NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039738276|ref|XP_017170257|]
View 

SANT and BTB domain regulator of class switch recombination isoform X1 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
SANBR_BTB super family cl28778
SANT and BTB domain regulator of CSR, BTB domain; Class switch recombination (CSR) is the ...
 147-248 2.21e-42

SANT and BTB domain regulator of CSR, BTB domain; Class switch recombination (CSR) is the process by which B cells switch production from IgM/IgD to other immunoglobulin isotypes in the immune response process. This entry represents the BTB domain found at the N-terminal half of the protein SANT and BTB domain regulator of class switch recombination (SANBR, previously known as KIAA1841). This domain is responsible for the negative regulation of CSR.


The actual alignment was detected with superfamily member pfam11822:

Pssm-ID: 432102  Cd Length: 97  Bit Score: 148.78  E-value: 2.21e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738276 147 MVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLS---MDAQRWEEVDISVHCDVHIFNWLIKYVKRNTkeskdceiPAL 223
Cdd:pfam11822   1 VEITVCDEAKNLKRDFRCPLDLLETEMRYFEPYISryiSEAQRWPPVDIRVHCDVSIFDWLMNYVSGKA--------PKL 72

                          90       100
                  ....*....|....*....|....*
gi 1039738276 224 EPGNVISILISSEFLKMDSLVEQCI 248
Cdd:pfam11822  73 TPSNVVSILLSSNFLKMDQLVDNCL 97
 
Name Accession Description Interval E-value
SANBR_BTB pfam11822
SANT and BTB domain regulator of CSR, BTB domain; Class switch recombination (CSR) is the ...
 147-248 2.21e-42

SANT and BTB domain regulator of CSR, BTB domain; Class switch recombination (CSR) is the process by which B cells switch production from IgM/IgD to other immunoglobulin isotypes in the immune response process. This entry represents the BTB domain found at the N-terminal half of the protein SANT and BTB domain regulator of class switch recombination (SANBR, previously known as KIAA1841). This domain is responsible for the negative regulation of CSR.


Pssm-ID: 432102  Cd Length: 97  Bit Score: 148.78  E-value: 2.21e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738276 147 MVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLS---MDAQRWEEVDISVHCDVHIFNWLIKYVKRNTkeskdceiPAL 223
Cdd:pfam11822   1 VEITVCDEAKNLKRDFRCPLDLLETEMRYFEPYISryiSEAQRWPPVDIRVHCDVSIFDWLMNYVSGKA--------PKL 72

                          90       100
                  ....*....|....*....|....*
gi 1039738276 224 EPGNVISILISSEFLKMDSLVEQCI 248
Cdd:pfam11822  73 TPSNVVSILLSSNFLKMDQLVDNCL 97
PHA03098 PHA03098
kelch-like protein; Provisional
 166-256 2.63e-03

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 40.91  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738276 166 RDLLISEMKYFAeylSMDAQRWEEVDISVHCDVHIFNWLIKYVkrNTKeskdceIPALEPGNVISILISSEFLKMDSLVE 245
Cdd:PHA03098   27 KIILSSSSEYFK---KMFKNNFKENEINLNIDYDSFNEVIKYI--YTG------KINITSNNVKDILSIANYLIIDFLIN 95

                          90
                  ....*....|.
gi 1039738276 246 QCIQYCHKNMN 256
Cdd:PHA03098   96 LCINYIIKIID 106
 
Name Accession Description Interval E-value
SANBR_BTB pfam11822
SANT and BTB domain regulator of CSR, BTB domain; Class switch recombination (CSR) is the ...
 147-248 2.21e-42

SANT and BTB domain regulator of CSR, BTB domain; Class switch recombination (CSR) is the process by which B cells switch production from IgM/IgD to other immunoglobulin isotypes in the immune response process. This entry represents the BTB domain found at the N-terminal half of the protein SANT and BTB domain regulator of class switch recombination (SANBR, previously known as KIAA1841). This domain is responsible for the negative regulation of CSR.


Pssm-ID: 432102  Cd Length: 97  Bit Score: 148.78  E-value: 2.21e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738276 147 MVIHVCDEAKSLKEDFICPRDLLISEMKYFAEYLS---MDAQRWEEVDISVHCDVHIFNWLIKYVKRNTkeskdceiPAL 223
Cdd:pfam11822   1 VEITVCDEAKNLKRDFRCPLDLLETEMRYFEPYISryiSEAQRWPPVDIRVHCDVSIFDWLMNYVSGKA--------PKL 72

                          90       100
                  ....*....|....*....|....*
gi 1039738276 224 EPGNVISILISSEFLKMDSLVEQCI 248
Cdd:pfam11822  73 TPSNVVSILLSSNFLKMDQLVDNCL 97
PHA03098 PHA03098
kelch-like protein; Provisional
 166-256 2.63e-03

kelch-like protein; Provisional


Pssm-ID: 222983 [Multi-domain]  Cd Length: 534  Bit Score: 40.91  E-value: 2.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039738276 166 RDLLISEMKYFAeylSMDAQRWEEVDISVHCDVHIFNWLIKYVkrNTKeskdceIPALEPGNVISILISSEFLKMDSLVE 245
Cdd:PHA03098   27 KIILSSSSEYFK---KMFKNNFKENEINLNIDYDSFNEVIKYI--YTG------KINITSNNVKDILSIANYLIIDFLIN 95

                          90
                  ....*....|.
gi 1039738276 246 QCIQYCHKNMN 256
Cdd:PHA03098   96 LCINYIIKIID 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH