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Conserved domains on  [gi|1039737787|ref|XP_017170175|]
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cdc42 effector protein 4 isoform X2 [Mus musculus]

Protein Classification

PBD and BORG_CEP domain-containing protein( domain architecture ID 10466536)

PBD and BORG_CEP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
BORG_CEP pfam14957
Cdc42 effector; The Cdc42 effector (CEP) or binder of Rho GTPases (BORG) proteins are involved ...
 110-219 5.12e-20

Cdc42 effector; The Cdc42 effector (CEP) or binder of Rho GTPases (BORG) proteins are involved in the organization of the actin cytoskeleton. They may function as negative regulators of Rho GTPase signaling.


:

Pssm-ID: 464403  Cd Length: 121  Bit Score: 84.45  E-value: 5.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039737787 110 FVKNAMSLPQLNEKEAAEK-------DSSKLPKSLSSSPVKKADARDGgpKSPHRNGATGPHSPDPLLDEQAFGDLMDLP 182
Cdd:pfam14957   1 LLKNAISLPQLNEGGSQALtlpklppKPPREPKSLSSSPEKKSLYEDG--PRADSTNSAPLESPTEKLSERSFGSLTDLS 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1039737787 183 IMPKV------SYGLKHAESILSFHIDLGPSMLGDVLSIMDKD 219
Cdd:pfam14957  79 SESPKysdrseSPGLKRAESLLSLHLDLGPSILGDVLSIMDKY 121
PBD pfam00786
P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also ...
 26-83 5.00e-12

P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).


:

Pssm-ID: 395634  Cd Length: 59  Bit Score: 60.40  E-value: 5.00e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039737787  26 MISAPlGDFRHTMHVGRAGDAFGDTSFLTSKAREADDESL--DEQASASKLSLLSRKFRG 83
Cdd:pfam00786   1 MISAP-TNFKHTVHVGFDPDTGFFTGLPPEWAKLLDSSGIteDEQKENPKAVLDVLKFYS 59
 
Name Accession Description Interval E-value
BORG_CEP pfam14957
Cdc42 effector; The Cdc42 effector (CEP) or binder of Rho GTPases (BORG) proteins are involved ...
 110-219 5.12e-20

Cdc42 effector; The Cdc42 effector (CEP) or binder of Rho GTPases (BORG) proteins are involved in the organization of the actin cytoskeleton. They may function as negative regulators of Rho GTPase signaling.


Pssm-ID: 464403  Cd Length: 121  Bit Score: 84.45  E-value: 5.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039737787 110 FVKNAMSLPQLNEKEAAEK-------DSSKLPKSLSSSPVKKADARDGgpKSPHRNGATGPHSPDPLLDEQAFGDLMDLP 182
Cdd:pfam14957   1 LLKNAISLPQLNEGGSQALtlpklppKPPREPKSLSSSPEKKSLYEDG--PRADSTNSAPLESPTEKLSERSFGSLTDLS 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1039737787 183 IMPKV------SYGLKHAESILSFHIDLGPSMLGDVLSIMDKD 219
Cdd:pfam14957  79 SESPKysdrseSPGLKRAESLLSLHLDLGPSILGDVLSIMDKY 121
PBD pfam00786
P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also ...
 26-83 5.00e-12

P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).


Pssm-ID: 395634  Cd Length: 59  Bit Score: 60.40  E-value: 5.00e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039737787  26 MISAPlGDFRHTMHVGRAGDAFGDTSFLTSKAREADDESL--DEQASASKLSLLSRKFRG 83
Cdd:pfam00786   1 MISAP-TNFKHTVHVGFDPDTGFFTGLPPEWAKLLDSSGIteDEQKENPKAVLDVLKFYS 59
PBD smart00285
P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also ...
 27-53 2.63e-03

P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).


Pssm-ID: 197628  Cd Length: 36  Bit Score: 35.26  E-value: 2.63e-03
                           10        20
                   ....*....|....*....|....*....
gi 1039737787   27 ISAPLgDFRHTMHVGRAG--DAFGDTSFL 53
Cdd:smart00285   1 ISTPT-NFKHIAHVGFDGqtGGFTGLPTE 28
CRIB cd00132
PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; ...
 25-55 2.98e-03

PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.


Pssm-ID: 238077  Cd Length: 42  Bit Score: 35.11  E-value: 2.98e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039737787  25 EMISAPLgDFRHTMHVGRAGDAFGDTSFLTS 55
Cdd:cd00132     1 MEISTPT-DFKHISHVGWDGVGFDGANLPPD 30
 
Name Accession Description Interval E-value
BORG_CEP pfam14957
Cdc42 effector; The Cdc42 effector (CEP) or binder of Rho GTPases (BORG) proteins are involved ...
 110-219 5.12e-20

Cdc42 effector; The Cdc42 effector (CEP) or binder of Rho GTPases (BORG) proteins are involved in the organization of the actin cytoskeleton. They may function as negative regulators of Rho GTPase signaling.


Pssm-ID: 464403  Cd Length: 121  Bit Score: 84.45  E-value: 5.12e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039737787 110 FVKNAMSLPQLNEKEAAEK-------DSSKLPKSLSSSPVKKADARDGgpKSPHRNGATGPHSPDPLLDEQAFGDLMDLP 182
Cdd:pfam14957   1 LLKNAISLPQLNEGGSQALtlpklppKPPREPKSLSSSPEKKSLYEDG--PRADSTNSAPLESPTEKLSERSFGSLTDLS 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1039737787 183 IMPKV------SYGLKHAESILSFHIDLGPSMLGDVLSIMDKD 219
Cdd:pfam14957  79 SESPKysdrseSPGLKRAESLLSLHLDLGPSILGDVLSIMDKY 121
PBD pfam00786
P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also ...
 26-83 5.00e-12

P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).


Pssm-ID: 395634  Cd Length: 59  Bit Score: 60.40  E-value: 5.00e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039737787  26 MISAPlGDFRHTMHVGRAGDAFGDTSFLTSKAREADDESL--DEQASASKLSLLSRKFRG 83
Cdd:pfam00786   1 MISAP-TNFKHTVHVGFDPDTGFFTGLPPEWAKLLDSSGIteDEQKENPKAVLDVLKFYS 59
PBD smart00285
P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also ...
 27-53 2.63e-03

P21-Rho-binding domain; Small domains that bind Cdc42p- and/or Rho-like small GTPases. Also known as the Cdc42/Rac interactive binding (CRIB).


Pssm-ID: 197628  Cd Length: 36  Bit Score: 35.26  E-value: 2.63e-03
                           10        20
                   ....*....|....*....|....*....
gi 1039737787   27 ISAPLgDFRHTMHVGRAG--DAFGDTSFL 53
Cdd:smart00285   1 ISTPT-NFKHIAHVGFDGqtGGFTGLPTE 28
CRIB cd00132
PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; ...
 25-55 2.98e-03

PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. CRIB-containing effector proteins are functionally diverse and include serine/threonine kinases, tyrosine kinases, actin-binding proteins, and adapter molecules.


Pssm-ID: 238077  Cd Length: 42  Bit Score: 35.11  E-value: 2.98e-03
                          10        20        30
                  ....*....|....*....|....*....|.
gi 1039737787  25 EMISAPLgDFRHTMHVGRAGDAFGDTSFLTS 55
Cdd:cd00132     1 MEISTPT-DFKHISHVGWDGVGFDGANLPPD 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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