 LKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ 533
Cdd:COG3883 157 AELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAA 236
|
250 260
....*....|....*....|....*..
gi 1039770153 534 ENRLSEARKSLSTVEDLKAEIVAASES 560
Cdd:COG3883 237 AAAAAAAASAAGAGAAGAAGAAAGSAG 263
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1804-2201 |
3.62e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 46.71 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1804 LNISSRLQAAVEKLLEAISETNTQL--EHAKVTQTELMRESFRQKQEATeslhcLEELRERLQEESRAREQLAEELNKAE 1881
Cdd:pfam01576 365 LEQAKRNKANLEKAKQALESENAELqaELRTLQQAKQDSEHKRKKLEGQ-----LQELQARLSESERQRAELAEKLSKLQ 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1882 SVIDGYS--------------DEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEA 1947
Cdd:pfam01576 440 SELESVSsllneaegkniklsKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQL 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1948 GPVEQQfLQETEKLMKEKLEVQCQAEKVRGDLQKQVKALEIDVEEQVSRFIELEQEKN---AELTDL-------RQQSQA 2017
Cdd:pfam01576 520 STLQAQ-LSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNrlqQELDDLlvdldhqRQLVSN 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2018 LEKQLEKMRKFL-DEQAIDREHERDVFQQEIQKLEHQLKAVPriqpvsehQAREVEQLTNHLKEKTDRCSELLLSKEQLQ 2096
Cdd:pfam01576 599 LEKKQKKFDQMLaEEKAISARYAEERDRAEAEAREKETRALS--------LARALEEALEAKEELERTNKQLRAEMEDLV 670
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2097 RDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRsgaVEADPELSLEVQLQVERDATDRkqkEITNLEEQLEQFR 2176
Cdd:pfam01576 671 SSKDDVGKNVHELERSKRALEQQVEEMKTQLEELEDELQ---ATEDAKLRLEVNMQALKAQFER---DLQARDEQGEEKR 744
|
410 420
....*....|....*....|....*
gi 1039770153 2177 EELenkNDEVQELLMQLEIQRKEST 2201
Cdd:pfam01576 745 RQL---VKQVRELEAELEDERKQRA 766
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1920-2223 |
3.63e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.76 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1920 QELESDQRRVEE----ERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKlevqcQAEKVRGDLQKQVKALEIDVEEQVS 1995
Cdd:pfam12128 600 EELRERLDKAEEalqsAREKQAAAEEQLVQANGELEKASREETFARTALK-----NARLDLRRLFDEKQSEKDKKNKALA 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1996 RFIeleQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAidREHeRDVFQQEIQKLEHQLKAvpRIQPVSEHQAREVEQLT 2075
Cdd:pfam12128 675 ERK---DSANERLNSLEAQLKQLDKKHQAWLEEQKEQK--REA-RTEKQAYWQVVEGALDA--QLALLKAAIAARRSGAK 746
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2076 NHLKE-KTDRCSELLlskeqlQRDIQErnEEIEKLECRVRELEQallasaepfpKVEDQKRSGAVEADPELSLEVQLQVE 2154
Cdd:pfam12128 747 AELKAlETWYKRDLA------SLGVDP--DVIAKLKREIRTLER----------KIERIAVRRQEVLRYFDWYQETWLQR 808
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039770153 2155 RDatdRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKLGF 2223
Cdd:pfam12128 809 RP---RLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLAT 874
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
236-746 |
3.68e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 3.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 236 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKE-EDLQAQISFLQEKLRAFEMEKDRKIENlnAKEIQEKQALIDELN 314
Cdd:COG4717 38 TLLAFIRAMLLERLEKEADELFKPQGRKPELNLKElKELEEELKEAEEKEEEYAELQEELEEL--EEELEELEAELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 315 TRV--VEEEKKTVELKNKVTTADELLGGLH---EQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLK 389
Cdd:COG4717 116 EELekLEKLLQLLPLYQELEALEAELAELPerlEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 390 DSWLETSAVRRVEQETQRKLSHLQAELDemygkqivqmkqelinQHMSQIEELKSQHKREMENTLKSDTNAAIskeqvnL 469
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELE----------------ELEEELEQLENELEAAALEERLKEARLLL------L 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 470 MNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVED 549
Cdd:COG4717 254 IAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPD 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 550 LKAEIVAASESRKE--LELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQL--LFSHEEELSKLKEDLEV 625
Cdd:COG4717 334 LSPEELLELLDRIEelQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAeeYQELKEELEELEEQLEE 413
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 626 EHRINIEKLKDNLGIHYKQQIDGLQNEMNRKMEsmqcETDNLITQQNQLILENSKLRDLQEclvnskseemnlqINELQK 705
Cdd:COG4717 414 LLGELEELLEALDEEELEEELEELEEELEELEE----ELEELREELAELEAELEQLEEDGE-------------LAELLQ 476
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1039770153 706 EIEILKQEEKEkgtLEQEVQELQLKTEQLEKQLKEKEDDLQ 746
Cdd:COG4717 477 ELEELKAELRE---LAEEWAALKLALELLEEAREEYREERL 514
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2168-2379 |
4.21e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2168 LEEQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQQENRLF----------------KDEIEKLGFAMKESDSV 2231
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVdlseeaklllqqlselESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2232 STRDQPMLFGKFAQLIQEKEI-EIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERlmsEREHEKKQR 2305
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSpVIQQLRAQLAELEAELaelsaRYTPNHPDVIALRAQIAALRAQLQQ---EAQRILASL 318
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 2306 EEEVEQLTGVVEKLQQEVvstEQQREGARTLPEDEesfkhqldkvtAEKLVLEQQVETTNQVMTHMNNVLKEIN 2379
Cdd:COG3206 319 EAELEALQAREASLQAQL---AQLEARLAELPELE-----------AELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2176-2521 |
4.67e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.47 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2176 REELENKNDEVQELLMQLEIQRKESTTRLQELQQE-----------NRLFKDEIEKLGFAMKESDSVSTRDQpmlfgkfa 2244
Cdd:COG1196 174 KEEAERKLEATEENLERLEDILGELERQLEPLERQaekaeryrelkEELKELEAELLLLKLRELEAELEELE-------- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2245 QLIQEKEIEIDRLNEQFIKLQQQL-----KLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLtgvvEKL 2319
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELeelrlELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERL----EEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2320 QQEVVSTEQQREGARTlpedeesfkhQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASN 2399
Cdd:COG1196 322 EEELAELEEELEELEE----------ELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2400 EElpslpkesvhmTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSPEASRTQEIESLASSVGAKDVELTQCREQTE 2479
Cdd:COG1196 392 LR-----------AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 1039770153 2480 TIQ--EQAQSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQE 2521
Cdd:COG1196 461 LLEllAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
423-640 |
4.78e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 4.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 423 QIVQMKQELINQhmsqieELKSQHKreMENTLKSDTNAAISKEQ------VNLMN---AAINELNVRLQETHAQKEELKG 493
Cdd:PHA02562 184 QTLDMKIDHIQQ------QIKTYNK--NIEEQRKKNGENIARKQnkydelVEEAKtikAEIEELTDELLNLVMDIEDPSA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 494 ELGVVLGEKSALQSQSNDLLEEVRFLRE--QVQKARQTIAEQENRLSEARKSLSTV----EDLKAEIVAASE-------- 559
Cdd:PHA02562 256 ALNKLNTAAAKIKSKIEQFQKVIKMYEKggVCPTCTQQISEGPDRITKIKDKLKELqhslEKLDTAIDELEEimdefneq 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 560 SRKELELKHEAEITNYKIKLEmlekeknavlDRMAESQEAELERLRTQLLfSHEEELSKLKEDLE--VEHRINIEKLKDN 637
Cdd:PHA02562 336 SKKLLELKNKISTNKQSLITL----------VDKAKKVKAAIEELQAEFV-DNAEELAKLQDELDkiVKTKSELVKEKYH 404
|
...
gi 1039770153 638 LGI 640
Cdd:PHA02562 405 RGI 407
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
335-596 |
5.03e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 46.07 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 335 DELLGGLHE----QLTQRNQEIQSLKLElgnsqqNERKCSEEIKELMRTVEE-LQKRNLKDSWLETSAVRRVE---QETQ 406
Cdd:PRK05771 19 DEVLEALHElgvvHIEDLKEELSNERLR------KLRSLLTKLSEALDKLRSyLPKLNPLREEKKKVSVKSLEeliKDVE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 407 RKLSHLQAELDEMyGKQIVQMKQEL--INQHMSQIEELKS-----QHKREMENTLKSDtnAAISKEQVNLMNAAINELNV 479
Cdd:PRK05771 93 EELEKIEKEIKEL-EEEISELENEIkeLEQEIERLEPWGNfdldlSLLLGFKYVSVFV--GTVPEDKLEELKLESDVENV 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 480 RLqethaqKEELKGELGVVL-GEKSALQSQSnDLLEEVRFLREQVQ---KARQTIAEQENRLSEarkslstvedLKAEIV 555
Cdd:PRK05771 170 EY------ISTDKGYVYVVVvVLKELSDEVE-EELKKLGFERLELEeegTPSELIREIKEELEE----------IEKERE 232
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 1039770153 556 AASESRKELELKHEAEITNYKIKLEMlEKEKNAVLDRMAES 596
Cdd:PRK05771 233 SLLEELKELAKKYLEELLALYEYLEI-ELERAEALSKFLKT 272
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
280-862 |
5.12e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.58 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 280 LQEKLRAFEMEKDRKIENLN-AKEIQEKQALIDELNTRVVEEEKKTVELKNKVTT-ADELLGGLH--EQLTQRNQEIQSL 355
Cdd:TIGR01612 1089 IKEKLKHYNFDDFGKEENIKyADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENyIDEIKAQINdlEDVADKAISNDDP 1168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 356 KlELGNSQQN-------ERKCSEEIKELMRTVEELQK--------RNLKDSW---LETSAVRRVEQETQRKLSHLQAEld 417
Cdd:TIGR01612 1169 E-EIEKKIENivtkidkKKNIYDEIKKLLNEIAEIEKdktsleevKGINLSYgknLGKLFLEKIDEEKKKSEHMIKAM-- 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 418 EMYGKQIVQMKQEliNQHMSQIEELKSQHKREME--NTLKSDTNAAISKEQVNLMNAA-INELNVRLQETHAQKE---EL 491
Cdd:TIGR01612 1246 EAYIEDLDEIKEK--SPEIENEMGIEMDIKAEMEtfNISHDDDKDHHIISKKHDENISdIREKSLKIIEDFSEESdinDI 1323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 492 KGELGVVLGEKSALQSQSNDLLEEVRFLRE-----QVQKARQTIAEQENRLSEARKS----LSTVEDLKAEIVAASeSRK 562
Cdd:TIGR01612 1324 KKELQKNLLDAQKHNSDINLYLNEIANIYNilklnKIKKIIDEVKEYTKEIEENNKNikdeLDKSEKLIKKIKDDI-NLE 1402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 563 ELELKHEAEITNYKIK--LEMLEKEKNAVLDRMAES----QEAELERLRTQLLFSHEEE--------LSKLKEDLEVEHR 628
Cdd:TIGR01612 1403 ECKSKIESTLDDKDIDecIKKIKELKNHILSEESNIdtyfKNADENNENVLLLFKNIEMadnksqhiLKIKKDNATNDHD 1482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 629 INIEKLKDNL--GIHYKQQID--GLQNEMNRKM-ESMQCETDNLITQQNQLILEN--SKLRDLQECLVNSKSEEMNLQIN 701
Cdd:TIGR01612 1483 FNINELKEHIdkSKGCKDEADknAKAIEKNKELfEQYKKDVTELLNKYSALAIKNkfAKTKKDSEIIIKEIKDAHKKFIL 1562
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 702 ELQKEIEILKQEEKEKGTLEQEVQE----------LQLKTEQLEKQLKeKEDDLQEKCaqldaeNNILKEEKRVlEDKLK 771
Cdd:TIGR01612 1563 EAEKSEQKIKEIKKEKFRIEDDAAKndksnkaaidIQLSLENFENKFL-KISDIKKKI------NDCLKETESI-EKKIS 1634
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 772 MYSPSEQE-ERSIAVDPSTSKSAdsrWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCL 850
Cdd:TIGR01612 1635 SFSIDSQDtELKENGDNLNSLQE---FLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAIA 1711
|
650
....*....|..
gi 1039770153 851 LKirDDLEATQT 862
Cdd:TIGR01612 1712 NK--EEIESIKE 1721
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
5-578 |
5.29e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 5.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 5 ERQRKLAAGKAKLARFRQRKAQYDGDIPKKQKKKRTSSSKHDSSLHTDQQSGELCSESSQRVDLAgNPDCSGPERKHGQV 84
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA-KKKAEEDKKKADEL 1410
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 85 FSAEPESEISTTADECSSEINGCNSVMK----PRKPTDPLREEEFSLDDSSSEQGAQSSQTCLQMVEKelAEKQHDIEEL 160
Cdd:PTZ00121 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKkaeeAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK--AEEAKKADEA 1488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 161 TQELEEMR-----ASFGTEGLKQLQEFEAAIKQRDGiitqltanlQQARREKDDTMVEFLELTEQSQKLQiqfqHLQANE 235
Cdd:PTZ00121 1489 KKKAEEAKkkadeAKKAAEAKKKADEAKKAEEAKKA---------DEAKKAEEAKKADEAKKAEEKKKAD----ELKKAE 1555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 236 TLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDRKIENLNAKEIQEKQA-----LI 310
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAeeekkKV 1635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 311 DELNTRVVEEEKKTVELKNkvttADELLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIK---ELMRTVEELQKRN 387
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKK----AEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaEEAKKAEELKKKE 1711
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 388 LKDSwLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQElinQHMSQIEELKSQHKREMENTLKsDTNAAISKEQV 467
Cdd:PTZ00121 1712 AEEK-KKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE---EEKKKIAHLKKEEEKKAEEIRK-EKEAVIEEELD 1786
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 468 NLMNAAINELNVRLQETHAQKEEL-----KGELgVVLGEKSALQSQ-------SNDLLEEVRFLREQVQKARQTIAEQEN 535
Cdd:PTZ00121 1787 EEDEKRRMEVDKKIKDIFDNFANIieggkEGNL-VINDSKEMEDSAikevadsKNMQLEEADAFEKHKFNKNNENGEDGN 1865
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 1039770153 536 RLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIK 578
Cdd:PTZ00121 1866 KEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMA 1908
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
471-882 |
5.49e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.91 E-value: 5.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 471 NAAINELNVRLQETHAQKEELKGELGVVLGEKSALqsqsnDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTVEDL 550
Cdd:COG4717 87 EEEYAELQEELEELEEELEELEAELEELREELEKL-----EKLLQLLPLYQELEALEAELAELPERLEELEERLEELREL 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 551 KAEIVAASESRKELE-----------LKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEaELERLRTQLlfsheEELSKL 619
Cdd:COG4717 162 EEELEELEAELAELQeeleelleqlsLATEEELQDLAEELEELQQRLAELEEELEEAQE-ELEELEEEL-----EQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 620 KEDLEVEHRINIEKL-------------KDNLGIHYKQQIDGLQ-----------NEMNRKMESMQCETDNLITQQNQLI 675
Cdd:COG4717 236 LEAAALEERLKEARLllliaaallallgLGGSLLSLILTIAGVLflvlgllallfLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 676 LENSKLRDLQECLVNSKSEEmNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQ---LEKQLKEKEDDLQEKCAQL 752
Cdd:COG4717 316 LEEEELEELLAALGLPPDLS-PEELLELLDRIEELQELLREAEELEEELQLEELEQEIaalLAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 753 DAENNiLKEEKRVLEDKLKMYSPSEQEERSiAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFA 832
Cdd:COG4717 395 EEYQE-LKEELEELEEQLEELLGELEELLE-ALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 833 EKNFEVNY-----QELQREYTCLLKIRDDLEATQTKQALEYESKLRALEEELLSK 882
Cdd:COG4717 473 ELLQELEElkaelRELAEEWAALKLALELLEEAREEYREERLPPVLERASEYFSR 527
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
2156-2385 |
5.67e-04 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 45.62 E-value: 5.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2156 DATDRKQKEITNLEEQLEQFREELENKN--------DEVQELLMQLEIQRKESTTRLQELQQEnrlFKDEIEKLGFAMKE 2227
Cdd:pfam06160 146 PAIDELEKQLAEIEEEFSQFEELTESGDylearevlEKLEEETDALEELMEDIPPLYEELKTE---LPDQLEELKEGYRE 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2228 sdsvstrdqpMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTdnkvIEEQKEQIQDLETQIERLMSEREHEKKQREE 2307
Cdd:pfam06160 223 ----------MEEEGYALEHLNVDKEIQQLEEQLEENLALLENLE----LDEAEEALEEIEERIDQLYDLLEKEVDAKKY 288
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2308 EVEQLTGVVEKLQQ-EVVSTEQQREGAR-----TLPEDE----ESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKE 2377
Cdd:pfam06160 289 VEKNLPEIEDYLEHaEEQNKELKEELERvqqsyTLNENElervRGLEKQLEELEKRYDEIVERLEEKEVAYSELQEELEE 368
|
....*...
gi 1039770153 2378 INFKMDQI 2385
Cdd:pfam06160 369 ILEQLEEI 376
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1776-2189 |
5.74e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 5.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1776 EEGAELSQRLVRSGFAgpviDPENEELMLNISSrLQAAVEKLLEAISETNTQLEHAKvTQTELMRESFRQKQEATESLHC 1855
Cdd:PRK02224 290 ELEEERDDLLAEAGLD----DADAEAVEARREE-LEDRDEELRDRLEECRVAAQAHN-EEAESLREDADDLEERAEELRE 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1856 LEELRERLQEESR-AREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQR----RVE 1930
Cdd:PRK02224 364 EAAELESELEEAReAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRtareRVE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1931 EERQLL-----------------------CRQR-EAMRAEAGPVEQQFLQETEKLmkEKLEVQCQAEKVRGDLQKQVKAL 1986
Cdd:PRK02224 444 EAEALLeagkcpecgqpvegsphvetieeDRERvEELEAELEDLEEEVEEVEERL--ERAEDLVEAEDRIERLEERREDL 521
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1987 EIDVEEQVSRfIELEQEKNAELtdlRQQSQALEKQLEKMRkfldEQAIDREHERDVFQQEIQKLEHQLKAVP-RIQpvse 2065
Cdd:PRK02224 522 EELIAERRET-IEEKRERAEEL---RERAAELEAEAEEKR----EAAAEAEEEAEEAREEVAELNSKLAELKeRIE---- 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2066 hQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIEKLECRVRELEQALLASAepfpkVED--QKRSGAVEADP 2143
Cdd:PRK02224 590 -SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR-----IEEarEDKERAEEYLE 663
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1039770153 2144 ELslEVQLQVERDATDRKQKEITNLE---EQLEQFREELENKNDEVQEL 2189
Cdd:PRK02224 664 QV--EEKLDELREERDDLQAEIGAVEnelEELEELRERREALENRVEAL 710
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
694-988 |
6.41e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 46.05 E-value: 6.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 694 EEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCAQLDaENNILKEEKRVLEDKLKM- 772
Cdd:PRK01156 190 EKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLED-MKNRYESEIKTAESDLSMe 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 773 ------YSPSEQEERSIAVDPSTSKSADSRwqkEVAMLRKETEDLQQQCLYLNEEIEKQRNTFAFAE--KNFEVNYQELQ 844
Cdd:PRK01156 269 leknnyYKELEERHMKIINDPVYKNRNYIN---DYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSvlQKDYNDYIKKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 845 REYTCLLKIRDDLEATQTKqaleYESKLRALEEelLSKRGNPAAPKGKSSGIFPSETLEIGEVvekDTTELMEKLEVTKR 924
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMD----YNSYLKSIES--LKKKIEEYSKNIERMSAFISEILKIQEI---DPDAIKKELNEINV 416
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 925 EKLELSEKVSglseqlkqthctinSLSAEVRALKQEKEqlllrcgelELLANPSGTENAAVCPV 988
Cdd:PRK01156 417 KLQDISSKVS--------------SLNQRIRALRENLD---------ELSRNMEMLNGQSVCPV 457
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
2000-2221 |
7.37e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.39 E-value: 7.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2000 LEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQaidrEHERDVFQQEIQklehqlkavprIQPVSEHQAREVEQLTnhlk 2079
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEA----EAALEEFRQKNG-----------LVDLSEEAKLLLQQLS---- 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2080 ektdrcselllskeQLQRDIQERNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAVEADpELSLEVQLQVERDATD 2159
Cdd:COG3206 223 --------------ELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQ-LAELEAELAELSARYT 287
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039770153 2160 RKQKEITNLEEQLEQFREELENkndEVQELLMQLEIQRKESTTRLQELQQENRLFKDEIEKL 2221
Cdd:COG3206 288 PNHPDVIALRAQIAALRAQLQQ---EAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
137-828 |
9.29e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 45.42 E-value: 9.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 137 QSSQTCLQMVEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQ---QARREKDDTMVE 213
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKI-MKLDNEIKALKSRKKQMEKDNSELELKMEkvfQGTDEQLNDLYH 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 214 FLELTEQSQKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKDR 293
Cdd:TIGR00606 309 NHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFS 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 294 KIENLNA----KEIQEKQA-----LIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNSQQ 364
Cdd:TIGR00606 389 ERQIKNFhtlvIERQEDEAktaaqLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 365 NERKCSEEIKELMRTVEELQK----RNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYGKQIVQMKQELINQHMS--- 437
Cdd:TIGR00606 469 SSDRILELDQELRKAERELSKaeknSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMdkd 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 438 -QIEELKSQHKREMENTLK--------SDTNAAISKEqVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQ 508
Cdd:TIGR00606 549 eQIRKIKSRHSDELTSLLGyfpnkkqlEDWLHSKSKE-INQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDK 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 509 ------SNDLLEEVRFLREQVQKAR--------------QTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKH 568
Cdd:TIGR00606 628 lfdvcgSQDEESDLERLKEEIEKSSkqramlagatavysQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLA 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 569 EAEITNYKIKLEMLEKEKNAVLDrMAESQEAELERLrtqllfshEEELSKLKEDLEVEHRiNIEKLKDNLGIHYKQqidg 648
Cdd:TIGR00606 708 PDKLKSTESELKKKEKRRDEMLG-LAPGRQSIIDLK--------EKEIPELRNKLQKVNR-DIQRLKNDIEEQETL---- 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 649 LQNEMNRKMESMQCETDNLITQQNQLILENSKlRDLQECLVNSKSEEMNLQINELQKEIEilkQEEKEKGTLEQEVQELQ 728
Cdd:TIGR00606 774 LGTIMPEEESAKVCLTDVTIMERFQMELKDVE-RKIAQQAAKLQGSDLDRTVQQVNQEKQ---EKQHELDTVVSKIELNR 849
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 729 LKTEqlekqlkekedDLQEKCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKET 808
Cdd:TIGR00606 850 KLIQ-----------DQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918
|
730 740
....*....|....*....|
gi 1039770153 809 EDLQQQclylNEEIEKQRNT 828
Cdd:TIGR00606 919 EKDQQE----KEELISSKET 934
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
146-634 |
9.68e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 9.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 146 VEKELAEKQHDIEELTQELEEMRAsfgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDD---TMVEFLELTEQSQ 222
Cdd:PRK02224 178 VERVLSDQRGSLDQLKAQIEEKEE---KDLHERLNGLESELAELDEEIERYEEQREQARETRDEadeVLEEHEERREELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 223 KLQIQFQHLQAN--------ETLQN--STLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLQEKLRAFEMEKD 292
Cdd:PRK02224 255 TLEAEIEDLRETiaetererEELAEevRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 293 RKIENLNaKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLGGLHEQLTQRNQEIQSLKLELGNS---------- 362
Cdd:PRK02224 335 VAAQAHN-EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDApvdlgnaedf 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 363 ----QQNERKCSEEIKELMRTVEELQKRNLKDSWL-------------ETSAVRRVEQETQRKLSHLQAELDEmygkqiV 425
Cdd:PRK02224 414 leelREERDELREREAELEATLRTARERVEEAEALleagkcpecgqpvEGSPHVETIEEDRERVEELEAELED------L 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 426 QMKQELINQHMSQIEELKSQHKRemenTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSAL 505
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVEAEDR----IERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 506 QSQSNDLLEEVRFL----------REQVQKARQTIAEQEN------RLSEARKSLSTVEDLKAEIVAA-SESRKELELKH 568
Cdd:PRK02224 564 EEEAEEAREEVAELnsklaelkerIESLERIRTLLAAIADaedeieRLREKREALAELNDERRERLAEkRERKRELEAEF 643
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 569 EAE---------------ITNYKIKLEMLEKEKNAVLDR--MAESQEAELERLRTQL------------LFSHEEELSKL 619
Cdd:PRK02224 644 DEArieearedkeraeeyLEQVEEKLDELREERDDLQAEigAVENELEELEELRERRealenrvealeaLYDEAEELESM 723
|
570
....*....|....*.
gi 1039770153 620 KEDLEVEHRI-NIEKL 634
Cdd:PRK02224 724 YGDLRAELRQrNVETL 739
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1867-2081 |
9.77e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 9.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1867 SRAREQLAEELNKAESVIDGYSDEKTLFERQIQEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAE 1946
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1947 agpveqqfLQETEKLMKEKLEVQCQAEKVR-----------GDLQKQVKALEIDVEEQVSRFIELEQEKnAELTDLRQQS 2015
Cdd:COG4942 99 --------LEAQKEELAELLRALYRLGRQPplalllspedfLDAVRRLQYLKYLAPARREQAEELRADL-AELAALRAEL 169
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039770153 2016 QALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEK 2081
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
652-964 |
1.05e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 652 EMNRKMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKT 731
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 732 EQLEKQLKEKEDDLQEKCAQLDAENNilKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRWQKEVAMLRKETEDL 811
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNKKIKDLGE--EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 812 QQqclyLNEEIEKQRntfafaeknfeVNYQELQREYTCLLKIRDDLEAtqtkQALEYESKLRALEEELLSKRgnpaapkg 891
Cdd:TIGR02169 339 EE----LEREIEEER-----------KRRDKLTEEYAELKEELEDLRA----ELEEVDKEFAETRDELKDYR-------- 391
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039770153 892 kssgifpsetleigevvekdttelmEKLEVTKREKLELSEKVSGLSEQLKQTHCTINSLSAEVRALKQEKEQL 964
Cdd:TIGR02169 392 -------------------------EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINEL 439
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
1947-2305 |
1.34e-03 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 44.29 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1947 AGPVEQQfLQETEKLMKEKLEVQCQAEKVR---GDLQKQVKALEIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLE 2023
Cdd:pfam19220 33 IEPIEAI-LRELPQAKSRLLELEALLAQERaayGKLRRELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2024 KMRkflDEQAIDREHERDVFQ--QEIQKLEHQLKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSElllSKEQLQRDIQE 2101
Cdd:pfam19220 112 ELR---DKTAQAEALERQLAAetEQNRALEEENKALREEAQAAEKALQRAEGELATARERLALLEQ---ENRRLQALSEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2102 RNEEIEKLECRVRELEQALLASAEPFPKVEDQ---KRSGAVEADPELSLEV-QLQVERDATDRKQKEITN----LEEQLE 2173
Cdd:pfam19220 186 QAAELAELTRRLAELETQLDATRARLRALEGQlaaEQAERERAEAQLEEAVeAHRAERASLRMKLEALTAraaaTEQLLA 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2174 QFREELENKNDEVQEL---LMQLEIQRKESTTRLQELQQENrlfKDEIEKLGFAMKESDSVSTRDqpmlfGKFAQLIQEK 2250
Cdd:pfam19220 266 EARNQLRDRDEAIRAAerrLKEASIERDTLERRLAGLEADL---ERRTQQFQEMQRARAELEERA-----EMLTKALAAK 337
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 2251 EIEIDRLNEQFIKLQQQLKLTTDnkvieEQKEQIQDLETQIERLMSEREHEKKQR 2305
Cdd:pfam19220 338 DAALERAEERIASLSDRIAELTK-----RFEVERAALEQANRRLKEELQRERAER 387
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1894-2486 |
1.36e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1894 FERQIQEKTDIIEHleqevlcmNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAE 1973
Cdd:pfam05483 136 LEEEIQENKDLIKE--------NNATRHLCNLLKETCARSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAE 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1974 KVRGDLQKQVKaleidveEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKLEHQ 2053
Cdd:pfam05483 208 NARLEMHFKLK-------EDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQ 280
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2054 LKAVPRIQPVSEHQAREVEQLTNHLKEKTDRCSELLLSKEQLQRDIQERNEEIE------------------KLECRVRE 2115
Cdd:pfam05483 281 DENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEaqmeelnkakaahsfvvtEFEATTCS 360
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2116 LEQALLASAEPFPKVED---------QKRSGAVE--------------------ADPELSLEVQLQVERDATDRK----- 2161
Cdd:pfam05483 361 LEELLRTEQQRLEKNEDqlkiitmelQKKSSELEemtkfknnkeveleelkkilAEDEKLLDEKKQFEKIAEELKgkeqe 440
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2162 --------QKEITNLEEQLEQFREELENKNDEVQELLMQLE---IQRKESTTRLQELQQENRLFKDEIEKLGFAMK--ES 2228
Cdd:pfam05483 441 lifllqarEKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEkekLKNIELTAHCDKLLLENKELTQEASDMTLELKkhQE 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2229 DSVSTRDQPMLFGKFAQLIQEKEI----EIDRLNEQFIKLQQQLKLTTDNKviEEQKEQIQDLETQIERLMSEREHEKKQ 2304
Cdd:pfam05483 521 DIINCKKQEERMLKQIENLEEKEMnlrdELESVREEFIQKGDEVKCKLDKS--EENARSIEYEVLKKEKQMKILENKCNN 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2305 REEEVEQLTGVVEKLQQEvvsteqqregARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHM-NNVLKEINFKMD 2383
Cdd:pfam05483 599 LKKQIENKNKNIEELHQE----------NKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIiDNYQKEIEDKKI 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2384 QITQSLCNLNKECASNEELPSLPKESVHMTVHELGSDNLQPEDAPAQdVTKPLEKQTSLTRLQKSPEASRTQEIESLASS 2463
Cdd:pfam05483 669 SEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKHQ-YDKIIEERDSELGLYKNKEQEQSSAKAALEIE 747
|
650 660
....*....|....*....|...
gi 1039770153 2464 VGAKDVELTQCREQTETIQEQAQ 2486
Cdd:pfam05483 748 LSNIKAELLSLKKQLEIEKEEKE 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
2250-2602 |
1.37e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2250 KEIEIDRLNEQFIKLQQ-QLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQ 2328
Cdd:COG1196 220 EELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2329 QREGARTLPEDEESFKHQLDKVTAEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQITQSLCNLNKECASNEELpslpKE 2408
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE----LA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2409 SVHMTVHELGSDNLQPEDAPAQDVTKPLEKQTSLTRLQKSpEASRTQEIESLASSVGAKDVELTQCREQTETIQE---QA 2485
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLER-LERLEEELEELEEALAELEEEEEEEEEALEEAAEeeaEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2486 QSETDRLQKKLTDLQRSLEKFAAALVSQVQMEAAQEYVPFHQEKQPVSSAPGSTDIQNANGLTGAsteSLIPTVTLRLAE 2565
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGL---RGLAGAVAVLIG 531
|
330 340 350
....*....|....*....|....*....|....*..
gi 1039770153 2566 VESRVAEVHSGTMSEKLVGIVGGNAsETEKRVIELQK 2602
Cdd:COG1196 532 VEAAYEAALEAALAAALQNIVVEDD-EVAAAAIEYLK 567
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
146-722 |
1.56e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 44.51 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 146 VEKELAEKQHDIEELTQELEEMRASFgTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQKLQ 225
Cdd:PRK01156 188 LEEKLKSSNLELENIKKQIADDEKSH-SITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEIKTAESDLS 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 226 IQfqhLQANETLQNST--LSRTATDLLQAKRQ----IFTQQQQLQDYQKKEEDLQAQISFLQEKLR-AFEMEKDRkienl 298
Cdd:PRK01156 267 ME---LEKNNYYKELEerHMKIINDPVYKNRNyindYFKYKNDIENKKQILSNIDAEINKYHAIIKkLSVLQKDY----- 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 299 naKEIQEKQALIDELNTRVVEeekktvelknkvttadelLGGLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMR 378
Cdd:PRK01156 339 --NDYIKKKSRYDDLNNQILE------------------LEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILK 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 379 ----TVEELQKRnlkdswleTSAVRRVEQETQRKLSHLQAELDEMYGKQI-VQMKQELINQHM------SQIEELKSQHK 447
Cdd:PRK01156 399 iqeiDPDAIKKE--------LNEINVKLQDISSKVSSLNQRIRALRENLDeLSRNMEMLNGQSvcpvcgTTLGEEKSNHI 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 448 REMENtlksdtnaaiskEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKAR 527
Cdd:PRK01156 471 INHYN------------EKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKI 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 528 QTIAEQENRLSEARKSLST--VEDLKAEivaASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAE--SQEAELER 603
Cdd:PRK01156 539 NELKDKHDKYEEIKNRYKSlkLEDLDSK---RTSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEieIGFPDDKS 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 604 LRTQLLFSHEEELSKL--KEDLEVEHRINIEKLKDNLGiHYKQQIDGL------QNEMNRKMESMQCETDNLITQQNQLI 675
Cdd:PRK01156 616 YIDKSIREIENEANNLnnKYNEIQENKILIEKLRGKID-NYKKQIAEIdsiipdLKEITSRINDIEDNLKKSRKALDDAK 694
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1039770153 676 LENSKLRDLQECLVnSKSEEMNLQINELQKEIEILKQEEKEKGTLEQ 722
Cdd:PRK01156 695 ANRARLESTIEILR-TRINELSDRINDINETLESMKKIKKAIGDLKR 740
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
2089-2384 |
1.62e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2089 LLSKEQLQRDIQERN--EEIEKLEC-RVRELEQALLASAEPFPKVEDQKRSGAVEADPELSleVQLQVERDATDRkqkei 2165
Cdd:pfam17380 274 LLHIVQHQKAVSERQqqEKFEKMEQeRLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAA--IYAEQERMAMER----- 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2166 tnlEEQLEQFR-EELENKNDEVQELLMQLEIQRKESTTRLQ-ELQQENRLFKDEIEklgfamkesdsvSTRDQPMLFGKF 2243
Cdd:pfam17380 347 ---ERELERIRqEERKRELERIRQEEIAMEISRMRELERLQmERQQKNERVRQELE------------AARKVKILEEER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2244 AQLIQEKEIEIDRLneqfiklqqqlklttdnkvieeQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEv 2323
Cdd:pfam17380 412 QRKIQQQKVEMEQI----------------------RAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQ- 468
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 2324 vstEQQREGARTLPEDEESFKHQLDKVtaEKLVLEQQVETTNQVMTHMNNVLKEINFKMDQ 2384
Cdd:pfam17380 469 ---EEERKRKKLELEKEKRDRKRAEEQ--RRKILEKELEERKQAMIEEERKRKLLEKEMEE 524
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
291-727 |
1.70e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.68 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 291 KDRKIENLNAKE---IQEKQALIDELNTRVVEEEKKTVELKNKVTTADEllggLHEQLTQRNQEIQSLKLELGNSQQNER 367
Cdd:COG5022 848 IQKFGRSLKAKKrfsLLKKETIYLQSAQRVELAERQLQELKIDVKSISS----LKLVNLELESEIIELKKSLSSDLIENL 923
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 368 KC-SEEIKELMRTVEELQKRNLKDSWLETSAVRRVEQETQRKLSHLQAELDEMYgkqivQMKQELINQHMSQIEELKsQH 446
Cdd:COG5022 924 EFkTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLL-----KKSTILVREGNKANSELK-NF 997
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 447 KREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGvvlgeksaLQSQSNDLLEEVRFLREQVqKA 526
Cdd:COG5022 998 KKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKP--------LQKLKGLLLLENNQLQARY-KA 1068
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 527 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNyKIKLEMLekeKNAVLDRMAESQEAELERLR- 605
Cdd:COG5022 1069 LKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQ-FIVAQMI---KLNLLQEISKFLSQLVNTLEp 1144
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 606 -TQLLFSHEEELSKLKEDLEVEHRINIEKLKDNLGIH------YKQQIDGLQNEMNRKMESMQCETD------------- 665
Cdd:COG5022 1145 vFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKRlyqsalYDEKSKLSSSEVNDLKNELIALFSkifsgwprgdklk 1224
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039770153 666 ------NLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILK-QEEKEKGTLEQEVQEL 727
Cdd:COG5022 1225 klisegWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKlEEEVLPATINSLLQYI 1293
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1920-2294 |
1.74e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.56 E-value: 1.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1920 QELESDQRRVEEERQLL---CRQREAMRAEAGPVEQQFLQETEKL--MKEKLEVQCQAEKVRGDLQKqvkaLEIDVEEQV 1994
Cdd:PRK04863 293 RELYTSRRQLAAEQYRLvemARELAELNEAESDLEQDYQAASDHLnlVQTALRQQEKIERYQADLEE----LEERLEEQN 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1995 srfiELEQEKNAELTDLRQQSQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEIQKLEhQLKAVPRIQPVSEHQARE- 2070
Cdd:PRK04863 369 ----EVVEEADEQQEENEARAEAAEEEVDELKSQLAdyQQALDVQQTRAIqYQQAVQALE-RAKQLCGLPDLTADNAEDw 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2071 VEQLTNHLKEKTDRcselLLSKEQLQRDIQERNEEIEKLECRVREL------EQALLASAEPFPKVEDQK----RSGAVE 2140
Cdd:PRK04863 444 LEEFQAKEQEATEE----LLSLEQKLSVAQAAHSQFEQAYQLVRKIagevsrSEAWDVARELLRRLREQRhlaeQLQQLR 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2141 A---DPELSLEVQLQVERDATDRKQKEITNLE---------EQLEQFREELENKNDEVQELLMQLEIQRKESTTRLQELQ 2208
Cdd:PRK04863 520 MrlsELEQRLRQQQRAERLLAEFCKRLGKNLDdedeleqlqEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2209 Q---ENRLFKDEIEKLGFAMKESDSVSTR-DQPMLfgkfAQLIQEKEIEIDRlneqfiklqqqlklttdnkviEEQKEQI 2284
Cdd:PRK04863 600 ArapAWLAAQDALARLREQSGEEFEDSQDvTEYMQ----QLLERERELTVER---------------------DELAARK 654
|
410
....*....|
gi 1039770153 2285 QDLETQIERL 2294
Cdd:PRK04863 655 QALDEEIERL 664
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1971-2209 |
1.75e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 1.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1971 QAEKVrGDLQKQVKALEIDVEEQVsrfiELEQEKNAELTDLRQQSQALEKQLEKMRKFLD--EQAIDREHERDV-FQQEI 2047
Cdd:COG3096 345 QQEKI-ERYQEDLEELTERLEEQE----EVVEEAAEQLAEAEARLEAAEEEVDSLKSQLAdyQQALDVQQTRAIqYQQAV 419
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2048 QKLE--HQLKAVPRIQP------VSEHQAREvEQLTNHLKEKTDRCSELLLSKEQLQRDIQ---------ERNEEIEK-- 2108
Cdd:COG3096 420 QALEkaRALCGLPDLTPenaedyLAAFRAKE-QQATEEVLELEQKLSVADAARRQFEKAYElvckiagevERSQAWQTar 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2109 -LECRVRELeQALLASAEPFpkvedqkrsGAVEADPELSLEVQLQVERDATDRKQK---------EITNLEEQLEQFREE 2178
Cdd:COG3096 499 eLLRRYRSQ-QALAQRLQQL---------RAQLAELEQRLRQQQNAERLLEEFCQRigqqldaaeELEELLAELEAQLEE 568
|
250 260 270
....*....|....*....|....*....|.
gi 1039770153 2179 LENKNDEVQELLMQLEIQRKESTTRLQELQQ 2209
Cdd:COG3096 569 LEEQAAEAVEQRSELRQQLEQLRARIKELAA 599
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
3007-3342 |
1.87e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3007 TEKSSQelldcSMQQKQSLEMQLEL--SSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRL----KEL 3080
Cdd:pfam15921 284 TEKASS-----ARSQANSIQSQLEIiqEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLvlanSEL 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3081 EAFRSEVKEKTDEIHFLSDTLAR--EQKNSLELQWALEKEK-ARSGHHEGREKEELEDLKFSLEDqkrRNTQLNLLLEQQ 3157
Cdd:pfam15921 359 TEARTERDQFSQESGNLDDQLQKllADLHKREKELSLEKEQnKRLWDRDTGNSITIDHLRRELDD---RNMEVQRLEALL 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3158 KQLLNESQQKIESqkmlhdaQLSEEQGRNLGLQAlLESEQVRIQEMKSTLDK-ERELYAQLQSREDGGQPPPALPSEdlL 3236
Cdd:pfam15921 436 KAMKSECQGQMER-------QMAAIQGKNESLEK-VSSLTAQLESTKEMLRKvVEELTAKKMTLESSERTVSDLTAS--L 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3237 KELQKQLEEKHSRIVELLSETEkYKLDSLQTRqqmeKDRQVHQKTLQTEQEANtqgQKKMQELQSKVEELQRQLQEKRQQ 3316
Cdd:pfam15921 506 QEKERAIEATNAEITKLRSRVD-LKLQELQHL----KNEGDHLRNVQTECEAL---KLQMAEKDKVIEILRQQIENMTQL 577
|
330 340
....*....|....*....|....*.
gi 1039770153 3317 VYkldlEGKRLQGLMQeFQKQELEPE 3342
Cdd:pfam15921 578 VG----QHGRTAGAMQ-VEKAQLEKE 598
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1967-2317 |
1.93e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1967 EVQCQAEKV--RGDLQKQVKALEIDVEeQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMrkfldeqaidreherdvfQ 2044
Cdd:PRK11281 40 DVQAQLDALnkQKLLEAEDKLVQQDLE-QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQA------------------Q 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2045 QEIQKLEHQLKAVPRiqpvSEHQAREVEQLTNHLKEKTDrcselllSKEQLQRDIQERNEEIEKLECRVRELEQALLASA 2124
Cdd:PRK11281 101 AELEALKDDNDEETR----ETLSTLSLRQLESRLAQTLD-------QLQNAQNDLAEYNSQLVSLQTQPERAQAALYANS 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2125 EPFPKVEDQKRSGAVEADP-ELSLEVQLQVERDAtdrkqkeitnLEEQLEQFREELENkNDEVQELLmqlEIQRKESTTR 2203
Cdd:PRK11281 170 QRLQQIRNLLKGGKVGGKAlRPSQRVLLQAEQAL----------LNAQNDLQRKSLEG-NTQLQDLL---QKQRDYLTAR 235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2204 LQELQQENRLFKDEI---------EKLGFAMKESDSVSTRDQPMLFGKFAQ-------LIQE---------KEIEI---- 2254
Cdd:PRK11281 236 IQRLEHQLQLLQEAInskrltlseKTVQEAQSQDEAARIQANPLVAQELEInlqlsqrLLKAteklntltqQNLRVknwl 315
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2255 DRLN-------EQF-----------IKLQQQLKLTTD-------NKV---------IEEQKEQIQDLETQIERLmsEREH 2300
Cdd:PRK11281 316 DRLTqsernikEQIsvlkgslllsrILYQQQQALPSAdlieglaDRIadlrleqfeINQQRDALFQPDAYIDKL--EAGH 393
|
410
....*....|....*..
gi 1039770153 2301 EKKQREEEVEQLTGVVE 2317
Cdd:PRK11281 394 KSEVTDEVRDALLQLLD 410
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
501-728 |
1.94e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.52 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 501 EKSALQS---QSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLstvEDLKAEivAASESRKELElkheaeitnyKI 577
Cdd:PRK11281 57 EDKLVQQdleQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAEL---EALKDD--NDEETRETLS----------TL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 578 KLEMLEKEKNAVLDRMAESQEA------ELERLRTQLlfshEEELSKLKEDLEvehRIN-IEKLKDNLGIHYKQQIDGLQ 650
Cdd:PRK11281 122 SLRQLESRLAQTLDQLQNAQNDlaeynsQLVSLQTQP----ERAQAALYANSQ---RLQqIRNLLKGGKVGGKALRPSQR 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 651 NEMNRKMESMqcetdNLITQQNQLILE-NSKLRDLqeclVNSKSEEMNLQINELQKEIEILkQE---EKEKGTLEQEVQE 726
Cdd:PRK11281 195 VLLQAEQALL-----NAQNDLQRKSLEgNTQLQDL----LQKQRDYLTARIQRLEHQLQLL-QEainSKRLTLSEKTVQE 264
|
..
gi 1039770153 727 LQ 728
Cdd:PRK11281 265 AQ 266
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
2983-3146 |
2.15e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2983 LLAEIEDLRAQINGGKMTLEREQGTEKSSQELLDCSMQQKQSLEMQLELSSLRDRAAELQEQ---LSSEKMVVAELKSEL 3059
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAElerLDASSDDLAALEEQL 694
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3060 AQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSDTL-AREQKNSLELQWALEKEKARSGhHEGREKEELEDLKF 3138
Cdd:COG4913 695 EELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeAAEDLARLELRALLEERFAAAL-GDAVERELRENLEE 773
|
....*...
gi 1039770153 3139 SLEDQKRR 3146
Cdd:COG4913 774 RIDALRAR 781
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
476-624 |
2.18e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 2.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 476 ELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTV------ED 549
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVrnnkeyEA 93
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 550 LKAEIVAASESRKELelkhEAEITNYKIKLEMLEKEKNAVLDRMAEsQEAELERLRTQLlfshEEELSKLKEDLE 624
Cdd:COG1579 94 LQKEIESLKRRISDL----EDEILELMERIEELEEELAELEAELAE-LEAELEEKKAEL----DEELAELEAELE 159
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
127-353 |
2.22e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 2.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 127 LDDSSSEQGAQSSQTcLQMVEKELAEKQHDIEELTQELEEMRASFG--------TEGLKQLQEFEAAIKQRDGIITQLTA 198
Cdd:COG3206 162 LEQNLELRREEARKA-LEFLEEQLPELRKELEEAEAALEEFRQKNGlvdlseeaKLLLQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 199 NLQQARREKDDTMVEFLELTEQS--QKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIftqqqqlqdyqkkeEDLQAQ 276
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQI--------------AALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039770153 277 ISFLQEKLRAfEMEKDRKIENLNAKEIQEKQALIDELNTRVVEEEKKTVELKNKVTTADELLgglhEQLTQRNQEIQ 353
Cdd:COG3206 307 LQQEAQRILA-SLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELY----ESLLQRLEEAR 378
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
593-771 |
2.43e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 593 MAESQEA--ELERLRTQLlFSHEEELSKLKEDLEvEHRINIEKLKDNLgIHYKQQIDGLQNEMNRKmesmqcetdnlitq 670
Cdd:COG1579 2 MPEDLRAllDLQELDSEL-DRLEHRLKELPAELA-ELEDELAALEARL-EAAKTELEDLEKEIKRL-------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 671 QNQLILENSKLRDLQECLVNSKSEEmnlQINELQKEIEILKqeeKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQEKCA 750
Cdd:COG1579 65 ELEIEEVEARIKKYEEQLGNVRNNK---EYEALQKEIESLK---RRISDLEDEILELMERIEELEEELAELEAELAELEA 138
|
170 180
....*....|....*....|.
gi 1039770153 751 QLDAENNILKEEKRVLEDKLK 771
Cdd:COG1579 139 ELEEKKAELDEELAELEAELE 159
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
120-607 |
2.46e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 2.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 120 LREEEFSLDDSSSEQGAQssqtcLQMVEKELAEKQHDIEELTQE---LEEMRASFGTEGLKQLQEFEAAIKQRDGIITQL 196
Cdd:pfam15921 333 LREAKRMYEDKIEELEKQ-----LVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRD 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 197 TAN---LQQARREKDDTMVEF--LELTEQSQKLQIQFQHLQANETLQ--NSTLSRTA--TDLLQAKRQIFTQQQQLQDYQ 267
Cdd:pfam15921 408 TGNsitIDHLRRELDDRNMEVqrLEALLKAMKSECQGQMERQMAAIQgkNESLEKVSslTAQLESTKEMLRKVVEELTAK 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 268 K-----KEEDLQAQISFLQEKLRAFE-----MEKDRKIENLNAKEIQE----------KQALIDELNTRVVEEEKKTVEL 327
Cdd:pfam15921 488 KmtlesSERTVSDLTASLQEKERAIEatnaeITKLRSRVDLKLQELQHlknegdhlrnVQTECEALKLQMAEKDKVIEIL 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 328 KNKVTTADELLG-------GLHEQLTQRNQEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQkrnlkdswLETSAVRR 400
Cdd:pfam15921 568 RQQIENMTQLVGqhgrtagAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE--------LEKVKLVN 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 401 VEQETQRKLSHLQAELDEMYGKqiVQMKQELINQHMSQIEELKSQHKREMENtlksdtnaaiskeqvnlMNAAINELNVR 480
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNE--VKTSRNELNSLSEDYEVLKRNFRNKSEE-----------------METTTNKLKMQ 700
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 481 LQETHAQKEELKGELGVVLG--------------EKSALQSQSNDLLEEVRFLREQV---QKARQTIAEQENRLSEarkS 543
Cdd:pfam15921 701 LKSAQSELEQTRNTLKSMEGsdghamkvamgmqkQITAKRGQIDALQSKIQFLEEAMtnaNKEKHFLKEEKNKLSQ---E 777
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 544 LSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDrMAESQEAELERLRTQ 607
Cdd:pfam15921 778 LSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQD-IIQRQEQESVRLKLQ 840
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
680-747 |
2.48e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 43.52 E-value: 2.48e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039770153 680 KLRDLQeclvnSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQLKEKEDDLQE 747
Cdd:PRK05431 36 ERRELQ-----TELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
2100-2358 |
2.63e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 43.76 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2100 QERNEEIEKLECRVRELEQAL--LASAEPFPKVEDQKRSGAVEADPElslEVQLQVERDAtDRKQKEITNLEEQLEQFRE 2177
Cdd:PRK05771 39 ELSNERLRKLRSLLTKLSEALdkLRSYLPKLNPLREEKKKVSVKSLE---ELIKDVEEEL-EKIEKEIKELEEEISELEN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2178 ELENKNDEVQEL--------LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKESDSVSTrdqpmlfgKFAQLIQE 2249
Cdd:PRK05771 115 EIKELEQEIERLepwgnfdlDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYISTDKGY--------VYVVVVVL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2250 KEIEIDRLNE----QFIKLQQQLKLTTDnKVIEEQKEQIQDLETQIERLmseREHEKKQREEEVEQLTGVVEKLQQEVVS 2325
Cdd:PRK05771 187 KELSDEVEEElkklGFERLELEEEGTPS-ELIREIKEELEEIEKERESL---LEELKELAKKYLEELLALYEYLEIELER 262
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1039770153 2326 TEQQREGART---------LPEDE-ESFKHQLDKVTAEKLVLE 2358
Cdd:PRK05771 263 AEALSKFLKTdktfaiegwVPEDRvKKLKELIDKATGGSAYVE 305
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
146-813 |
2.71e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 146 VEKELAEKQHDIEELTQELEEMRASFGTEGLkQLQEFEAAIKQRDGIITQLTANLQQARREKDD----TMVEFLELTEQS 221
Cdd:TIGR00606 324 CQRELEKLNKERRLLNQEKTELLVEQGRLQL-QADRHQEHIRARDSLIQSLATRLELDGFERGPfserQIKNFHTLVIER 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 222 QKLQIQFQHLQANETLQNSTLSRTATDLLQAKRQIF--TQQQQLQDYQKKEEDLQAQISFLQ-------------EKLRA 286
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLgrTIELKKEILEKKQEELKFVIKELQqlegssdrileldQELRK 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 287 FE-----MEKDRKIENLNAKEIQEKQALIDELNTRVVEEEK------------KTVELKNKVTTADEllgGLHEQLTQRN 349
Cdd:TIGR00606 483 AErelskAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEmeqlnhhtttrtQMEMLTKDKMDKDE---QIRKIKSRHS 559
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 350 QEIQSLKLELGNSQQNERKCSEEIKELMRTVEELQKRNLKDSWLETSA--VRRVEQETQRKLSHLQAELDEMYGKQIVQM 427
Cdd:TIGR00606 560 DELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKnhINNELESKEEQLSSYEDKLFDVCGSQDEES 639
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 428 KQELINQHMSQIEELKSQ-------HKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQ-----------ETHAQKE 489
Cdd:TIGR00606 640 DLERLKEEIEKSSKQRAMlagatavYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQsklrlapdklkSTESELK 719
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 490 ELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEARKSLSTvedlkaeIVAASESRKELelkhE 569
Cdd:TIGR00606 720 KKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGT-------IMPEEESAKVC----L 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 570 AEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRTQllfsheeeLSKLKEDLEVEHRINIEKLKDN--LGIHYKQQID 647
Cdd:TIGR00606 789 TDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQ--------VNQEKQEKQHELDTVVSKIELNrkLIQDQQEQIQ 860
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 648 GLQNEMNR-KMESMQCETDNLITQQ--NQLILENSKLRDLQECLVNSKSEEMNLQI---NELQKEIEILKQEEKEKGTLE 721
Cdd:TIGR00606 861 HLKSKTNElKSEKLQIGTNLQRRQQfeEQLVELSTEVQSLIREIKDAKEQDSPLETfleKDQQEKEELISSKETSNKKAQ 940
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 722 QEVQELQLKTEQLEKQLKEKEDDLQEKCAQ--LDAENNILKEEKRvLEDKLKMYSPSEQEERSIAVDPSTSKSADsRWQK 799
Cdd:TIGR00606 941 DKVNDIKEKVKNIHGYMKDIENKIQDGKDDylKQKETELNTVNAQ-LEECEKHQEKINEDMRLMRQDIDTQKIQE-RWLQ 1018
|
730
....*....|....
gi 1039770153 800 EVAMLRKETEDLQQ 813
Cdd:TIGR00606 1019 DNLTLRKRENELKE 1032
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
2092-2207 |
2.71e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 43.61 E-value: 2.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2092 KEQLQRDIQERNEEIEKLECRVRELEQALlasaepfpkvedqkrsgaveadpelslevqlqverdatDRKQKEITNLEEQ 2171
Cdd:PRK12704 70 RNEFEKELRERRNELQKLEKRLLQKEENL--------------------------------------DRKLELLEKREEE 111
|
90 100 110
....*....|....*....|....*....|....*.
gi 1039770153 2172 LEQFREELENKNDEVQELLMQLEIQRKESTTRLQEL 2207
Cdd:PRK12704 112 LEKKEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
575-962 |
3.30e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 43.50 E-value: 3.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 575 YKIKLEMLEKEKNAVLDRMaesqEAELERLRTQLLFSH---EEEL---SKLKEDLevehrinIEKLKDNLGIHYKQQIDG 648
Cdd:PTZ00108 986 YLVRLDLYKKRKEYLLGKL----ERELARLSNKVRFIKhviNGELvitNAKKKDL-------VKELKKLGYVRFKDIIKK 1054
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 649 lqNEMNRKMESMQCETDNLITQQNQLILENSKLRDLQECL-------VNSKSEEMNLQINELQKEIEILKQEEKEKGTLE 721
Cdd:PTZ00108 1055 --KSEKITAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLsmpiwslTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLE 1132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 722 qevqELQLKTEQLEKQLKEKEDDLQE----KCAQLDAENNILKEEKRVLEDKLKMYSPSEQEERSIAVDPSTSKSADSRW 797
Cdd:PTZ00108 1133 ----DLDKFEEALEEQEEVEEKEIAKeqrlKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRK 1208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 798 QKEVAMLRKETEDLQQQclYLNEEIEKQRNTFAFAEKNFEVNYQELQREYTCLLKIRDDLEATQTKQALEYESKLRAlee 877
Cdd:PTZ00108 1209 LDDKPDNKKSNSSGSDQ--EDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQY--- 1283
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 878 elLSKRGNPAAPKGKSSGIFPSETleIGEVVEKDTTELMEKLEVTKREKLELSEKVSgLSEQLKQthCTINSLSAEVRAL 957
Cdd:PTZ00108 1284 --SPPPPSKRPDGESNGGSKPSSP--TKKKVKKRLEGSLAALKKKKKSEKKTARKKK-SKTRVKQ--ASASQSSRLLRRP 1356
|
....*
gi 1039770153 958 KQEKE 962
Cdd:PTZ00108 1357 RKKKS 1361
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
538-820 |
3.91e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 3.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 538 SEARKSLSTVEDLKAEIVAASEsRKELELKHEAEITNYKIKLEMLEKeknavldrmAESQEAELERLRTQLlfshEEELS 617
Cdd:PRK11281 29 AASNGDLPTEADVQAQLDALNK-QKLLEAEDKLVQQDLEQTLALLDK---------IDRQKEETEQLKQQL----AQAPA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 618 KLKEDLEvehriNIEKLKDNLGIHYKQQIDGLQNemnRKMESMQCET-DNLITQQNQLILENSKLRDLQ--------ECL 688
Cdd:PRK11281 95 KLRQAQA-----ELEALKDDNDEETRETLSTLSL---RQLESRLAQTlDQLQNAQNDLAEYNSQLVSLQtqperaqaALY 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 689 VNSK-SEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLEKQ--------LKEKEDDLQEKCAQLDAENNIL 759
Cdd:PRK11281 167 ANSQrLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEgntqlqdlLQKQRDYLTARIQRLEHQLQLL 246
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 760 KE---EKRVLEdklkmyspSEQE-ERSIAVDPSTSKSADSRWQKEVAMLRKETEDLQQQCLYLNE 820
Cdd:PRK11281 247 QEainSKRLTL--------SEKTvQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNT 303
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3020-3249 |
4.10e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 4.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3020 QQKQSLEMQLELSSLRDRAAELQEQLSSEKMVVAELKSELAQAKLELGTTLKAQHKRLKELEAFRSEVKEKTDEIHFLSD 3099
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3100 TLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNE---SQQKIESQKMLHD 3176
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAElaaLRAELEAERAELE 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039770153 3177 AQLSEEQGRNLGLQALLESEQVRIQEMKSTLDKERELYAQLQSREDGgqpppalpSEDLLKELQKQLEEKHSR 3249
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEE--------LEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
3162-3335 |
4.22e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3162 NESQQKIESQKMLHDAQLSEEQGrNLGLQALLESEQvRIQEMKSTLDKERELYAQLQSR-EDGGQPPPALPSEDLLKELQ 3240
Cdd:COG3206 192 EEAEAALEEFRQKNGLVDLSEEA-KLLLQQLSELES-QLAEARAELAEAEARLAALRAQlGSGPDALPELLQSPVIQQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3241 KQLEEKHSRIVELLSeteKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQVYKL 3320
Cdd:COG3206 270 AQLAELEAELAELSA---RYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
170
....*....|....*
gi 1039770153 3321 DLEGKRLQGLMQEFQ 3335
Cdd:COG3206 347 PELEAELRRLEREVE 361
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3130-3316 |
4.25e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 4.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3130 KEELEDLKFSLEDQKRRNTQLNLLLEQQKQLLNESQQKIESQKmlhdAQLSEEQGRNLGLQALLESEQVRIQEMKSTLDK 3209
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----RRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3210 ERELYAQL--QSREDGGQPPPA--LPSEDL-----------------------LKELQKQLEEKHSRIVELLSETEKYKL 3262
Cdd:COG4942 102 QKEELAELlrALYRLGRQPPLAllLSPEDFldavrrlqylkylaparreqaeeLRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1039770153 3263 DSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQQ 3316
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1523-1708 |
4.33e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 4.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1523 VRKSMHDEVLVSSMDTSRQLILNEQLEDMRQELVRQYEEHQQATEMLRQAHMQQMERQREDQEQLQEEIKRLNEQLA--- 1599
Cdd:pfam17380 394 VRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerk 473
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1600 ------QKSSIDTEHVVSERERVLLEELEALKQLPLA---GRKELCCELRHSSTQTQDGHDDQEVEEQTLKDKTLERSPE 1670
Cdd:pfam17380 474 rkklelEKEKRDRKRAEEQRRKILEKELEERKQAMIEeerKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRR 553
|
170 180 190
....*....|....*....|....*....|....*...
gi 1039770153 1671 DALLDRNLSNERYALkKANNRLLKILLEVVKTTSAAEE 1708
Cdd:pfam17380 554 IQEQMRKATEERSRL-EAMEREREMMRQIVESEKARAE 590
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1992-2210 |
4.48e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 4.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1992 EQVSRFIEleqeknAELTDLRQQSQALEKQLEKMRKflDEQAIDREHERDVFQQEIQKLEHQLKAVpRIQpVSEHQAReV 2071
Cdd:COG3206 174 RKALEFLE------EQLPELRKELEEAEAALEEFRQ--KNGLVDLSEEAKLLLQQLSELESQLAEA-RAE-LAEAEAR-L 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2072 EQLTNHLKEKTDRCSELLLSKEqlqrdIQERNEEIEKLEcrvRELEQALLASAEPFPKVEDQKRSGAvEADPELSLEVQ- 2150
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPV-----IQQLRAQLAELE---AELAELSARYTPNHPDVIALRAQIA-ALRAQLQQEAQr 313
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039770153 2151 ----LQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQELLMQLEIQRKESTT---RLQELQQE 2210
Cdd:COG3206 314 ilasLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESllqRLEEARLA 380
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
2165-2322 |
4.54e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 42.31 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2165 ITNLEEQLEQFREELENKNDEVQEL---LMQLEIQRKESTTRLQELQQENRLFKDEIEKLGFAMKEsdsvstrdqpmlfg 2241
Cdd:smart00787 146 KEGLDENLEGLKEDYKLLMKELELLnsiKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKE-------------- 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2242 KFAQLIQEKEIEIDRLNEQfiklqqQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQ 2321
Cdd:smart00787 212 KLKKLLQEIMIKVKKLEEL------EEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285
|
.
gi 1039770153 2322 E 2322
Cdd:smart00787 286 L 286
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
656-762 |
4.85e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 656 KMESMQCETDNLITQQNQLILENSKLRDLQECLVNSKSEEMNLQINELQKEIEILKQEEKEKGTLEQEVQELQLKTEQLE 735
Cdd:COG0542 405 EIDSKPEELDELERRLEQLEIEKEALKKEQDEASFERLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRY 484
|
90 100
....*....|....*....|....*..
gi 1039770153 736 KQLKEKEDDLQEKCAQLDAENNILKEE 762
Cdd:COG0542 485 GKIPELEKELAELEEELAELAPLLREE 511
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
1991-2367 |
5.05e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.82 E-value: 5.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1991 EEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKlEHQLKAVPRIQPVSEHQARE 2070
Cdd:pfam09731 44 EEVVLYALGEDPPLAPKPKTFRPLQPSVVSAVTGESKEPKEEKKQVKIPRQSGVSSEVA-EEEKEATKDAAEAKAQLPKS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2071 VEQLTNHLKEKTdrcSELLLSKEQLQRDIQE-RNEEIEKLECRVRELEQALLASAEPFPKVEDQKRSGAvEADPELSLEV 2149
Cdd:pfam09731 123 EQEKEKALEEVL---KEAISKAESATAVAKEaKDDAIQAVKAHTDSLKEASDTAEISREKATDSALQKA-EALAEKLKEV 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2150 QLQVERDATDRKQKEITNLEEQLEQFREELENKNDEVQEllmqlEIQRKESTTRLQELQQENR-LFKDEIEKLgfaMKES 2228
Cdd:pfam09731 199 INLAKQSEEEAAPPLLDAAPETPPKLPEHLDNVEEKVEK-----AQSLAKLVDQYKELVASERiVFQQELVSI---FPDI 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2229 DSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKLTTDnKVIEEQKEQIQDL-ETQIERLMSEREHEKKQREE 2307
Cdd:pfam09731 271 IPVLKEDNLLSNDDLNSLIAHAHREIDQLSKKLAELKKREEKHIE-RALEKQKEELDKLaEELSARLEEVRAADEAQLRL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2308 EVE--------------------QLTGVVEKLQQEVVSTEQ--QREGAR----TLPEDEESFKHQLDKVTAEKLVLEQQV 2361
Cdd:pfam09731 350 EFErereeiresyeeklrtelerQAEAHEEHLKDVLVEQEIelQREFLQdikeKVEEERAGRLLKLNELLANLKGLEKAT 429
|
....*.
gi 1039770153 2362 ETTNQV 2367
Cdd:pfam09731 430 SSHSEV 435
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
403-631 |
5.30e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 5.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 403 QETQRKLSHLQAELDEMyGKQIVQMKQEL--INQHMSQIEELKSQHKReMENTLKSDTNAA-----IS-----KEQVNLM 470
Cdd:COG4913 606 FDNRAKLAALEAELAEL-EEELAEAEERLeaLEAELDALQERREALQR-LAEYSWDEIDVAsaereIAeleaeLERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 471 NAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQ-----ENRLSEARKSLS 545
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLElrallEERFAAALGDAV 763
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 546 T---VEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQeAELERLRTQLLFSHEEELSKLKED 622
Cdd:COG4913 764 ErelRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEYL-ALLDRLEEDGLPEYEERFKELLNE 842
|
....*....
gi 1039770153 623 LEVEHRINI 631
Cdd:COG4913 843 NSIEFVADL 851
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
370-577 |
5.31e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 370 SEEIKELMRTVEELQKR--NLKDSWLETSAVRRVEQETQRkLSHLQAELDEmygkqiVQMKQELINQHMSQIEELKSQHK 447
Cdd:COG3206 181 EEQLPELRKELEEAEAAleEFRQKNGLVDLSEEAKLLLQQ-LSELESQLAE------ARAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 448 REMENTLKSDTNAAIsKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGE-KSALQSQSNDLLEEVRFLREQVQKA 526
Cdd:COG3206 254 DALPELLQSPVIQQL-RAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQlQQEAQRILASLEAELEALQAREASL 332
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039770153 527 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASE-------SRKELELKHEAEITNYKI 577
Cdd:COG3206 333 QAQLAQLEARLAELPELEAELRRLEREVEVARElyesllqRLEEARLAEALTVGNVRV 390
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
450-786 |
6.01e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 6.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 450 MENTLKSdtnaaiSKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKSALQSQSNDL---LEEVRFLREQVQKA 526
Cdd:PRK01156 188 LEEKLKS------SNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELsslEDMKNRYESEIKTA 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 527 RQTIAEQENRLSEARKSLSTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLDRMAESQEAELERLRT 606
Cdd:PRK01156 262 ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDY 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 607 QLLFSHEEELSKLKEDLEVEHR------INIEKLKDNLGiHYKQQIDGLQNEMNRKMESMQCETDNLITQQNQLileNSK 680
Cdd:PRK01156 342 IKKKSRYDDLNNQILELEGYEMdynsylKSIESLKKKIE-EYSKNIERMSAFISEILKIQEIDPDAIKKELNEI---NVK 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 681 LRDlqeclVNSKSEEMNLQINEL-QKEIEILKQEEKEKGTLEQEVQELQL---KTEQLEKQLKEKEDDLQEKCAQLDAEN 756
Cdd:PRK01156 418 LQD-----ISSKVSSLNQRIRALrENLDELSRNMEMLNGQSVCPVCGTTLgeeKSNHIINHYNEKKSRLEEKIREIEIEV 492
|
330 340 350
....*....|....*....|....*....|
gi 1039770153 757 NILKEEKRVLEdKLKMYSPSEQEERSIAVD 786
Cdd:PRK01156 493 KDIDEKIVDLK-KRKEYLESEEINKSINEY 521
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
3082-3315 |
6.24e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.82 E-value: 6.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3082 AFRSEVKEKTDEIHflsdtLAREQKNSLELQWALEKEKARSGHHEGREKEELEDLKFSLEDQKRRntqlnllleqqkqlL 3161
Cdd:PTZ00121 1271 AIKAEEARKADELK-----KAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK--------------A 1331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3162 NESQQKIESQKMLHDAQLSEEQGRNLGLQAllESEQVRIQEMKSTLDKERELYAQLQSREdggqpppalpsEDLLKELQK 3241
Cdd:PTZ00121 1332 DAAKKKAEEAKKAAEAAKAEAEAAADEAEA--AEEKAEAAEKKKEEAKKKADAAKKKAEE-----------KKKADEAKK 1398
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039770153 3242 QLEEKHSRIVELL-SETEKYKLDSLqtRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSKVEELQRQLQEKRQ 3315
Cdd:PTZ00121 1399 KAEEDKKKADELKkAAAAKKKADEA--KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
2162-2339 |
6.72e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2162 QKEITNLEEQLEQFREELENKNDEVQELlmQLEIQRKESttrlqELQQENRLFKDEIEKLGFAM--KESDSVstrdqpml 2239
Cdd:COG1579 30 PAELAELEDELAALEARLEAAKTELEDL--EKEIKRLEL-----EIEEVEARIKKYEEQLGNVRnnKEYEAL-------- 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2240 fgkfaqliqEKEIEIdrlneqfiklqQQLKLTTDNKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKL 2319
Cdd:COG1579 95 ---------QKEIES-----------LKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170 180
....*....|....*....|.
gi 1039770153 2320 QQEVVSTEQQREGAR-TLPED 2339
Cdd:COG1579 155 EAELEELEAEREELAaKIPPE 175
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1955-2107 |
7.24e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 7.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1955 LQETEKLMKEKLEVQCQAEKVRGDLQKQVKALeIDVEEQVSRFIELEQEKNAELTDLRQQSQALEKQLEKMRKFLDEQAi 2034
Cdd:PRK12704 60 LEAKEEIHKLRNEFEKELRERRNELQKLEKRL-LQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI- 137
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039770153 2035 dreherdvfQQEIQKLEhqlkavpRIQPVSEHQARevEQLTNHLKEKtdrcselllSKEQLQRDIQERNEEIE 2107
Cdd:PRK12704 138 ---------EEQLQELE-------RISGLTAEEAK--EILLEKVEEE---------ARHEAAVLIKEIEEEAK 183
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1819-2487 |
7.30e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 7.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1819 EAISETNTQLEHAKVTQTELMRESFRQKQEATESLHCLEELRERLQEESRAREQLAEELNKAESVIDGYSDEktlferqi 1898
Cdd:TIGR00606 230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDE-------- 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1899 qEKTDIIEHLEQEVLCMNNRLQELESDQRRVEEERQLLCRQREAMRAEAGPVEQQFLQETEKLMKEKLEVQCQAEKVRGD 1978
Cdd:TIGR00606 302 -QLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 1979 LQKQvkalEIDVEEQVSRFIELEQEK--------NAELTDLRQQSQALEKQLEKMRKFLDEQAIDREHERDVFQQEIQKL 2050
Cdd:TIGR00606 381 GFER----GPFSERQIKNFHTLVIERqedeaktaAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2051 EHQLKAVPRIQPVSEHQAREVEQLTNHLKE----------KTDRCSELLLSKEQL-----QRDIQERNEEIEKLECRVRE 2115
Cdd:TIGR00606 457 KFVIKELQQLEGSSDRILELDQELRKAERElskaeknsltETLKKEVKSLQNEKAdldrkLRKLDQEMEQLNHHTTTRTQ 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2116 LEQALLASAEPFPKVEDQKRSGAVEADPELSLEVQLQVERDATDRKQKEITNLEEQLEQFREELENKNDevqellMQLEI 2195
Cdd:TIGR00606 537 MEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQ------NKNHI 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2196 QRKESTTRLQELQQENRLF-----KDEIEKLGfAMKESDSVSTRDQPMLFGKFAQLIQEKEIEIDRLNEQFIKLQQQLKL 2270
Cdd:TIGR00606 611 NNELESKEEQLSSYEDKLFdvcgsQDEESDLE-RLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQT 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2271 TTD-NKVIEEQKEQIQDLETQIERLMSEREHEKKQREEEVEQLTGVVEKLQQEVVSTEQQREGARTLPEDEESFKHQLDK 2349
Cdd:TIGR00606 690 EAElQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEE 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 2350 VtaeklvlEQQVETTNQVMTHMNNVLKEINFkMDQITQSLCNLNKECAsnEELPSLPKESVHMTVHELGSDnLQPEDAPA 2429
Cdd:TIGR00606 770 Q-------ETLLGTIMPEEESAKVCLTDVTI-MERFQMELKDVERKIA--QQAAKLQGSDLDRTVQQVNQE-KQEKQHEL 838
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039770153 2430 QDVTKPLEKQTSLTRLQKSPEA---SRTQEIESLASSVGAKDVELTQCREQTETIQEQAQS 2487
Cdd:TIGR00606 839 DTVVSKIELNRKLIQDQQEQIQhlkSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
432-607 |
8.19e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 432 INQHMSQIEELKSQHKREMENTLKSDTNAAISKEQVNLMNAAINELNVRLQETHAQKEELKGELGVVLGEKsalqsQSND 511
Cdd:COG1579 19 LDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNK-----EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 512 LLEEVRFLREQVQKARQTIAEQENRLSEARKslsTVEDLKAEIVAASESRKELELKHEAEITNYKIKLEMLEKEKNAVLD 591
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEE---ELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAA 170
|
170
....*....|....*.
gi 1039770153 592 RMAESQEAELERLRTQ 607
Cdd:COG1579 171 KIPPELLALYERIRKR 186
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
143-572 |
8.77e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 8.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 143 LQMVEKELAEKQhdIEELTQELEEMRASfGTEGLKQLQEFEAAIKQRDGIITQLTANLQQARREKDDTMVEFLELTEQSQ 222
Cdd:PRK03918 374 LERLKKRLTGLT--PEKLEKELEELEKA-KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR 450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 223 KlqiqfqHLQANETLQNSTLSRTATDLLQAKRQIFTQQQQLQDYQKKEEDLQAQISFLqEKLRAFEmekdRKIENLNAKE 302
Cdd:PRK03918 451 K------ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELA-EQLKELE----EKLKKYNLEE 519
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 303 IQEKQALIDELNTRVVEEEKKTVELKNKVttadELLGGLHEQLTQRNQEIQSLKLELGN-SQQNERKCSEEIKELMRTVE 381
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAElLKELEELGFESVEELEERLK 595
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 382 ELQKrnLKDSWLETSAVRRVEQETQRKLSHLQAELDEmygkqivqmKQELINQHMSQIEELKSQhkrementlksdtnaa 461
Cdd:PRK03918 596 ELEP--FYNEYLELKDAEKELEREEKELKKLEEELDK---------AFEELAETEKRLEELRKE---------------- 648
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 462 iskeqvnlmnaaINELNVRL-QETHAQKEELKGELGVVLGEKSALQSQSNDLLEEVRFLREQVQKARQTIAEQENRLSEA 540
Cdd:PRK03918 649 ------------LEELEKKYsEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKL 716
|
410 420 430
....*....|....*....|....*....|..
gi 1039770153 541 RKSLSTVEDLKAEIVAASESRKELELKHEAEI 572
Cdd:PRK03918 717 EKALERVEELREKVKKYKALLKERALSKVGEI 748
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
3226-3320 |
9.98e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039770153 3226 PPPALPSEDLLKELQKQLEEKHSRIVEL---LSETEKYKLDSLQTRQQMEKDRQVHQKTLQTEQEANTQGQKKMQELQSK 3302
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELekeLAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90
....*....|....*...
gi 1039770153 3303 VEELQRQLQEKRQQVYKL 3320
Cdd:COG4942 92 IAELRAELEAQKEELAEL 109
|
|
| |
