|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
483-1193 |
4.14e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 4.14e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 483 EQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAaqqdlqskfvakenevqslhsKLTDTLVSKQQLEQRLMQLMESEQK 562
Cdd:TIGR02168 192 EDILNELERQLKSLERQAEKAERYKELKAELREL---------------------ELALLVLRLEELREELEELQEELKE 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 563 RASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD 642
Cdd:TIGR02168 251 AEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANLERQLEELEAQLEE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 643 VQNMNFLLKAEVQKLQA----LANEQAATAHEVEKMQKSIHVKEDKIRLLEE----------QLQHEVASKMEELKILSE 708
Cdd:TIGR02168 328 LESKLDELAEELAELEEkleeLKEELESLEAELEELEAELEELESRLEELEEqletlrskvaQLELQIASLNNEIERLEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 709 QNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEEL---LETGLIQVATREEELSAIRTENSTLTREVQEL 785
Cdd:TIGR02168 408 RLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELqeeLERLEEALEELREELEEAEQALDAAERELAQL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 786 KAK----QSDQVSFVSLIEDLKRVIHEKDGqiKSVEELLEVELLKVANK-----------------EKTVQALKQEIEVL 844
Cdd:TIGR02168 488 QARldslERLQENLEGFSEGVKALLKNQSG--LSGILGVLSELISVDEGyeaaieaalggrlqavvVENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 845 KEE------------IGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ----------------VNSMKAALEDRdRDLRGR 896
Cdd:TIGR02168 566 KQNelgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllggvlvVDDLDNALELA-KKLRPG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 897 GTC---------AQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLshqkhqqasf 967
Cdd:TIGR02168 645 YRIvtldgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEEL---------- 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 968 psqEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLfptvsvpsNLNYSEWLRGFEK 1047
Cdd:TIGR02168 715 ---EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL--------EEAEEELAEAEAE 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1048 KAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRM---IKQ 1124
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLaaeIEE 863
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039745670 1125 LRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQ 1193
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
483-1220 |
1.05e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.72 E-value: 1.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 483 EQAA--TQLKVQLQEAERRWEEVQSYI---------RKRTAEHEAAQQDLQSKFVAKENEVQSLHskLTDTLVSKQQLEQ 551
Cdd:TIGR02168 162 EEAAgiSKYKERRKETERKLERTRENLdrledilneLERQLKSLERQAEKAERYKELKAELRELE--LALLVLRLEELRE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 552 RLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQD 631
Cdd:TIGR02168 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE---LYALANEISRLEQQKQILRERLANLER 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 632 HLASKEEELKDVQNMNFLLKAEVQKLQA----LANEQAATAHEVEKMQKSIHVKEDKIRLLEE----------QLQHEVA 697
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEkleeLKEELESLEAELEELEAELEELESRLEELEEqletlrskvaQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 698 SKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEEL---LETGLIQVATREEELSAIRTE 774
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELqeeLERLEEALEELREELEEAEQA 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 775 NSTLTREVQELKAK----QSDQVSFVSLIEDLKRVIHEKDGqiKSVEELLEVELLKVANK-----------------EKT 833
Cdd:TIGR02168 477 LDAAERELAQLQARldslERLQENLEGFSEGVKALLKNQSG--LSGILGVLSELISVDEGyeaaieaalggrlqavvVEN 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 834 VQALKQEIEVLKEE------------IGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ----------------VNSMKAA 885
Cdd:TIGR02168 555 LNAAKKAIAFLKQNelgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDpklrkalsyllggvlvVDDLDNA 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 886 LEDRdRDLRGRGTC---------AQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQ 956
Cdd:TIGR02168 635 LELA-KKLRPGYRIvtldgdlvrPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 957 LshqkhqqasfpsqEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLfptvsvpsNL 1036
Cdd:TIGR02168 714 L-------------EQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL--------EE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1037 NYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLE-----------------CEKYKSVLAETEGILQK 1099
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaanlrerleslerriaaTERRLEDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1100 LQRSVEQEESKWKIKADESQRMIKQLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELN 1179
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLE 932
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1039745670 1180 LLKTQLNETHSKLQNE--------QTERKKVADDLHKAQQSLNSIHSKI 1220
Cdd:TIGR02168 933 GLEVRIDNLQERLSEEysltleeaEALENKIEDDEEEARRRLKRLENKI 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
449-994 |
1.33e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 449 AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 528
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 529 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEEL 608
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 609 HKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLL 688
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 689 EEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEkLRTVEELLETgLIQVATREEEL 768
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAV-LIGVEAAYEA-ALEAALAAALQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 769 SAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKD---GQIKSVEELLEVELLKVANKEKTVQALKQEIEVLK 845
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAlarGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 846 EEIGNAQ-LEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKR 924
Cdd:COG1196 630 ARLEAALrRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 925 IEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESL 994
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
410-957 |
1.99e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.36 E-value: 1.99e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 410 KFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSA--ELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAT 487
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLEleELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 488 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKE 567
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 568 ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNmn 647
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA-- 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 648 fLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASkmEELKILSEQNKALQSEVQKLQTAVSQQ 727
Cdd:COG1196 474 -LLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA--GAVAVLIGVEAAYEAALEAALAAALQN 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 728 PNKDVVEQMEKCIQ---------------EKDEKLRTVEELLETGLIQVAT------REEELSAIRTENSTLTREVQELK 786
Cdd:COG1196 551 IVVEDDEVAAAAIEylkaakagratflplDKIRARAALAAALARGAIGAAVdlvasdLREADARYYVLGDTLLGRTLVAA 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 787 AKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQ 866
Cdd:COG1196 631 RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELA 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 867 ELQNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMS------ 940
Cdd:COG1196 711 EAEEERLEEELEEEALEEQLEAEREELLEE----LLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGpvnlla 786
|
570
....*....|....*...
gi 1039745670 941 -ELLKEVQEENKFLKCQL 957
Cdd:COG1196 787 iEEYEELEERYDFLSEQR 804
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
336-1026 |
4.78e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 74.32 E-value: 4.78e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 336 QLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSvviarmKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ 415
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEEL------TAELQELEEKLEELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 416 eqmeAEIAHLKQENGILRDAVSNTTNQLESKqSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE 495
Cdd:TIGR02168 295 ----NEISRLEQQKQILRERLANLERQLEEL-EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 496 AERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEesLQIQVQ 575
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE--LQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 576 DILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQ 655
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 656 KLQALAN-----EQAATAHEVEKMQKSIHVKEDKIRLLEEQL------------------QHEVASKMEEL--------- 703
Cdd:TIGR02168 524 VLSELISvdegyEAAIEAALGGRLQAVVVENLNAAKKAIAFLkqnelgrvtflpldsikgTEIQGNDREILkniegflgv 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 704 -----KILSEQNKALQSE------VQKLQTAVSQQPNKDV---------------------VEQMEKCIQEKDEKLRTVE 751
Cdd:TIGR02168 604 akdlvKFDPKLRKALSYLlggvlvVDDLDNALELAKKLRPgyrivtldgdlvrpggvitggSAKTNSSILERRREIEELE 683
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 752 ELLETGLIQVATREEELSAIRTENSTLTREVQELKAkqsdqvsfvsLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKE 831
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRK----------ELEELSRQISALRKDLARLEAEVEQLEERIAQLS 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 832 KTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVcstpQFEEL 911
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE----RLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 912 ESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQL-SHQKHQQASFPSQEELQTVISEKEKEITDLCNE 990
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELeALLNERASLEEALALLRSELEELSEELRELESK 909
|
730 740 750
....*....|....*....|....*....|....*.
gi 1039745670 991 LESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRL 1026
Cdd:TIGR02168 910 RSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
461-1165 |
3.87e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.24 E-value: 3.87e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 461 LVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQ---QDLQSKFVAKENEVQSLHS 537
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 538 KLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDK 617
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 618 QLKQTEDSLANEQDHLASKEEELKDvqnmnfllkaEVQKLQALANEQAATAHEVEKmqKSIHVKEDKIRLLEEQLQHEVA 697
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLED----------RRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 698 SKMEELKILSEQNKALQSEVQKLQTAVSQ-QPNKDVVEQMEKCIQEKDEKLRTVEELLETG---------LIQV------ 761
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQlQARLDSLERLQENLEGFSEGVKALLKNQSGLsgilgvlseLISVdegyea 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 762 ---ATREEELSAIRTENSTLTRE-VQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKV---------- 827
Cdd:TIGR02168 538 aieAALGGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLvkfdpklrka 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 828 ------------------------------------------------ANKEKTVQALKQEIEVLKEEIgNAQLEKAHQL 859
Cdd:TIGR02168 618 lsyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKI-EELEEKIAEL 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 860 SVtsQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQfEELESVLKEKDNEIKRIEVKLKDTESDVSKM 939
Cdd:TIGR02168 697 EK--ALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV-EQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 940 SELLKEVQEENKFLKCQLSHQKHQQASFPSQ-EELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELE 1018
Cdd:TIGR02168 774 EEELAEAEAEIEELEAQIEQLKEELKALREAlDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1019 SKDLLKRLFptvsvpsnlNYSEWLRGFEKKAKACVagtsdaEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQ 1098
Cdd:TIGR02168 854 IESLAAEIE---------ELEELIEELESELEALL------NERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039745670 1099 KLQRSVEQEESKW-KIKADESQrmikQLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLD 1165
Cdd:TIGR02168 919 ELREKLAQLELRLeGLEVRIDN----LQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
461-792 |
1.02e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.58 E-value: 1.02e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 461 LVSELNEKTGKLQQEgvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLT 540
Cdd:COG1196 194 ILGELERQLEPLERQ------AEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELE----ELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 541 DTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLK 620
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE---LAELEEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 621 QTEDSLANEQDHLASKEEELKDVQNmnfLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKM 700
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEAEE---ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 701 EELKILSEQNKALQSEVQKLQTAVSQQpnkdvveqmekciQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTR 780
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEAL-------------EEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
330
....*....|..
gi 1039745670 781 EVQELKAKQSDQ 792
Cdd:COG1196 485 ELAEAAARLLLL 496
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
650-1274 |
4.75e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 4.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 650 LKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIrlleEQLQHEVASKMEELKILSEQNKALQSEVQKLqtavsqqpn 729
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKL----EELRLEVSELEEEIEELQKELYALANEISRL--------- 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 730 kdvvEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVS-FVSLIEDLKRVIHE 808
Cdd:TIGR02168 301 ----EQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEeLEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 809 KDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLS--VTSQVQELQNLLRGKEEQVNSMKAAL 886
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKklEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 887 EDRDRDLrgrgtcaqvcstpqfEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQAS 966
Cdd:TIGR02168 457 ERLEEAL---------------EELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGI 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 967 FPSQEELQTVISEKEKEITD---------LCNELESLKNAVEHQRKKNNERRQHVEaieleskdlLKRLFPTVSVPSNLN 1037
Cdd:TIGR02168 522 LGVLSELISVDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNELGRVTFLP---------LDSIKGTEIQGNDRE 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1038 YSEWLRGFEKKAKACVagTSDAEAVKVLEHRL---------KEASEMHTLLqleceKYKSVLAETEGILQKLQRSVEQEE 1108
Cdd:TIGR02168 593 ILKNIEGFLGVAKDLV--KFDPKLRKALSYLLggvlvvddlDNALELAKKL-----RPGYRIVTLDGDLVRPGGVITGGS 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1109 SKWKIKADESQRMIKQLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNET 1188
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1189 HSKLQNEQTERKKVADDLHKAQQSLNSIHSKisLKAAGDTVVIENSDISPEMESPEK-ETMSVSLNQTVTQLQQLLQEVN 1267
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEE--LAEAEAEIEELEAQIEQLKEELKAlREALDELRAELTLLNEEAANLR 823
|
....*..
gi 1039745670 1268 QQLTKET 1274
Cdd:TIGR02168 824 ERLESLE 830
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
29-151 |
2.02e-10 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 60.14 E-value: 2.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 29 MKETLYDEVLAKQKREQKLISTKTDKKKAEKKKNKKK------EIQNGTLRESD----SEHVPRDFKLSDASPAEDEqfV 98
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTPTEKEKKKKEKKKEKKKkskkkeEKPNGKLPESEqadeSEEEPREFKTPDEAPSAAL--E 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1039745670 99 PAPLNVAETSSSVRERKKKEKKQKPSLEEQVIKESDASKIPGKKVEPVLVTKQ 151
Cdd:pfam05104 79 PEPVPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKP 131
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
311-967 |
5.13e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 5.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 311 LKEKSGVIKEALKKSNKgELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKER---SSVVIARMKDRIGTLE 387
Cdd:TIGR02168 300 LEQQKQILRERLANLER-QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAEleeLEAELEELESRLEELE 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 388 KEHNIFQNKMHASYQETQQMQMKfqqvQEQMEAEIAHLKQENGILRdavSNTTNQLESKQSAELNKLRQDCGRLVSELNE 467
Cdd:TIGR02168 379 EQLETLRSKVAQLELQIASLNNE----IERLEARLERLEDRRERLQ---QEIEELLKKLEEAELKELQAELEELEEELEE 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 468 KTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSyirkRTAEHEAAQQDLQSKFVAKENEVQSLhSKLTDTLvskq 547
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQA----RLDSLERLQENLEGFSEGVKALLKNQ-SGLSGIL---- 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 548 qleQRLMQLMESEQK-RASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSA-SVLAEELHKVIAEKDKQLKQTEDS 625
Cdd:TIGR02168 523 ---GVLSELISVDEGyEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTfLPLDSIKGTEIQGNDREILKNIEG 599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 626 LANEQDHLASKEEELKDVqnMNFLLK--AEVQKLQALANEQAATAH---------EVEKMQKSIHVKEDKIRLLEEQLQH 694
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRKA--LSYLLGgvLVVDDLDNALELAKKLRPgyrivtldgDLVRPGGVITGGSAKTNSSILERRR 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 695 EVASKMEELKILSEQNKALQSEVQKLQTAVSQQpnKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTE 774
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEEL--EEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKE 755
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 775 NSTLTREVQELKAKqsdqvsfvslIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE 854
Cdd:TIGR02168 756 LTELEAEIEELEER----------LEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 855 KAHQL----SVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLrgrgtcaqvcstpqfEELESVLKEKDNEIKRIEVKLK 930
Cdd:TIGR02168 826 LESLErriaATERRLEDLEEQIEELSEDIESLAAEIEELEELI---------------EELESELEALLNERASLEEALA 890
|
650 660 670
....*....|....*....|....*....|....*..
gi 1039745670 931 DTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASF 967
Cdd:TIGR02168 891 LLRSELEELSEELRELESKRSELRRELEELREKLAQL 927
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
611-1220 |
9.20e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 9.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 611 VIAEKDKQLKQTEDSLANEQDHLA-SKEEELKDVQnmnfLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLE 689
Cdd:COG1196 194 ILGELERQLEPLERQAEKAERYRElKEELKELEAE----LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAEL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 690 EQLQHEVASKMEELKILSEQNKALQSEVQKLQtavsqqpnKDVVEQMEKCIQEKDEKLRTVEELLETgLIQVATREEELS 769
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYELLAELARLE--------QDIARLEERRRELEERLEELEEELAEL-EEELEELEEELE 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 770 AIRTENSTLTREVQELKAKQSDQvsfVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIG 849
Cdd:COG1196 341 ELEEELEEAEEELEEAEAELAEA---EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 850 NAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVcstpQFEELESVLKEKDNEIKRIEVKL 929
Cdd:COG1196 418 RLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE----EAALLEAALAELLEELAEAAARL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 930 KDTESDVSKMSELLKEVQE-ENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNER 1008
Cdd:COG1196 494 LLLLEAEADYEGFLEGVKAaLLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGR 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1009 RqhveaiELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLEC-EKYK 1087
Cdd:COG1196 574 A------TFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLaGRLR 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1088 SVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQLRREREHLEMELEKAEMERStyvmEVRELKDLLTELQKKLDDS 1167
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEE----EERELAEAEEERLEEELEE 723
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|...
gi 1039745670 1168 YSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKI 1220
Cdd:COG1196 724 EALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
329-873 |
1.19e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 329 ELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERssvvIARMKDRIGTLEKEHnifqnkmhasyQETQQMQ 408
Cdd:COG1196 268 ELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER----RRELEERLEELEEEL-----------AELEEEL 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 409 MKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQdcgrlvselnektgkLQQEGVQKKNAEQAATQ 488
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE---------------LEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 489 LKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEE 568
Cdd:COG1196 398 LAAQLEELEEAEEA----LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 569 SLQIQVQDILEQNEALKAQIQQFHSQIA--AQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEE-LKDVQN 645
Cdd:COG1196 474 LLEAALAELLEELAEAAARLLLLLEAEAdyEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAaLQNIVV 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 646 MNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASkmeELKILSEQNKALQSEVqkLQTAVS 725
Cdd:COG1196 554 EDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVAS---DLREADARYYVLGDTL--LGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 726 QQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRV 805
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039745670 806 IHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAhqLSVTSQVQELQNLLR 873
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEP--PDLEELERELERLER 774
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
479-1021 |
1.23e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 63.24 E-value: 1.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 479 KKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSkltdtlvSKQQLEQRLMQLME 558
Cdd:PTZ00121 1236 KKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE-------AKKAEEKKKADEAK 1308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 559 SEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEE 638
Cdd:PTZ00121 1309 KKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 639 ELKDVQNmnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQ 718
Cdd:PTZ00121 1389 EKKKADE----AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 719 KLQTAVSQQPNKDVVEQMEKCiqekDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQEL-KAKQSDQVSFVS 797
Cdd:PTZ00121 1465 KAEEAKKADEAKKKAEEAKKA----DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAkKAEEAKKADEAK 1540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 798 LIEDLKRVIH-EKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELqnllrgKE 876
Cdd:PTZ00121 1541 KAEEKKKADElKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA------KK 1614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 877 EQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKflKCQ 956
Cdd:PTZ00121 1615 AEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK--AAE 1692
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039745670 957 LSHQKHQQASfpSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKD 1021
Cdd:PTZ00121 1693 ALKKEAEEAK--KAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEE 1755
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
419-1024 |
2.78e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 2.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 419 EAEIAHLKQENGILRDAVSNTTNQLeSKQSAELNKLRQDCGRLVSELNEKTGklqqegvQKKNAEQAATQLKVQLQEAER 498
Cdd:TIGR04523 67 EEKINNSNNKIKILEQQIKDLNDKL-KKNKDKINKLNSDLSKINSEIKNDKE-------QKNKLEVELNKLEKQKKENKK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 499 RWEEVQSYIRKRTAEHEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQ----------RLMQLMESEQKRASKEE 568
Cdd:TIGR04523 139 NIDKFLTEIKKKEKELE----KLNNKYNDLKKQKEELENELNLLEKEKLNIQKnidkiknkllKLELLLSNLKKKIQKNK 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 569 SLQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNF 648
Cdd:TIGR04523 215 SLESQISELKKQNNQLKDNIEKKQQEI----------NEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIK 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 649 LLKAEVQKLQA----LANEQAATAHEVEKMQksIHVKEDKIRLLEEQL---QHEVASKMEELKILSEQNKALQSEVQKLQ 721
Cdd:TIGR04523 285 ELEKQLNQLKSeisdLNNQKEQDWNKELKSE--LKNQEKKLEEIQNQIsqnNKIISQLNEQISQLKKELTNSESENSEKQ 362
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 722 TAVSQQPNkdvveQMEKCIQEKDEKLRTVEELLetglIQVATREEELSAIRTENSTLTrevQELKAKQSDQVSFVSLIED 801
Cdd:TIGR04523 363 RELEEKQN-----EIEKLKKENQSYKQEIKNLE----SQINDLESKIQNQEKLNQQKD---EQIKKLQQEKELLEKEIER 430
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 802 LKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE-KAHQLSVTSQVQELQNLlrgkeeqvN 880
Cdd:TIGR04523 431 LKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNlEQKQKELKSKEKELKKL--------N 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 881 SMKAALEDRDRDLRGRgtcaQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKmSELLKEVQEENKflkcQLSHQ 960
Cdd:TIGR04523 503 EEKKELEEKVKDLTKK----ISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKK-ENLEKEIDEKNK----EIEEL 573
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039745670 961 KHQQASF-PSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLK 1024
Cdd:TIGR04523 574 KQTQKSLkKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKS 638
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
594-1256 |
1.50e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.38 E-value: 1.50e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 594 QIAAQTSASVLAEELHKVI-AEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVE 672
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEeVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 673 KMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQ----------SEVQKLQTAVSQQPNKDVVEQMEKCIQE 742
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEkkkadeakkaEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 743 KDEKLRTVEELLETG--LIQVATREEELSAIRTENSTLTREVQELKAKQS-DQVSFVSLIEDLKRVIHEKDGQIKSVEEL 819
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAkkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAkKKADAAKKKAEEKKKADEAKKKAEEDKKK 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 820 LEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAhqlsvtSQVQELQNLLRGKEEQVNSMKAALEDRDRDlrgrgtc 899
Cdd:PTZ00121 1407 ADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEA------KKADEAKKKAEEAKKAEEAKKKAEEAKKAD------- 1473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 900 aqvcstpqfeelesVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISE 979
Cdd:PTZ00121 1474 --------------EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEA 1539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 980 KEKEITDLCNEL---ESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVAGT 1056
Cdd:PTZ00121 1540 KKAEEKKKADELkkaEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAK 1619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1057 SDAEAVKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKwKIKADESQRMIKQLRREREHLEMEL 1136
Cdd:PTZ00121 1620 IKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEED-KKKAEEAKKAEEDEKKAAEALKKEA 1698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1137 EKAEmerstyvmEVRELKDLLTELQKKlddsySEAVRQNEELNLLKTQlnethsKLQNEQTERKKVADDLHKAQQSLNSI 1216
Cdd:PTZ00121 1699 EEAK--------KAEELKKKEAEEKKK-----AEELKKAEEENKIKAE------EAKKEAEEDKKKAEEAKKDEEEKKKI 1759
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 1039745670 1217 -HSKISLKAAGDTVVIENSDISPEMESPEKETMSVSLNQTV 1256
Cdd:PTZ00121 1760 aHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKI 1800
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
461-1198 |
2.25e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 2.25e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 461 LVSELNEKTGKLQQEgvqkKNAEQAATQLKVQLQEAErrweevQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLT 540
Cdd:TIGR02169 192 IIDEKRQQLERLRRE----REKAERYQALLKEKREYE------GYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 541 DTLVSKQQLEQRLMQLmESEQKRASKEESLQIQvqdilEQNEALKAQIQQFHSQIAA-QTSASVLAEELHKVIAEKDKQL 619
Cdd:TIGR02169 262 ELEKRLEEIEQLLEEL-NKKIKDLGEEEQLRVK-----EKIGELEAEIASLERSIAEkERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 620 KQTEDSlaneqdhlaskEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASK 699
Cdd:TIGR02169 336 AEIEEL-----------EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINEL 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 700 MEELKILSEQNKALQSEV----QKLQTAVSQQPN-KDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTE 774
Cdd:TIGR02169 405 KRELDRLQEELQRLSEELadlnAAIAGIEAKINElEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 775 NSTLTREVQELKAKQS-------DQVSFVSLIEDLKRVIHEKDGQ-IKSVEELLEVELLKVANKEKTV-----QALKQEI 841
Cdd:TIGR02169 485 LSKLQRELAEAEAQARaseervrGGRAVEEVLKASIQGVHGTVAQlGSVGERYATAIEVAAGNRLNNVvveddAVAKEAI 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 842 EVLKEEignaQLEKAHQLSVTSQVQELQNLLRGKEEQVnsMKAALEDRDRDLRGRGTCAQVC-STPQFEELESV------ 914
Cdd:TIGR02169 565 ELLKRR----KAGRATFLPLNKMRDERRDLSILSEDGV--IGFAVDLVEFDPKYEPAFKYVFgDTLVVEDIEAArrlmgk 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 915 ---------LKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSH--------QKHQQASFPSQEELQTVI 977
Cdd:TIGR02169 639 yrmvtlegeLFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSlqselrriENRLDELSQELSDASRKI 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 978 SEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRLFPtvsvpsnlnysewlrgFEKKAKACVAGTS 1057
Cdd:TIGR02169 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEE----------------LEEDLHKLEEALN 782
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1058 DAEAvKVLEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESK----------WKIKADESQRMIKQLRR 1127
Cdd:TIGR02169 783 DLEA-RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEiqelqeqridLKEQIKSIEKEIENLNG 861
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039745670 1128 EREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTE 1198
Cdd:TIGR02169 862 KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEE 932
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
378-1243 |
3.00e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.59 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 378 RMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------- 447
Cdd:pfam15921 86 QVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSqedLRNQLQNTVHELEAAKclkedml 165
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 448 ---SAELNKLR----------QDCGRLVSELNEKTGKLQQEgvQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEH 514
Cdd:pfam15921 166 edsNTQIEQLRkmmlshegvlQEIRSILVDFEEASGKKIYE--HDSMSTMHFRSLGSAISKILRELDTEISYLKGRIFPV 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 515 EAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEqrLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQ 594
Cdd:pfam15921 244 EDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVE--ITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSD 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 595 IaaQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKM 674
Cdd:pfam15921 322 L--ESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQ 399
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 675 QKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQ---KLQTAVSQQPNKDV-------------VEQMEK 738
Cdd:pfam15921 400 NKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQgqmERQMAAIQGKNESLekvssltaqlestKEMLRK 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 739 CIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTR----------EVQELKAKQSDQVSFVSLIEDLKRVIHE 808
Cdd:pfam15921 480 VVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKlrsrvdlklqELQHLKNEGDHLRNVQTECEALKLQMAE 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 809 KDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE----KAHQLSVTSQVQELQ-----------NLLR 873
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLElqefKILKDKKDAKIRELEarvsdlelekvKLVN 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 874 GKEEQVNSMKAALEDRDRDLRGRGTCAQVCS--TPQFEELESVLKEKDNEIK----RIEVKLKDTESDVSKMSELLKEVQ 947
Cdd:pfam15921 640 AGSERLRAVKDIKQERDQLLNEVKTSRNELNslSEDYEVLKRNFRNKSEEMEtttnKLKMQLKSAQSELEQTRNTLKSME 719
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 948 -EENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKnavehqrKKNNERRQHVEAIELESKDLLKRL 1026
Cdd:pfam15921 720 gSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLK-------EEKNKLSQELSTVATEKNKMAGEL 792
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1027 fptvsvpsnlnysEWLRGFEKKAKACVAGTSDAeavkvLEHRLKEASEMHTLLQLEcekyksvlaETEGILQKLQRSVEQ 1106
Cdd:pfam15921 793 -------------EVLRSQERRLKEKVANMEVA-----LDKASLQFAECQDIIQRQ---------EQESVRLKLQHTLDV 845
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1107 EESK---WKIKADESQRMIKQLRREREHLEMELEKAEME-------RSTYVME--VRELKDLLTELQKKLDDSYSEAVRQ 1174
Cdd:pfam15921 846 KELQgpgYTSNSSMKPRLLQPASFTRTHSNVPSSQSTASflshhsrKTNALKEdpTRDLKQLLQELRSVINEEPTVQLSK 925
|
890 900 910 920 930 940
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039745670 1175 NEELNlLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIEnsdiSPEMESP 1243
Cdd:pfam15921 926 AEDKG-RAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGSKSSETCSREPVLLH----AGELEDP 989
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
312-1026 |
6.82e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 6.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 312 KEKSGVIKEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLT---QEMMTEKERSSVVIARMKDRIGTL-E 387
Cdd:TIGR02169 207 REKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTeeiSELEKRLEEIEQLLEELNKKIKDLgE 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 388 KEHNIFQNKM---HASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGRLVSE 464
Cdd:TIGR02169 287 EEQLRVKEKIgelEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-KRRDKLTEEYAELKEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 465 LNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKrtaeheaaqqdLQSKFVAKENEVQSLHSKLTDTLV 544
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDR-----------LQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 545 SKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIaaqtsasvlaEELHKVIAEKDKQLKQTED 624
Cdd:TIGR02169 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL----------SKLQRELAEAEAQARASEE 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 625 slanEQDHLASKEEELKDVQNMNFLLKAE---VQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQ-------- 693
Cdd:TIGR02169 505 ----RVRGGRAVEEVLKASIQGVHGTVAQlgsVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAgratflpl 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 694 HEVASKMEELKILSEqNKALQSEV------QKLQTAVSQQ-PNKDVVEQMEKCIQEKDE-KLRTVE-ELLE--------- 755
Cdd:TIGR02169 581 NKMRDERRDLSILSE-DGVIGFAVdlvefdPKYEPAFKYVfGDTLVVEDIEAARRLMGKyRMVTLEgELFEksgamtggs 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 756 ---TGLIQVATRE-EELSAIRTENSTLTREVQELKAKQSDQVSFV----SLIEDLKRVIHEKDGQIKSVEELLEVELLKV 827
Cdd:TIGR02169 660 rapRGGILFSRSEpAELQRLRERLEGLKRELSSLQSELRRIENRLdelsQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 828 ANKEKTVQALKQEIEVLKEEIgnaqlekahqlsvtsqvQELQNLLRGKEEQVNSMKAALEDRDRDLRGRgtcaqvcstpQ 907
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSEL-----------------KELEARIEELEEDLHKLEEALNDLEARLSHS----------R 792
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 908 FEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQ--------EELQTVISE 979
Cdd:TIGR02169 793 IPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEienlngkkEELEEELEE 872
|
730 740 750 760
....*....|....*....|....*....|....*....|....*..
gi 1039745670 980 KEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRL 1026
Cdd:TIGR02169 873 LEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRL 919
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
599-1201 |
7.55e-08 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 56.83 E-value: 7.55e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 599 TSASVLAEELHKVIAEKDKQLKQTEDSLAnEQDHLASKEEELKDVQNMnflLKAEVQKLQALANEQAATAHEVEKMQKSI 678
Cdd:PRK01156 131 NSIFVGQGEMDSLISGDPAQRKKILDEIL-EINSLERNYDKLKDVIDM---LRAEISNIDYLEEKLKSSNLELENIKKQI 206
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 679 HVKEDKIRLLEEQLQHEVA-------------SKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDV-----VEQMEKCI 740
Cdd:PRK01156 207 ADDEKSHSITLKEIERLSIeynnamddynnlkSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNyykelEERHMKII 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 741 QEKDEKLRTVEELLETGLIQVATREEELSAIRTENST---LTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDG---QIK 814
Cdd:PRK01156 287 NDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKyhaIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGyemDYN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 815 SVEELLEVELLKVANKEKTVQALKQEI-EVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRD- 892
Cdd:PRK01156 367 SYLKSIESLKKKIEEYSKNIERMSAFIsEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNm 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 893 --LRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLkcqlshqkhQQASFPSQ 970
Cdd:PRK01156 447 emLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYL---------ESEEINKS 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 971 EELQTVISEKEKEITDLCNELESLKNA-VEHQRKKNNERRQHVEAIELESKDLLKRLfptvSVPSNLNYSEWLRGFEKKA 1049
Cdd:PRK01156 518 INEYNKIESARADLEDIKIKINELKDKhDKYEEIKNRYKSLKLEDLDSKRTSWLNAL----AVISLIDIETNRSRSNEIK 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1050 KacvagtsdaeAVKVLEHRLKEasemhtlLQLECEKYKSVlaeTEGILQKLQRSVEQEESKWKiKADESQRMIKQLRRER 1129
Cdd:PRK01156 594 K----------QLNDLESRLQE-------IEIGFPDDKSY---IDKSIREIENEANNLNNKYN-EIQENKILIEKLRGKI 652
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039745670 1130 EHLEMEL-EKAEMERSTYVMEVR--ELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQ--NEQTERKK 1201
Cdd:PRK01156 653 DNYKKQIaEIDSIIPDLKEITSRinDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINdiNETLESMK 729
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
507-785 |
7.96e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 7.96e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 507 IRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 586
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 587 QIQQFHSQIAaqtSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD-----------VQNMNFLLKAEVQ 655
Cdd:TIGR02168 762 EIEELEERLE---EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLlneeaanlrerLESLERRIAATER 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 656 KLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQH-----------------EVASKMEELKILSEQNKALQSEVQ 718
Cdd:TIGR02168 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerasleealallrsELEELSEELRELESKRSELRRELE 918
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039745670 719 KLQTAVSQQPNKdvVEQMEKCIQEKDEKLRTVEEL-LETGLIQVATREEELSAIRTENSTLTREVQEL 785
Cdd:TIGR02168 919 ELREKLAQLELR--LEGLEVRIDNLQERLSEEYSLtLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
387-1270 |
1.26e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 56.59 E-value: 1.26e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 387 EKEHNIFQNKMHASYQET-QQMQMKFQQVQEQMEAEIAHLKQENGI---LRDAVSNTTNQLESKQ------SAELNKLRQ 456
Cdd:TIGR00606 173 QKFDEIFSATRYIKALETlRQVRQTQGQKVQEHQMELKYLKQYKEKaceIRDQITSKEAQLESSReivksyENELDPLKN 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 457 DCGRlVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE--------AERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAK 528
Cdd:TIGR00606 253 RLKE-IEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELkmekvfqgTDEQLNDLYHNHQRTVREKERELVDCQRELEKL 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 529 ENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQ-DILEQNEALKAQIQQFHSQIAAQTS-----AS 602
Cdd:TIGR00606 332 NKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLElDGFERGPFSERQIKNFHTLVIERQEdeaktAA 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 603 VLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHvKE 682
Cdd:TIGR00606 412 QLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELS-KA 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 683 DKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKlqtavsqQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVA 762
Cdd:TIGR00606 491 EKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQL-------NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELT 563
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 763 TREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTvQALKQEIE 842
Cdd:TIGR00606 564 SLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGS-QDEESDLE 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 843 VLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKE-------EQVNSMKAALEDRDRDLRGRGTCAqvcsTPQFEELESVL 915
Cdd:TIGR00606 643 RLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENqsccpvcQRVFQTEAELQEFISDLQSKLRLA----PDKLKSTESEL 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 916 KEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHqqaSFPSQEELQTVISEKEKEITDLCNELESLK 995
Cdd:TIGR00606 719 KKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKN---DIEEQETLLGTIMPEEESAKVCLTDVTIME 795
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 996 NAVEhqRKKNNERRQHVEAIELESKDLlkrlfptvsvpsNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLehrLKEASEM 1075
Cdd:TIGR00606 796 RFQM--ELKDVERKIAQQAAKLQGSDL------------DRTVQQVNQEKQEKQHELDTVVSKIELNRKL---IQDQQEQ 858
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1076 HTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKiKADESQRMIKQLRREREHLEMELEKAEMERSTYV-------- 1147
Cdd:TIGR00606 859 IQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELST-EVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIssketsnk 937
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1148 ---MEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLK-TQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKISLK 1223
Cdd:TIGR00606 938 kaqDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKeTELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWL 1017
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 1039745670 1224 AAGDTVVIENSDISPEMESPEKETMSVSLNQtVTQLQQLLQEVNQQL 1270
Cdd:TIGR00606 1018 QDNLTLRKRENELKEVEEELKQHLKEMGQMQ-VLQMKQEHQKLEENI 1063
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
606-1213 |
3.97e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 3.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 606 EELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVqnmnfllKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKI 685
Cdd:PRK03918 189 ENIEELIKEKEKELEEVLREINEISSELPELREELEKL-------EKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 686 RLLEEQLQhEVASKMEELKilseqnkalqsevqklqtavsqqpnkDVVEQMEKcIQEKDEKLRTVEELLETGLIQVATRE 765
Cdd:PRK03918 262 RELEERIE-ELKKEIEELE--------------------------EKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 766 EELSAIRTENSTLTREVQELKAKQSDqvsfVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALK-QEIEVL 844
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEKEER----LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTgLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 845 KEEIGNAQLEKahqLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRdlrGRGTCAqVCSTPQFEELESVLKEK-DNEIK 923
Cdd:PRK03918 390 EKELEELEKAK---EEIEEEISKITARIGELKKEIKELKKAIEELKK---AKGKCP-VCGRELTEEHRKELLEEyTAELK 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 924 RIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRK 1003
Cdd:PRK03918 463 RIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1004 KNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEkkakacvagtsdaeAVKVLEHRLKEASEMHtllqlec 1083
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE--------------SVEELEERLKELEPFY------- 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1084 EKYksvlaetegilqklqrsveqeeskwkIKADESQRMIKQLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKK 1163
Cdd:PRK03918 602 NEY--------------------------LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039745670 1164 LDDSYSEAVR---------------QNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSL 1213
Cdd:PRK03918 656 YSEEEYEELReeylelsrelaglraELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKAL 720
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
353-1133 |
5.87e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.20 E-value: 5.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 353 ASKERCKQLTQEMmTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGIL 432
Cdd:TIGR00618 160 AKSKEKKELLMNL-FPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 433 RDAVSNTTNQLESKQSAElnKLRQDCGRLVSELNEKTGKLqqegvqkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTA 512
Cdd:TIGR00618 239 QQSHAYLTQKREAQEEQL--KKQQLLKQLRARIEELRAQE---------AVLEETQERINRARKAAPLAAHIKAVTQIEQ 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 513 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQleQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFH 592
Cdd:TIGR00618 308 QAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ--RRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQ 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 593 SQIAAQTSAS-VLAEELHKVIAEKDKQLKQTEdSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLqalANEQAATAHEV 671
Cdd:TIGR00618 386 QQKTTLTQKLqSLCKELDILQREQATIDTRTS-AFRDLQGQLAHAKKQQELQQRYAELCAAAITCT---AQCEKLEKIHL 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 672 EKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQN-------KALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKD 744
Cdd:TIGR00618 462 QESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQeepcplcGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 745 EKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLkrvihekdGQIKSVEELLEVEL 824
Cdd:TIGR00618 542 TSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDL--------TEKLSEAEDMLACE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 825 LKVANKEKTVQALKQEIEVLKEeignaQLEKAHQLSVTSQVQELQNLLRGKEEqvnsmkaaledrdrdlrgrgtcaqvcs 904
Cdd:TIGR00618 614 QHALLRKLQPEQDLQDVRLHLQ-----QCSQELALKLTALHALQLTLTQERVR--------------------------- 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 905 tpqfEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLshqkhqqasfpsqeelqTVISEKEKEI 984
Cdd:TIGR00618 662 ----EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELE-----------------THIEEYDREF 720
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 985 TDLCNELESLKNAVEHQRKKNNERRQHveaieleskdlLKRLFPTVSVPSNLNYSewlRGFEKKAKACVAGTSDAEAVKV 1064
Cdd:TIGR00618 721 NEIENASSSLGSDLAAREDALNQSLKE-----------LMHQARTVLKARTEAHF---NNNEEVTAALQTGAELSHLAAE 786
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039745670 1065 LEHRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQLRREREHLE 1133
Cdd:TIGR00618 787 IQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
680-1031 |
6.48e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.48e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 680 VKEDKIRLLEEQLQHEVaSKMEELKILSEQNKALQSEVQKL-QTAVSQQpnkdvVEQMEKCIQEKDEKLRTVEELLETGL 758
Cdd:TIGR02169 184 ENIERLDLIIDEKRQQL-ERLRREREKAERYQALLKEKREYeGYELLKE-----KEALERQKEAIERQLASLEEELEKLT 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 759 IQVATREEELSAIRTENSTLTREVQELKakQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALK 838
Cdd:TIGR02169 258 EEISELEKRLEEIEQLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 839 QEIEVLKEEIGNAQLEKAhqlSVTSQVQELQ---NLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTP---QFEELE 912
Cdd:TIGR02169 336 AEIEELEREIEEERKRRD---KLTEEYAELKeelEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINElkrELDRLQ 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 913 SVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQ-EELQTVISEKEKEITDLCNEL 991
Cdd:TIGR02169 413 EELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQElYDLKEEYDRVEKELSKLQREL 492
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1039745670 992 EslknAVEHQRKKNNERRQHVEAIELESKDLLKRLFPTVS 1031
Cdd:TIGR02169 493 A----EAEAQARASEERVRGGRAVEEVLKASIQGVHGTVA 528
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
309-801 |
7.28e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.87 E-value: 7.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 309 DLLKEKSGVIKEALKKSNKgeLSGLLHQLQEKERLLSAMKedaaASKERCKQLTQEMMTEKERSSVviarMKDRIGTLEK 388
Cdd:TIGR04523 170 ELENELNLLEKEKLNIQKN--IDKIKNKLLKLELLLSNLK----KKIQKNKSLESQISELKKQNNQ----LKDNIEKKQQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 389 EHNIFQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDaVSNTTNQLESKQSAELNKLRQDCGRLV-SELNE 467
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQDWNKELkSELKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 468 KTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKfvakENEVQSLHSKLTDTLVSKQ 547
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----KKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 548 QLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIA----AQTSASVLAEELHKVIAEKDKQLKQTE 623
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKdltnQDSVKELIIKNLDNTRESLETQLKVLS 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 624 DSLANEQDHLASKEEELKDVQNMNFLLKAEV----QKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEqlqhEVASK 699
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKkeleEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED----ELNKD 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 700 MEELK--ILSEQNKALQSEVQKLQTAVSQQPNKDvvEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENST 777
Cdd:TIGR04523 551 DFELKkeNLEKEIDEKNKEIEELKQTQKSLKKKQ--EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEK 628
|
490 500
....*....|....*....|....
gi 1039745670 778 LTREVQELKAKQSDQVSFVSLIED 801
Cdd:TIGR04523 629 LSSIIKNIKSKKNKLKQEVKQIKE 652
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
370-726 |
1.13e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 370 ERSSVVIARmKDRIGTLEKEhnifQNKMHASYQETQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTTNQLEsKQSA 449
Cdd:TIGR02168 667 KTNSSILER-RREIEELEEK----IEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA-RLEA 740
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 450 ELNKLRQDCGRLVSELNEKTG-------KLQQEGVQKKNAEQAATQLKVQLQEAERRWEEvqsyIRKRTAEHEAAQQDLQ 522
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAeieeleeRLEEAEEELAEAEAEIEELEAQIEQLKEELKA----LREALDELRAELTLLN 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 523 SKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAs 602
Cdd:TIGR02168 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE- 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 603 vlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnfllkaEVQKLQALANEQAATAHEVEKMQ----KSI 678
Cdd:TIGR02168 896 --LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVR------IDNLQERLSEEYSLTLEEAEALEnkieDDE 967
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039745670 679 HVKEDKIRLLEEQLQH----------EVASKMEELKILSEQNKALQSEVQKLQTAVSQ 726
Cdd:TIGR02168 968 EEARRRLKRLENKIKElgpvnlaaieEYEELKERYDFLTAQKEDLTEAKETLEEAIEE 1025
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
347-1008 |
2.32e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 52.36 E-value: 2.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 347 MKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQnkmhasyQETQQMQMKFQQVQeQMEAEIAHLK 426
Cdd:TIGR00606 403 QEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE-------KKQEELKFVIKELQ-QLEGSSDRIL 474
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 427 QENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEvqsy 506
Cdd:TIGR00606 475 ELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQ---- 550
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 507 IRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDtlvsKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 586
Cdd:TIGR00606 551 IRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKE----INQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYED 626
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 587 QIQQFHSQIAAQTSASVLAEELHKviAEKDKQLKQTEDSLANEQ-DHLASKEEELKDVQNMNFLLKAEVQ----KLQALA 661
Cdd:TIGR00606 627 KLFDVCGSQDEESDLERLKEEIEK--SSKQRAMLAGATAVYSQFiTQLTDENQSCCPVCQRVFQTEAELQefisDLQSKL 704
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 662 NEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQ 741
Cdd:TIGR00606 705 RLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESA 784
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 742 EKDEKLRTVEELLETGLIQVATREEELSAiRTENSTLTREVQELKAKQSDQV----SFVSLIEDLKRVIHEKDGQI---K 814
Cdd:TIGR00606 785 KVCLTDVTIMERFQMELKDVERKIAQQAA-KLQGSDLDRTVQQVNQEKQEKQheldTVVSKIELNRKLIQDQQEQIqhlK 863
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 815 SVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLE-KAHQLSVTSQVQELQNLLRGKEEQVNSMKAA-------L 886
Cdd:TIGR00606 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREiKDAKEQDSPLETFLEKDQQEKEELISSKETSnkkaqdkV 943
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 887 EDRDRDLRGRGTCAQVCSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQAS 966
Cdd:TIGR00606 944 NDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTL 1023
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 1039745670 967 FPSQEELQTVISEKEKEITDLcNELESLKNAVEHQRKKNNER 1008
Cdd:TIGR00606 1024 RKRENELKEVEEELKQHLKEM-GQMQVLQMKQEHQKLEENID 1064
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
427-856 |
2.34e-06 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 51.61 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 427 QENGILRDAVSNTTNQLEskqsaELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERrweevqsy 506
Cdd:pfam19220 3 QRNELLRVRLGEMADRLE-----DLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRR-------- 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 507 irkrtaeheaaqqdlqskfvakenEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 586
Cdd:pfam19220 70 ------------------------ELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALER 125
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 587 QIQQFHSQIAAqtsasvLAEELhkviAEKDKQLKQTEDSLAneqdhlaSKEEELKDVQNMNFLLKAEVQKLQALANEQAA 666
Cdd:pfam19220 126 QLAAETEQNRA------LEEEN----KALREEAQAAEKALQ-------RAEGELATARERLALLEQENRRLQALSEEQAA 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 667 TAHEVEK----MQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEV----QKLQTAVSQQPNKDVV-EQME 737
Cdd:pfam19220 189 ELAELTRrlaeLETQLDATRARLRALEGQLAAEQAERERAEAQLEEAVEAHRAERaslrMKLEALTARAAATEQLlAEAR 268
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 738 KCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELkakQSDQVSFVSLIEDLKRVIHEKDGQIKSVE 817
Cdd:pfam19220 269 NQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEADLERRTQQFQEM---QRARAELEERAEMLTKALAAKDAALERAE 345
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 1039745670 818 ELLEVELLKVANKEKTV----QALKQEIEVLKEEIGNAQLEKA 856
Cdd:pfam19220 346 ERIASLSDRIAELTKRFeverAALEQANRRLKEELQRERAERA 388
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
546-1265 |
3.13e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 3.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 546 KQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEalKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDS 625
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK--KALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 626 LANEQDH---LASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKmQKSIHVKEDKIRLLEEQLQHEVASKMEE 702
Cdd:pfam02463 249 EQEEIESskqEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELK-SELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 703 LKILSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGliqvatREEELSAIRTENSTLTREV 782
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLE------SERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 783 QELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVT 862
Cdd:pfam02463 402 EEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVK 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 863 SQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGtcaqvcstPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSEL 942
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGLKVLLALI--------KDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 943 LKEVQEENKFLKCQL----SHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELE 1018
Cdd:pfam02463 554 SATADEVEERQKLVRalteLPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1019 SKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKACVAGTSDAEAVKVLEHRLKEASEM-HTLLQLECEKYKSVLAETEGIL 1097
Cdd:pfam02463 634 LTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAkEEILRRQLEIKKKEQREKEELK 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1098 QKLQRSVEQEESKWKIKADESQRMIKQLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEE 1177
Cdd:pfam02463 714 KLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKE 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1178 LNLLKTQLNEthsklqNEQTERKKVADDLHKAQQSLNSIHSKISLKAAGDTVVIENSDISPEMESPEKETMSVSLNQTVT 1257
Cdd:pfam02463 794 EKLKAQEEEL------RALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEE 867
|
....*...
gi 1039745670 1258 QLQQLLQE 1265
Cdd:pfam02463 868 LLQELLLK 875
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
689-993 |
3.43e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 3.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 689 EEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKdvVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEEL 768
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK--IGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 769 SAIRTENSTLTREVQELkakQSDQVSFVSLIEDLKRviHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEvlKEEI 848
Cdd:TIGR02169 754 ENVKSELKELEARIEEL---EEDLHKLEEALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLN--RLTL 826
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 849 GNAQLEKAhqlsvtsqVQELQNLLRGKEEQVNSMKAALEDRDRDLrgrgtcaqvcstpqfEELESVLKEKDNEIKRIEVK 928
Cdd:TIGR02169 827 EKEYLEKE--------IQELQEQRIDLKEQIKSIEKEIENLNGKK---------------EELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039745670 929 LKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQAsfpSQEELQTVISEKEKEITDLCNELES 993
Cdd:TIGR02169 884 LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS---ELKAKLEALEEELSEIEDPKGEDEE 945
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
546-1221 |
7.92e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 7.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 546 KQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSA----SVLAEELHKVIAEKDKQL-- 619
Cdd:TIGR02169 197 RQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEEleklTEEISELEKRLEEIEQLLee 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 620 --KQTEDSLANEQDHLASKEEELK-DVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIrlleEQLQHEV 696
Cdd:TIGR02169 277 lnKKIKDLGEEEQLRVKEKIGELEaEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREI----EEERKRR 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 697 ASKMEELKILSEQNKALQSEVQKLQT--AVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETgliqVATREEELSAIRte 774
Cdd:TIGR02169 353 DKLTEEYAELKEELEDLRAELEEVDKefAETRDELKDYREKLEKLKREINELKRELDRLQEE----LQRLSEELADLN-- 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 775 nstltrevQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIgnAQLE 854
Cdd:TIGR02169 427 --------AAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQREL--AEAE 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 855 KAHQLSvtsqvqelqnllrgkEEQVNSMKAALEDRDRDLRG-RGTCAQVCST-PQFE-ELESVLkekDNEIKRIEVklkD 931
Cdd:TIGR02169 497 AQARAS---------------EERVRGGRAVEEVLKASIQGvHGTVAQLGSVgERYAtAIEVAA---GNRLNNVVV---E 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 932 TESDVSKMSELLKEVqeenkflkcqlshqKHQQASFPSQEELQTVISEKEKEITDLCneLESLKNAVEHQRKKNNERRQH 1011
Cdd:TIGR02169 556 DDAVAKEAIELLKRR--------------KAGRATFLPLNKMRDERRDLSILSEDGV--IGFAVDLVEFDPKYEPAFKYV 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1012 V-EAIELESKDLLKRL---FPTVSVPSNLNYSEWLR--GFEKKAKACVAGTSDAEAVKVLEHRLKEASEMHTLLQLECEK 1085
Cdd:TIGR02169 620 FgDTLVVEDIEAARRLmgkYRMVTLEGELFEKSGAMtgGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRR 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1086 YKSVLAETEGILQKLQRSV----------EQEESKWKIKADESQRMIKQLRREREHLEMELEKAEMERSTYVMEVRELKD 1155
Cdd:TIGR02169 700 IENRLDELSQELSDASRKIgeiekeieqlEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039745670 1156 LLTELQKKLDDSYSEAVRQ-----NEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSIHSKIS 1221
Cdd:TIGR02169 780 ALNDLEARLSHSRIPEIQAelsklEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
734-1026 |
8.35e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.31 E-value: 8.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 734 EQMEKC--IQEKDEKLRTVEELLETGLIQVATREEELSAIRTEN-STLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKD 810
Cdd:PRK05771 4 VRMKKVliVTLKSYKDEVLEALHELGVVHIEDLKEELSNERLRKlRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKS 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 811 GQ--IKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIgnAQLEKAHQLSVtsqvqELQNLLRGKeeqvnSMKAALED 888
Cdd:PRK05771 84 LEelIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--ERLEPWGNFDL-----DLSLLLGFK-----YVSVFVGT 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 889 RDRDlrgrgtcaqvcstpQFEELESVlKEKDNEIKRIEVKLKDT------ESDVSKMSELLKEVQEENKflkcqlshqkh 962
Cdd:PRK05771 152 VPED--------------KLEELKLE-SDVENVEYISTDKGYVYvvvvvlKELSDEVEEELKKLGFERL----------- 205
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039745670 963 qqaSFPSQEELQTVISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEA---IELESKDLLKRL 1026
Cdd:PRK05771 206 ---ELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEyleIELERAEALSKF 269
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
445-687 |
1.24e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 445 SKQSAELNKLRQdcgrlvsELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQsk 524
Cdd:COG4942 23 AEAEAELEQLQQ-------EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA-- 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 525 fvAKENEVQSLHSKLTDTLVSKQQLEQ--RLMQLMESE--QKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTS 600
Cdd:COG4942 94 --ELRAELEAQKEELAELLRALYRLGRqpPLALLLSPEdfLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 601 AsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHV 680
Cdd:COG4942 172 E---RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGF 248
|
....*..
gi 1039745670 681 KEDKIRL 687
Cdd:COG4942 249 AALKGKL 255
|
|
| Nucleoporin_FG2 |
pfam15967 |
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of ... |
401-565 |
1.33e-05 |
|
Nucleoporin FG repeated region; Nucleoporin_FG2, or nucleoporin p58/p45, is a family of chordate nucleoporins. The proteins carry many repeats of the FG sequence motif.
Pssm-ID: 435043 [Multi-domain] Cd Length: 586 Bit Score: 49.28 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 401 YQETQQMQmKFQQVQEQMEAEI------AHLKQENGI--LRDAVSNTTNQLEsKQSAELNKLRQDCGRLV--SELNEKTG 470
Cdd:pfam15967 250 CQDVENFQ-KFVKEQKQVQEEIsrmsskAMLKVQDDIkaLKQLLSVAASGLQ-RNSLAIDKLKIETAQELknADIALRTQ 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 471 KlQQEGVQKKNAEQA------ATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQ-------SKFVAKENEVQSLHS 537
Cdd:pfam15967 328 K-TPPGLQHENTAPAdyfrslVEQFEVQLQQYRQQIEELENHLTTQSSSSHITPQDLSlamqklyQTFVALAAQLQSVHE 406
|
170 180 190
....*....|....*....|....*....|..
gi 1039745670 538 KLtdTLVSKQQLEQRLMQLMES----EQKRAS 565
Cdd:pfam15967 407 NV--KILKEQYLGYRKAFLEDStdvfEAKRAE 436
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
473-712 |
1.36e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 1.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 473 QQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVakENEVQSLHSKLTDTLVSKQQLEQR 552
Cdd:COG3206 164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEAKLL--LQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 553 LMQLmesEQKRASKEESLQIQVQDILEQNeaLKAQIQQFHSQIAAQtsaSVLAEELHKVIAEKDKQLKQTEDSLANEQDH 632
Cdd:COG3206 242 LAAL---RAQLGSGPDALPELLQSPVIQQ--LRAQLAELEAELAEL---SARYTPNHPDVIALRAQIAALRAQLQQEAQR 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 633 LASKeeelkdvqnmnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQ------HEVASKMEELKIL 706
Cdd:COG3206 314 ILAS-------------LEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEvarelyESLLQRLEEARLA 380
|
....*.
gi 1039745670 707 SEQNKA 712
Cdd:COG3206 381 EALTVG 386
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
784-1206 |
2.11e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 2.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 784 ELKAKQSDQVSFVSLIEDLKRVIHEKD---GQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKahqLS 860
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEkelEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKEL---ES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 861 VTSQVQELQNLLRGKEEQVNSMKAALED------RDRDLRGRGTCAQVCS------TPQFEELESVLKEKDNEIKRIEVK 928
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEEleekvkELKELKEKAEEYIKLSefyeeyLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 929 LKDTESDVSKMSELLKEVQE-ENKFLKCQLSHQKHQQASfPSQEELQTVISE-KEKEITDLCNELESLKNAVEHQRKKNN 1006
Cdd:PRK03918 330 IKELEEKEERLEELKKKLKElEKRLEELEERHELYEEAK-AKKEELERLKKRlTGLTPEKLEKELEELEKAKEEIEEEIS 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1007 ERRQHVEAIELESKDLLKRLfptvsvpsnlnysEWLRGFEKKAKACVAGTSDaeavkvlEHRLKEASEMHtllqLECEKY 1086
Cdd:PRK03918 409 KITARIGELKKEIKELKKAI-------------EELKKAKGKCPVCGRELTE-------EHRKELLEEYT----AELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1087 KSVLAETEGILQKLQRSVEQEESkwKIKADESQRMIKQLRREREHLEMELEKAEMER-STYVMEVRELKDLLTELQKKLD 1165
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEK--VLKKESELIKLKELAEQLKELEEKLKKYNLEElEKKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 1039745670 1166 DSYSEAvrqnEELNLLKTQLNETHSKLQNEQTERKKVADDL 1206
Cdd:PRK03918 543 SLKKEL----EKLEELKKKLAELEKKLDELEEELAELLKEL 579
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
495-1016 |
3.39e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.37 E-value: 3.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 495 EAERRWEEVQSYIRK-----RTAEHEAAQQDLQSKFVAKENEVQSLHSKLT--DTLVSKQQLE--QRLMQLMESEQKRAS 565
Cdd:COG4913 222 DTFEAADALVEHFDDlerahEALEDAREQIELLEPIRELAERYAAARERLAelEYLRAALRLWfaQRRLELLEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 566 KE-ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVlaEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQ 644
Cdd:COG4913 302 AElARLEAELERLEARLDALREELDELEAQIRGNGGDRL--EQLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 645 nmnfllkAEVQKLQALANEQAATAHEvekMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAV 724
Cdd:COG4913 380 -------EEFAALRAEAAALLEALEE---ELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 725 SQQPNKD------VVEQMEkcIQEKDEK--------------------------LRTVEELLETGLIQ---VATREEELS 769
Cdd:COG4913 450 AEALGLDeaelpfVGELIE--VRPEEERwrgaiervlggfaltllvppehyaaaLRWVNRLHLRGRLVyerVRTGLPDPE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 770 AIRTENSTLTRE-----------VQELKAKQSDQVSfVSLIEDLKRV---------------IHEKDGQ--IKSVEELLE 821
Cdd:COG4913 528 RPRLDPDSLAGKldfkphpfrawLEAELGRRFDYVC-VDSPEELRRHpraitragqvkgngtRHEKDDRrrIRSRYVLGF 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 822 VELLKVANKEKTVQALKQEIEVLKEEIgnAQLEKAHQlSVTSQVQELQNLLRGKEEQVNSMK-----AALEDRDRDLRGr 896
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERL--EALEAELD-ALQERREALQRLAEYSWDEIDVASaereiAELEAELERLDA- 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 897 gtcaqvcSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEEnkflkCQLSHQKHQQASFPSQEELQTV 976
Cdd:COG4913 683 -------SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEE-----LDELQDRLEAAEDLARLELRAL 750
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1039745670 977 ISEKEKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIE 1016
Cdd:COG4913 751 LEERFAAALGDAVERELRENLEERIDALRARLNRAEEELE 790
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
352-806 |
3.48e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 48.51 E-value: 3.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 352 AASKERCKQLTQEMmteKERSSVVIARMKDRIGTLEKEHNiFQNKMHASYQETQQmqmkFQQVQEQMEAEIAHLKQENGI 431
Cdd:PRK10929 19 AATAPDEKQITQEL---EQAKAAKTPAQAEIVEALQSALN-WLEERKGSLERAKQ----YQQVIDNFPKLSAELRQQLNN 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 432 LRDAVSNttnqLESKQSAelNKLRQDCGRLVSELNEKTGKLQQEgvQKKNAE---------QAATQLKVQLQEAERRwee 502
Cdd:PRK10929 91 ERDEPRS----VPPNMST--DALEQEILQVSSQLLEKSRQAQQE--QDRAREisdslsqlpQQQTEARRQLNEIERR--- 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 503 VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhskltdtlvskqqleqrlmqlmESEQKRAS-KEESLQIQVQDILEQN 581
Cdd:PRK10929 160 LQTLGTPNTPLAQAQLTALQAESAALKALVDEL----------------------ELAQLSANnRQELARLRSELAKKRS 217
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 582 EALKAQIQQFHSQIAAQTSAsvlaeelhkviaEKDKQLKQTEdSLANEQDHL-ASKEEELKDVQNMNFLLKAEVQKLQAL 660
Cdd:PRK10929 218 QQLDAYLQALRNQLNSQRQR------------EAERALESTE-LLAEQSGDLpKSIVAQFKINRELSQALNQQAQRMDLI 284
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 661 ANEQAATAHEVEKMQKSIhvkeDKIR----------LLEEQLQHEVA------------SKMEELKILSEQNKALQSEVQ 718
Cdd:PRK10929 285 ASQQRQAASQTLQVRQAL----NTLReqsqwlgvsnALGEALRAQVArlpempkpqqldTEMAQLRVQRLRYEDLLNKQP 360
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 719 KLQTAvsQQPNKDVVEQMEKCIQekDEKLRTVEELLETGLIQVATREEELSAIRTENSTLT---REVQELKAK------Q 789
Cdd:PRK10929 361 QLRQI--RQADGQPLTAEQNRIL--DAQLRTQRELLNSLLSGGDTLILELTKLKVANSQLEdalKEVNEATHRylfwvaD 436
|
490 500
....*....|....*....|
gi 1039745670 790 SDQVSF---VSLIEDLKRVI 806
Cdd:PRK10929 437 VSPISLsypLEIAQDLRRLL 456
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
907-1221 |
3.89e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 907 QFEELESVLKEKDNEIKRievkLKDTESDVSKMSELLKEVQEENKFLkcqLSHQKhqqasfpsqEELQTVISEKEKEITD 986
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLER----LRREREKAERYQALLKEKREYEGYE---LLKEK---------EALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 987 LCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLlkrlfptvSVPSNLNYSEWLRGFEKKAKACVAgtsdaeAVKVLE 1066
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL--------GEEEQLRVKEKIGELEAEIASLER------SIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1067 HRLKEASEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQL----------RREREHLEMEL 1136
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELeevdkefaetRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1137 EKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQQSLNSI 1216
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
....*
gi 1039745670 1217 HSKIS 1221
Cdd:TIGR02169 475 KEEYD 479
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
443-891 |
4.02e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.84 E-value: 4.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 443 LESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYI-----RKRTAEHEAA 517
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELeelreELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 518 QQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDI-LEQNEALKAQIQQFHSQIA 596
Cdd:COG4717 127 LLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 597 AQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDhlaskEEELKDVQNMNFLLkAEVQKLQALANEQAATAHEVEKMQK 676
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAAL-----EERLKEARLLLLIA-AALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 677 SIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTA--VSQQPNKDVVEQMEKCIQEKDEKLRTVEELL 754
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAAlgLPPDLSPEELLELLDRIEELQELLREAEELE 360
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 755 ETglIQVATREEELSAIRTENSTLTREVQELKAKQSDQ-VSFVSLIEDLKRVIHEKDGQIKSVEELLEVEL--LKVANKE 831
Cdd:COG4717 361 EE--LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEyQELKEELEELEEQLEELLGELEELLEALDEEEleEELEELE 438
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 832 KTVQALKQEIEVLKEEIGNAQlekaHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDR 891
Cdd:COG4717 439 EELEELEEELEELREELAELE----AELEQLEEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
471-814 |
4.40e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.97 E-value: 4.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 471 KLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLhsKLTDTLVSKQQLE 550
Cdd:PLN02939 64 KLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDF--QLEDLVGMIQNAE 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 551 QRLMQLmesEQKRASKEEslqiQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSL---- 626
Cdd:PLN02939 142 KNILLL---NQARLQALE----DLEKILTEKEALQGKINILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELlirg 214
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 627 ANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLqheVASKMEELKIL 706
Cdd:PLN02939 215 ATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKF---IVAQEDVSKLS 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 707 SEQNKALQSEVQKLQTAVSQQPNKdvVEQMEKCIQEKDEkLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELK 786
Cdd:PLN02939 292 PLQYDCWWEKVENLQDLLDRATNQ--VEKAALVLDQNQD-LRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQ 368
|
330 340
....*....|....*....|....*...
gi 1039745670 787 AKQSDQVSFVSLIEDLKRVIHEKDGQIK 814
Cdd:PLN02939 369 ASDHEIHSYIQLYQESIKEFQDTLSKLK 396
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
399-603 |
6.86e-05 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 46.29 E-value: 6.86e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 399 ASYQETQQMQMKFQQVQEQMEAEIAHLKQENGiLRDAVSNTTNQLESKQS--------AELNKLRQDCGRLVSELNEKTG 470
Cdd:pfam09787 4 SAKQELADYKQKAARILQSKEKLIASLKEGSG-VEGLDSSTALTLELEELrqerdllrEEIQKLRGQIQQLRTELQELEA 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 471 KLQQEGVQkknAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDL-------QSKFVAKENEVQSLHSKLTD-- 541
Cdd:pfam09787 83 QQQEEAES---SREQLQELEEQLATERSARREAEAELERLQEELRYLEEELrrskatlQSRIKDREAEIEKLRNQLTSks 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039745670 542 -TLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASV 603
Cdd:pfam09787 160 qSSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTSINM 222
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
482-712 |
7.74e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 7.74e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 482 AEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQ 561
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA----ALERRIAALARRIRALEQELAALEAELAEL---EK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 562 KRASKEESLQIQVQDILEQNEALKAQIQQ------FHSQIAAQTSASV-LAEELHKVIAEKDKQLKQTEDSLANEQDHLA 634
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQpplallLSPEDFLDAVRRLqYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039745670 635 SKEEELKDVQNMnflLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKA 712
Cdd:COG4942 171 AERAELEALLAE---LEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
433-792 |
1.20e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.57 E-value: 1.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 433 RDAVSNTTNQLESKQSAELNKLrqdCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQsyirkrta 512
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDLHER---LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 513 EHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEAL-------K 585
Cdd:PRK02224 255 TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELrdrleecR 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 586 AQIQQFHSQI-AAQTSASVL---AEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDvqNMNFLLKAEVQK----- 656
Cdd:PRK02224 335 VAAQAHNEEAeSLREDADDLeerAEELREEAAELESELEEAREAVEDRREEIEELEEEIEE--LRERFGDAPVDLgnaed 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 657 -LQALANEQAATAHEVEKMQKSIHVKEDKIR----LLEEQLQHEVASKMEELKILS------EQNKALQSEVQKLQTAVS 725
Cdd:PRK02224 413 fLEELREERDELREREAELEATLRTARERVEeaeaLLEAGKCPECGQPVEGSPHVEtieedrERVEELEAELEDLEEEVE 492
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039745670 726 QQPNK-----DVVEQmEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQ 792
Cdd:PRK02224 493 EVEERleraeDLVEA-EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEA 563
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
526-1202 |
1.45e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 526 VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKaqiqqfHSQIAAQTSASVLA 605
Cdd:pfam05483 95 VSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATR------HLCNLLKETCARSA 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 606 EELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQN----MNFLLKAEVQKLQalaneqaataHEVEKMQKSIHVK 681
Cdd:pfam05483 169 EKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENarleMHFKLKEDHEKIQ----------HLEEEYKKEINDK 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 682 EDKIRLLEEQLQhEVASKMEELKILSEQNKALQSEVQKlQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGL--- 758
Cdd:pfam05483 239 EKQVSLLLIQIT-EKENKMKDLTFLLEESRDKANQLEE-KTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKale 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 759 --IQVATREeeLSAIRTENSTLTREVQELKAKQSDQVS----FVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEK 832
Cdd:pfam05483 317 edLQIATKT--ICQLTEEKEAQMEELNKAKAAHSFVVTefeaTTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 833 TVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFEELE 912
Cdd:pfam05483 395 EMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVE 474
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 913 SVLKEKDNEikrievKLKDTE--SDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEE--LQTVISEKEKEiTDLC 988
Cdd:pfam05483 475 DLKTELEKE------KLKNIEltAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEErmLKQIENLEEKE-MNLR 547
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 989 NELESLKNAVEHQRK----KNNERRQHVEAIELESKDLLKRLFPTVSVPSNL-----NYSEWLRGFEKKAKAC-VAGTSD 1058
Cdd:pfam05483 548 DELESVREEFIQKGDevkcKLDKSEENARSIEYEVLKKEKQMKILENKCNNLkkqieNKNKNIEELHQENKALkKKGSAE 627
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1059 AEAVKVLEHRLKEasemhtlLQLECEKYKSVLAETEGILQK-------LQRSVEQEESKWKIKADESQRMIKQLRREREH 1131
Cdd:pfam05483 628 NKQLNAYEIKVNK-------LELELASAKQKFEEIIDNYQKeiedkkiSEEKLLEEVEKAKAIADEAVKLQKEIDKRCQH 700
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039745670 1132 LEMELEK-AEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKV 1202
Cdd:pfam05483 701 KIAEMVAlMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKL 772
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
415-656 |
1.47e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 46.37 E-value: 1.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 415 QEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNK--------LRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAA 486
Cdd:NF012221 1564 KERAEADRQRLEQEKQQQLAAISGSQSQLESTDQNALETngqaqrdaILEESRAVTKELTTLAQGLDALDSQATYAGESG 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 487 TQLKVQLqeAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKlTDTLVskQQLEQRLMQLMESEQKRASK 566
Cdd:NF012221 1644 DQWRNPF--AGGLLDRVQEQLDDAKKISGKQLADAKQRHVDNQQKVKDAVAK-SEAGV--AQGEQNQANAEQDIDDAKAD 1718
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 567 EESLQIQVqdILEQNEALKAQIQQFHS----QIAAQTSASVLAEELHKVIAEKdKQLKQTEDSLANEQ----DHLASKEE 638
Cdd:NF012221 1719 AEKRKDDA--LAKQNEAQQAESDANAAandaQSRGEQDASAAENKANQAQADA-KGAKQDESDKPNRQgaagSGLSGKAY 1795
|
250
....*....|....*...
gi 1039745670 639 ELKDVQNMNFLLKAEVQK 656
Cdd:NF012221 1796 SVEGVAEPGSHINPDSPA 1813
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
612-1200 |
1.55e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.17 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 612 IAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQalaNEQAATAHEVEKMQKSIhvkeDKIRLLEEQ 691
Cdd:TIGR04523 126 LNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELE---NELNLLEKEKLNIQKNI----DKIKNKLLK 198
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 692 LQHevasKMEELKILSEQNKALQSEVQKLQTAVSQ-----QPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREE 766
Cdd:TIGR04523 199 LEL----LLSNLKKKIQKNKSLESQISELKKQNNQlkdniEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQK 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 767 ELSAIRTENSTLTREVQELKAKQSD--QVSFVSLIEDLKrvihekdGQIKSVEELLEVELLKVANKEKTVQALKQEIEVL 844
Cdd:TIGR04523 275 ELEQNNKKIKELEKQLNQLKSEISDlnNQKEQDWNKELK-------SELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 845 KEEIGNAQLEKahqLSVTSQVQELQNLLRGKEEQVNSMKAALEDRdrdlrgrgtcaqvcsTPQFEELESVLKEKDNEIKR 924
Cdd:TIGR04523 348 KKELTNSESEN---SEKQRELEEKQNEIEKLKKENQSYKQEIKNL---------------ESQINDLESKIQNQEKLNQQ 409
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 925 IEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQ-EELQTVISEKEKEITDLCNELESLKNAVEHQRK 1003
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIiKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK 489
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1004 KNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEKKAKAcvagtsdaEAVKVLEHRLKEASEMHTLLQLEC 1083
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKE--------SKISDLEDELNKDDFELKKENLEK 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1084 EKYKsvlaetegiLQKLQRSVEQEESKWKIKADESQRMIKQLRREREHLEMELEKAEMERSTYVMEVRELKDLLTELQKK 1163
Cdd:TIGR04523 562 EIDE---------KNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSI 632
|
570 580 590
....*....|....*....|....*....|....*..
gi 1039745670 1164 LDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERK 1200
Cdd:TIGR04523 633 IKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
336-893 |
1.75e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.98 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 336 QLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ 415
Cdd:pfam12128 277 RQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSEL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 416 EQMEAEIahlkqengilrDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQ-----LK 490
Cdd:pfam12128 357 ENLEERL-----------KALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQaleseLR 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 491 VQLQEAERRWEEVQSYIRKRTAEHE------AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLmesEQKRA 564
Cdd:pfam12128 426 EQLEAGKLEFNEEEYRLKSRLGELKlrlnqaTATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQA---RKRRD 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 565 SKEESLQIQVQDILEQNEALKAQIQQF----HSQIA-AQTSASVLAEELHKVIAEkdKQLKQTEdsLANEQDhlaskEEE 639
Cdd:pfam12128 503 QASEALRQASRRLEERQSALDELELQLfpqaGTLLHfLRKEAPDWEQSIGKVISP--ELLHRTD--LDPEVW-----DGS 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 640 LKDVQNMnFLLKAEVQKLQA---LANEQAATAhEVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSE 716
Cdd:pfam12128 574 VGGELNL-YGVKLDLKRIDVpewAASEEELRE-RLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNA 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 717 VQKLQ--TAVSQQPNKDVVEQMEKCIQEKDEKLRTVE---ELLETGLIQ-VATREEELSAIRTENSTLTREVQELKAKQS 790
Cdd:pfam12128 652 RLDLRrlFDEKQSEKDKKNKALAERKDSANERLNSLEaqlKQLDKKHQAwLEEQKEQKREARTEKQAYWQVVEGALDAQL 731
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 791 DQVSFVSLIEDLKRvihekDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQN 870
Cdd:pfam12128 732 ALLKAAIAARRSGA-----KAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWL 806
|
570 580
....*....|....*....|....
gi 1039745670 871 LLRGK-EEQVNSMKAALEDRDRDL 893
Cdd:pfam12128 807 QRRPRlATQLSNIERAISELQQQL 830
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
419-954 |
1.78e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 419 EAEIAHLKQENGILRDAVSNTTNQLESKQ---SAELNKLRqdcgRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQE 495
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELpelREELEKLE----KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 496 AERRWEEVqsyiRKRTAEHEAAQQDLQS-KFVAKE-NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQ 573
Cdd:PRK03918 264 LEERIEEL----KKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 574 VQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKViaeKDKQLKQTEDSLANEQDHLASKEEELKDVQNMnflLKAE 653
Cdd:PRK03918 340 LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERL---KKRLTGLTPEKLEKELEELEKAKEEIEEEISK---ITAR 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 654 VQKLQALANEQAATAHEVEKMQKSIHV------KEDKIRLLEEQLQhEVASKMEELKILSEQNKALQSEVQKLQTAVSQQ 727
Cdd:PRK03918 414 IGELKKEIKELKKAIEELKKAKGKCPVcgreltEEHRKELLEEYTA-ELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 728 PNKDVVEQMEKCIQEKDEKLRTVE-ELLETGLIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVI 806
Cdd:PRK03918 493 SELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 807 HEKDGQIKSV-------EELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLsvtSQVQELQNLLRGKEEQV 879
Cdd:PRK03918 573 AELLKELEELgfesveeLEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAF---EELAETEKRLEELRKEL 649
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039745670 880 NSMKAAL-EDRDRDLRGRgtcaqvcstpqFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLK 954
Cdd:PRK03918 650 EELEKKYsEEEYEELREE-----------YLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
414-591 |
2.19e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 2.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 414 VQEQMEAEIAHLKQENGILRDAVSNTTNQLESKQsAELNKLRQDCGrlVSELNEKTGKLQQegvQKKNAEQAATQLKVQL 493
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAE-AALEEFRQKNG--LVDLSEEAKLLLQ---QLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 494 QEAERRWEEVQSYI-------------------RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLM 554
Cdd:COG3206 236 AEAEARLAALRAQLgsgpdalpellqspviqqlRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190
....*....|....*....|....*....|....*..
gi 1039745670 555 QLMESEQkraskeESLQIQVQDILEQNEALKAQIQQF 591
Cdd:COG3206 316 ASLEAEL------EALQAREASLQAQLAQLEARLAEL 346
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
415-888 |
4.79e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 4.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 415 QEQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQE-------GVQKKNAEQAAT 487
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLeallaalGLPLPASAEEFA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 488 QLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKltDTLVSKQQLEQR--------------- 552
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERR--KSNIPARLLALRdalaealgldeaelp 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 553 ----LMQLMESEQK-RASKE-------------ESLQIQVQDILEQNeALKAQIQQFHsqiAAQTSASVLAEELHkviae 614
Cdd:COG4913 462 fvgeLIEVRPEEERwRGAIErvlggfaltllvpPEHYAAALRWVNRL-HLRGRLVYER---VRTGLPDPERPRLD----- 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 615 kdkqlkqtEDSLANEqdhLASKEEELKDvqnmnfLLKAEVQKLQALAneQAATAHEVEKMQKSI------------HVKE 682
Cdd:COG4913 533 --------PDSLAGK---LDFKPHPFRA------WLEAELGRRFDYV--CVDSPEELRRHPRAItragqvkgngtrHEKD 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 683 DKIRLLEE-QLQHEVASKmeeLKILSEQNKALQSEVQKLQTAVSQqpnkdvVEQMEKCIQEKDEKLRTVEELLETGL--- 758
Cdd:COG4913 594 DRRRIRSRyVLGFDNRAK---LAALEAELAELEEELAEAEERLEA------LEAELDALQERREALQRLAEYSWDEIdva 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 759 ---IQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTV- 834
Cdd:COG4913 665 saeREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAr 744
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 1039745670 835 QALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ-VNSMKAALED 888
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEElERAMRAFNRE 799
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
526-746 |
7.14e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 7.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 526 VAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHSQIAA-QTSASVL 604
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAElEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 605 AEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKMQKSIHVKEDK 684
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039745670 685 IRLLE-------EQLQHEVASKMEELKILSEQNKALQSEVQKLQTavSQQPNKDVVEQMEKCIQEKDEK 746
Cdd:COG4942 176 LEALLaeleeerAALEALKAERQKLLARLEKELAELAAELAELQQ--EAEELEALIARLEAEAAAAAER 242
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
557-858 |
7.83e-04 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 43.69 E-value: 7.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 557 MESEQKR-ASKEESLQIQVQDILEQNEALKAQIQQfHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLAS 635
Cdd:PLN03229 413 VDPERKVnMKKREAVKTPVRELEGEVEKLKEQILK-AKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 636 KEEELK---DVQNMNFLLKAEVQKLQALANEQAATA-------HEVEKMQ-----KSIHVKEDKIRLLEEQLQHEVASKM 700
Cdd:PLN03229 492 REEFSKansQDQLMHPVLMEKIEKLKDEFNKRLSRApnylslkYKLDMLNefsraKALSEKKSKAEKLKAEINKKFKEVM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 701 EELKIlSEQNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAiRTENSTLTR 780
Cdd:PLN03229 572 DRPEI-KEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAE-QTPPPNLQE 649
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039745670 781 EVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIksveeLLEVELLKVANKEKtVQALKQEI-EVLKEEIGNAQLEKAHQ 858
Cdd:PLN03229 650 KIESLNEEINKKIERVIRSSDLKSKIELLKLEV-----AKASKTPDVTEKEK-IEALEQQIkQKIAEALNSSELKEKFE 722
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
670-1174 |
8.14e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 8.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 670 EVEKMQKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVsqqpnkdvvEQMEKCIQEKDEKLRT 749
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEEL---------EELEAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 750 VEELletglIQVATREEELSAIRTENSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKSVEELLEVEllkvan 829
Cdd:COG4717 121 LEKL-----LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLA------ 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 830 KEKTVQALKQEIEVLKEEIGNAQlekahqlsvtSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQFE 909
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELE----------EELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALL 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 910 ELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASfpSQEELQTVISEKEKEITDLCN 989
Cdd:COG4717 260 ALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEEL--EEEELEELLAALGLPPDLSPE 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 990 ELESLKNAVEHQRKKNNERRQHVEAIELES-KDLLKRLFPTVSVPSnlnysewLRGFEKKAKACVAGTSDAEAVKVLEHR 1068
Cdd:COG4717 338 ELLELLDRIEELQELLREAEELEEELQLEElEQEIAALLAEAGVED-------EEELRAALEQAEEYQELKEELEELEEQ 410
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1069 LKEA--SEMHTLLQLECEKYKSVLAETEGILQKLQRSVEQ-----EESKWKIKADESQRMIKQLRREREHLEMELEKAEM 1141
Cdd:COG4717 411 LEELlgELEELLEALDEEELEEELEELEEELEELEEELEElreelAELEAELEQLEEDGELAELLQELEELKAELRELAE 490
|
490 500 510
....*....|....*....|....*....|...
gi 1039745670 1142 ERSTYVMevreLKDLLTELQKKLDDSYSEAVRQ 1174
Cdd:COG4717 491 EWAALKL----ALELLEEAREEYREERLPPVLE 519
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
463-668 |
1.03e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.89 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 463 SELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEHEAAQQDLQskfvAKENEVQSLHSKLTDT 542
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIA----EAEAEIEERREELGER 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 543 LVSKQQ---LEQRLMQLMESEQ-----KRASKEESLQIQVQDILEQNEALKAQIQQFHSQI--------AAQTSASVLAE 606
Cdd:COG3883 92 ARALYRsggSVSYLDVLLGSESfsdflDRLSALSKIADADADLLEELKADKAELEAKKAELeaklaeleALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039745670 607 ELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATA 668
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1053-1190 |
1.09e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.31 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1053 VAGTSDAEAVKVLEHRLKEASEmhtllqlecEKYKSVLAETEGILQKLQRSVEQEESKWK---IKADESQRMIKQLRRER 1129
Cdd:COG2433 373 IRGLSIEEALEELIEKELPEEE---------PEAEREKEHEERELTEEEEEIRRLEEQVErleAEVEELEAELEEKDERI 443
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039745670 1130 EHLEMELEKAEMERSTYVMEVRELKDLLTE---LQKKLDDSYSEAVRQNEELNLLKTQLNETHS 1190
Cdd:COG2433 444 ERLERELSEARSEERREIRKDREISRLDREierLERELEEERERIEELKRKLERLKELWKLEHS 507
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
311-640 |
1.10e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.52 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 311 LKEKSGVI---------KEALKKSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERssvvIARMKD 381
Cdd:TIGR02169 648 LFEKSGAMtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRK----IGEIEK 723
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 382 RIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQ----------EQMEAEIAHLKQENGILRDAVSNTTNQLESKQSAEL 451
Cdd:TIGR02169 724 EIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkeleariEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL 803
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 452 NKLRQDCGRLVSELNEKTGKLQQEG------------------VQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAE 513
Cdd:TIGR02169 804 EEEVSRIEARLREIEQKLNRLTLEKeylekeiqelqeqridlkEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR 883
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 514 HEaaqqDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEA------LKAQ 587
Cdd:TIGR02169 884 LG----DLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEelsledVQAE 959
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|...
gi 1039745670 588 IQQFHSQIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEEL 640
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
324-529 |
1.14e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 324 KSNKGELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMTEKERSSVviaRMKDRIGTLEKEHNIFQNkMHASYQE 403
Cdd:pfam15921 649 KDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKM---QLKSAQSELEQTRNTLKS-MEGSDGH 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 404 TQQMQMKFQQVQEQMEAEIAHLKQENGILRDAVSNTtNQLESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAE 483
Cdd:pfam15921 725 AMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA-NKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLK 803
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 1039745670 484 QAATQLKVQLQEAERRWEEVQSYIRKRtaEHEAAQQDLQSKFVAKE 529
Cdd:pfam15921 804 EKVANMEVALDKASLQFAECQDIIQRQ--EQESVRLKLQHTLDVKE 847
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
416-600 |
1.37e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 416 EQMEAEIAHLKQENGILrdAVSNTTNQLESKQS---AELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAAT--QLK 490
Cdd:COG3206 192 EEAEAALEEFRQKNGLV--DLSEEAKLLLQQLSeleSQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPViqQLR 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 491 VQLQEAERRWEE-----------VQSYIRKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 559
Cdd:COG3206 270 AQLAELEAELAElsarytpnhpdVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL 349
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039745670 560 EQKRASKEESLQIQvQDILEQneaLKAQIQQFHSQIAAQTS 600
Cdd:COG3206 350 EAELRRLEREVEVA-RELYES---LLQRLEEARLAEALTVG 386
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
656-1025 |
1.62e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 656 KLQALANEQAATAHEVEKMQKSIHVKEDKIRLLE----------EQLQHEVASKMEELKILSEQNKALQSEVQKlqtavs 725
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASrkigeiekeiEQLEQEEEKLKERLEELEEDLSSLEQEIEN------ 755
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 726 qqpNKDVVEQMEKCIQEKDEKLRTVEELLETglIQVATREEELSAIRTENSTLTREVQELKAkqsdqvsfvsliedlkrV 805
Cdd:TIGR02169 756 ---VKSELKELEARIEELEEDLHKLEEALND--LEARLSHSRIPEIQAELSKLEEEVSRIEA-----------------R 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 806 IHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAhqlSVTSQVQELQNLLRgkeeqvnsmkaA 885
Cdd:TIGR02169 814 LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKE---ELEEELEELEAALR-----------D 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 886 LEDRDRDLRGrgtcaqvcstpQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQA 965
Cdd:TIGR02169 880 LESRLGDLKK-----------ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPE 948
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039745670 966 SFPSQEELQTVISEKEKEITDlcneLESLKNAVEHQRKKNNERRQHVEA----IELESKDLLKR 1025
Cdd:TIGR02169 949 EELSLEDVQAELQRVEEEIRA----LEPVNMLAIQEYEEVLKRLDELKEkrakLEEERKAILER 1008
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
799-1004 |
1.81e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 799 IEDLKRVIHEKDGQIKSVEELLEVELLKVANKEKTVQALKQEIEVLKEEIGNAQLEKAH-QLSVTSQVQELQNLLRG--K 875
Cdd:COG4942 36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAElRAELEAQKEELAELLRAlyR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 876 EEQVNSMKAAL--EDRDRDLRGRGTCAQVcstpqFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFL 953
Cdd:COG4942 116 LGRQPPLALLLspEDFLDAVRRLQYLKYL-----APARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAAL 190
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1039745670 954 KCQLSHQKHQQASFPSQE-ELQTVISEKEKEITDLCNELESLKNAVEHQRKK 1004
Cdd:COG4942 191 EALKAERQKLLARLEKELaELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
910-1168 |
2.77e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 910 ELESVLKEKDNEikRIEVKLKDTeSDVSKMSELLKEVQEENKFLKCQLSHQKHQqasfpSQEELQTVISEK----EKEIT 985
Cdd:PRK05771 32 HIEDLKEELSNE--RLRKLRSLL-TKLSEALDKLRSYLPKLNPLREEKKKVSVK-----SLEELIKDVEEElekiEKEIK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 986 DLCNELESLKNavehQRKKNNERRQHVE---AIELESKDLL-------------KRLFPTVSVPSNLNYSEWLRgfEKKA 1049
Cdd:PRK05771 104 ELEEEISELEN----EIKELEQEIERLEpwgNFDLDLSLLLgfkyvsvfvgtvpEDKLEELKLESDVENVEYIS--TDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1050 KACVAGTSDAEAVKVLEHRLKEASemhtllqlecekYKSVLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQLRRE- 1128
Cdd:PRK05771 178 YVYVVVVVLKELSDEVEEELKKLG------------FERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKy 245
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039745670 1129 -------REHLEMELEKAEME------RSTYVME----VRELKDLLTELQKKLDDSY 1168
Cdd:PRK05771 246 leellalYEYLEIELERAEALskflktDKTFAIEgwvpEDRVKKLKELIDKATGGSA 302
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
294-783 |
2.93e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 294 LKTMMFSEDEALCVVDLLKEKSGVIKEALKKSNK------GELSGLLHQLQEKERLLSAMKEDAAASKERCKQLTQEMMT 367
Cdd:pfam05483 256 MKDLTFLLEESRDKANQLEEKTKLQDENLKELIEkkdhltKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 368 EKERS-------SVVIARMKDRIGTLEKEHNIFQNKMHASYQETQQMQMKFQQVQEQMEaEIAHLKQENGILRDAVSNTT 440
Cdd:pfam05483 336 QMEELnkakaahSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELE-EMTKFKNNKEVELEELKKIL 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 441 NQlESKQSAELNKLRQDCGRLVSELNEKTGKLQQEGVQKKNAEQAATQLKVQLQEAERRWEEVQSYIRKRTAEH-----E 515
Cdd:pfam05483 415 AE-DEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNieltaH 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 516 AAQQDLQSKFVAKE--NEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKAQIQQFHS 593
Cdd:pfam05483 494 CDKLLLENKELTQEasDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEE 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 594 QIAAQTSASVLAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNM-NFLLKAEVQKLQALANEQAATAHEVE 672
Cdd:pfam05483 574 NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAeNKQLNAYEIKVNKLELELASAKQKFE 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 673 KM----QKSIHVKEDKIRLLEEQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNkdvveQMEKCIQEKDEKLR 748
Cdd:pfam05483 654 EIidnyQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEMVALMEKHKH-----QYDKIIEERDSELG 728
|
490 500 510
....*....|....*....|....*....|....*
gi 1039745670 749 TVEELLETGLIQVATREEELSAIRTENSTLTREVQ 783
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLE 763
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
670-1210 |
3.41e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.54 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 670 EVEKMQKSIHVKEDKIRLLEEQLQHEVaskmeelkilsEQNKALQSEVQKLQTAVSQQPNKDVVEQmeKCIQEKDEKLRT 749
Cdd:TIGR04523 41 KLKTIKNELKNKEKELKNLDKNLNKDE-----------EKINNSNNKIKILEQQIKDLNDKLKKNK--DKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 750 VEELLETGLIQVATREEELSAIRTE----NSTLTREVQELKAKQSDQVSFVSLIEDLKRvihekdgQIKSVEELLEVELL 825
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQkkenKKNIDKFLTEIKKKEKELEKLNNKYNDLKK-------QKEELENELNLLEK 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 826 KVANKEKTVQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCST 905
Cdd:TIGR04523 181 EKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKD 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 906 PQFEELESvLKEKDNEIKRIEVKLKDTESDV----SKMSELLKEVQEE-NKFLKCQLSHQKHQQasfpsqEELQTVISEK 980
Cdd:TIGR04523 261 EQNKIKKQ-LSEKQKELEQNNKKIKELEKQLnqlkSEISDLNNQKEQDwNKELKSELKNQEKKL------EEIQNQISQN 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 981 EKEITDLCNELESLKNAVEHQRKKNNERRQHVEAIELESKDLLKRlfptvsvpsNLNYSEWLRGFEKKAKACVAGTSDAE 1060
Cdd:TIGR04523 334 NKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE---------NQSYKQEIKNLESQINDLESKIQNQE 404
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1061 AV-KVLEHRLKEASEMHTLLQLECEKYKS---VLAETEGILQKLQRSVEQEESKWKIKADESQRMIKQLRREREHLEMEL 1136
Cdd:TIGR04523 405 KLnQQKDEQIKKLQQEKELLEKEIERLKEtiiKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL 484
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039745670 1137 EKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQ 1210
Cdd:TIGR04523 485 EQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN 558
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
547-663 |
4.58e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 4.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 547 QQLEQRLMQL------MESEQKRASKE--ESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVIAEKDKQ 618
Cdd:COG0542 414 DELERRLEQLeiekeaLKKEQDEASFErlAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPELEKE 493
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 1039745670 619 LKQTEDSLANEQDHLASK--EEELKDVQNM------NFLLKAEVQKLQALANE 663
Cdd:COG0542 494 LAELEEELAELAPLLREEvtEEDIAEVVSRwtgipvGKLLEGEREKLLNLEEE 546
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
612-815 |
4.64e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 4.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 612 IAEKDKQLKQTEDSLANEQDHLASKEEELKDVQnmnfllkaevQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQ 691
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALL----------KQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 692 LQHEVASKMEELKILSEQNKALQ--SEVQKLQTAVSQQPNKD----------VVEQMEKCIQEKDEKLRTVEEL------ 753
Cdd:COG4942 92 IAELRAELEAQKEELAELLRALYrlGRQPPLALLLSPEDFLDavrrlqylkyLAPARREQAEELRADLAELAALraelea 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039745670 754 ----LETGLIQVATREEELSAIRTE--------NSTLTREVQELKAKQSDQVSFVSLIEDLKRVIHEKDGQIKS 815
Cdd:COG4942 172 eraeLEALLAELEEERAALEALKAErqkllarlEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
602-774 |
5.31e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 5.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 602 SVLAEEL---HKVIAEKDKQLKQTEDSLANEQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEVEKmqksi 678
Cdd:PRK09039 42 FFLSREIsgkDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEG----- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 679 hvkedKIRLLEEQL---QHEVASKMEELKILSEQNKALQSEVQKLQTAVSQQPNKDvveqmekciQEKDEKLRTVEELLE 755
Cdd:PRK09039 117 -----RAGELAQELdseKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD---------RESQAKIADLGRRLN 182
|
170
....*....|....*....
gi 1039745670 756 TGLiqvATREEELSAIRTE 774
Cdd:PRK09039 183 VAL---AQRVQELNRYRSE 198
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
599-878 |
5.68e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 40.88 E-value: 5.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 599 TSASVLAEELHKVIAEKDKQLKQTEDSLAN-EQDHL-ASKEEELKDVQNMNFLLKAEVQKlQALANEQAATAHEVEKMQK 676
Cdd:pfam17380 266 TENEFLNQLLHIVQHQKAVSERQQQEKFEKmEQERLrQEKEEKAREVERRRKLEEAEKAR-QAEMDRQAAIYAEQERMAM 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 677 SIHVKEDKIRL------LEEQLQHEVA---SKMEELKIL----SEQNKALQSEV-----QKLQTAVSQQPNKDVVEQMEK 738
Cdd:pfam17380 345 ERERELERIRQeerkreLERIRQEEIAmeiSRMRELERLqmerQQKNERVRQELeaarkVKILEEERQRKIQQQKVEMEQ 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 739 CIQEKDE----KLRTVEELLETGLIQV----ATREEELSAIRTENSTLTREVQELKAKQSDQvsfvSLIEDLKRVIHEKD 810
Cdd:pfam17380 425 IRAEQEEarqrEVRRLEEERAREMERVrleeQERQQQVERLRQQEEERKRKKLELEKEKRDR----KRAEEQRRKILEKE 500
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039745670 811 GQIKSVEELLEVELLKVANKEktvQALKQEIEVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQ 878
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKE---MEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEER 565
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
565-777 |
6.29e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 6.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 565 SKEESLQIQVQDILEQNEALKAQIQQFHSQIAAQTSAsvlAEELHKVIAEKDKQLKQTEDSLANEQDHLASKEEELKD-- 642
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEE---YNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 643 ---------VQNMNFLLKAE-----VQKLQALANEQAATAHEVEKMQKSIHVKEDKIRLLEEQLQhEVASKMEELKILSE 708
Cdd:COG3883 93 ralyrsggsVSYLDVLLGSEsfsdfLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLA-ELEALKAELEAAKA 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039745670 709 QNKALQSEVQKLQTAVSQQPNKDVVEQMEKCIQEKDEKLRTVEELLETGLIQVATREEELSAIRTENST 777
Cdd:COG3883 172 ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 240
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
482-597 |
6.61e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 40.42 E-value: 6.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 482 AEQAATQLKVQLQEAERRWEEVQSYI--RKRTAEHEAAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMES 559
Cdd:COG1566 81 LQAALAQAEAQLAAAEAQLARLEAELgaEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEARAALDAA 160
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 1039745670 560 EQKRASKEESLQIQVQDILEQNE--ALKAQIQQFHSQIAA 597
Cdd:COG1566 161 QAQLEAAQAQLAQAQAGLREEEElaAAQAQVAQAEAALAQ 200
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
842-1212 |
6.68e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 6.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 842 EVLKEEIGNAQLEKAHQLSVTSQVQELQNLLRGKEEQVNSMKAALEDRDRDLRGRGTCAQVCSTPQ-FEELESVLKEKDN 920
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQeLEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 921 EIKRIEVKLKDTESDVSKMSELLKEVQE-----ENKFLKCQLSHQKHQQASFPSQEELQTVISEKEKEITDLCNELESLK 995
Cdd:COG4717 147 RLEELEERLEELRELEEELEELEAELAElqeelEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 996 NAVEH--QRKKNNERRQHVEAIELESKDLLKRLFPTVSVPSNLNYSEWLRGFEK--KAKACVAGTSDAEAVKVLEHRLKE 1071
Cdd:COG4717 227 EELEQleNELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFlvLGLLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1072 ASEMHTLLQLECEKYKSVLAE--------TEGILQKLQRSVEQEESKWKIKADESQRMIKQLRREREHL--------EME 1135
Cdd:COG4717 307 LQALPALEELEEEELEELLAAlglppdlsPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALlaeagvedEEE 386
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1136 LEKAEMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQN-----EELNLLKTQLNETHSKLQNEQTERKKVADDLHKAQ 1210
Cdd:COG4717 387 LRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeeleEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
..
gi 1039745670 1211 QS 1212
Cdd:COG4717 467 ED 468
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1068-1229 |
6.83e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 6.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1068 RLKEASEMHTLLQLECEKyksvlaetegiLQKLQRSVEQEESKWKIKADESQRMIKQLRRER--------EHLEMELEKA 1139
Cdd:COG4913 282 RLWFAQRRLELLEAELEE-----------LRAELARLEAELERLEARLDALREELDELEAQIrgnggdrlEQLEREIERL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 1140 EMERSTYVMEVRELKDLLTELQKKLDDSYSEAVRQNEELNLLKTQLNETHSKLQNEQTERKkvaDDLHKAQQSLNSIHSK 1219
Cdd:COG4913 351 ERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAE---AALRDLRRELRELEAE 427
|
170
....*....|.
gi 1039745670 1220 I-SLKAAGDTV 1229
Cdd:COG4913 428 IaSLERRKSNI 438
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
341-723 |
9.25e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 9.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 341 ERLLSAMKEDAAASKERC--KQLTQEMMTEkerssvvIARMKDRIGTLEKEHNIFQNKMhASYQETQQMQMKFQQVQEQM 418
Cdd:COG3096 285 ERALELRRELFGARRQLAeeQYRLVEMARE-------LEELSARESDLEQDYQAASDHL-NLVQTALRQQEKIERYQEDL 356
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 419 EAEIAHLKQENGILRDAVSNTTNQLESKQSAElnklrQDCGRLVSELNEKTGKL---QQEGVQKKNAEQAATQLKVQLQE 495
Cdd:COG3096 357 EELTERLEEQEEVVEEAAEQLAEAEARLEAAE-----EEVDSLKSQLADYQQALdvqQTRAIQYQQAVQALEKARALCGL 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 496 AERRWEEVQSYIrkrtAEHEAAQQDLQSkfvakenEVQSLHSKLTDTLVSKQQLEQ--RLMQLMESEQKRASKEESLQIQ 573
Cdd:COG3096 432 PDLTPENAEDYL----AAFRAKEQQATE-------EVLELEQKLSVADAARRQFEKayELVCKIAGEVERSQAWQTAREL 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 574 VQD------ILEQNEALKAQIQQFHSQIAAQTSASVLAEELHKVI--------------AEKDKQLKQTEDSLAN----- 628
Cdd:COG3096 501 LRRyrsqqaLAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIgqqldaaeeleellAELEAQLEELEEQAAEaveqr 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 629 -----EQDHLASKEEELKDVQNMNFLLKAEVQKLQALANEQAATAHEV-EKMQksihvkedkirlleEQLQHEVASKMEE 702
Cdd:COG3096 581 selrqQLEQLRARIKELAARAPAWLAAQDALERLREQSGEALADSQEVtAAMQ--------------QLLEREREATVER 646
|
410 420
....*....|....*....|.
gi 1039745670 703 LKILsEQNKALQSEVQKLQTA 723
Cdd:COG3096 647 DELA-ARKQALESQIERLSQP 666
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
392-1004 |
9.82e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.19 E-value: 9.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 392 IFQNKMHASYQETQQMQMKFQQVQEQMEA--EIAHLKQENGILRDAVSNTTNQLESKQSAELNKLRQDCGRLVSEL---- 465
Cdd:pfam10174 57 VLKEQYRVTQEENQHLQLTIQALQDELRAqrDLNQLLQQDFTTSPVDGEDKFSTPELTEENFRRLQSEHERQAKELfllr 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 466 --------------------NEKTGKL----QQEGVQKKN-------------AEQAATQLKVQLQEAERRWEEVQSYIR 508
Cdd:pfam10174 137 ktleemelrietqkqtlgarDESIKKLlemlQSKGLPKKSgeedwertrriaeAEMQLGHLEVLLDQKEKENIHLREELH 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 509 KRTAEHE--AAQQDLQSKFVAKENEVQSLHSKLTDTLVSKQQLEQRLMQLMESEQKRASKEESLQIQVQDILEQNEALKA 586
Cdd:pfam10174 217 RRNQLQPdpAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQ 296
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 587 QIQQFHSQIAA-QTSASVLAEELH------KVIAEKDKQLKQTEDSLANEQDHLASKEEELKDvqnmnfLLKAEVQKLQA 659
Cdd:pfam10174 297 ELSKKESELLAlQTKLETLTNQNSdckqhiEVLKESLTAKEQRAAILQTEVDALRLRLEEKES------FLNKKTKQLQD 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 660 LANEQAATAHEVEKMQKSIHVKEDKIRLLE---EQLQHEVASKMEELKILSEQNKALQSEVQKLQTAVSqqpnkdvveQM 736
Cdd:pfam10174 371 LTEEKSTLAGEIRDLKDMLDVKERKINVLQkkiENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALT---------TL 441
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 737 EKCIQEKDeklRTVEELLEtgliqvaTREEELSAIRTENSTLTREVQELKAKQSdqvsfvslieDLKRVIHEKDGQIKSV 816
Cdd:pfam10174 442 EEALSEKE---RIIERLKE-------QREREDRERLEELESLKKENKDLKEKVS----------ALQPELTEKESSLIDL 501
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 817 EELLEVELLKVANKEKTVQALKQEIEVLKEEIG--NAQLEKAHQLSVTSQVQ-ELQNLLRGKEEQVNsmkaaledRDRDL 893
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSLEIAVEQKKEECSklENQLKKAHNAEEAVRTNpEINDRIRLLEQEVA--------RYKEE 573
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039745670 894 RGRgtcaqvcSTPQFEELESVLKEKDNEIKRIEVKLKDTESDVSKMSELLKEVQEENKFLKCQLSHQKHQQASFPSQEEL 973
Cdd:pfam10174 574 SGK-------AQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRRED 646
|
650 660 670
....*....|....*....|....*....|.
gi 1039745670 974 QTVISEKEKEITDLCNELESLKNAVEHQRKK 1004
Cdd:pfam10174 647 NLADNSQQLQLEELMGALEKTRQELDATKAR 677
|
|
| |
