|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
19-369 |
4.94e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 101.55 E-value: 4.94e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 19 QSLQTRVLELQQQLAVavaadHKKDLMIEQLDKTLARVVEGWNRHEAERTEvLRGLQEERQAAELTRSKQQETVTRLEQS 98
Cdd:COG1196 216 RELKEELKELEAELLL-----LKLRELEAELEELEAELEELEAELEELEAE-LAELEAELEELRLELEELELELEEAQAE 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 99 LSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAWIK 178
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 179 QEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFAL------LQTEVRRLEGDLDTVRRERDALQLEMSLVQA 252
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALlerlerLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 253 RYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERQQQVA 332
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVL 529
|
330 340 350
....*....|....*....|....*....|....*....
gi 1039736647 333 Q--DYELRLAREQARVRDLKSGNQQLEEQRAELVERLQA 369
Cdd:COG1196 530 IgvEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
71-414 |
1.24e-18 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 90.77 E-value: 1.24e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 71 LRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDE 150
Cdd:COG1196 202 LEPLERQAEKAERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 151 ARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAawetQQQFALLQTEVRRLE 230
Cdd:COG1196 282 ELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEEL----EEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 231 GDLDTVRRERDALQLEMSLVQARYESQRiqmESELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQEL 310
Cdd:COG1196 358 AELAEAEEALLEAEAELAEAEEELEELA---EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELE 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 311 AAQLAQFKVEMADREERQQQvaqdyELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEANQLLSTTLLPPN 390
Cdd:COG1196 435 EEEEEEEEALEEAAEEEAEL-----EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340
....*....|....*....|....
gi 1039736647 391 PQAPLAEPSSPGpLEPEKGERRTW 414
Cdd:COG1196 510 VKAALLLAGLRG-LAGAVAVLIGV 532
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-352 |
5.63e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 82.29 E-value: 5.63e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGL---QEERQAAELTRSKQQET 91
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIarlEERRRELEERLEELEEE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 92 VTRLEQSLSEAMEALSR-EQEGARLQQREKEALEEERQALTLRLEVEQQQcRTLQEERDEARAGQLSEHRKLEALQVALQ 170
Cdd:COG1196 325 LAELEEELEELEEELEElEEELEEAEEELEEAEAELAEAEEALLEAEAEL-AEAEEELEELAEELLEALRAAAELAAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 171 EERQAwikQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLV 250
Cdd:COG1196 404 ELEEA---EEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 251 QARyesqriqmesELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERQQQ 330
Cdd:COG1196 481 ELL----------EELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN 550
|
330 340
....*....|....*....|..
gi 1039736647 331 VAQDYELRLAREQARVRDLKSG 352
Cdd:COG1196 551 IVVEDDEVAAAAIEYLKAAKAG 572
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
74-381 |
1.54e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.79 E-value: 1.54e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 74 LQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQA----LTLRLEVEQQQCRTLQEERD 149
Cdd:TIGR02168 170 YKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELelalLVLRLEELREELEELQEELK 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 150 EARagqlSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAqaawETQQQFALLQTEVRRL 229
Cdd:TIGR02168 250 EAE----EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQ----ILRERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 230 EGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQleqrvtERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQE 309
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAEL------EELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039736647 310 --LAAQLAQFKVEMADREERQQQVAQDYE-LRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEANQL 381
Cdd:TIGR02168 396 asLNNEIERLEARLERLEDRRERLQQEIEeLLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREEL 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-378 |
1.87e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 1.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQQETVTR 94
Cdd:COG1196 259 EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEE 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 95 LEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQqcrtLQEERDEARAGQLSEHRKLEALQVALQEERQ 174
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE----LAEELLEALRAAAELAAQLEELEEAEEALLE 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 175 AWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAwETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARY 254
Cdd:COG1196 415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA-ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 255 ESQRiqmesELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERQQQVAQD 334
Cdd:COG1196 494 LLLL-----EAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA 568
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 1039736647 335 YEL-RLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEA 378
Cdd:COG1196 569 AKAgRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
98-386 |
4.61e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 76.25 E-value: 4.61e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 98 SLSEAMEALSREQEGARLQQrEKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAwI 177
Cdd:TIGR02168 665 SAKTNSSILERRREIEELEE-KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE-V 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 178 KQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQ 257
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 258 RIQMESEL--AVQLEQRVTERLAEAQENSLRQAASlrDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERqqqvaqdy 335
Cdd:TIGR02168 823 RERLESLErrIAATERRLEDLEEQIEELSEDIESL--AAEIEELEELIEELESELEALLNERASLEEALALL-------- 892
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1039736647 336 ELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMlQAHWEEANQLLSTTL 386
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQL-ELRLEGLEVRIDNLQ 942
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
12-385 |
9.98e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.97 E-value: 9.98e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 12 QHCERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEV---LRGLQEERQAAELTRSKQ 88
Cdd:COG1196 263 AELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELeeeLAELEEELEELEEELEEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 89 QETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVA 168
Cdd:COG1196 343 EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEE 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 169 LQEERQAwikQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAW--ETQQQFALLQTEVRRLEGDLDTVRRERDALQLE 246
Cdd:COG1196 423 LEELEEA---LAELEEEEEEEEEALEEAAEEEAELEEEEEALLELlaELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 247 MSLVQARYESQRIQMESEL------AVQLEQRVTERLAEAQENSLrqAASLRDHHRKQLQELSgQHQQELAAQLAQFKVE 320
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGlrglagAVAVLIGVEAAYEAALEAAL--AAALQNIVVEDDEVAA-AAIEYLKAAKAGRATF 576
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039736647 321 MADREERQQQVAQDYELRLAREQARV-RDLKSGNQQLEEQRAELVERLQAMLQAHWEEANQLLSTT 385
Cdd:COG1196 577 LPLDKIRARAALAAALARGAIGAAVDlVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-382 |
1.52e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 1.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAEltrSKQQETVTR 94
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE---ELAEELLEA 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 95 LEQSLSEAMEALSREQEGARLQQREKEALEEERQALT--LRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEE 172
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEalAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEE 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 173 RQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQA-AWETQQQFALLQTEVRRLEGDLDTVRRE-RDALQLEMSLV 250
Cdd:COG1196 472 AALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVkAALLLAGLRGLAGAVAVLIGVEAAYEAAlEAALAAALQNI 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 251 QARYESQRIQMESELAVQLEQRVT-----------------ERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQELAAQ 313
Cdd:COG1196 552 VVEDDEVAAAAIEYLKAAKAGRATflpldkiraraalaaalARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAAR 631
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039736647 314 LAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEANQLL 382
Cdd:COG1196 632 LEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
13-358 |
7.31e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.40 E-value: 7.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 13 HCERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLarvvEGWNRHEAERTEVLRGLQEERQAAELTRSKQQETV 92
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL----EELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 93 TRLEQSLSEAMEALSREQEGARLQQREKEALE-------EERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEAL 165
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEaqieqlkEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 166 QVALQEERQAWIKQEHQLK------ERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRE 239
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIEslaaeiEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRE 916
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 240 RDALQLEMSLVQARYesQRIQMEselavqlEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSgQHQQELAAQLAQF-K 318
Cdd:TIGR02168 917 LEELREKLAQLELRL--EGLEVR-------IDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR-RRLKRLENKIKELgP 986
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1039736647 319 VEMADREErqqqvAQDYELRLAREQARVRDLKSGNQQLEE 358
Cdd:TIGR02168 987 VNLAAIEE-----YEELKERYDFLTAQKEDLTEAKETLEE 1021
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
15-370 |
1.23e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.51 E-value: 1.23e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQQETVTR 94
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 95 LEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQ-------------------CRTLQEER-DEARAG 154
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYegflegvkaalllaglrglAGAVAVLIgVEAAYE 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 155 QLSEHRKLEALQVALQEERQAWIKQEHQLKERL--------------QALQEEGQAQLEREKGNSQREAQAAWETQQQFA 220
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKagratflpldkiraRAALAAALARGAIGAAVDLVASDLREADARYYV 617
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 221 LLQTEV------------RRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQA 288
Cdd:COG1196 618 LGDTLLgrtlvaarleaaLRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 289 ASLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQ 368
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIE 777
|
..
gi 1039736647 369 AM 370
Cdd:COG1196 778 AL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
46-366 |
3.70e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 3.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 46 IEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAElTRSKQQETVTRLEQSLSEAMEALSREQEGArlqQREKEALEE 125
Cdd:TIGR02169 683 LEGLKRELSSLQSELRRIENRLDELSQELSDASRKIG-EIEKEIEQLEQEEEKLKERLEELEEDLSSL---EQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 126 ERQALTLRLEVEQQQCRTLQEERD--EARAGQlSEHRKLEALQVALQEERQAW----------IKQEHQLKERLQALQEE 193
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNdlEARLSH-SRIPEIQAELSKLEEEVSRIearlreieqkLNRLTLEKEYLEKEIQE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 194 GQAQLE--REKGNSQREAQAAW-----ETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMEsela 266
Cdd:TIGR02169 838 LQEQRIdlKEQIKSIEKEIENLngkkeELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIE---- 913
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 267 vQLEQRVtERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQE-LAAQLAQFKVEMADREERQQQVAQDYElrlaREQAR 345
Cdd:TIGR02169 914 -KKRKRL-SELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEdVQAELQRVEEEIRALEPVNMLAIQEYE----EVLKR 987
|
330 340
....*....|....*....|.
gi 1039736647 346 VRDLKSGNQQLEEQRAELVER 366
Cdd:TIGR02169 988 LDELKEKRAKLEEERKAILER 1008
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
46-357 |
1.71e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 1.71e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 46 IEQLDKTLArvVEGWNRHEAERTEvlrgLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEE 125
Cdd:TIGR02168 222 LRELELALL--VLRLEELREELEE----LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 126 ERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEalqvALQEERQAWIKQEHQLKERLQALQEEGQaqlerEKGNS 205
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLD----ELAEELAELEEKLEELKEELESLEAELE-----ELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 206 QREAQAAWETQQQfallqtevrrlegDLDTVRRERDALQLEMSLVQARYESQRIQMES--ELAVQLEQRVTERLAEAQEN 283
Cdd:TIGR02168 367 LEELESRLEELEE-------------QLETLRSKVAQLELQIASLNNEIERLEARLERleDRRERLQQEIEELLKKLEEA 433
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039736647 284 SLRQAASLRDHHRKQLQELSGQHqqelaAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLE 357
Cdd:TIGR02168 434 ELKELQAELEELEEELEELQEEL-----ERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
47-267 |
4.72e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 66.48 E-value: 4.72e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 47 EQLDkTLARVVEGWNRHEAERTEvLRGLQEERQAAELTRSKQ-----QETVTRLEQSLSEAMEALSREQEGARLQQREKE 121
Cdd:COG4913 249 EQIE-LLEPIRELAERYAAARER-LAELEYLRAALRLWFAQRrlellEAELEELRAELARLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 122 ALEEERQALTL-RLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQler 200
Cdd:COG4913 327 ELEAQIRGNGGdRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL--- 403
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039736647 201 ekgnsqreaqaawetQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAV 267
Cdd:COG4913 404 ---------------EEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEALGL 455
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
88-327 |
7.64e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.40 E-value: 7.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 88 QQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARagqlsehRKLEALQV 167
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE-------AELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 168 ALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWetqqQFALLQTEVRRLEGDLDTVRRERDALQlem 247
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVR----RLQYLKYLAPARREQAEELRADLAELA--- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 248 sLVQARYESQRIQMESELAVQLEQRVT-ERLAEAQENSLRQAASLRDHHRKQLQELSGQhQQELAAQLAQFKVEMADREE 326
Cdd:COG4942 164 -ALRAELEAERAELEALLAELEEERAAlEALKAERQKLLARLEKELAELAAELAELQQE-AEELEALIARLEAEAAAAAE 241
|
.
gi 1039736647 327 R 327
Cdd:COG4942 242 R 242
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
61-381 |
1.25e-10 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 65.06 E-value: 1.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 61 NRHEAERTEV---LRGLQEERQAAELTRSKQQETVTRLEQSLsEAMEALsrEQEGARLQQrEKEALEEERQALTLRLEVE 137
Cdd:PRK02224 209 NGLESELAELdeeIERYEEQREQARETRDEADEVLEEHEERR-EELETL--EAEIEDLRE-TIAETEREREELAEEVRDL 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 138 QQQCRTLQEERDEARAGQLSEhrklEALQVALQEERQAWIKQEHQLKERLQALQEEGQA---QLEREKGNSQREAQAAWE 214
Cdd:PRK02224 285 RERLEELEEERDDLLAEAGLD----DADAEAVEARREELEDRDEELRDRLEECRVAAQAhneEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 215 TQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQME-----SELAVQLEQRVTERLAEAQ------EN 283
Cdd:PRK02224 361 LREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGnaedfLEELREERDELREREAELEatlrtaRE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 284 SLRQAASLRDH--------------HRKQLQELSGQhQQELAAQLAQFKVEMADREERQQQVAQDYElrLAREQARVRDL 349
Cdd:PRK02224 441 RVEEAEALLEAgkcpecgqpvegspHVETIEEDRER-VEELEAELEDLEEEVEEVEERLERAEDLVE--AEDRIERLEER 517
|
330 340 350
....*....|....*....|....*....|..
gi 1039736647 350 KSGNQQLEEQRAELVERLQAMLQAHWEEANQL 381
Cdd:PRK02224 518 REDLEELIAERRETIEEKRERAEELRERAAEL 549
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-380 |
2.29e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 64.39 E-value: 2.29e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 64 EAERTEVLRGLQEERQAAELTRSKQQETvtrleqslSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQ---- 139
Cdd:PTZ00121 1442 EAKKADEAKKKAEEAKKAEEAKKKAEEA--------KKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkad 1513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 140 QCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAwetqqqf 219
Cdd:PTZ00121 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA------- 1586
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 220 alLQTEVRRLEGDLDTVRRERdalqlEMSLVQARY-ESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLRdhhrkQ 298
Cdd:PTZ00121 1587 --KKAEEARIEEVMKLYEEEK-----KMKAEEAKKaEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELK-----K 1654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 299 LQELSGQHQQELA--AQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQlEEQRAELVERLQAMLQAHWE 376
Cdd:PTZ00121 1655 AEEENKIKAAEEAkkAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE-EKKKAEELKKAEEENKIKAE 1733
|
....
gi 1039736647 377 EANQ 380
Cdd:PTZ00121 1734 EAKK 1737
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
146-372 |
3.21e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 63.78 E-value: 3.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 146 EERD-EARAGQLSEH-RKLEALQVALQEERQawikQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQ 223
Cdd:COG4913 219 EEPDtFEAADALVEHfDDLERAHEALEDARE----QIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 224 TEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQLEQrvterlAEAQENSLRQAASLRDHHRKQLQELS 303
Cdd:COG4913 295 AELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ------LEREIERLERELEERERRRARLEALL 368
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039736647 304 GQHQQELAAQLAQFkvemADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQ 372
Cdd:COG4913 369 AALGLPLPASAEEF----AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
43-381 |
4.20e-10 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 63.44 E-value: 4.20e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 43 DLMIEQLDKTLARVVEGWNRHEAERTEVLRG---LQEERQAAELTRSKQQETVTR--------------LEQSLSEAMEA 105
Cdd:PRK04863 257 DLFKHLITESTNYVAADYMRHANERRVHLEEaleLRRELYTSRRQLAAEQYRLVEmarelaelneaesdLEQDYQAASDH 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 106 LSREQEGARLQQREKEAlEEERQALTLRLEvEQQQCRTL-QEERDEARA-------------GQLSEH-RKLEALQ---- 166
Cdd:PRK04863 337 LNLVQTALRQQEKIERY-QADLEELEERLE-EQNEVVEEaDEQQEENEAraeaaeeevdelkSQLADYqQALDVQQtrai 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 167 -----VALQEERQAWIKQEHQLKERLQALQEEGQAQLE------REKGNSQREAQAAwetQQQFALLQTEVRRLEGDLDT 235
Cdd:PRK04863 415 qyqqaVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQeateelLSLEQKLSVAQAA---HSQFEQAYQLVRKIAGEVSR 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 236 VRRERDALQLEmslvqARYESQRIQmeselAVQLEQRvterlaEAQENSLRQAASLRDHHRKQLQELSGQHQQEL--AAQ 313
Cdd:PRK04863 492 SEAWDVARELL-----RRLREQRHL-----AEQLQQL------RMRLSELEQRLRQQQRAERLLAEFCKRLGKNLddEDE 555
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039736647 314 LAQFKVEM-ADREERQQQVAQDYELRLAREQARvrdlksgnQQLEEQRAELVERLQAMLQAHwEEANQL 381
Cdd:PRK04863 556 LEQLQEELeARLESLSESVSEARERRMALRQQL--------EQLQARIQRLAARAPAWLAAQ-DALARL 615
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
66-418 |
1.06e-09 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 61.68 E-value: 1.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 66 ERTEVLRGLQE-ERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEgarlqqreKEALEEERQALTLRLEveqQQCRTL 144
Cdd:pfam17380 294 EKMEQERLRQEkEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQE--------RMAMERERELERIRQE---ERKREL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 145 QEERDEARAGQLSEHRKLEALQValqeERQawiKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQT 224
Cdd:pfam17380 363 ERIRQEEIAMEISRMRELERLQM----ERQ---QKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQR 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 225 EVRRLEGDldtvrRERdalqlEMSLVQARYESQRIQMEsELAVQLEQRVTERLAEAQENSLRQAAslRDHHRKQLQELSG 304
Cdd:pfam17380 436 EVRRLEEE-----RAR-----EMERVRLEEQERQQQVE-RLRQQEEERKRKKLELEKEKRDRKRA--EEQRRKILEKELE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 305 QHQQELAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVE---RLQAMlqahwEEANQL 381
Cdd:pfam17380 503 ERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEersRLEAM-----EREREM 577
|
330 340 350
....*....|....*....|....*....|....*..
gi 1039736647 382 LSTTLLPPNPQAPLAEPSSPGPLEPEKGERRTWAMPP 418
Cdd:pfam17380 578 MRQIVESEKARAEYEATTPITTIKPIYRPRISEYQPP 614
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
62-383 |
1.77e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.14 E-value: 1.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 62 RHEAERTEVLRGLQEERQAAELtrskqQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQC 141
Cdd:pfam02463 154 RRLEIEEEAAGSRLKRKKKEAL-----KKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLY 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 142 ---RTLQEERDEARAGQLSEHRKLEALQVALQEERQAWIKQEHQ---LKERLQALQEEGQAQLEREKGNSQREA----QA 211
Cdd:pfam02463 229 ldyLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKenkEEEKEKKLQEEELKLLAKEEEELKSELlkleRR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 212 AWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQL--EQRVTERLAEAQENSLRQAA 289
Cdd:pfam02463 309 KVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEklEQLEEELLAKKKLESERLSS 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 290 SLRDHHRKQLQELSGQHQQELAAQLAQfKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQA 369
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQLLLELAR-QLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL 467
|
330
....*....|....
gi 1039736647 370 MLQAHWEEANQLLS 383
Cdd:pfam02463 468 KKSEDLLKETQLVK 481
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
10-381 |
4.40e-09 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 59.85 E-value: 4.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 10 SFQHCERHIQSLQTRVLELQQQLAVAVAAdhkKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAEltrskqq 89
Cdd:pfam12128 259 RLSHLHFGYKSDETLIASRQEERQETSAE---LNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALE------- 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 90 etvTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALT------------LRLEVEQQQCRTLQEERDEARAGQLS 157
Cdd:pfam12128 329 ---DQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTgkhqdvtakynrRRSKIKEQNNRDIAGIKDKLAKIREA 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 158 EHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNsQREAQAAWETQQQFALLQTEVRRLEGDLDTVR 237
Cdd:pfam12128 406 RDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLR-LNQATATPELLLQLENFDERIERAREEQEAAN 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 238 RERDALQLEMSLVQARYESQRIQMESELAVQLEQRvtERLAEAQENSLRQAASLRDHHRKQLQELSgQHQQELA--AQLA 315
Cdd:pfam12128 485 AEVERLQSELRQARKRRDQASEALRQASRRLEERQ--SALDELELQLFPQAGTLLHFLRKEAPDWE-QSIGKVIspELLH 561
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039736647 316 QFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEANQL 381
Cdd:pfam12128 562 RTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQL 627
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
63-381 |
8.45e-09 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 59.20 E-value: 8.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 63 HEAERTEVLRGLQEERQAAELTR---SKQQETVTRLEQSLSEAMEALSREQEGARLQ---QREKEALEEerqaLTLRLEV 136
Cdd:COG3096 290 LRRELFGARRQLAEEQYRLVEMArelEELSARESDLEQDYQAASDHLNLVQTALRQQekiERYQEDLEE----LTERLEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 137 EQQQCRTLQEERDEARA-------------GQLSEH-RKLEALQ---VALQEERQAWIKQEHQL----------KERLQA 189
Cdd:COG3096 366 QEEVVEEAAEQLAEAEArleaaeeevdslkSQLADYqQALDVQQtraIQYQQAVQALEKARALCglpdltpenaEDYLAA 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 190 LQEEGQAQLEREKGNSQREAQAAwETQQQFALLQTEVRRLEGDLDTVRRERDALQLemslvQARYESQRIQMESELAVQL 269
Cdd:COG3096 446 FRAKEQQATEEVLELEQKLSVAD-AARRQFEKAYELVCKIAGEVERSQAWQTAREL-----LRRYRSQQALAQRLQQLRA 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 270 EQRVTERLAEAQENSLRQAASLRDHHRKQLQelsgqHQQELAAQLAQFKvemADREERQQQVAQDYELRLAREQARvrdl 349
Cdd:COG3096 520 QLAELEQRLRQQQNAERLLEEFCQRIGQQLD-----AAEELEELLAELE---AQLEELEEQAAEAVEQRSELRQQL---- 587
|
330 340 350
....*....|....*....|....*....|..
gi 1039736647 350 ksgnQQLEEQRAELVERLQAMLQAHwEEANQL 381
Cdd:COG3096 588 ----EQLRARIKELAARAPAWLAAQ-DALERL 614
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
62-312 |
1.10e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 58.60 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 62 RHEAERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQ-----REKEALEEERQALTLRLEV 136
Cdd:pfam17380 341 RMAMERERELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQeleaaRKVKILEEERQRKIQQQKV 420
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 137 EQQQCRTLQEERDEARAGQLSEHRKLEALQVALQE-ERQAWIKQEHQlkerlqalQEEGQAQLEREKGNSQREAQAAWET 215
Cdd:pfam17380 421 EMEQIRAEQEEARQREVRRLEEERAREMERVRLEEqERQQQVERLRQ--------QEEERKRKKLELEKEKRDRKRAEEQ 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 216 QQQfaLLQTEVRRLEGDLDTVRRERDALQLEMSLVQARY--ESQRIQMESELAVQLE----QRVTERLAEAQENSLRQAA 289
Cdd:pfam17380 493 RRK--ILEKELEERKQAMIEEERKRKLLEKEMEERQKAIyeEERRREAEEERRKQQEmeerRRIQEQMRKATEERSRLEA 570
|
250 260
....*....|....*....|...
gi 1039736647 290 SLRDHHRKQLQELSGQHQQELAA 312
Cdd:pfam17380 571 MEREREMMRQIVESEKARAEYEA 593
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
117-369 |
2.54e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 2.54e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 117 QREKEALEEERQALTLRLEVEQQQCRTLQEERDEARagqlsehRKLEALQvALQEERQAWIKQEhQLKERLQALQEEgQA 196
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQ-------ERREALQ-RLAEYSWDEIDVA-SAEREIAELEAE-LE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 197 QLErekgnsqreaqaawETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQ----------MESELA 266
Cdd:COG4913 679 RLD--------------ASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEldelqdrleaAEDLAR 744
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 267 VQLEQRVTERLAEA-QENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFK-----------VEMADREERQQQVAQD 334
Cdd:COG4913 745 LELRALLEERFAAAlGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNrewpaetadldADLESLPEYLALLDRL 824
|
250 260 270
....*....|....*....|....*....|....*
gi 1039736647 335 YELRLAREQARVRDLKsgNQQLEEQRAELVERLQA 369
Cdd:COG4913 825 EEDGLPEYEERFKELL--NENSIEFVADLLSKLRR 857
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
15-269 |
4.64e-08 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 4.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLA--RVvegwnRHEAERTEVLRGLQEERQAAELTRSKQQETV 92
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKneRV-----RQELEAARKVKILEEERQRKIQQQKVEMEQI 425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 93 tRLEQSLSEAMEALSREQEGARLQQR-EKEALEEERQALTLRLEVEQQQCRTLQEERDEaRAGQLSEHRKLEALQVALQE 171
Cdd:pfam17380 426 -RAEQEEARQREVRRLEEERAREMERvRLEEQERQQQVERLRQQEEERKRKKLELEKEK-RDRKRAEEQRRKILEKELEE 503
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 172 ERQAWIKQ-------EHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEgdldtvrrerdALQ 244
Cdd:pfam17380 504 RKQAMIEEerkrkllEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLE-----------AME 572
|
250 260
....*....|....*....|....*
gi 1039736647 245 LEMSLVQARYESQRIQMESELAVQL 269
Cdd:pfam17380 573 REREMMRQIVESEKARAEYEATTPI 597
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
12-212 |
5.81e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.46 E-value: 5.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 12 QHCERHIQSLQT-RVLELQQQLAVAVAADHKKDLMIEQLDKtlarvvegwNRHEAERtevlrgLQEERQAAELTRSKQQE 90
Cdd:COG4913 259 ELAERYAAARERlAELEYLRAALRLWFAQRRLELLEAELEE---------LRAELAR------LEAELERLEARLDALRE 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 91 TVTRLEQSLseamealsREQEGARLQQ--REKEALEEERQALTLRLEVEQQQCRTLQEERDEARAG------QLSEHR-K 161
Cdd:COG4913 324 ELDELEAQI--------RGNGGDRLEQleREIERLERELEERERRRARLEALLAALGLPLPASAEEfaalraEAAALLeA 395
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039736647 162 LEALQVALQEERQAWIKQEHQLKERLQALQEEgQAQLEREKGNSQREAQAA 212
Cdd:COG4913 396 LEEELEALEEALAEAEAALRDLRRELRELEAE-IASLERRKSNIPARLLAL 445
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
14-246 |
9.02e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 9.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 14 CERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLAR-------VVEGWNRHEAERTEVLRGLQEERQAAELTRS 86
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkrrdkLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 87 KQQETVTRLEQsLSEAMEALSREQEgaRLQQrEKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQ 166
Cdd:TIGR02169 386 ELKDYREKLEK-LKREINELKRELD--RLQE-ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 167 VALQEERQawikQEHQLKERLQALQEEgQAQLEREKGNSQREAQAAWETQQQFALLQTEVR-RLEGDLDTVR-----RER 240
Cdd:TIGR02169 462 ADLSKYEQ----ELYDLKEEYDRVEKE-LSKLQRELAEAEAQARASEERVRGGRAVEEVLKaSIQGVHGTVAqlgsvGER 536
|
....*.
gi 1039736647 241 DALQLE 246
Cdd:TIGR02169 537 YATAIE 542
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
58-366 |
9.91e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 9.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 58 EGWNRHEAERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSE---AMEALSREQEGARLQQREKEALEEERQALTLRL 134
Cdd:PTZ00121 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkkADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 135 EVEQ-QQCRTLQEERDEARAG-----QLSEHRKLEALQVALQEERQAwikQEHQLKERLQALQEEGQAQLEREKGNSQRE 208
Cdd:PTZ00121 1426 KAEEkKKADEAKKKAEEAKKAdeakkKAEEAKKAEEAKKKAEEAKKA---DEAKKKAEEAKKADEAKKKAEEAKKKADEA 1502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 209 AQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSlvQARYESQRIQMESELAVQLEQRVTERLAEAQEN---SL 285
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA--EEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknmAL 1580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 286 RQAASLRDHHRKQLQELSGQHQQELA--------AQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLE 357
Cdd:PTZ00121 1581 RKAEEAKKAEEARIEEVMKLYEEEKKmkaeeakkAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
|
....*....
gi 1039736647 358 EQRAELVER 366
Cdd:PTZ00121 1661 IKAAEEAKK 1669
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
160-369 |
1.30e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 160 RKLEALQVALQEERQAWIKQEHQLKERLQALQeegqaQLEREKGNSQREAQaawETQQQFALLQTEVRRLEGDLDTVRRE 239
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLA-----ALERRIAALARRIR---ALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 240 RDALQLEMS-LVQARYESQRIQ-----MESELAVQLEQRVT--ERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQ--E 309
Cdd:COG4942 99 LEAQKEELAeLLRALYRLGRQPplallLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAELAALRAELEAERAEleA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 310 LAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQA 369
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
88-377 |
5.11e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 53.44 E-value: 5.11e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 88 QQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQA-------LTLRLEVEQQQCRTLQEERDEARAGQLSEHR 160
Cdd:pfam02463 140 QGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEEtenlaelIIDLEELKLQELKLKEQAKKALEYYQLKEKL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 161 KLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNS----QREAQAAWETQQQ-------------FALLQ 223
Cdd:pfam02463 220 ELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEeklaQVLKENKEEEKEKklqeeelkllakeEEELK 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 224 TEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELS 303
Cdd:pfam02463 300 SELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK 379
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039736647 304 GQHQQELAAQLAQFKVEMADREERQQQV-AQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEE 377
Cdd:pfam02463 380 KLESERLSSAAKLKEEELELKSEEEKEAqLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELE 454
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
55-243 |
7.61e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 7.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 55 RVVEGWNRHEAERTEVLRGLQEERQA-----------AELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEAL 123
Cdd:PTZ00121 1564 KKAEEAKKAEEDKNMALRKAEEAKKAeearieevmklYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA 1643
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 124 EEERQALTLRLEVEQQQCRTLQEER---------DEARAGQLSEHRKLEALQVALQEERQA-----WIKQEHQLKERLQA 189
Cdd:PTZ00121 1644 EEKKKAEELKKAEEENKIKAAEEAKkaeedkkkaEEAKKAEEDEKKAAEALKKEAEEAKKAeelkkKEAEEKKKAEELKK 1723
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039736647 190 LQEEGQA---QLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDAL 243
Cdd:PTZ00121 1724 AEEENKIkaeEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAV 1780
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
74-374 |
7.85e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 52.53 E-value: 7.85e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 74 LQEERQAAELTRSKQQETVTRLEQSLSEA---MEALSREQ-------EGARLQQR----EKEAL---------EEERQAL 130
Cdd:pfam12128 602 LRERLDKAEEALQSAREKQAAAEEQLVQAngeLEKASREEtfartalKNARLDLRrlfdEKQSEkdkknkalaERKDSAN 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 131 TLRLEVEQQQCRTLQEERD--EARAGQLSEHR--KLEALQVaLQEERQAwikQEHQLKERLQALQEEGQAQLEREKGNSQ 206
Cdd:pfam12128 682 ERLNSLEAQLKQLDKKHQAwlEEQKEQKREARteKQAYWQV-VEGALDA---QLALLKAAIAARRSGAKAELKALETWYK 757
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 207 REAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAvQLEQRVTE---RLAEAQEN 283
Cdd:pfam12128 758 RDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATQLS-NIERAISElqqQLARLIAD 836
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 284 SLRQAASL---RDHHRKQLQELSGQHQ--QELAAQLAQFKVEmadreerqqQVAQDYELRLAREQARVRDLKSGNQQLEE 358
Cdd:pfam12128 837 TKLRRAKLemeRKASEKQQVRLSENLRglRCEMSKLATLKED---------ANSEQAQGSIGERLAQLEDLKLKRDYLSE 907
|
330
....*....|....*.
gi 1039736647 359 QRAELVERLQAMLQAH 374
Cdd:pfam12128 908 SVKKYVEHFKNVIADH 923
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
77-281 |
8.05e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 8.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 77 ERQAAELTRSKQQETVTRLEQslseaMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARagQL 156
Cdd:COG4717 52 EKEADELFKPQGRKPELNLKE-----LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE--KL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 157 SEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTV 236
Cdd:COG4717 125 LQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEEL 204
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 1039736647 237 RRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQ 281
Cdd:COG4717 205 QQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEAR 249
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
164-373 |
1.16e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 164 ALQVALQEERQAWIKQEHQLKERLQALQEEgQAQLEREKGNSQREAQAAwetQQQFALLQTEVRRLEGDLDTVRRERDAL 243
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKE-LAALKKEEKALLKQLAAL---ERRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 244 QLEMSLVQARYESQRIQMESELAV--QLEQRVTERLAEAQENSLRQAASLR------DHHRKQLQELSGQHQ--QELAAQ 313
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRAlyRLGRQPPLALLLSPEDFLDAVRRLQylkylaPARREQAEELRADLAelAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039736647 314 LAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAEL---VERLQAMLQA 373
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELqqeAEELEALIAR 231
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
210-381 |
1.38e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 1.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 210 QAAWETQQQFALLQtEVRRLEGDLDTVRRERDALQLEMSLVQAryesQRIQMESELAVQLEQRVTERLAEAQEnSLRQAA 289
Cdd:COG4913 242 EALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRL----WFAQRRLELLEAELEELRAELARLEA-ELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 290 SLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERQQQVAQdyelRLAREQARVRDLKSGNQQLEEQRAELVERLQA 369
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERER----RRARLEALLAALGLPLPASAEEFAALRAEAAA 391
|
170
....*....|..
gi 1039736647 370 MLQAHWEEANQL 381
Cdd:COG4913 392 LLEALEEELEAL 403
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
15-384 |
1.76e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 1.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLA------VAVAADHKKDLMIEQLDKTLARVVEGWNRH-EAERTEVLR--GLQEERQAAELTR 85
Cdd:TIGR00618 458 KIHLQESAQSLKEREQQLQtkeqihLQETRKKAVVLARLLELQEEPCPLCGSCIHpNPARQDIDNpgPLTRRMQRGEQTY 537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 86 SKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQ---EERDEARAGQLSE-HRK 161
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdltEKLSEAEDMLACEqHAL 617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 162 LEALQVALQEER----QAWIKQEHQLKE-RLQALQEEGQAQLEREKGNSQREAQAAWETQQQFAL--LQTEVRRLEGDLD 234
Cdd:TIGR00618 618 LRKLQPEQDLQDvrlhLQQCSQELALKLtALHALQLTLTQERVREHALSIRVLPKELLASRQLALqkMQSEKEQLTYWKE 697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 235 TVRRERDALQ-LEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQA-----ASLRDHHRKQLQEL----SG 304
Cdd:TIGR00618 698 MLAQCQTLLReLETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQArtvlkARTEAHFNNNEEVTaalqTG 777
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 305 QHQQELAAQLAQFKVEMADR-------EERQQQVAQDYEL-RLAREQARVRDLKSGNQQLEEQRAELVERLQamLQAHWE 376
Cdd:TIGR00618 778 AELSHLAAEIQFFNRLREEDthllktlEAEIGQEIPSDEDiLNLQCETLVQEEEQFLSRLEEKSATLGEITH--QLLKYE 855
|
....*...
gi 1039736647 377 EANQLLST 384
Cdd:TIGR00618 856 ECSKQLAQ 863
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
71-383 |
2.10e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 51.33 E-value: 2.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 71 LRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDE 150
Cdd:pfam01576 133 IKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRK 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 151 ARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAwETQQQFALLQTEVRRLE 230
Cdd:pfam01576 213 LEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQIS-ELQEDLESERAARNKAE 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 231 GDLDTVRRERDALQLEMSLVQARYESQRiqmesELAVQLEQRVTErLAEAQENSLR----QAASLRDHHRKQLQELSGQH 306
Cdd:pfam01576 292 KQRRDLGEELEALKTELEDTLDTTAAQQ-----ELRSKREQEVTE-LKKALEEETRsheaQLQEMRQKHTQALEELTEQL 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 307 QQELAAQLAQFKVEMADREERQ---------QQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAmLQAHWEE 377
Cdd:pfam01576 366 EQAKRNKANLEKAKQALESENAelqaelrtlQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSK-LQSELES 444
|
....*.
gi 1039736647 378 ANQLLS 383
Cdd:pfam01576 445 VSSLLN 450
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
15-381 |
2.63e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 2.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVL----RGLQEERQAAELTRSKQQE 90
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLereiERLERELEERERRRARLEA 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 91 TVTRLEQSLSEAMEALSREQEGARLQ----QREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKL---- 162
Cdd:COG4913 367 LLAALGLPLPASAEEFAALRAEAAALlealEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLlalr 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 163 ------------------EALQVALQEER--------------------------QAWIKQEHqLKERLQ---------- 188
Cdd:COG4913 447 dalaealgldeaelpfvgELIEVRPEEERwrgaiervlggfaltllvppehyaaaLRWVNRLH-LRGRLVyervrtglpd 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 189 --------------------------------------------------ALQEEGQAQLE---REKGNSQREAQAA--- 212
Cdd:COG4913 526 perprldpdslagkldfkphpfrawleaelgrrfdyvcvdspeelrrhprAITRAGQVKGNgtrHEKDDRRRIRSRYvlg 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 213 WETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYES-QRIQMESELAVQLEQ------RVTERLAEAQENS- 284
Cdd:COG4913 606 FDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlQRLAEYSWDEIDVASaereiaELEAELERLDASSd 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 285 -LRQAASLRDHHRKQLQELSGQhQQELAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVR---DLKSGNQQLEEQR 360
Cdd:COG4913 686 dLAALEEQLEELEAELEELEEE-LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEERFAAALGDAVE 764
|
490 500
....*....|....*....|.
gi 1039736647 361 AELVERLQAMLQAHWEEANQL 381
Cdd:COG4913 765 RELRENLEERIDALRARLNRA 785
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
166-369 |
2.92e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 2.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 166 QVALQEERQAWIKQEhqLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQL 245
Cdd:TIGR02169 181 EVEENIERLDLIIDE--KRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 246 EMSLVQARYESQRIQMEsELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKqlQELSGQHQQELAAQLAQFKVEMadre 325
Cdd:TIGR02169 259 EISELEKRLEEIEQLLE-ELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS--IAEKERELEDAEERLAKLEAEI---- 331
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1039736647 326 ERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQA 369
Cdd:TIGR02169 332 DKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEE 375
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
18-378 |
4.12e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 4.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 18 IQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVvegwnrhEAERTEVLRGLQEERQAAELTRSKQQ---ETVTR 94
Cdd:PRK02224 281 VRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL-------EDRDEELRDRLEECRVAAQAHNEEAEslrEDADD 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 95 LE---QSLSEAMEALSREQEGARLQQREK----EALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQV 167
Cdd:PRK02224 354 LEeraEELREEAAELESELEEAREAVEDRreeiEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 168 ALQEERQAwikqehqlKERLQALQEEGQA-QLEREKGNSQReAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQle 246
Cdd:PRK02224 434 TLRTARER--------VEEAEALLEAGKCpECGQPVEGSPH-VETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-- 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 247 mSLVQARYESQRIQMESELavqLEQRVTERLAEAQENSLRqAASLRD------------HHRKQLQELSGQHQQELAAQL 314
Cdd:PRK02224 503 -DLVEAEDRIERLEERRED---LEELIAERRETIEEKRER-AEELREraaeleaeaeekREAAAEAEEEAEEAREEVAEL 577
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 315 AQFKVEMADREERQQQVA------QDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEA 378
Cdd:PRK02224 578 NSKLAELKERIESLERIRtllaaiADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEAR 647
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
75-366 |
4.64e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 4.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 75 QEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEA--- 151
Cdd:PTZ00121 1339 EEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAakk 1418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 152 RAGQL----SEHRKLEALQVALQEERQA-WIKQEHQLKERLQAL----QEEGQAQLEREKGNSQREAQAAWETQQQFALL 222
Cdd:PTZ00121 1419 KADEAkkkaEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKAEEAkkkaEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 223 QTEVRRLE------GDLDTVRRERDALQL----------EMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQEN--- 283
Cdd:PTZ00121 1499 ADEAKKAAeakkkaDEAKKAEEAKKADEAkkaeeakkadEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDknm 1578
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 284 SLRQAASLRDHHRKQLQELSGQHQQElaaqlAQFKVEMADREERQQQVAQdyELRLAREQARVRDLKSGNQQLEEQRAEL 363
Cdd:PTZ00121 1579 ALRKAEEAKKAEEARIEEVMKLYEEE-----KKMKAEEAKKAEEAKIKAE--ELKKAEEEKKKVEQLKKKEAEEKKKAEE 1651
|
...
gi 1039736647 364 VER 366
Cdd:PTZ00121 1652 LKK 1654
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
21-527 |
6.47e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.73 E-value: 6.47e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 21 LQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVvegwnrheAERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLS 100
Cdd:pfam15921 435 LKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQL--------ESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ 506
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 101 EamealsreqegarlQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQlsehRKLEALQVALQEERQAWIKQE 180
Cdd:pfam15921 507 E--------------KERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQ----TECEALKLQMAEKDKVIEILR 568
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 181 HQLKERLQALQEEGQ--AQLEREKGNSQREAQAAWETQQQFALLQ----TEVRRLEGDLDTVRRERdalqleMSLVQAry 254
Cdd:pfam15921 569 QQIENMTQLVGQHGRtaGAMQVEKAQLEKEINDRRLELQEFKILKdkkdAKIRELEARVSDLELEK------VKLVNA-- 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 255 ESQRIQMESELAVQLEQRVTE-RLAEAQENSLRQAAS-LRDHHRKQLQEL-SGQHQQELAAQLAQFKVE--------MAD 323
Cdd:pfam15921 641 GSERLRAVKDIKQERDQLLNEvKTSRNELNSLSEDYEvLKRNFRNKSEEMeTTTNKLKMQLKSAQSELEqtrntlksMEG 720
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 324 REERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAElVERLQAMLQAHWEEANQLLSTTLLPPNPQAplaepsspGP 403
Cdd:pfam15921 721 SDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTN-ANKEKHFLKEEKNKLSQELSTVATEKNKMA--------GE 791
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 404 LEPEKGERRTW--AMPPMAVALKPVLQQSRE----VKGDVPGAPSVLCSTSPDLSLLLGPPFQNQNSFQP--LEPKPDVT 475
Cdd:pfam15921 792 LEVLRSQERRLkeKVANMEVALDKASLQFAEcqdiIQRQEQESVRLKLQHTLDVKELQGPGYTSNSSMKPrlLQPASFTR 871
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 1039736647 476 PPTAGPFSALEA-FTDDHRAERPFPEEDPGSDgdarlppasqlegLKNFLQQL 527
Cdd:pfam15921 872 THSNVPSSQSTAsFLSHHSRKTNALKEDPTRD-------------LKQLLQEL 911
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
81-272 |
8.03e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 8.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 81 AELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVE--QQQCRTLQEERDEARAGQLSE 158
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLEllEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 159 HRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAW-------ETQQQFALLQTEVRRLEG 231
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAalglplpASAEEFAALRAEAAALLE 394
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039736647 232 DLDTVRRERDALQLEMSLVQARYESQRIQMESELAvQLEQR 272
Cdd:COG4913 395 ALEEELEALEEALAEAEAALRDLRRELRELEAEIA-SLERR 434
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
52-370 |
8.72e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.40 E-value: 8.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 52 TLARVVEGWNRHEAERTEVLRGLQEERQaaELTRSKqqETVTRLEQSLSEAMEALSREQEGARLQQREkeaLEEERQAL- 130
Cdd:pfam01576 640 SLARALEEALEAKEELERTNKQLRAEME--DLVSSK--DDVGKNVHELERSKRALEQQVEEMKTQLEE---LEDELQATe 712
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 131 --TLRLEVEQQQCRTlQEERD-EARAGQLSEHRKLEALQValqeeRQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQR 207
Cdd:pfam01576 713 daKLRLEVNMQALKA-QFERDlQARDEQGEEKRRQLVKQV-----RELEAELEDERKQRAQAVAAKKKLELDLKELEAQI 786
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 208 EA--QAAWETQQQFALLQTEVRRLEGDLDTVRRERDALqlemsLVQAR--------YESQRIQMESELAV---QLEQRVT 274
Cdd:pfam01576 787 DAanKGREEAVKQLKKLQAQMKDLQRELEEARASRDEI-----LAQSKesekklknLEAELLQLQEDLAAserARRQAQQ 861
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 275 ER--LAEAQENSLRQAASLRDHHRkQLQELSGQHQQELaaQLAQFKVEM-ADREERQQQVAQDYELRLAREQARVRDLKS 351
Cdd:pfam01576 862 ERdeLADEIASGASGKSALQDEKR-RLEARIAQLEEEL--EEEQSNTELlNDRLRKSTLQVEQLTTELAAERSTSQKSES 938
|
330
....*....|....*....
gi 1039736647 352 GNQQLEEQRAELVERLQAM 370
Cdd:pfam01576 939 ARQQLERQNKELKAKLQEM 957
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
15-268 |
9.08e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 9.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNR-HEAERTEVLRGLQEERQAAEltRSKQQETVT 93
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEElKKAEEENKIKAAEEAKKAEE--DKKKAEEAK 1681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 94 RLEQSLSEAMEALSREQEGAR-LQQREKEALEEERQALTLRLEVE------QQQCRTLQEERDEARAGQLSEHRKLEALQ 166
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKkAEELKKKEAEEKKKAEELKKAEEenkikaEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 167 VALQEERQAwikqEHQLKERLQALQEEGQAQLEREKGNSQREAQaawETQQQFALLQtevrrlEGDLDTVRRERDALQLE 246
Cdd:PTZ00121 1762 LKKEEEKKA----EEIRKEKEAVIEEELDEEDEKRRMEVDKKIK---DIFDNFANII------EGGKEGNLVINDSKEME 1828
|
250 260
....*....|....*....|..
gi 1039736647 247 MSLVQARYESQRIQMESELAVQ 268
Cdd:PTZ00121 1829 DSAIKEVADSKNMQLEEADAFE 1850
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
62-382 |
9.15e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 9.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 62 RHEAERTEVLRGLQEERQAAEltrsKQQETVTRLEQSLSEAMEALSREQEGARLQQrEKEALEEERQALTLRLEVEQQQC 141
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELE----EELEELEAELEELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 142 RTLQEERDEARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEgQAQLEREKGNSQRE---AQAAWETQQQ 218
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQR-LAELEEELEEAQEEleeLEEELEQLEN 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 219 FALLQTEVRRLE--------------------GDLDTVRRERDALQLEMSLVQARYESQRIQmeselAVQLEQRVTERLA 278
Cdd:COG4717 235 ELEAAALEERLKearlllliaaallallglggSLLSLILTIAGVLFLVLGLLALLFLLLARE-----KASLGKEAEELQA 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 279 EAQENSLRQAASLRDHHRKQL-QELSGQHQQELAAQLAQFKVEMADREERQQQVAQDyelrlAREQARVRDLKSGNQQLE 357
Cdd:COG4717 310 LPALEELEEEELEELLAALGLpPDLSPEELLELLDRIEELQELLREAEELEEELQLE-----ELEQEIAALLAEAGVEDE 384
|
330 340
....*....|....*....|....*..
gi 1039736647 358 EQRAELVERLQAM--LQAHWEEANQLL 382
Cdd:COG4717 385 EELRAALEQAEEYqeLKEELEELEEQL 411
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
22-360 |
1.10e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 22 QTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELtrsKQQETVTRLEQSLSE 101
Cdd:PTZ00121 1132 EARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEEL---RKAEDARKAEAARKA 1208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 102 AMEalsREQEGARLQQREKEAlEEERQALTLRLEVEqqQCRTLQEERDEaragqlSEHRKLEALQVALQEERQAWIKQEH 181
Cdd:PTZ00121 1209 EEE---RKAEEARKAEDAKKA-EAVKKAEEAKKDAE--EAKKAEEERNN------EEIRKFEEARMAHFARRQAAIKAEE 1276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 182 QLK-ERLQALQEEGQAQlEREKGNSQREAQAAWETQQQfallQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQ 260
Cdd:PTZ00121 1277 ARKaDELKKAEEKKKAD-EAKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 261 MEselAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERQQQVAQDYElRLA 340
Cdd:PTZ00121 1352 AE---AAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAK-KKA 1427
|
330 340
....*....|....*....|
gi 1039736647 341 REQARVRDLKsgnQQLEEQR 360
Cdd:PTZ00121 1428 EEKKKADEAK---KKAEEAK 1444
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
26-407 |
1.19e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.81 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 26 LELQQQLAVAVAADHKK-DLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAME 104
Cdd:TIGR00618 175 LDQYTQLALMEFAKKKSlHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 105 ALSREQEGARLQQREKE------ALEEERQALTLR-------------LEVEQQQCRTLQE-------------ERDEAR 152
Cdd:TIGR00618 255 QLKKQQLLKQLRARIEElraqeaVLEETQERINRArkaaplaahikavTQIEQQAQRIHTElqskmrsrakllmKRAAHV 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 153 AGQLSEHRKLEALQVALQEE------------RQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFA 220
Cdd:TIGR00618 335 KQQSSIEEQRRLLQTLHSQEihirdahevatsIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDT 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 221 LLQTEvRRLEGDLDTVRRERDALQ--LEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQ--ENSLRQAASLRDHHR 296
Cdd:TIGR00618 415 RTSAF-RDLQGQLAHAKKQQELQQryAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQtkEQIHLQETRKKAVVL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 297 KQLQELSGQhQQELAAQLAQFKVEM--ADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAH 374
Cdd:TIGR00618 494 ARLLELQEE-PCPLCGSCIHPNPARqdIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSF 572
|
410 420 430
....*....|....*....|....*....|...
gi 1039736647 375 WEEANQLLSTTLLPPNPQAPLAEPSSPGPLEPE 407
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLTEKLSE 605
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
171-404 |
1.19e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 171 EERQAWIKQE-HQLKERLQALQEEGQAQLEREKGNSqreaqaaweTQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSL 249
Cdd:COG3206 174 RKALEFLEEQlPELRKELEEAEAALEEFRQKNGLVD---------LSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 250 VQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLRDHH------RKQLQELSGQHQQELAAQLAQFKVEMAD 323
Cdd:COG3206 245 LRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHpdvialRAQIAALRAQLQQEAQRILASLEAELEA 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 324 REERQQQVAQdyelRLAREQARVRDLKSGNQQLE--EQRAELVERLQAMLQAHWEEANqlLSTTLLPPN------PQAPL 395
Cdd:COG3206 325 LQAREASLQA----QLAQLEARLAELPELEAELRrlEREVEVARELYESLLQRLEEAR--LAEALTVGNvrvidpAVVPL 398
|
....*....
gi 1039736647 396 aEPSSPGPL 404
Cdd:COG3206 399 -KPVSPKKL 406
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
12-294 |
1.71e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 48.43 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 12 QHCERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLA---RVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQ 88
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKeeeKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 89 QETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTL--QEERDEARAGQLSEHRKLEALQ 166
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLeqLEEELLAKKKLESERLSSAAKL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 167 VALQEERQAWIKQEHQLKERLqALQEEGQAQLEREKGNSQREAQaawETQQQFALLQTEVRRLEGDLDTVRRERDALQLE 246
Cdd:pfam02463 393 KEEELELKSEEEKEAQLLLEL-ARQLEDLLKEEKKEELEILEEE---EESIELKQGKLTEEKEELEKQELKLLKDELELK 468
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1039736647 247 MSLVQA---RYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLRDH 294
Cdd:pfam02463 469 KSEDLLketQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDG 519
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
15-326 |
1.73e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 48.50 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAvavaADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRskqQETVTR 94
Cdd:TIGR00606 244 ENELDPLKNRLKEIEHNLS----KIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNH---QRTVRE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 95 LEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEaragqLSEHRKLEALQVALQEERQ 174
Cdd:TIGR00606 317 KERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQS-----LATRLELDGFERGPFSERQ 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 175 awIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAwetqqqfallQTEVR-RLEGDLDTVRRERDALQLEMS-LVQA 252
Cdd:TIGR00606 392 --IKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQ----------ADEIRdEKKGLGRTIELKKEILEKKQEeLKFV 459
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039736647 253 RYESQRIQMESELAVQLEQRVTERLAE---AQENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREE 326
Cdd:TIGR00606 460 IKELQQLEGSSDRILELDQELRKAERElskAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQ 536
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
15-282 |
3.31e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 3.31e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAvavaadhKKDLMIEQLDKTLARVVEgwnRHEAERTEVLRGLQEERQAAELTRSKQQETVTR 94
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELE-------KLTEEISELEKRLEEIEQ---LLEELNKKIKDLGEEEQLRVKEKIGELEAEIAS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 95 LEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAgqlsehrKLEALQVALQEER- 173
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKE-------ELEDLRAELEEVDk 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 174 --QAWIKQEHQLKERLQALQEEgqaqLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQ 251
Cdd:TIGR02169 379 efAETRDELKDYREKLEKLKRE----INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
250 260 270
....*....|....*....|....*....|....*.
gi 1039736647 252 ARYESQRIQMESE----LAVQLE-QRVTERLAEAQE 282
Cdd:TIGR02169 455 WKLEQLAADLSKYeqelYDLKEEyDRVEKELSKLQR 490
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-380 |
3.85e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 3.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 64 EAERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARlqqrekeALEEERQALTLRlevEQQQCRT 143
Cdd:PTZ00121 1126 DARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK-------KAEAARKAEEVR---KAEELRK 1195
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 144 LQEERDEARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERlqalqEEGQAQLEREKGNSQ----REAQAAWETQQQF 219
Cdd:PTZ00121 1196 AEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKD-----AEEAKKAEEERNNEEirkfEEARMAHFARRQA 1270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 220 ALLQTEVRRLEgDLDTVRRERDALQLEMSLVQARYESQRIQMEselavqlEQRVTERLAEAQENSLRQAASLRD--HHRK 297
Cdd:PTZ00121 1271 AIKAEEARKAD-ELKKAEEKKKADEAKKAEEKKKADEAKKKAE-------EAKKADEAKKKAEEAKKKADAAKKkaEEAK 1342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 298 QLQELSGQHQQELAAQL--AQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAhw 375
Cdd:PTZ00121 1343 KAAEAAKAEAEAAADEAeaAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKA-- 1420
|
....*
gi 1039736647 376 EEANQ 380
Cdd:PTZ00121 1421 DEAKK 1425
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
75-371 |
4.76e-05 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 46.40 E-value: 4.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 75 QEERQAAELTRSKQQETVTRLEQSLSEAM-EALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDeaRA 153
Cdd:pfam02029 9 RERRRRAREERRRQKEEEEPSGQVTESVEpNEHNSYEEDSELKPSGQGGLDEEEAFLDRTAKREERRQKRLQEALE--RQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 154 GQLSEHRKLEALQVALQEERqawikqehqlKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDL 233
Cdd:pfam02029 87 KEFDPTIADEKESVAERKEN----------NEEEENSSWEKEEKRDSRLGRYKEEETEIREKEYQENKWSTEVRQAEEEG 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 234 DTVRRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTE-----------------------------------RLA 278
Cdd:pfam02029 157 EEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLdqkrghpevksqngeeevtklkvttkrrqgglsqsQER 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 279 EAQENSLRQAASLRDHHRKQLQELSG-------QHQQELAAQLAQFKVEMADR----EERQQQVAQDYELRLAREQARVR 347
Cdd:pfam02029 237 EEEAEVFLEAEQKLEELRRRRQEKESeefeklrQKQQEAELELEELKKKREERrkllEEEEQRRKQEEAERKLREEEEKR 316
|
330 340
....*....|....*....|....
gi 1039736647 348 DLKsgnQQLEEQRAELVERLQAML 371
Cdd:pfam02029 317 RMK---EEIERRRAEAAEKRQKLP 337
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
71-257 |
5.60e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 5.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 71 LRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTL------ 144
Cdd:COG4942 36 IAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELlralyr 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 145 -----------------QEERDEARAGQLSEHRK--LEALQVALQE--ERQAWIKQEHQLKERLQALQEEGQAQLEREKg 203
Cdd:COG4942 116 lgrqpplalllspedflDAVRRLQYLKYLAPARReqAEELRADLAElaALRAELEAERAELEALLAELEEERAALEALK- 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 1039736647 204 nSQREAQAAwETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQ 257
Cdd:COG4942 195 -AERQKLLA-RLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
16-191 |
5.85e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 5.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 16 RHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARvvegwNRHEAERTEvLRGLQEERQAAELTRSKQQETVTRL 95
Cdd:COG4913 255 EPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLE-----AELEELRAE-LARLEAELERLEARLDALREELDEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 96 EQSLSEA----MEALSREQEGARLQQREKEALEEERQALTLRLEVE-----------QQQCRTLQEERDEARAGQLSEHR 160
Cdd:COG4913 329 EAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAALGLPlpasaeefaalRAEAAALLEALEEELEALEEALA 408
|
170 180 190
....*....|....*....|....*....|.
gi 1039736647 161 KLEALQVALQEERQawikqehQLKERLQALQ 191
Cdd:COG4913 409 EAEAALRDLRRELR-------ELEAEIASLE 432
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
16-386 |
5.89e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.30 E-value: 5.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 16 RHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGwnRHEAERTEVLRGLQEERQAAELTRSKQQETVTRL 95
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL--REELEKLEKLLQLLPLYQELEALEAELAELPERL 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 96 EQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEERQA 175
Cdd:COG4717 149 EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 176 W--IKQEHQLKERLQALQEEGQ------------AQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERD 241
Cdd:COG4717 229 LeqLENELEAAALEERLKEARLllliaaallallGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 242 ALQLEMSLVQARYESQRIQMESELAVQLEqRVTERLAEAQEnsLRQAASLRDHHRKQLQELsgQHQQELAAQLAQFKVEm 321
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPE-ELLELLDRIEE--LQELLREAEELEEELQLE--ELEQEIAALLAEAGVE- 382
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039736647 322 aDREERQQQVAQDYELRlaREQARVRDLKsgnQQLEEQRAELVERLQAMLQAHWEEANQLLSTTL 386
Cdd:COG4717 383 -DEEELRAALEQAEEYQ--ELKEELEELE---EQLEELLGELEELLEALDEEELEEELEELEEEL 441
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
8-220 |
6.33e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.59 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 8 RVSFQHCERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSK 87
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 88 QQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALT-LRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQ 166
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEeAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039736647 167 ---VALQEERQAWIKQEHQLKERLQALQeegqaQLEREKGNSQREAQAAWETQQQFA 220
Cdd:TIGR02168 468 eelEEAEQALDAAERELAQLQARLDSLE-----RLQENLEGFSEGVKALLKNQSGLS 519
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
103-372 |
6.38e-05 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 46.33 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 103 MEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQ-----EERDEARAGQLSEHRKLEAlQVALQEER---- 173
Cdd:PRK10246 557 TKQLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQpwldaQEEHERQLRLLSQRHELQG-QIAAHNQQiiqy 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 174 -QAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAA-WETQQ-QFALLQTEVRRLEGDLDTVRRERDA-------- 242
Cdd:PRK10246 636 qQQIEQRQQQLLTALAGYALTLPQEDEEASWLATRQQEAQsWQQRQnELTALQNRIQQLTPLLETLPQSDDLphseetva 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 243 --------------------LQLEMSLVQARYESQRIQMESELAVQLEQRVTERLA----EAQENSLRQAASLRDHHRKQ 298
Cdd:PRK10246 716 ldnwrqvheqclslhsqlqtLQQQDVLEAQRLQKAQAQFDTALQASVFDDQQAFLAalldEETLTQLEQLKQNLENQRQQ 795
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039736647 299 LQELSGQHQQELAAQLAQ---FKVEMADREERQQQVAQ-DYELRL-AREQARVRdlksgnQQLeEQRAELVERLQAMLQ 372
Cdd:PRK10246 796 AQTLVTQTAQALAQHQQHrpdGLDLTVTVEQIQQELAQlAQQLREnTTRQGEIR------QQL-KQDADNRQQQQALMQ 867
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
15-369 |
6.61e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 6.61e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAAdhkkdlmIEQLDKTLARVVEGWNRHEaERTEVLR----GLQEERQAAELTRSKQQE 90
Cdd:PRK02224 313 EARREELEDRDEELRDRLEECRVA-------AQAHNEEAESLREDADDLE-ERAEELReeaaELESELEEAREAVEDRRE 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 91 TVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARA----------GQ-LSEH 159
Cdd:PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecGQpVEGS 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 160 RKLEAL-----QVALQEERQAWIKQEHQ-LKERLQALQEEGQAQLEREKGNSQREAqaaweTQQQFALLQTEVRRLEGDL 233
Cdd:PRK02224 465 PHVETIeedreRVEELEAELEDLEEEVEeVEERLERAEDLVEAEDRIERLEERRED-----LEELIAERRETIEEKRERA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 234 DTVRRERDALQLEMSLVQARYESQRIQMESELAV--QLEQRVTErLAEAQE--NSLRQAASLRDHHRKQLQELSGQHQQe 309
Cdd:PRK02224 540 EELRERAAELEAEAEEKREAAAEAEEEAEEAREEvaELNSKLAE-LKERIEslERIRTLLAAIADAEDEIERLREKREA- 617
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 310 LAAQLAQFKVEMADREERQQQVAQDYelrlarEQARVRDLKSGNQQLEEQRAELVERLQA 369
Cdd:PRK02224 618 LAELNDERRERLAEKRERKRELEAEF------DEARIEEAREDKERAEEYLEQVEEKLDE 671
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
15-305 |
6.91e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 6.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLA---VAVAADHKKDLMIEQLDKTLARVvEGWNRHEAERTEVLRGLQEERQAAEltrSKQQET 91
Cdd:PRK04863 382 EARAEAAEEEVDELKSQLAdyqQALDVQQTRAIQYQQAVQALERA-KQLCGLPDLTADNAEDWLEEFQAKE---QEATEE 457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 92 VTRLEQSLSEAMEALSREQEGARLQQR---EKEALEEERQALTLRLEVEQQQcrtLQEERDEARAGQLSEHRKLEALQVA 168
Cdd:PRK04863 458 LLSLEQKLSVAQAAHSQFEQAYQLVRKiagEVSRSEAWDVARELLRRLREQR---HLAEQLQQLRMRLSELEQRLRQQQR 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 169 LQEERQAWIKQEHQ---LKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEgdldtvRRERDALQL 245
Cdd:PRK04863 535 AERLLAEFCKRLGKnldDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA------ARAPAWLAA 608
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 246 EMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQENslrqaaslRDHHRKQLQELSGQ 305
Cdd:PRK04863 609 QDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVE--------RDELAARKQALDEE 660
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
191-422 |
7.07e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.59 E-value: 7.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 191 QEEGQAQLEREKGNSQREAQAAwetQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQLE 270
Cdd:COG3883 21 KQKELSELQAELEAAQAELDAL---QAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 271 QRVT----ERLAEAQENS--LRQAASLRDHHRKQLQELsgQHQQELAAQLAQFKVEMADREERQQQVAQDYELRLAREQA 344
Cdd:COG3883 98 SGGSvsylDVLLGSESFSdfLDRLSALSKIADADADLL--EELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEA 175
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039736647 345 RVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEANQLLSTTLLPPNPQAPLAEPSSPGPLEPEKGERRTWAMPPMAVA 422
Cdd:COG3883 176 QQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAG 253
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
94-380 |
7.13e-05 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 45.68 E-value: 7.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 94 RLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEER 173
Cdd:pfam13868 35 KAEEKEEERRLDEMMEEERERALEEEEEKEEERKEERKRYRQELEEQIEEREQKRQEEYEEKLQEREQMDEIVERIQEED 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 174 QAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTE-VRRLEGDLDTVRRERDALQLEMSLVQA 252
Cdd:pfam13868 115 QAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAErEEEREAEREEIEEEKEREIARLRAQQE 194
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 253 RYESQRIQMESELAV----QLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERQ 328
Cdd:pfam13868 195 KAQDEKAERDELRAKlyqeEQERKERQKEREEAEKKARQRQELQQAREEQIELKERRLAEEAEREEEEFERMLRKQAEDE 274
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1039736647 329 QQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEANQ 380
Cdd:pfam13868 275 EIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAE 326
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
20-381 |
7.80e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 46.37 E-value: 7.80e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 20 SLQTRVLELQQQLAVAVAAdhKKDLMIEQLDKTLARVVEGWN-RHEAERTEVLRGLQEERQAAEltrskqqetvtRLEQS 98
Cdd:pfam12128 357 ENLEERLKALTGKHQDVTA--KYNRRRSKIKEQNNRDIAGIKdKLAKIREARDRQLAVAEDDLQ-----------ALESE 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 99 LSEAMEALSREQEGArlQQREKEALEEER---------QALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQvAL 169
Cdd:pfam12128 424 LREQLEAGKLEFNEE--EYRLKSRLGELKlrlnqatatPELLLQLENFDERIERAREEQEAANAEVERLQSELRQAR-KR 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 170 QEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQ---REAQAAWEtqQQFALLQTEVRRLEGDLDTVRRERDALQlE 246
Cdd:pfam12128 501 RDQASEALRQASRRLEERQSALDELELQLFPQAGTLLhflRKEAPDWE--QSIGKVISPELLHRTDLDPEVWDGSVGG-E 577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 247 MSLVQARYESQRIQMESelAVQLEQRVTERLAEAQEnSLRQAASLRDHHRKQLQELSGQ-HQQELAAQLAQFKVEMAdRE 325
Cdd:pfam12128 578 LNLYGVKLDLKRIDVPE--WAASEEELRERLDKAEE-ALQSAREKQAAAEEQLVQANGElEKASREETFARTALKNA-RL 653
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039736647 326 ERQQQVAQDYELRLAREQARVRDLKSGNQQ---LEEQRAELVERLQAMLQAHWEEANQL 381
Cdd:pfam12128 654 DLRRLFDEKQSEKDKKNKALAERKDSANERlnsLEAQLKQLDKKHQAWLEEQKEQKREA 712
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
18-193 |
8.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 8.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 18 IQSLQTRVLELQQQLAVAVAADHKkdlmIEQLDKTLARVVEGWNRHE---------AERTEVLRGLQEERQAAELTRS-- 86
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEA----LEAELDALQERREALQRLAeyswdeidvASAEREIAELEAELERLDASSDdl 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 87 -KQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEAL 165
Cdd:COG4913 688 aALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVEREL 767
|
170 180
....*....|....*....|....*...
gi 1039736647 166 QVALQEERQAWIKQEHQLKERLQALQEE 193
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELERAMRA 795
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
12-342 |
9.60e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 9.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 12 QHCERHIQSLQTRVLELQQQLAVAVAADHKKDLMIE--QLDKTLARVVEGWNRHEAERTEvLRGLQEERQAAELTRSKQQ 89
Cdd:COG4717 98 EELEEELEELEAELEELREELEKLEKLLQLLPLYQEleALEAELAELPERLEELEERLEE-LRELEEELEELEAELAELQ 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 90 ETVTRLEQSLSEAME-ALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVA 168
Cdd:COG4717 177 EELEELLEQLSLATEeELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAA 256
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 169 L--------------------------------------QEERQAWIKQEHQLKERLQALQEEGQAQLEREKG----NSQ 206
Cdd:COG4717 257 AllallglggsllsliltiagvlflvlgllallflllarEKASLGKEAEELQALPALEELEEEELEELLAALGlppdLSP 336
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 207 REAQAAWETQQQFALLQTEVRRLEGDLDTVR---------------------------RERDALQLEMSLVQARYESQRI 259
Cdd:COG4717 337 EELLELLDRIEELQELLREAEELEEELQLEEleqeiaallaeagvedeeelraaleqaEEYQELKEELEELEEQLEELLG 416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 260 QMESELAVQLEQRVTERLAEAQENsLRQAASLRDHHRKQLQELSGQHQQ-ELAAQLAQFKVEMADREERQQQVAQDY-EL 337
Cdd:COG4717 417 ELEELLEALDEEELEEELEELEEE-LEELEEELEELREELAELEAELEQlEEDGELAELLQELEELKAELRELAEEWaAL 495
|
....*
gi 1039736647 338 RLARE 342
Cdd:COG4717 496 KLALE 500
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-381 |
1.00e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 64 EAERTEVLRGLQEERQAAEltRSKQQETVTRLEQSlSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRT 143
Cdd:PTZ00121 1282 ELKKAEEKKKADEAKKAEE--KKKADEAKKKAEEA-KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 144 LQEERDEARAGQL---SEHRKLEALQVALQEERQA--WIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQ 218
Cdd:PTZ00121 1359 AEAAEEKAEAAEKkkeEAKKKADAAKKKAEEKKKAdeAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 219 FAllqTEVRRLEGDLDTVRRERDALQLEMSLVQARY--ESQRIQMESELAVQLEQRVTERLAEAQEnsLRQAAslrdHHR 296
Cdd:PTZ00121 1439 KA---EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKadEAKKKAEEAKKADEAKKKAEEAKKKADE--AKKAA----EAK 1509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 297 KQLQELSGQHQQELAAQLAQF-KVEMADREERQQQVAQDYELRLAREQARVRDLKsgnqQLEEQRAELVERLQAMLQAhw 375
Cdd:PTZ00121 1510 KKADEAKKAEEAKKADEAKKAeEAKKADEAKKAEEKKKADELKKAEELKKAEEKK----KAEEAKKAEEDKNMALRKA-- 1583
|
....*.
gi 1039736647 376 EEANQL 381
Cdd:PTZ00121 1584 EEAKKA 1589
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
54-357 |
1.08e-04 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 45.56 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 54 ARVVEgwnRHEAERTEvLRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEA--------------LSREQEGARLQQRE 119
Cdd:PRK10246 187 AMVFE---QHKSARTE-LEKLQAQASGVALLTPEQVQSLTASLQVLTDEEKQlltaqqqqqqslnwLTRLDELQQEASRR 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 120 KEALEEERQALT------LRLEVEQ--QQCRTLQEERDEARAGQLSEHRKLEALQVALQE--ERQAWIKQ--EHQLKERL 187
Cdd:PRK10246 263 QQALQQALAAEEkaqpqlAALSLAQpaRQLRPHWERIQEQSAALAHTRQQIEEVNTRLQStmALRARIRHhaAKQSAELQ 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 188 QALQEEGQAQLEREKGNSQREAQAAWETQ-QQFALLQTEVRRLEGDLDTVRRERDALQlemslvqaryESQRIQMESELA 266
Cdd:PRK10246 343 AQQQSLNTWLAEHDRFRQWNNELAGWRAQfSQQTSDREQLRQWQQQLTHAEQKLNALP----------AITLTLTADEVA 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 267 VQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFKVEMADREERQQQVAQDYElrLAREQARV 346
Cdd:PRK10246 413 AALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKT--ICEQEARI 490
|
330
....*....|.
gi 1039736647 347 RDLKSGNQQLE 357
Cdd:PRK10246 491 KDLEAQRAQLQ 501
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
14-256 |
1.17e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 14 CERHIQSLQTRVLELQQQLAvAVAADHKKdlmIEQLDKTLARVVEGWNRHEA--ERTEVLR-GLQEERQAAELTRSKQQE 90
Cdd:PRK02224 473 DRERVEELEAELEDLEEEVE-EVEERLER---AEDLVEAEDRIERLEERREDleELIAERReTIEEKRERAEELRERAAE 548
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 91 TVTRLEQSLSEAMEALSREQEGARlqqrEKEALEEERQALTLRLEvEQQQCRTLQEERDEARagqlsehrklEALQvALQ 170
Cdd:PRK02224 549 LEAEAEEKREAAAEAEEEAEEARE----EVAELNSKLAELKERIE-SLERIRTLLAAIADAE----------DEIE-RLR 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 171 EERQAWIKQEHQLKERLQALQEEgQAQLEREKGNSQREaqaawETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLV 250
Cdd:PRK02224 613 EKREALAELNDERRERLAEKRER-KRELEAEFDEARIE-----EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAV 686
|
....*.
gi 1039736647 251 QARYES 256
Cdd:PRK02224 687 ENELEE 692
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
43-383 |
1.84e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.05 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 43 DLMIEQLDKTLARVVEGWNR---HEAERTEVLRGLQEERQAAELTRSKQqETVTRLEQSLSEAMEALSREQEGARLQQRE 119
Cdd:PRK03918 175 KRRIERLEKFIKRTENIEELikeKEKELEEVLREINEISSELPELREEL-EKLEKEVKELEELKEEIEELEKELESLEGS 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 120 KEALEEERQALTLRLEVEQQQCRTLQEerdeaRAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLE 199
Cdd:PRK03918 254 KRKLEEKIRELEERIEELKKEIEELEE-----KVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 200 REKGNSQREAQAAwETQQQFALLQTEVRRLEGDLDTVRRERdALQLEMSLVQAR---YESQRIQMESELAVQLEQRVTER 276
Cdd:PRK03918 329 RIKELEEKEERLE-ELKKKLKELEKRLEELEERHELYEEAK-AKKEELERLKKRltgLTPEKLEKELEELEKAKEEIEEE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 277 LAE--AQENSLRQAASLRDHHRKQLQ-----------ELSGQHQQELAAQ-------LAQFKVEMADREERQQQVAQDYE 336
Cdd:PRK03918 407 ISKitARIGELKKEIKELKKAIEELKkakgkcpvcgrELTEEHRKELLEEytaelkrIEKELKEIEEKERKLRKELRELE 486
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1039736647 337 LRLAREQaRVRDLKSGNQQLEEQRAELVERLQAMLQAHWEEANQLLS 383
Cdd:PRK03918 487 KVLKKES-ELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKE 532
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
56-218 |
2.04e-04 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 44.41 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 56 VVEGWNRHE-----AERTEVLRGLQEERQAAELtRSKQQETVTRLeqslseamealsREQEGARLQQRE--KEALEEERQ 128
Cdd:PRK09510 60 VVEQYNRQQqqqksAKRAEEQRKKKEQQQAEEL-QQKQAAEQERL------------KQLEKERLAAQEqkKQAEEAAKQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 129 ALTLRLEVEQQQCRTLQEER--DEARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQ 206
Cdd:PRK09510 127 AALKQKQAEEAAAKAAAAAKakAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
|
170
....*....|..
gi 1039736647 207 REAQAAWETQQQ 218
Cdd:PRK09510 207 AKKKAAAEAKKK 218
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
16-319 |
2.07e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.96 E-value: 2.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 16 RHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQQETVT-- 93
Cdd:TIGR00618 556 KQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHlq 635
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 94 RLEQSLSEAMEALSREQ---------EGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEA 164
Cdd:TIGR00618 636 QCSQELALKLTALHALQltltqervrEHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE 715
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 165 LQVALQEERQAWIKQEHQLKERLQALQE-EGQAQLEREKGNSQREAQAAWETQQQFALLQT--EVRRLEGDLDTVRRERD 241
Cdd:TIGR00618 716 YDREFNEIENASSSLGSDLAAREDALNQsLKELMHQARTVLKARTEAHFNNNEEVTAALQTgaELSHLAAEIQFFNRLRE 795
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039736647 242 ALQLEMSLVQARYESQRIQMESELAVQLEQRVTERlaEAQENSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQFKV 319
Cdd:TIGR00618 796 EDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEE--EQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKI 871
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
68-266 |
2.09e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 68 TEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKE--ALEEERQALTLRLEVEQQQCRTLQ 145
Cdd:COG3206 218 LQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQlaELEAELAELSARYTPNHPDVIALR 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 146 EERDEARAGQLSEhrkLEALQVALQEERQAWIKQEHQLKERLQALQEEgqaqlerekgnsqreaqaawetQQQFALLQTE 225
Cdd:COG3206 298 AQIAALRAQLQQE---AQRILASLEAELEALQAREASLQAQLAQLEAR----------------------LAELPELEAE 352
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1039736647 226 VRRLEgdldtvrRERDALQLEMSLVQARYESQRIQMESELA 266
Cdd:COG3206 353 LRRLE-------REVEVARELYESLLQRLEEARLAEALTVG 386
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
104-226 |
2.15e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 44.69 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 104 EALSReqegARLQQREK-EALEEERQALTlRLEVEQQQCRTLQEERDEARAGQLSEhrKLEALQVALQEERQAWiKQEHQ 182
Cdd:COG0542 397 EAAAR----VRMEIDSKpEELDELERRLE-QLEIEKEALKKEQDEASFERLAELRD--ELAELEEELEALKARW-EAEKE 468
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 1039736647 183 LKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEV 226
Cdd:COG0542 469 LIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEV 512
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
15-370 |
2.20e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.78 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAA----DHKKDLMIEQLDKTLARVVEGwNRHEAERTEVLRGLQEERQ-------AAEL 83
Cdd:pfam01576 376 EKAKQALESENAELQAELRTLQQAkqdsEHKRKKLEGQLQELQARLSES-ERQRAELAEKLSKLQSELEsvssllnEAEG 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 84 TRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLE 163
Cdd:pfam01576 455 KNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLE 534
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 164 ALQVALQEERQAWIKQEHQLKERLQALQEEGQA--QLEREKGNSQREAQAAWETQQQfallqteVRRLEGDLDTVRRERD 241
Cdd:pfam01576 535 EDAGTLEALEEGKKRLQRELEALTQQLEEKAAAydKLEKTKNRLQQELDDLLVDLDH-------QRQLVSNLEKKQKKFD 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 242 ALQLEMSLVQARYESQRIQMESE----------LAVQLEQRVT-----ERLAEAQENSLRQAASLRDHHRKQLQELSgQH 306
Cdd:pfam01576 608 QMLAEEKAISARYAEERDRAEAEareketralsLARALEEALEakeelERTNKQLRAEMEDLVSSKDDVGKNVHELE-RS 686
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039736647 307 QQELAAQLAQFKVEMADREErQQQVAQDYELRL-----AREQARVRDLKSGNQQLEEQRAELVERLQAM 370
Cdd:pfam01576 687 KRALEQQVEEMKTQLEELED-ELQATEDAKLRLevnmqALKAQFERDLQARDEQGEEKRRQLVKQVREL 754
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
15-385 |
2.63e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 44.40 E-value: 2.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDlmiEQLDKTLARVVEgwnrHEAERTEVLRGLQEerqaaeltrskqqetvtr 94
Cdd:pfam01576 214 EGESTDLQEQIAELQAQIAELRAQLAKKE---EELQAALARLEE----ETAQKNNALKKIRE------------------ 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 95 LEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEaragqlsEHRKLEALQVALQEERQ 174
Cdd:pfam01576 269 LEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSK-------REQEVTELKKALEEETR 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 175 AWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARY 254
Cdd:pfam01576 342 SHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 255 ---ESQRIQMESELA-VQLE-QRVTERLAEAQENSLRQAaslrdhhrKQLQELSGQHQ--QELAAqlaqfkvemadrEER 327
Cdd:pfam01576 422 sesERQRAELAEKLSkLQSElESVSSLLNEAEGKNIKLS--------KDVSSLESQLQdtQELLQ------------EET 481
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039736647 328 QQQVAQDYELRlareqarvrdlksgnqQLEEQRAELVERLQAMLQAHWEEANQLLSTT 385
Cdd:pfam01576 482 RQKLNLSTRLR----------------QLEDERNSLQEQLEEEEEAKRNVERQLSTLQ 523
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
65-316 |
2.96e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 65 AERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTL------RLEVEQ 138
Cdd:COG3096 364 EEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARALCGLpdltpeNAEDYL 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 139 QQCRTLQEERDEARAGQ----------LSEHRK--------------LEALQVA-----------LQEERQAWIKQEHQL 183
Cdd:COG3096 444 AAFRAKEQQATEEVLELeqklsvadaaRRQFEKayelvckiageverSQAWQTArellrryrsqqALAQRLQQLRAQLAE 523
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 184 KERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMES 263
Cdd:COG3096 524 LEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPA 603
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1039736647 264 ELAVQ-----LEQRVTERLAEAQE-NSLRQAASLRDHHRKQLQELSGQHQQELAAQLAQ 316
Cdd:COG3096 604 WLAAQdalerLREQSGEALADSQEvTAAMQQLLEREREATVERDELAARKQALESQIER 662
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
47-361 |
3.05e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 3.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 47 EQLDKTLARVVEGWNRHEaERTEVLRGLQEERQAAELTRSKQQETVTRLEQSlSEAMEALSREQEGA-----RLQQREKE 121
Cdd:pfam12128 426 EQLEAGKLEFNEEEYRLK-SRLGELKLRLNQATATPELLLQLENFDERIERA-REEQEAANAEVERLqselrQARKRRDQ 503
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 122 ALEEERQAlTLRLEVEQQQCRTLQEERDeARAGQLSEHRKLEA--------------------LQVALQEERQAWIKQEH 181
Cdd:pfam12128 504 ASEALRQA-SRRLEERQSALDELELQLF-PQAGTLLHFLRKEApdweqsigkvispellhrtdLDPEVWDGSVGGELNLY 581
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 182 QLKERLQALQEEGQAQLEREkgnsQREAQAAWETQQQFAllQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRI-- 259
Cdd:pfam12128 582 GVKLDLKRIDVPEWAASEEE----LRERLDKAEEALQSA--REKQAAAEEQLVQANGELEKASREETFARTALKNARLdl 655
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 260 -----QMESElAVQLEQRVTERLAEAQEnSLRQAAslrdhhrKQLQELSGQHQQELAAQLAQFKVEMADREERQQQVAQD 334
Cdd:pfam12128 656 rrlfdEKQSE-KDKKNKALAERKDSANE-RLNSLE-------AQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGA 726
|
330 340 350
....*....|....*....|....*....|.
gi 1039736647 335 YELRLAR----EQARVRDLKSGNQQLEEQRA 361
Cdd:pfam12128 727 LDAQLALlkaaIAARRSGAKAELKALETWYK 757
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
387-581 |
3.07e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.54 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 387 LPPNPQAPLAEPSSPGPLEPEKGERRTWAMPPmavalkpvlqqsREVKGDVPGAPSVlcSTSPDLSLLLGPPfqnQNSFQ 466
Cdd:PHA03247 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP------------PERPRDDPAPGRV--SRPRRARRLGRAA---QASSP 2679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 467 PLEPKPDVTPPTAGPfsaLEAFTDDHRAERPfPEEDPGSDGDAR-LPPASQLEGLKNFLQQLLETAPQSNGNPSADLLLP 545
Cdd:PHA03247 2680 PQRPRRRAARPTVGS---LTSLADPPPPPPT-PEPAPHALVSATpLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA 2755
|
170 180 190
....*....|....*....|....*....|....*.
gi 1039736647 546 KAGSRAVSSWEEAPQVPRLPPPVHKTKVPLAMASSL 581
Cdd:PHA03247 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL 2791
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
118-367 |
3.14e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 3.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 118 REK--EALEEERQALTLR---LEVEQQQCRTLQEERDEARAGQLS----------------EHRKLEALQVALQEERQAW 176
Cdd:COG3096 783 REKrlEELRAERDELAEQyakASFDVQKLQRLHQAFSQFVGGHLAvafapdpeaelaalrqRRSELERELAQHRAQEQQL 862
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 177 IKQEHQLKERLQALQE-EGQAQLEREKGNSQR------EAQAAWETQQQFALLQTEVRRLEGDLDTVRR---ERDALQLE 246
Cdd:COG3096 863 RQQLDQLKEQLQLLNKlLPQANLLADETLADRleelreELDAAQEAQAFIQQHGKALAQLEPLVAVLQSdpeQFEQLQAD 942
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 247 msLVQARYESQRIQMESELAVQLEQRVT--------ERLAEAQENS------LRQAASLRDHHRKQLQELSGQHQQELAA 312
Cdd:COG3096 943 --YLQAKEQQRRLKQQIFALSEVVQRRPhfsyedavGLLGENSDLNeklrarLEQAEEARREAREQLRQAQAQYSQYNQV 1020
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039736647 313 -------------QLAQFKVEM--------ADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERL 367
Cdd:COG3096 1021 laslkssrdakqqTLQELEQELeelgvqadAEAEERARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRL 1096
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
71-367 |
3.31e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 43.74 E-value: 3.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 71 LRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDE 150
Cdd:COG4372 54 LEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQ 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 151 ARAgqlsEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLE 230
Cdd:COG4372 134 LEA----QIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLI 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 231 GDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQEL 310
Cdd:COG4372 210 ESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALE 289
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039736647 311 AAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERL 367
Cdd:COG4372 290 EAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLL 346
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
187-369 |
3.33e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 3.33e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 187 LQALQEEgQAQLEREKG----NSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQME 262
Cdd:COG4717 48 LERLEKE-ADELFKPQGrkpeLNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 263 SELAVQLEQRVTERLAEAQE--NSLRQAASLRDHHRKQLQELSGQH---QQELAAQLAQFKVEMADREERQQQVAQDYEL 337
Cdd:COG4717 127 LLPLYQELEALEAELAELPErlEELEERLEELRELEEELEELEAELaelQEELEELLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190
....*....|....*....|....*....|..
gi 1039736647 338 RLAREQARVRDLKSGNQQLEEQRAELVERLQA 369
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEA 238
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
94-196 |
3.82e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 43.92 E-value: 3.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 94 RLEQ-SLSEAMEALSREQEgaRLQqREKEALEEERQALTL-RLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQvALQE 171
Cdd:COG0542 403 RMEIdSKPEELDELERRLE--QLE-IEKEALKKEQDEASFeRLAELRDELAELEEELEALKARWEAEKELIEEIQ-ELKE 478
|
90 100
....*....|....*....|....*
gi 1039736647 172 ERQAWIKQEHQLKERLQALQEEGQA 196
Cdd:COG0542 479 ELEQRYGKIPELEKELAELEEELAE 503
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
61-305 |
3.86e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 44.05 E-value: 3.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 61 NRHEAERTEVLRGLQEERQAAELTRSKQQETVTRLE-----QSLSEAMEALSREQEGarlqQREKEALEEERQALTL--- 132
Cdd:NF012221 1548 SKHAKQDDAAQNALADKERAEADRQRLEQEKQQQLAaisgsQSQLESTDQNALETNG----QAQRDAILEESRAVTKelt 1623
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 133 ----RLEVEQQQCRTLQEERDEARAG-----------QLSEHRKLeaLQVALQEERQAWIKQEHQLKERLqALQEEGQAQ 197
Cdd:NF012221 1624 tlaqGLDALDSQATYAGESGDQWRNPfagglldrvqeQLDDAKKI--SGKQLADAKQRHVDNQQKVKDAV-AKSEAGVAQ 1700
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 198 LEREKGNSQREAQAAWEtqqqfallQTEVRRLEGDldtvRRERDALQLEMslvQARYESQRIQMESELAVQLEQRVTERl 277
Cdd:NF012221 1701 GEQNQANAEQDIDDAKA--------DAEKRKDDAL----AKQNEAQQAES---DANAAANDAQSRGEQDASAAENKANQ- 1764
|
250 260
....*....|....*....|....*....
gi 1039736647 278 AEAQENSLRQAASLR-DHHRKQLQELSGQ 305
Cdd:NF012221 1765 AQADAKGAKQDESDKpNRQGAAGSGLSGK 1793
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
78-380 |
4.02e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.79 E-value: 4.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 78 RQAAEltRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEerdEARAGQLS 157
Cdd:COG3096 275 RHANE--RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQT---ALRQQEKI 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 158 EHRK--LEALQVALqEERQAWIKQEHQLKERLQALQEEGQAQLEREKgnSQ-REAQAAWETQQQFAL-LQTEVRRLEgdl 233
Cdd:COG3096 350 ERYQedLEELTERL-EEQEEVVEEAAEQLAEAEARLEAAEEEVDSLK--SQlADYQQALDVQQTRAIqYQQAVQALE--- 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 234 dTVRRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASL---------RDHHRKQLQELSG 304
Cdd:COG3096 424 -KARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELvckiageveRSQAWQTARELLR 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 305 QH--QQELAAQLAQFKVEMAD---REERQQQV---AQDYELRLAREQARVRDLKSGNQQLEEQRAELVERL------QAM 370
Cdd:COG3096 503 RYrsQQALAQRLQQLRAQLAEleqRLRQQQNAerlLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAaeaveqRSE 582
|
330
....*....|
gi 1039736647 371 LQAHWEEANQ 380
Cdd:COG3096 583 LRQQLEQLRA 592
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
18-302 |
4.40e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 18 IQSLQTRVLELQQQLAVAVAADHKkdlmIEQLDKTLARVvegwnrhEAERTEvlrgLQEERQAAELTRSKQQETVTRLEQ 97
Cdd:COG4913 663 VASAEREIAELEAELERLDASSDD----LAALEEQLEEL-------EAELEE----LEEELDELKGEIGRLEKELEQAEE 727
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 98 SLSEAMEALSREQEGARLQQREkeALEEERQALTLRlEVEQQQCRTLQEERDEARAGQLSEHRKLEAlqvALQEERQAW- 176
Cdd:COG4913 728 ELDELQDRLEAAEDLARLELRA--LLEERFAAALGD-AVERELRENLEERIDALRARLNRAEEELER---AMRAFNREWp 801
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 177 ---------IKQEHQLKERLQALQEEGQAQLEREkgnsQREAQAAWETQQQFALLQtevrRLEGDLDTVRRERDalQLEM 247
Cdd:COG4913 802 aetadldadLESLPEYLALLDRLEEDGLPEYEER----FKELLNENSIEFVADLLS----KLRRAIREIKERID--PLND 871
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1039736647 248 SLVQARYESQR-IQME-SELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQEL 302
Cdd:COG4913 872 SLKRIPFGPGRyLRLEaRPRPDPEVREFRQELRAVTSGASLFDEELSEARFAALKRL 928
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
22-189 |
4.65e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 22 QTRVLELQQQLAVAVAADHKKDLMIEQLDKTLARVVEGWNRHEAERTEvLRGLQEERQAAELTRSKQQETVTRLEQSLSE 101
Cdd:COG1579 6 LRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTE-LEDLEKEIKRLELEIEEVEARIKKYEEQLGN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 102 A-----MEALSREQEgarLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAW 176
Cdd:COG1579 85 VrnnkeYEALQKEIE---SLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEEL 161
|
170
....*....|...
gi 1039736647 177 IKQEHQLKERLQA 189
Cdd:COG1579 162 EAEREELAAKIPP 174
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
18-383 |
5.03e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 5.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 18 IQSLQTRVLELQQQL-AVAVAADHKKDLMIEQLDKTLARVVegwNRHEAERTEVLRGLQEERQAAELTRSKQQETVTRLE 96
Cdd:pfam15921 233 ISYLKGRIFPVEDQLeALKSESQNKIELLLQQHQDRIEQLI---SEHEVEITGLTEKASSARSQANSIQSQLEIIQEQAR 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 97 QSLSEAMEALSR-EQEGARLQQREKEA---LEEERQALTLRLEVEQQQCRTLQEERDE--ARAGQLSE---------HRK 161
Cdd:pfam15921 310 NQNSMYMRQLSDlESTVSQLRSELREAkrmYEDKIEELEKQLVLANSELTEARTERDQfsQESGNLDDqlqklladlHKR 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 162 LEALQVALQEERQAW-------IKQEH-------------QLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQFAL 221
Cdd:pfam15921 390 EKELSLEKEQNKRLWdrdtgnsITIDHlrrelddrnmevqRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 222 LQTE---VRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELA--VQLEQRVTERLAEAQ-----ENSLRQAASL 291
Cdd:pfam15921 470 LESTkemLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAeiTKLRSRVDLKLQELQhlkneGDHLRNVQTE 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 292 RDHHRKQLQE-----------------LSGQHQQELAAQL---AQFKVEMADREERqqqvAQDYELRLAREQARVRDLKS 351
Cdd:pfam15921 550 CEALKLQMAEkdkvieilrqqienmtqLVGQHGRTAGAMQvekAQLEKEINDRRLE----LQEFKILKDKKDAKIRELEA 625
|
410 420 430
....*....|....*....|....*....|....*.
gi 1039736647 352 GNQQLEEQRAELV----ERLQAMLQAHwEEANQLLS 383
Cdd:pfam15921 626 RVSDLELEKVKLVnagsERLRAVKDIK-QERDQLLN 660
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-358 |
5.20e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 64 EAERTEVLRGLQEERQA-----AEltRSKQQETVTRLEQSLSEAMealsREQEGARlqQREKEALEEERQALTLRLEVEQ 138
Cdd:PTZ00121 1538 EAKKAEEKKKADELKKAeelkkAE--EKKKAEEAKKAEEDKNMAL----RKAEEAK--KAEEARIEEVMKLYEEEKKMKA 1609
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 139 QQCRTLQEERDEARAGQLSEHRKLEALQVALQEErqawikQEHQLKERLQALQEEGQAQLEREKGNSQREAQAAWETQQQ 218
Cdd:PTZ00121 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEA------EEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 219 fallQTEVRRLEGDLDtvRRERDALQLEmSLVQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLR--DHHR 296
Cdd:PTZ00121 1684 ----EEDEKKAAEALK--KEAEEAKKAE-ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKkdEEEK 1756
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039736647 297 KQLQELsgQHQQELAAQLAQFKVEMADREErqqqVAQDYELRLAREQARVRDLKSGNQQLEE 358
Cdd:PTZ00121 1757 KKIAHL--KKEEEKKAEEIRKEKEAVIEEE----LDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
41-358 |
6.12e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 6.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 41 KKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQE---ERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQ 117
Cdd:pfam07888 28 RAELLQNRLEECLQERAELLQAQEAANRQREKEKERykrDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELS 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 118 REKEALEEERQALTLRLEVEQQQCRTLqeERDEARAGQLSEHRKLEALQVALQEERQ-AWIKQEHQLKERLQALQEEGQA 196
Cdd:pfam07888 108 ASSEELSEEKDALLAQRAAHEARIREL--EEDIKTLTQRVLERETELERMKERAKKAgAQRKEEEAERKQLQAKLQQTEE 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 197 QLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDLDTVRR---ERDALQLEMSLVQARYESqriqmeselavqleqrv 273
Cdd:pfam07888 186 ELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRkeaENEALLEELRSLQERLNA----------------- 248
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 274 TERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQeLAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGN 353
Cdd:pfam07888 249 SERKVEGLGEELSSMAAQRDRTQAELHQARLQAAQ-LTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAEL 327
|
....*
gi 1039736647 354 QQLEE 358
Cdd:pfam07888 328 QRLEE 332
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
140-369 |
8.48e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 42.72 E-value: 8.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 140 QCRTLQEERDEARAGQLSEHRKLEALQVALQE-ERQAWIKQEHQLKERLQAL-QEEGQAQLEREKGNSQREAQAAW---- 213
Cdd:PRK02224 160 QLGKLEEYRERASDARLGVERVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLeSELAELDEEIERYEEQREQARETrdea 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 214 --------ETQQQFALLQTEVRRLEGDLDTVRRERDALqlemslvqaryeSQRIQMESELAVQLEQRVTERLAEAQENSL 285
Cdd:PRK02224 240 devleeheERREELETLEAEIEDLRETIAETEREREEL------------AEEVRDLRERLEELEEERDDLLAEAGLDDA 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 286 RQAASLrdhhrkqlqelsgQHQQELAAQlaqfKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVE 365
Cdd:PRK02224 308 DAEAVE-------------ARREELEDR----DEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELES 370
|
....
gi 1039736647 366 RLQA 369
Cdd:PRK02224 371 ELEE 374
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
127-340 |
8.77e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 8.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 127 RQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEgQAQLEREKgNSQ 206
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAE-LEELREEL-EKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 207 REAQAAWETQQQFALLQTEVRRLEGDLDTVRRERDAL-QLEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQENSL 285
Cdd:COG4717 122 EKLLQLLPLYQELEALEAELAELPERLEELEERLEELrELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL 201
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1039736647 286 RQAASLRDHHRKQLQELSGQHQQeLAAQLAQFKVEMADREERQQQVAQDYELRLA 340
Cdd:COG4717 202 EELQQRLAELEEELEEAQEELEE-LEEELEQLENELEAAALEERLKEARLLLLIA 255
|
|
| FUSC |
pfam04632 |
Fusaric acid resistance protein family; This family includes a conserved region found in two ... |
220-374 |
9.23e-04 |
|
Fusaric acid resistance protein family; This family includes a conserved region found in two proteins associated with fusaric acid resistance, from Burkholderia cepacia and Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.
Pssm-ID: 428044 [Multi-domain] Cd Length: 655 Bit Score: 42.66 E-value: 9.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 220 ALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAeaqenslrQAASLRDHHRkQL 299
Cdd:pfam04632 174 AALAGAPGAEAFEAARLRLAADILALEALRSHAAFESPRGRARARALRRLLARMLALLP--------RLRSLARLLA-RL 244
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1039736647 300 QELSGQHQQELAAQLAqfkvEMADREERQQQVAQDYELRLAREQAR--VRDLKSGNQQLEEQRAELVERLQAMLQAH 374
Cdd:pfam04632 245 RTEGAGTVPELAALLD----ELAAWEAALAAEALQAALAALRARLRalRPALPLDFDTAAELLARLADLLAELAEAL 317
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
74-271 |
1.00e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 74 LQEERQAAELTRSKQQETVTRLEQSLSEAMEALS--REQEG---------------ARLQQREKEALEEERQALTLRLEV 136
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEefRQKNGlvdlseeaklllqqlSELESQLAEARAELAEAEARLAAL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 137 EQQQCRTLQEERDEARAGQLSEHR-KLEALQVALQEERQAWiKQEH----QLKERLQALQEEGQAQLEREKGNSQREAQA 211
Cdd:COG3206 246 RAQLGSGPDALPELLQSPVIQQLRaQLAELEAELAELSARY-TPNHpdviALRAQIAALRAQLQQEAQRILASLEAELEA 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039736647 212 AwetQQQFALLQTEVRRLEGDLDT---VRRERDALQLEMSLVQARYES--QRIQmESELAVQLEQ 271
Cdd:COG3206 325 L---QAREASLQAQLAQLEARLAElpeLEAELRRLEREVEVARELYESllQRLE-EARLAEALTV 385
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
186-377 |
1.19e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 186 RLQALQEEgQAQLEREKGNSQREAQAAwetQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARyesqriqmesel 265
Cdd:COG1579 11 DLQELDSE-LDRLEHRLKELPAELAEL---EDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEAR------------ 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 266 avqlEQRVTERLAEAQENslRQAASLR---DHHRKQLQELSgQHQQELAAQLAQFKVEMADREERQQQVAQDYELRLARE 342
Cdd:COG1579 75 ----IKKYEEQLGNVRNN--KEYEALQkeiESLKRRISDLE-DEILELMERIEELEEELAELEAELAELEAELEEKKAEL 147
|
170 180 190
....*....|....*....|....*....|....*
gi 1039736647 343 QARVRDLKSGNQQLEEQRAELVERLQAMLQAHWEE 377
Cdd:COG1579 148 DEELAELEAELEELEAEREELAAKIPPELLALYER 182
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
383-598 |
1.30e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 42.23 E-value: 1.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 383 STTLLPPNPQAPLAEPSSPGPLEPEKgERRTWAMPPMAVALKPVLQQSrevkgdvpgAPSVLCSTSPDLSLLLGPPFQNQ 462
Cdd:PHA03247 2825 AGPLPPPTSAQPTAPPPPPGPPPPSL-PLGGSVAPGGDVRRRPPSRSP---------AAKPAAPARPPVRRLARPAVSRS 2894
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 463 NSFQPLEPKPDVTPPTAGPFSALEAFTDDHRAERPFPEEDPGSDGDARLPPasqleglknflqqllETAPQSNGNPSADL 542
Cdd:PHA03247 2895 TESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAP---------------TTDPAGAGEPSGAV 2959
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1039736647 543 LLPKAGsrAVSSWEEAPQVPRLPPPVHKTKVPLAMASSLfRVHGLPSTNLQGSGLS 598
Cdd:PHA03247 2960 PQPWLG--ALVPGRVAVPRFRVPQPAPSREAPASSTPPL-TGHSLSRVSSWASSLA 3012
|
|
| CCDC73 |
pfam15818 |
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil ... |
67-361 |
1.31e-03 |
|
Coiled-coil domain-containing protein 73 family; CCDC73 is a family of eukaryotic coiled-coil containing proteins. The function is not known. The alternative name is sarcoma antigen NY-SAR-79.
Pssm-ID: 464893 [Multi-domain] Cd Length: 1048 Bit Score: 42.24 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 67 RTEVLRGLQE--ERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGarLQQREKEA--------------LEEERQAL 130
Cdd:pfam15818 6 KTSLLEALEElrMRREAETQYEEQIGKIIVETQELKWQKETLQNQKET--LAKQHKEAmavfkkqlqmkmcaLEEEKGKY 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 131 TLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAwiKQEHQLK----ERLQA-------LQEEGQAQLE 199
Cdd:pfam15818 84 QLATEIKEKEIEGLKETLKALQVSKYSLQKKVSEMEQKLQLHLLA--KEDHHKQlneiEKYYAtitgqfgLVKENHGKLE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 200 RekgNSQREAQ-----AAWETQQQFAL--LQTEVRRLEGDL------DTVRRERDALQLEMSLVQARYESQRIQMESEla 266
Cdd:pfam15818 162 Q---NVQEAIQlnkrlSALNKKQESEIcsLKKELKKVTSDLikskvtCQYKMGEENINLTIKEQKFQELQERLNMELE-- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 267 vqLEQRVTERLAEAQEnslrqaaslrdhhRKQLQELSGQHQQELAAQLAQFKVEMADR----EERQQQVAQDYELRlaRE 342
Cdd:pfam15818 237 --LNKKINEEITHIQE-------------EKQDIIISFQHMQQLLQQQTQANTEMEAElkalKENNQTLERDNELQ--RE 299
|
330
....*....|....*....
gi 1039736647 343 QARVRDLKSGNQQLEEQRA 361
Cdd:pfam15818 300 KVKENEEKFLNLQNEHEKA 318
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
83-209 |
1.48e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.69 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 83 LTRSKQQETVTRLEQSLSEA-MEALSREQEgARLQQRE---KEALEEERQALTLRLEVEQQQCRTLQEERdearagQLSE 158
Cdd:PRK12704 28 IAEAKIKEAEEEAKRILEEAkKEAEAIKKE-ALLEAKEeihKLRNEFEKELRERRNELQKLEKRLLQKEE------NLDR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1039736647 159 H-RKLEALQVALQEERQAWIKQEHQLKER---LQALQEEGQAQLEREKGNSQREA 209
Cdd:PRK12704 101 KlELLEKREEELEKKEKELEQKQQELEKKeeeLEELIEEQLQELERISGLTAEEA 155
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
86-369 |
1.55e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 86 SKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCrtlqEERDEARAGQLSEHRKLEAL 165
Cdd:pfam01576 1 TRQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELC----AEAEEMRARLAARKQELEEI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 166 QVALQ---EERQAWIKQEHQLKERLQALQEEGQAQLEREKGNSQReaqaaweTQQQFALLQTEVRRLEGDLDTVRRERDA 242
Cdd:pfam01576 77 LHELEsrlEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQK-------LQLEKVTTEAKIKKLEEDILLLEDQNSK 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 243 LQLEMSLVQARY---------ESQRIQMESELAVQLEQRVTErLAEAQENSLRQAASLRDHHRKQLQELSGQHQQ--ELA 311
Cdd:pfam01576 150 LSKERKLLEERIseftsnlaeEEEKAKSLSKLKNKHEAMISD-LEERLKKEEKGRQELEKAKRKLEGESTDLQEQiaELQ 228
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1039736647 312 AQLAQFKVEMADREERqqqvAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQA 369
Cdd:pfam01576 229 AQIAELRAQLAKKEEE----LQAALARLEEETAQKNNALKKIRELEAQISELQEDLES 282
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
74-367 |
1.68e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 74 LQEERQAAELTRSKQQE---------TVTRLEQSLSEAMEALSreQEGARLQ-QREKEALEEERQALTLRLEVEQQQCRT 143
Cdd:PRK10929 112 LQVSSQLLEKSRQAQQEqdrareisdSLSQLPQQQTEARRQLN--EIERRLQtLGTPNTPLAQAQLTALQAESAALKALV 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 144 lqeerDEARAGQLSEHRKLE--ALQVALQEerqawiKQEHQLKERLQALQEEGQAQlerekgnSQREAQAAWETQQQFAl 221
Cdd:PRK10929 190 -----DELELAQLSANNRQElaRLRSELAK------KRSQQLDAYLQALRNQLNSQ-------RQREAERALESTELLA- 250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 222 lqtevrRLEGDLDTVRRERdaLQLEMSLVQARyeSQRIQMESELAVQleqrvtERLAEAQENSLRQAASLRdhhRKQLQE 301
Cdd:PRK10929 251 ------EQSGDLPKSIVAQ--FKINRELSQAL--NQQAQRMDLIASQ------QRQAASQTLQVRQALNTL---REQSQW 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 302 LSGQ------------------HQQELAAQLAQFKV------EMADREERQQQVAQDYELRLAREQARVRDlksgnQQLE 357
Cdd:PRK10929 312 LGVSnalgealraqvarlpempKPQQLDTEMAQLRVqrlryeDLLNKQPQLRQIRQADGQPLTAEQNRILD-----AQLR 386
|
330
....*....|
gi 1039736647 358 EQRaELVERL 367
Cdd:PRK10929 387 TQR-ELLNSL 395
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
15-233 |
1.88e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.48 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSL--QTRVLELQQQLAVAV-AADHKKDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQQET 91
Cdd:COG5185 308 KKATESLeeQLAAAEAEQELEESKrETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSKSSEELDSFKDTIE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 92 VTRLE------QSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARagQLSEHRKLEAL 165
Cdd:COG5185 388 STKESldeipqNQRGYAQEILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVM--READEESQSRL 465
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039736647 166 QVALQEERQAWIKQEHQLKERLQALQE---EGQAQLEREKGNSQREAQAAWETQQQFALLQTEVRRLEGDL 233
Cdd:COG5185 466 EEAYDEINRSVRSKKEDLNEELTQIESrvsTLKATLEKLRAKLERQLEGVRSKLDQVAESLKDFMRARGYA 536
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
63-350 |
2.08e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 41.06 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 63 HEAERTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSE-----AMEALSREQEGARLQQREKEALEEERQALTLRLEVE 137
Cdd:pfam13868 46 DEMMEEERERALEEEEEKEEERKEERKRYRQELEEQIEEreqkrQEEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQ 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 138 QQ-------QCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAWIKQEHQLKERLQALQEEGQAQLEREKgNSQREAQ 210
Cdd:pfam13868 126 RQlreeideFNEEQAEWKELEKEEEREEDERILEYLKEKAEREEEREAEREEIEEEKEREIARLRAQQEKAQ-DEKAERD 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 211 AAWETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLvQARYESQRIQMESELAVQLEQRVTERLAEAQENSLRQAAs 290
Cdd:pfam13868 205 ELRAKLYQEEQERKERQKEREEAEKKARQRQELQQAREE-QIELKERRLAEEAEREEEEFERMLRKQAEDEEIEQEEAE- 282
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 291 lrdhhrkQLQELSGQHQQELAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLK 350
Cdd:pfam13868 283 -------KRRMKRLEHRRELEKQIEEREEQRAAEREEELEEGERLREEEAERRERIEEER 335
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
15-275 |
2.09e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.48 E-value: 2.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 15 ERHIQSLQTRVLELQQQLAVAVAADHKKDLMIEQ-------LDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSK 87
Cdd:COG3096 835 EAELAALRQRRSELERELAQHRAQEQQLRQQLDQlkeqlqlLNKLLPQANLLADETLADRLEELREELDAAQEAQAFIQQ 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 88 QQETVTRLEQSLSeameALSRE-QEGARLQQREKEALEEERQAltlrleveQQQCRTLQE--ERDEA-----RAGQLSEH 159
Cdd:COG3096 915 HGKALAQLEPLVA----VLQSDpEQFEQLQADYLQAKEQQRRL--------KQQIFALSEvvQRRPHfsyedAVGLLGEN 982
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 160 RKL-EALQVALQEERQAWIKQEHQLKerlQALQEEGQAQLEREKGNSQREAQAawETQQQFA--LLQTEVRRLEGDLDTV 236
Cdd:COG3096 983 SDLnEKLRARLEQAEEARREAREQLR---QAQAQYSQYNQVLASLKSSRDAKQ--QTLQELEqeLEELGVQADAEAEERA 1057
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 1039736647 237 RRERDALQLEMSLVQAR---YESQRIQMESELAvQLEQRVTE 275
Cdd:COG3096 1058 RIRRDELHEELSQNRSRrsqLEKQLTRCEAEMD-SLQKRLRK 1098
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
97-247 |
2.63e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 97 QSLSEAMEALSREQEGARLQQREKEALEEERQaltlrLEVEQQQCRTLQEERDEaragqlsehrkLEALQVALQEERqaw 176
Cdd:COG2433 376 LSIEEALEELIEKELPEEEPEAEREKEHEERE-----LTEEEEEIRRLEEQVER-----------LEAEVEELEAEL--- 436
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039736647 177 ikqeHQLKERLQALQEEgqaqLEREKGNSQREAqaawETQQQFALLQTEVRRLEGDLDTVRRERDALQLEM 247
Cdd:COG2433 437 ----EEKDERIERLERE----LSEARSEERREI----RKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| CusB_dom_1 |
pfam00529 |
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli ... |
222-368 |
2.91e-03 |
|
Cation efflux system protein CusB domain 1; The cation efflux system protein CusB from E. coli can be divided into four different domains, the first three domains of the protein are mostly beta-strands and the fourth forms an all alpha-helical domain. This entry represents the first beta-domain (domain 1) of CusB and it is formed by the N and C-terminal ends of the polypeptide (residues 89-102 and 324-385). CusB is part of the copper-transporting efflux system CusCFBA. This domain can also be found in other membrane-fusion proteins, such as HlyD, MdtN, MdtE and AaeA. HlyD is a component of the prototypical alpha-haemolysin (HlyA) bacterial type I secretion system, along with the other components HlyB and TolC. HlyD is anchored in the cytoplasmic membrane by a single transmembrane domain and has a large periplasmic domain within the carboxy-terminal 100 amino acids, HlyB and HlyD form a stable complex that binds the recombinant protein bearing a C-terminal HlyA signal sequence and ATP in the cytoplasm. HlyD, HlyB and TolC combine to form the three-component ABC transporter complex that forms a trans-membrane channel or pore through which HlyA can be transferred directly to the extracellular medium. Cutinase has been shown to be transported effectively through this pore.
Pssm-ID: 425733 [Multi-domain] Cd Length: 322 Bit Score: 40.48 E-value: 2.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 222 LQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRI-QMESELAVQLEQRVTERLAEAQenslRQAASLRD--HHRKQ 298
Cdd:pfam00529 56 YQAALDSAEAQLAKAQAQVARLQAELDRLQALESELAIsRQDYDGATAQLRAAQAAVKAAQ----AQLAQAQIdlARRRV 131
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 299 LQELSGQHQQELAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQ 368
Cdd:pfam00529 132 LAPIGGISRESLVTAGALVAQAQANLLATVAQLDQIYVQITQSAAENQAEVRSELSGAQLQIAEAEAELK 201
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
62-350 |
2.93e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 2.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 62 RHEAERTEVLRGLQEERQAAELTRSKQQETVTRL----EQSLSEAMEALSREQEgARLQQREKEALEEErqaltLRLEVE 137
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALglppDLSPEELLELLDRIEE-LQELLREAEELEEE-----LQLEEL 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 138 QQQCRTLQeerdeARAGQLSEhrklEALQVALQEERQAwikqeHQLKERLQALQEegqaQLEREKGNSQREAQAAWETQ- 216
Cdd:COG4717 369 EQEIAALL-----AEAGVEDE----EELRAALEQAEEY-----QELKEELEELEE----QLEELLGELEELLEALDEEEl 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 217 -QQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESElavQLEQRVTERLAEAQenSLRQAASLRDHH 295
Cdd:COG4717 431 eEELEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQELE---ELKAELRELAEEWA--ALKLALELLEEA 505
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1039736647 296 RKQLQElsgQHQQELAAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLK 350
Cdd:COG4717 506 REEYRE---ERLPPVLERASEYFSRLTDGRYRLIRIDEDLSLKVDTEDGRTRPVE 557
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
67-369 |
3.36e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.71 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 67 RTEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSR----EQEGARLQQREK----EALEEERQALTLRLEVEQ 138
Cdd:COG5185 266 RLEKLGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIkkatESLEEQLAAAEAeqelEESKRETETGIQNLTAEI 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 139 QQCRTLQEERDEARAGQLSEHRKLEALqvalqEERQAWIKQEHQLKERL-QALQEEGQAQLEREKGNSQREAQAAWETQQ 217
Cdd:COG5185 346 EQGQESLTENLEAIKEEIENIVGEVEL-----SKSSEELDSFKDTIESTkESLDEIPQNQRGYAQEILATLEDTLKAADR 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 218 QFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQMESELAVQLEQRVTERLAEAQE--NSL-RQAASLRDH 294
Cdd:COG5185 421 QIEELQRQIEQATSSNEEVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSKKEDLNEelTQIeSRVSTLKAT 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 295 HRKQLQELSGQHQ---QELAAQLAQFKVEMADRE-------ERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELV 364
Cdd:COG5185 501 LEKLRAKLERQLEgvrSKLDQVAESLKDFMRARGyahilalENLIPASELIQASNAKTDGQAANLRTAVIDELTQYLSTI 580
|
....*
gi 1039736647 365 ERLQA 369
Cdd:COG5185 581 ESQQA 585
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
87-211 |
4.71e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.08 E-value: 4.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 87 KQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQcrtlqeeRDEARAGQLSEHRKLEALQ 166
Cdd:PRK12705 27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQ-------REEERLVQKEEQLDARAEK 99
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 1039736647 167 VALQEERQawIKQEHQLKERLQALQEEGQ---AQLEREKGNSQREAQA 211
Cdd:PRK12705 100 LDNLENQL--EEREKALSARELELEELEKqldNELYRVAGLTPEQARK 145
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
42-218 |
5.50e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 39.52 E-value: 5.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 42 KDLMIEQLDKTLARVVEGWNRHEAERTEVLRGLQEERQAAELTRSKQQEtvtRLEQSLSEAMEALSREQEGARLQQREKE 121
Cdd:pfam13868 100 REQMDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKE---EEREEDERILEYLKEKAEREEEREAERE 176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 122 ALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEHRKLEALQVALQEERQAwIKQEHQLKERLQALQEEGQAQLERE 201
Cdd:pfam13868 177 EIEEEKEREIARLRAQQEKAQDEKAERDELRAKLYQEEQERKERQKEREEAEKK-ARQRQELQQAREEQIELKERRLAEE 255
|
170
....*....|....*..
gi 1039736647 202 KGNSQREAQAAWETQQQ 218
Cdd:pfam13868 256 AEREEEEFERMLRKQAE 272
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
113-192 |
5.60e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.20 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 113 ARLQQREKEALEEERQALTLRLEVE------QQQCRTLQEERDEARAGQLSEHR------KLEALQV-----ALQEERQA 175
Cdd:PRK00409 523 ASLEELERELEQKAEEAEALLKEAEklkeelEEKKEKLQEEEDKLLEEAEKEAQqaikeaKKEADEIikelrQLQKGGYA 602
|
90
....*....|....*..
gi 1039736647 176 WIKqEHQLKERLQALQE 192
Cdd:PRK00409 603 SVK-AHELIEARKRLNK 618
|
|
| PspA |
COG1842 |
Phage shock protein A [Transcription, Signal transduction mechanisms]; |
138-321 |
5.79e-03 |
|
Phage shock protein A [Transcription, Signal transduction mechanisms];
Pssm-ID: 441447 [Multi-domain] Cd Length: 217 Bit Score: 38.65 E-value: 5.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 138 QQQCRTLQEERDEAR---AGQLSEHRKLEALQVALQEERQAWikqEHQLKERLQALQEE-GQAQLEREKGNsqrEAQAAw 213
Cdd:COG1842 29 DQAIRDMEEDLVEARqalAQVIANQKRLERQLEELEAEAEKW---EEKARLALEKGREDlAREALERKAEL---EAQAE- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 214 ETQQQFALLQTEVRRLEGDLDTVRRERDALQLEMSLVQARYESQRIQ---------MESELAV----QLEQRVTERLAEA 280
Cdd:COG1842 102 ALEAQLAQLEEQVEKLKEALRQLESKLEELKAKKDTLKARAKAAKAQekvnealsgIDSDDATsaleRMEEKIEEMEARA 181
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1039736647 281 QE-NSLRQAASLRDhhrkQLQELSGQHqqELAAQLAQFKVEM 321
Cdd:COG1842 182 EAaAELAAGDSLDD----ELAELEADS--EVEDELAALKAKM 217
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
74-371 |
5.91e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.50 E-value: 5.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 74 LQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEALEEERQALTLRLEVEQQQCRTLQEERDEARA 153
Cdd:COG4372 15 LFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 154 GQLSEHRKLEALQV---ALQEERQAWIKQEHQLKERLQALQEEgQAQLEREKGNSQREAQaawETQQQFALLQTEVRRLE 230
Cdd:COG4372 95 ELAQAQEELESLQEeaeELQEELEELQKERQDLEQQRKQLEAQ-IAELQSEIAEREEELK---ELEEQLESLQEELAALE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 231 GDLDTVRRERDALQLEMSLVQARyesQRIQMESELAVQLEQRVTERLAEAQENSLRQAASLRDHHRKQLQELSGQHQQEL 310
Cdd:COG4372 171 QELQALSEAEAEQALDELLKEAN---RNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEED 247
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039736647 311 AAQLAQFKVEMADREERQQQVAQDYELRLAREQARVRDLKSGNQQLEEQRAELVERLQAML 371
Cdd:COG4372 248 KEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALS 308
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
94-185 |
6.44e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 39.68 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 94 RLEQsLSEAMEALSREQEGA---RLQQREKE--ALEEERQALTLRLEVEQQQCRTLQEERDEARAgqlsEHRKLEALQVA 168
Cdd:COG0542 419 RLEQ-LEIEKEALKKEQDEAsfeRLAELRDElaELEEELEALKARWEAEKELIEEIQELKEELEQ----RYGKIPELEKE 493
|
90
....*....|....*..
gi 1039736647 169 LQEERQAWIKQEHQLKE 185
Cdd:COG0542 494 LAELEEELAELAPLLRE 510
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
27-176 |
6.78e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 39.47 E-value: 6.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 27 ELQQQLAVAVAADHKkdlmiEQLDKTLARVVEGWNRHEAE-RTEVLRGLQEERQAAELTRSKQQETV----TRLEQSLSE 101
Cdd:COG2268 207 EAERETEIAIAQANR-----EAEEAELEQEREIETARIAEaEAELAKKKAEERREAETARAEAEAAYeiaeANAEREVQR 281
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039736647 102 AMEALSREQEgARLQQREKEaLEEERQALTLRLEVEQQQCRTLQEERDEARAGQLsehrKLEALQVALQEERQAW 176
Cdd:COG2268 282 QLEIAERERE-IELQEKEAE-REEAELEADVRKPAEAEKQAAEAEAEAEAEAIRA----KGLAEAEGKRALAEAW 350
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
160-275 |
7.07e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 39.68 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 160 RKLEALQVALQEERQAWIK-QEHQLKERLQALQEEgQAQLEREkgnsQREAQAAWETQQQfalLQTEVRRLEGDLDTVRR 238
Cdd:COG0542 414 DELERRLEQLEIEKEALKKeQDEASFERLAELRDE-LAELEEE----LEALKARWEAEKE---LIEEIQELKEELEQRYG 485
|
90 100 110
....*....|....*....|....*....|....*..
gi 1039736647 239 ERDALQLEMSLVQARyesqriqmESELAVQLEQRVTE 275
Cdd:COG0542 486 KIPELEKELAELEEE--------LAELAPLLREEVTE 514
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
94-193 |
8.09e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 39.42 E-value: 8.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 94 RLEQSLSEAmEALSREQEGARLQ-QREKEALEEERQALTLRLEVEQQQcrTLQEERDEArAGQLSEHRKLEALQVALQEE 172
Cdd:PRK00409 531 ELEQKAEEA-EALLKEAEKLKEElEEKKEKLQEEEDKLLEEAEKEAQQ--AIKEAKKEA-DEIIKELRQLQKGGYASVKA 606
|
90 100
....*....|....*....|..
gi 1039736647 173 RQawIKQEH-QLKERLQALQEE 193
Cdd:PRK00409 607 HE--LIEARkRLNKANEKKEKK 626
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
114-255 |
9.18e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 37.60 E-value: 9.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 114 RLQQREkEALEEERQALTLRLEVEQQQCRTLQEERDEARAGQLSEhrkLEALQVALQEERQAWIKQEHQLKERLQALQEE 193
Cdd:pfam08614 11 RLLDRT-ALLEAENAKLQSEPESVLPSTSSSKLSKASPQSASIQS---LEQLLAQLREELAELYRSRGELAQRLVDLNEE 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039736647 194 GQAQLEREKGNSQREAQAawetQQQFALLQTEVRRLEGDL-------DTVRRERDALQLEMSLVQARYE 255
Cdd:pfam08614 87 LQELEKKLREDERRLAAL----EAERAQLEEKLKDREEELrekrklnQDLQDELVALQLQLNMAEEKLR 151
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-357 |
9.30e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 39.35 E-value: 9.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 57 VEGWNRHEAER---TEVLRGLQEERQAAELTRSKQQETVTRLEQSLSEAMEALSREQEGARLQQREKEAL---EEERQAL 130
Cdd:PTZ00121 1052 IDGNHEGKAEAkahVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKkkaEDARKAE 1131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 131 TLRlevEQQQCRTLQEERDEARAGQLSEHRKLEalqvalqEERQAWIKQEHQLKERLQALQ--EEGQAQLEREKGNSQRE 208
Cdd:PTZ00121 1132 EAR---KAEDARKAEEARKAEDAKRVEIARKAE-------DARKAEEARKAEDAKKAEAARkaEEVRKAEELRKAEDARK 1201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 209 AQAAWETQQQFALlqTEVRRLEGD--LDTVRRERDALQLEMSLVQARYESQRIQMESELAVQL-------------EQRV 273
Cdd:PTZ00121 1202 AEAARKAEEERKA--EEARKAEDAkkAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMahfarrqaaikaeEARK 1279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039736647 274 TERLAEAQEnsLRQAASLRD-HHRKQLQELSGQHQQELAAQLAQFKVEMADR-----EERQQQVAQDYELRLAREQARVR 347
Cdd:PTZ00121 1280 ADELKKAEE--KKKADEAKKaEEKKKADEAKKKAEEAKKADEAKKKAEEAKKkadaaKKKAEEAKKAAEAAKAEAEAAAD 1357
|
330
....*....|
gi 1039736647 348 DLKSGNQQLE 357
Cdd:PTZ00121 1358 EAEAAEEKAE 1367
|
|
| |
