|
Name |
Accession |
Description |
Interval |
E-value |
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
57-267 |
5.03e-71 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 235.33 E-value: 5.03e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 57 VIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYK 136
Cdd:pfam15665 1 VIYALNTKNDEHEAEIQALKEAHEEEIQQILAETREKILQYKSKIGEELDLKRRIQTLEESLEQHERMKRQALTEFEQYK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 137 RRVEDMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVK 216
Cdd:pfam15665 81 RRVEERELKAEAEHRQRVVELSREVEEAKRAFEEKLESFEQLQAQFEQEKRKALEELRAKHRQEIQELLTTQRAQSASSL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039734433 217 LGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFYERELD 267
Cdd:pfam15665 161 AEQEKLEELHKAELESLRKEVEDLRKEKKKLAEEYEQKLSKAQAFYERELE 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
364-908 |
4.50e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 4.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 364 VESELAAARERLQEQAS---------------DLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQ 428
Cdd:COG1196 194 ILGELERQLEPLERQAEkaeryrelkeelkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 429 SRTQSLDEEQKQQVLELEKKVNEAKRTQQE--YYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASR 506
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDiaRLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 507 DKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERL 586
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 587 QSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQEL----RLQ 662
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFlegvKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 663 HEEDKKSAMSQLLQ------------LKEREKNAARDSWQKKVEDLLNQISLLKQNLELQLCQSQTSLQQLQAQFTQERQ 730
Cdd:COG1196 514 LLLAGLRGLAGAVAvligveaayeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 731 RLTQELEELEEQHQQRHKSLKEAHV---LAFQTMEEE-KEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQEL 806
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLgdtLLGRTLVAArLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 807 QTLRFELEDEGKAMLASLRSELNHQHAASIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEE--LRHREH 884
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEelLEEEAL 753
|
570 580
....*....|....*....|....
gi 1039734433 885 HITDLDKEVQHLHENINTLTKELE 908
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIE 777
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
278-1005 |
1.39e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 278 ESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMAL 357
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 358 -------LSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSR 430
Cdd:TIGR02168 322 eaqleelESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 431 TQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHgKTLEELARKHHMAIEAVhsNASRDKIK 510
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ-EELERLEEALEELREEL--EEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 511 LQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSAnQEIGRLQDLVR---KSEQGLGSAEG------LISSLQD 581
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS-GILGVLSELISvdeGYEAAIEAALGgrlqavVVENLNA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 582 SQERLQSELDLTKGR-----LKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDL--EIKWTENLRQ---E 651
Cdd:TIGR02168 558 AKKAIAFLKQNELGRvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNaleL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 652 CSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLELQlcqsqTSLQQLQAQFTQERQR 731
Cdd:TIGR02168 638 AKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAEL-----EKALAELRKELEELEE 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 732 LTQELEELEEQHQQRHKSLKEahVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKDAhRESMEGFRVEMEQELQTLRF 811
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRK--DLARLEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELAEAEAEIEELEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 812 ELEdEGKAMLASLRSELNHQHAAsidllrhshHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDK 891
Cdd:TIGR02168 790 QIE-QLKEELKALREALDELRAE---------LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 892 EVQHLHENINTLTKELELKGKEilrvRSESNQQMRLHEQDL----NKRLEKELDVMTADH-LREKNIMRADFN------- 959
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNE----RASLEEALALLRSELeelsEELRELESKRSELRReLEELREKLAQLElrlegle 935
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 1039734433 960 -KTNELLKEINAALQVSLEDMEEKYLMRESRPEDIQ-MIAELKSLITE 1005
Cdd:TIGR02168 936 vRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARrRLKRLENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
30-599 |
3.13e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 30 AQLAGHNMDYSQDMHLKMSKKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQIlaetrekillyKSKVTEELDLRR 109
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL-----------EEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 110 KIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQLcAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAA 189
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 190 LEDLRTTHRLEVQEL-LKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDN 268
Cdd:COG1196 375 AEAEEELEELAEELLeALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-EEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 269 LKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKcqKLQMALATAENNVQVLQKQLD 348
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV--KAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 349 DAKEGEMALlskhkeVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQ 428
Cdd:COG1196 532 VEAAYEAAL------EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 429 SRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDK 508
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 509 IKLQTELEEQYKKEKLSLEEDK--NQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERL 586
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERelAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|...
gi 1039734433 587 QSELDLTKGRLKE 599
Cdd:COG1196 766 ERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
115-818 |
1.72e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 115 EASLEDHMKMKQEALTEFEAykRRVEDMQLCAEAQHVQ--RIVTMSREVEEIRKKFEER----LRSFGQLQVQFENDKQA 188
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEA--RKAEDARKAEEARKAEdaKRVEIARKAEDARKAEEARkaedAKKAEAARKAEEVRKAE 1191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 189 ALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEK-AEGLHRMEvEALNNTVKELRLEKKQLIEEYEGKLSKAQVFYERELD 267
Cdd:PTZ00121 1192 ELRKAEDARKAEAARKAEEERKAEEARKAEDAKkAEAVKKAE-EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 268 NLKRSQLFTAESLQASRDKEA--DLRK-------EFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAEN 338
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKadEAKKaeekkkaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 339 NVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEqasdlVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLC 418
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE-----KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 419 QLEEERAFLQSRTQSldeEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLE--GEVAQLNEAHGKTLEELARKHHMA 496
Cdd:PTZ00121 1426 KAEEKKKADEAKKKA---EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkAEEAKKADEAKKKAEEAKKKADEA 1502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 497 IEAVHSNASRDKIKlqtELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSAnQEIGRLQDlVRKSEQGLGSAEGLI 576
Cdd:PTZ00121 1503 KKAAEAKKKADEAK---KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA-EELKKAEE-KKKAEEAKKAEEDKN 1577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 577 SSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEE---KLRVDRMAHDLEIKWTENLR--QE 651
Cdd:PTZ00121 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekkKVEQLKKKEAEEKKKAEELKkaEE 1657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 652 CSKLR-QELRLQHEEDKKSAmsQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLElqlcqsqtslqqlqaqftqERQ 730
Cdd:PTZ00121 1658 ENKIKaAEEAKKAEEDKKKA--EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE-------------------EKK 1716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 731 RLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRaleTHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLR 810
Cdd:PTZ00121 1717 KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK---KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
....*...
gi 1039734433 811 FELEDEGK 818
Cdd:PTZ00121 1794 MEVDKKIK 1801
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
183-1018 |
1.98e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 183 ENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFY 262
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 263 ERELDNLKRSQLFTAESLQASRDKEaDLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQV 342
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQE-EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 343 LQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEE 422
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 423 ERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVA----QLNEAHGKTLEELARKHHMAIE 498
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLlketQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 499 AVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQ-GLGSAEGLIS 577
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRaLTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 578 SLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQ 657
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 658 ELRLQHEEDKKSAmSQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLELQLCQSQTSLQQLQAQFTQERQRLTQELE 737
Cdd:pfam02463 660 EKSEVKASLSELT-KELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 738 ELEEQHQQRHKSLKEAHvlafQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEG 817
Cdd:pfam02463 739 KLLKQKIDEEEEEEEKS----RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 818 KAMLASLRSELNHQHAasIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLH 897
Cdd:pfam02463 815 ELLEEEQLLIEQEEKI--KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 898 ENINTLTKELELKGKEILRVRSESNQQMrLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQVSLE 977
Cdd:pfam02463 893 EKEKEEKKELEEESQKLNLLEEKENEIE-ERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1039734433 978 DMEEKYLMRESRPEDIQ----MIAELKSLITERDQVIKKLIQKKK 1018
Cdd:pfam02463 972 LGKVNLMAIEEFEEKEErynkDELEKERLEEEKKKLIRAIIEETC 1016
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-451 |
6.92e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 6.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 107 LRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQlcaeaqhvQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENdK 186
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE--------EDLSSLEQEIENVKSELKELEARIEELEEDLHK-L 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 187 QAALEDLrttHRLEVQELLKSQQNHSSSVklgqekaEGLHRMEVEALNNTvkELRLEKKQLIEEYEGKLSKAQVFYEREL 266
Cdd:TIGR02169 778 EEALNDL---EARLSHSRIPEIQAELSKL-------EEEVSRIEARLREI--EQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 267 DNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQ 346
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 347 LDdakegemALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVT---IKDLESEKSRANE---RLCQL 420
Cdd:TIGR02169 926 LE-------ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNmlaIQEYEEVLKRLDElkeKRAKL 998
|
330 340 350
....*....|....*....|....*....|.
gi 1039734433 421 EEERAFLQSRTQSLDEEQKQQVLELEKKVNE 451
Cdd:TIGR02169 999 EEERKAILERIEEYEKKKREVFMEAFEAINE 1029
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
49-474 |
2.29e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 49 KKIAQLTKVIYALNTRNDEHDAAIQALKDAHE-----EEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMK 123
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEdkkkaDELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 124 MKQEALTEFEAYKRRVEDMQlcaEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQvQFENDKQAALEDLRTTHRLEVQE 203
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAK---KADEAKKKAEEAKKADEAKKKAEEAKKKADEAK-KAAEAKKKADEAKKAEEAKKADE 1526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 204 LLKSQQ-NHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEG-KLSKAQVFYERELdnlKRSQLFTAESLQ 281
Cdd:PTZ00121 1527 AKKAEEaKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNmALRKAEEAKKAEE---ARIEEVMKLYEE 1603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 282 ASRDKEADLRKEfqGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQmALATAENNVQVLQKQLDDAKEGEMALLSKH 361
Cdd:PTZ00121 1604 EKKMKAEEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 362 KEVESELAAARERLQEQASdlvlkashigmlQATQMTQevtIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQ 441
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAE------------EAKKAEE---LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
|
410 420 430
....*....|....*....|....*....|...
gi 1039734433 442 VLELEKKVNEAKRTQQEYYEMELKNLQNRLEGE 474
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
274-449 |
1.10e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 274 LFTAESLQASRDKEADLRKEFQGQEAILRKT---IGKLKTELQMVQDEASSLLDKCQkLQMALATAENNVQVLQKQLDDA 350
Cdd:PRK11281 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAqaeLEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 351 KEGEMALLSKHKEVESELAAARERLQE--------QASDLVLKASHIGMLQATQ-------------MTQEVTIKDL-ES 408
Cdd:PRK11281 148 NSQLVSLQTQPERAQAALYANSQRLQQirnllkggKVGGKALRPSQRVLLQAEQallnaqndlqrksLEGNTQLQDLlQK 227
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1039734433 409 EKSRANERLCQLEEERAFLQS------RTQSldEEQKQQVLELEKKV 449
Cdd:PRK11281 228 QRDYLTARIQRLEHQLQLLQEainskrLTLS--EKTVQEAQSQDEAA 272
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
232-471 |
3.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 232 ALNNTVKELRLEKKQL---IEEYEGKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLrKEFQGQEAILRKTIGKL 308
Cdd:COG4942 17 AQADAAAEAEAELEQLqqeIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL-AALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 309 KTELQMVQDEASSLLDKCQKLQ-----MALATAENNVQVLQKQ--LDDAKEGEMALLSKHKEVESELAAARERLQEQASD 381
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGrqpplALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 382 LvlkashigmlQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYE 461
Cdd:COG4942 176 L----------EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
250
....*....|
gi 1039734433 462 MELKNLQNRL 471
Cdd:COG4942 246 AGFAALKGKL 255
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| FAM184 |
pfam15665 |
Family with sequence similarity 184, A and B; The function of FAM184 is not known. |
57-267 |
5.03e-71 |
|
Family with sequence similarity 184, A and B; The function of FAM184 is not known.
Pssm-ID: 464788 [Multi-domain] Cd Length: 211 Bit Score: 235.33 E-value: 5.03e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 57 VIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYK 136
Cdd:pfam15665 1 VIYALNTKNDEHEAEIQALKEAHEEEIQQILAETREKILQYKSKIGEELDLKRRIQTLEESLEQHERMKRQALTEFEQYK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 137 RRVEDMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVK 216
Cdd:pfam15665 81 RRVEERELKAEAEHRQRVVELSREVEEAKRAFEEKLESFEQLQAQFEQEKRKALEELRAKHRQEIQELLTTQRAQSASSL 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1039734433 217 LGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFYERELD 267
Cdd:pfam15665 161 AEQEKLEELHKAELESLRKEVEDLRKEKKKLAEEYEQKLSKAQAFYERELE 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
364-908 |
4.50e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 4.50e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 364 VESELAAARERLQEQAS---------------DLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQ 428
Cdd:COG1196 194 ILGELERQLEPLERQAEkaeryrelkeelkelEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 429 SRTQSLDEEQKQQVLELEKKVNEAKRTQQE--YYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASR 506
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDiaRLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 507 DKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERL 586
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 587 QSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQEL----RLQ 662
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFlegvKAA 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 663 HEEDKKSAMSQLLQ------------LKEREKNAARDSWQKKVEDLLNQISLLKQNLELQLCQSQTSLQQLQAQFTQERQ 730
Cdd:COG1196 514 LLLAGLRGLAGAVAvligveaayeaaLEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALA 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 731 RLTQELEELEEQHQQRHKSLKEAHV---LAFQTMEEE-KEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQEL 806
Cdd:COG1196 594 RGAIGAAVDLVASDLREADARYYVLgdtLLGRTLVAArLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAA 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 807 QTLRFELEDEGKAMLASLRSELNHQHAASIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEE--LRHREH 884
Cdd:COG1196 674 LLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEelLEEEAL 753
|
570 580
....*....|....*....|....
gi 1039734433 885 HITDLDKEVQHLHENINTLTKELE 908
Cdd:COG1196 754 EELPEPPDLEELERELERLEREIE 777
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-793 |
3.29e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.12 E-value: 3.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 245 KQLIEEYEGKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLD 324
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 325 KCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIK 404
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 405 DLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGK 484
Cdd:COG1196 376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 485 TLEELARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRK 564
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 565 SEQGLGSAEG------LISSLQDSQERLQSELDLTKGR-----LKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRV 633
Cdd:COG1196 536 YEAALEAALAaalqniVVEDDEVAAAAIEYLKAAKAGRatflpLDKIRARAALAAALARGAIGAAVDLVASDLREADARY 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 634 DRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLELQLCQ 713
Cdd:COG1196 616 YVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELEL 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 714 SQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRE 793
Cdd:COG1196 696 EEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
278-1005 |
1.39e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.39e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 278 ESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMAL 357
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 358 -------LSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSR 430
Cdd:TIGR02168 322 eaqleelESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 431 TQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHgKTLEELARKHHMAIEAVhsNASRDKIK 510
Cdd:TIGR02168 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQ-EELERLEEALEELREEL--EEAEQALD 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 511 LQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSAnQEIGRLQDLVR---KSEQGLGSAEG------LISSLQD 581
Cdd:TIGR02168 479 AAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLS-GILGVLSELISvdeGYEAAIEAALGgrlqavVVENLNA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 582 SQERLQSELDLTKGR-----LKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDL--EIKWTENLRQ---E 651
Cdd:TIGR02168 558 AKKAIAFLKQNELGRvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlgGVLVVDDLDNaleL 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 652 CSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLELQlcqsqTSLQQLQAQFTQERQR 731
Cdd:TIGR02168 638 AKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAEL-----EKALAELRKELEELEE 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 732 LTQELEELEEQHQQRHKSLKEahVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKDAhRESMEGFRVEMEQELQTLRF 811
Cdd:TIGR02168 713 ELEQLRKELEELSRQISALRK--DLARLEAEVEQLEERIAQLSKELTELEAEIEELEER-LEEAEEELAEAEAEIEELEA 789
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 812 ELEdEGKAMLASLRSELNHQHAAsidllrhshHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDK 891
Cdd:TIGR02168 790 QIE-QLKEELKALREALDELRAE---------LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAA 859
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 892 EVQHLHENINTLTKELELKGKEilrvRSESNQQMRLHEQDL----NKRLEKELDVMTADH-LREKNIMRADFN------- 959
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNE----RASLEEALALLRSELeelsEELRELESKRSELRReLEELREKLAQLElrlegle 935
|
730 740 750 760
....*....|....*....|....*....|....*....|....*...
gi 1039734433 960 -KTNELLKEINAALQVSLEDMEEKYLMRESRPEDIQ-MIAELKSLITE 1005
Cdd:TIGR02168 936 vRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARrRLKRLENKIKE 983
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
82-906 |
1.75e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 82 EIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDmqlcaeaqHVQRIVTMSREV 161
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYA--------LANEISRLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 162 EEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQ--------ELLKSQQNHSSSVKLGQEKAEGLHRMEVEAL 233
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKleelkeelESLEAELEELEAELEELESRLEELEEQLETL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 234 NNTVKELRLEKKQL---IEEYEGKLSKAQvfyereldnlKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKT 310
Cdd:TIGR02168 385 RSKVAQLELQIASLnneIERLEARLERLE----------DRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 311 ELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQ-------------- 376
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlselisvdeg 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 377 -EQASDLVLKAShigmLQATQM-TQEVTIKDLESEKSRANERLCQLEEERAflqsRTQSLDEEQKQQVLELEKKVNEAKR 454
Cdd:TIGR02168 535 yEAAIEAALGGR----LQAVVVeNLNAAKKAIAFLKQNELGRVTFLPLDSI----KGTEIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 455 TqqEYYEMELKNLQNRLEGEVAQLNEahGKTLEELARK--HHMAI-----EAVHSNASRDKIKLQTELEEQYKKEKLS-L 526
Cdd:TIGR02168 607 L--VKFDPKLRKALSYLLGGVLVVDD--LDNALELAKKlrPGYRIvtldgDLVRPGGVITGGSAKTNSSILERRREIEeL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 527 EEDKNQLQLELESLKQALGD---KLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDA 603
Cdd:TIGR02168 683 EEKIEELEEKIAELEKALAElrkELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAE 762
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 604 LLNVEAELQQERHEHEQTLATMKEEEKlRVDRMAHDLeikwtENLRQECSKLRQELRLQHEEdkksamsqLLQLKEREKN 683
Cdd:TIGR02168 763 IEELEERLEEAEEELAEAEAEIEELEA-QIEQLKEEL-----KALREALDELRAELTLLNEE--------AANLRERLES 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 684 AARD--SWQKKVEDLLNQISLLKQNLElQLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAhvlafQTM 761
Cdd:TIGR02168 829 LERRiaATERRLEDLEEQIEELSEDIE-SLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL-----SEE 902
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 762 EEEKEKEQRALETHLQqkhsaELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEGKAMLAslrselnhqHAASIDLLRH 841
Cdd:TIGR02168 903 LRELESKRSELRRELE-----ELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA---------LENKIEDDEE 968
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1039734433 842 SHHQELAAAKMELERSIDISRRQSKEhmcrISDLQEELRHREHHITDLDKEVQHLHENINTLTKE 906
Cdd:TIGR02168 969 EARRRLKRLENKIKELGPVNLAAIEE----YEELKERYDFLTAQKEDLTEAKETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
30-599 |
3.13e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 3.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 30 AQLAGHNMDYSQDMHLKMSKKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQIlaetrekillyKSKVTEELDLRR 109
Cdd:COG1196 227 AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELEL-----------EEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 110 KIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQLcAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAA 189
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEE-ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 190 LEDLRTTHRLEVQEL-LKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDN 268
Cdd:COG1196 375 AEAEEELEELAEELLeALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE-EEEEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 269 LKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKcqKLQMALATAENNVQVLQKQLD 348
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV--KAALLLAGLRGLAGAVAVLIG 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 349 DAKEGEMALlskhkeVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQ 428
Cdd:COG1196 532 VEAAYEAAL------EAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 429 SRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDK 508
Cdd:COG1196 606 SDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 509 IKLQTELEEQYKKEKLSLEEDK--NQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERL 586
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERelAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|...
gi 1039734433 587 QSELDLTKGRLKE 599
Cdd:COG1196 766 ERELERLEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
115-818 |
1.72e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 59.00 E-value: 1.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 115 EASLEDHMKMKQEALTEFEAykRRVEDMQLCAEAQHVQ--RIVTMSREVEEIRKKFEER----LRSFGQLQVQFENDKQA 188
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEA--RKAEDARKAEEARKAEdaKRVEIARKAEDARKAEEARkaedAKKAEAARKAEEVRKAE 1191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 189 ALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEK-AEGLHRMEvEALNNTVKELRLEKKQLIEEYEGKLSKAQVFYERELD 267
Cdd:PTZ00121 1192 ELRKAEDARKAEAARKAEEERKAEEARKAEDAKkAEAVKKAE-EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 268 NLKRSQLFTAESLQASRDKEA--DLRK-------EFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAEN 338
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKadEAKKaeekkkaDEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKA 1350
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 339 NVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEqasdlVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLC 418
Cdd:PTZ00121 1351 EAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE-----KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 419 QLEEERAFLQSRTQSldeEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLE--GEVAQLNEAHGKTLEELARKHHMA 496
Cdd:PTZ00121 1426 KAEEKKKADEAKKKA---EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKkkAEEAKKADEAKKKAEEAKKKADEA 1502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 497 IEAVHSNASRDKIKlqtELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSAnQEIGRLQDlVRKSEQGLGSAEGLI 576
Cdd:PTZ00121 1503 KKAAEAKKKADEAK---KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA-EELKKAEE-KKKAEEAKKAEEDKN 1577
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 577 SSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEE---KLRVDRMAHDLEIKWTENLR--QE 651
Cdd:PTZ00121 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekkKVEQLKKKEAEEKKKAEELKkaEE 1657
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 652 CSKLR-QELRLQHEEDKKSAmsQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLElqlcqsqtslqqlqaqftqERQ 730
Cdd:PTZ00121 1658 ENKIKaAEEAKKAEEDKKKA--EEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE-------------------EKK 1716
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 731 RLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRaleTHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLR 810
Cdd:PTZ00121 1717 KAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK---KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
|
....*...
gi 1039734433 811 FELEDEGK 818
Cdd:PTZ00121 1794 MEVDKKIK 1801
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
49-708 |
2.20e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.54 E-value: 2.20e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 49 KKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKV----TEELDLRRKIQVLEASLEDHMKM 124
Cdd:TIGR02169 244 RQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIgeleAEIASLERSIAEKERELEDAEER 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 125 KQEALTEFEAYKRRVEDMQLCAEAQHVQRIVTMSR-------------EVEEIRKKFEERLRSFGQLQVQFENDKQAALE 191
Cdd:TIGR02169 324 LAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEyaelkeeledlraELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 192 DLRTTHRL--EVQELLKSQQNHSSSVK-LGQEKAEGLHRMEVEALNNTVKELRLE---------------KKQLIEEYEG 253
Cdd:TIGR02169 404 LKRELDRLqeELQRLSEELADLNAAIAgIEAKINELEEEKEDKALEIKKQEWKLEqlaadlskyeqelydLKEEYDRVEK 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 254 KLSKAQvfyeRELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKtIGKLKTELQ--------------MVQDEA 319
Cdd:TIGR02169 484 ELSKLQ----RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQ-LGSVGERYAtaievaagnrlnnvVVEDDA 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 320 SSL----LDKCQKLQMALATAENNVQVLQKQL------------------DDAKEGEMALLSKHKEVESELAAARE---- 373
Cdd:TIGR02169 559 VAKeaieLLKRRKAGRATFLPLNKMRDERRDLsilsedgvigfavdlvefDPKYEPAFKYVFGDTLVVEDIEAARRlmgk 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 374 -RLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTqsldEEQKQQVLELEKKVNEA 452
Cdd:TIGR02169 639 yRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSEL----RRIENRLDELSQELSDA 714
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 453 KRTQQeyyemELKNLQNRLEGEVAQLNEahgkTLEELARKhhmaieavHSNASRDKIKLQTELEEqYKKEKLSLEEDKNQ 532
Cdd:TIGR02169 715 SRKIG-----EIEKEIEQLEQEEEKLKE----RLEELEED--------LSSLEQEIENVKSELKE-LEARIEELEEDLHK 776
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 533 LQLELESLKQALG--------DKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDAL 604
Cdd:TIGR02169 777 LEEALNDLEARLShsripeiqAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 605 LNVEA---ELQQERHEHEQTLATMKEE-EKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKER 680
Cdd:TIGR02169 857 ENLNGkkeELEEELEELEAALRDLESRlGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
730 740
....*....|....*....|....*...
gi 1039734433 681 EKNAARDSWQKKVEDLLNQISLLKQNLE 708
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVE 964
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
228-907 |
2.70e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.14 E-value: 2.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 228 MEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDNLkRSQLFTAESLQASRDKE----ADLRKEFQGQEAILRK 303
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELE-ELTAELQELEEKLEEL-RLEVSELEEEIEELQKElyalANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 304 TIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLV 383
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 384 LKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEME 463
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 464 LKNLQNRLEGEVAQLNEAHGK-----TLEELARKHHMAIEAVHSNASRDKIKLQT-----ELEEQYKKEKLS-------- 525
Cdd:TIGR02168 470 LEEAEQALDAAERELAQLQARldsleRLQENLEGFSEGVKALLKNQSGLSGILGVlseliSVDEGYEAAIEAalggrlqa 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 526 -LEEDKNQLQLELESLKQALGDKLT-------SANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTK--- 594
Cdd:TIGR02168 550 vVVENLNAAKKAIAFLKQNELGRVTflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVLvvd 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 595 ------GRLKETKDALLNVEA-----------------------ELQQERHEHEQTLATMKEEEKLRVDRMAhDLEIKwT 645
Cdd:TIGR02168 630 dldnalELAKKLRPGYRIVTLdgdlvrpggvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALA-ELRKE-L 707
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 646 ENLRQECSKLRQELRlQHEEDKKSAMSQLLQLKEREKNAA--RDSWQKKVEDLLNQISLLKQNLE------LQLCQSQTS 717
Cdd:TIGR02168 708 EELEEELEQLRKELE-ELSRQISALRKDLARLEAEVEQLEerIAQLSKELTELEAEIEELEERLEeaeeelAEAEAEIEE 786
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 718 LQQLQAQFTQERQRLTQELEELEeqhqQRHKSLKEahvlAFQTMEEEKEKEQRalETHLQQKHSAELQSLKDAHRESMEG 797
Cdd:TIGR02168 787 LEAQIEQLKEELKALREALDELR----AELTLLNE----EAANLRERLESLER--RIAATERRLEDLEEQIEELSEDIES 856
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 798 FRVEMEqELQTLRFELEDEGKAMLAslrselnhqhaasidlLRHSHHQELAAAKMELErsidISRRQSKEHMCRISDLQE 877
Cdd:TIGR02168 857 LAAEIE-ELEELIEELESELEALLN----------------ERASLEEALALLRSELE----ELSEELRELESKRSELRR 915
|
730 740 750
....*....|....*....|....*....|
gi 1039734433 878 ELRHREHHITDLDKEVQHLHENINTLTKEL 907
Cdd:TIGR02168 916 ELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
183-1018 |
1.98e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 55.36 E-value: 1.98e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 183 ENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQVFY 262
Cdd:pfam02463 181 ETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 263 ERELDNLKRSQLFTAESLQASRDKEaDLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQV 342
Cdd:pfam02463 261 EKEEEKLAQVLKENKEEEKEKKLQE-EELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEE 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 343 LQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEE 422
Cdd:pfam02463 340 LEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLED 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 423 ERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVA----QLNEAHGKTLEELARKHHMAIE 498
Cdd:pfam02463 420 LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLlketQLVKLQEQLELLLSRQKLEERS 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 499 AVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQ-GLGSAEGLIS 577
Cdd:pfam02463 500 QKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRaLTELPLGARK 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 578 SLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECSKLRQ 657
Cdd:pfam02463 580 LRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLA 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 658 ELRLQHEEDKKSAmSQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLELQLCQSQTSLQQLQAQFTQERQRLTQELE 737
Cdd:pfam02463 660 EKSEVKASLSELT-KELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEEL 738
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 738 ELEEQHQQRHKSLKEAHvlafQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEG 817
Cdd:pfam02463 739 KLLKQKIDEEEEEEEKS----RLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEA 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 818 KAMLASLRSELNHQHAasIDLLRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLH 897
Cdd:pfam02463 815 ELLEEEQLLIEQEEKI--KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKE 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 898 ENINTLTKELELKGKEILRVRSESNQQMrLHEQDLNKRLEKELDVMTADHLREKNIMRADFNKTNELLKEINAALQVSLE 977
Cdd:pfam02463 893 EKEKEEKKELEEESQKLNLLEEKENEIE-ERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1039734433 978 DMEEKYLMRESRPEDIQ----MIAELKSLITERDQVIKKLIQKKK 1018
Cdd:pfam02463 972 LGKVNLMAIEEFEEKEErynkDELEKERLEEEKKKLIRAIIEETC 1016
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-451 |
6.92e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 6.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 107 LRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQlcaeaqhvQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENdK 186
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE--------EDLSSLEQEIENVKSELKELEARIEELEEDLHK-L 777
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 187 QAALEDLrttHRLEVQELLKSQQNHSSSVklgqekaEGLHRMEVEALNNTvkELRLEKKQLIEEYEGKLSKAQVFYEREL 266
Cdd:TIGR02169 778 EEALNDL---EARLSHSRIPEIQAELSKL-------EEEVSRIEARLREI--EQKLNRLTLEKEYLEKEIQELQEQRIDL 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 267 DNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQ 346
Cdd:TIGR02169 846 KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAK 925
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 347 LDdakegemALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVT---IKDLESEKSRANE---RLCQL 420
Cdd:TIGR02169 926 LE-------ALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNmlaIQEYEEVLKRLDElkeKRAKL 998
|
330 340 350
....*....|....*....|....*....|.
gi 1039734433 421 EEERAFLQSRTQSLDEEQKQQVLELEKKVNE 451
Cdd:TIGR02169 999 EEERKAILERIEEYEKKKREVFMEAFEAINE 1029
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
245-481 |
1.49e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 52.33 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 245 KQLIEEYEGKLSKAQVFYERELDNLKrsqlftaESLQASRDKEADLRKE-----FQGQEAILRKTIGKLKTELQMVQDEA 319
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELR-------KELEEAEAALEEFRQKnglvdLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 320 SSLLDKCQKLQMALATAENNVQVLQkqlddAKEGEMALLSKHKEVESELAAARERLQEQASDLVlkashigmlqatQMTQ 399
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPELL-----QSPVIQQLRAQLAELEAELAELSARYTPNHPDVI------------ALRA 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 400 EvtIKDLESE-KSRANERLCQLEEERAFLQSRTQSLdeeqKQQVLELEKKVNEAKRTQQEYYEM--ELKNLQNRLEGEVA 476
Cdd:COG3206 299 Q--IAALRAQlQQEAQRILASLEAELEALQAREASL----QAQLAQLEARLAELPELEAELRRLerEVEVARELYESLLQ 372
|
....*
gi 1039734433 477 QLNEA 481
Cdd:COG3206 373 RLEEA 377
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
410-780 |
2.21e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.21e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 410 KSRANERLCQLEEERAFLQsRTQSLDEEQKQQVLELEKKVNEAKRTQQeyYEMELKNLQNRLEgeVAQLNEAHGKtLEEL 489
Cdd:TIGR02168 171 KERRKETERKLERTRENLD-RLEDILNELERQLKSLERQAEKAERYKE--LKAELRELELALL--VLRLEELREE-LEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 490 ARKHHMAIEAVHSnASRDKIKLQTELEEqYKKEKLSLEEDKNQLQLELESLkqalgdkltsaNQEIGRL-QDLVRKSEQg 568
Cdd:TIGR02168 245 QEELKEAEEELEE-LTAELQELEEKLEE-LRLEVSELEEEIEELQKELYAL-----------ANEISRLeQQKQILRER- 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 569 lgsaeglISSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRvdRMAHDLEIKWTENL 648
Cdd:TIGR02168 311 -------LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL--EELESRLEELEEQL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 649 RQECSKLRqelrlQHEEDKKSAMSQLLQLKEREK--NAARDSWQKKVEDLLNQISLL-KQNLELQLCQSQTSLQQLQAQF 725
Cdd:TIGR02168 382 ETLRSKVA-----QLELQIASLNNEIERLEARLErlEDRRERLQQEIEELLKKLEEAeLKELQAELEELEEELEELQEEL 456
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 726 TQERQRLTQELEELEEQHQQRHKSLKEAHVLAF-----QTMEEEKEKEQRALETHLQQKH 780
Cdd:TIGR02168 457 ERLEEALEELREELEEAEQALDAAERELAQLQArldslERLQENLEGFSEGVKALLKNQS 516
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
415-630 |
4.42e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 415 ERLCQL---EEERAF-LQSRTQS------LDEEQKQQVLElEKKVNEAKRTQQEYYEmELKNLQNRLE---------GEV 475
Cdd:COG4913 180 ARLRRRlgiGSEKALrLLHKTQSfkpigdLDDFVREYMLE-EPDTFEAADALVEHFD-DLERAHEALEdareqiellEPI 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 476 AQLNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQTELEE------QYKKEKLSLEEDKNQLQLELESLKQAL----G 545
Cdd:COG4913 258 RELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEElraelaRLEAELERLEARLDALREELDELEAQIrgngG 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 546 DKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATM 625
Cdd:COG4913 338 DRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDL 417
|
....*
gi 1039734433 626 KEEEK 630
Cdd:COG4913 418 RRELR 422
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
230-933 |
4.55e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 4.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 230 VEALNNTVKELrleKKQLIEEYEgkLSKAQVFYERELDNLKRSQLftaESLQASRDKEADLRK-EFQGQEAI---LRKTI 305
Cdd:pfam15921 80 LEEYSHQVKDL---QRRLNESNE--LHEKQKFYLRQSVIDLQTKL---QEMQMERDAMADIRRrESQSQEDLrnqLQNTV 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 306 GKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHkeveSELAAARERLQEQASDLVLK 385
Cdd:pfam15921 152 HELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEH----DSMSTMHFRSLGSAISKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 386 A--SHIGMLQATQMTQEVTIKDLESEKSRANERLCQLEeeraflQSRTQSLDEEQKQQVLELEKKVNEAK---------- 453
Cdd:pfam15921 228 EldTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQH------QDRIEQLISEHEVEITGLTEKASSARsqansiqsql 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 454 -------RTQQEYYEMELKNLQN---RLEGEVAQLNEAHGKTLEELARKHHMA-IEAVHSNASRDKI---------KLQT 513
Cdd:pfam15921 302 eiiqeqaRNQNSMYMRQLSDLEStvsQLRSELREAKRMYEDKIEELEKQLVLAnSELTEARTERDQFsqesgnlddQLQK 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 514 ELEEQYKKEK-LSLEEDKNQL--------QLELESLKQALGDKltsaNQEIGRLQDLVRK-SEQGLGSAEGLISSLQDSQ 583
Cdd:pfam15921 382 LLADLHKREKeLSLEKEQNKRlwdrdtgnSITIDHLRRELDDR----NMEVQRLEALLKAmKSECQGQMERQMAAIQGKN 457
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 584 ERLQSELDLTkGRLKETKDALLNVEAELQQERHEHEQTLATMKE-----EEKLRVdrmahdleikwTENLRQECSKLRQ- 657
Cdd:pfam15921 458 ESLEKVSSLT-AQLESTKEMLRKVVEELTAKKMTLESSERTVSDltaslQEKERA-----------IEATNAEITKLRSr 525
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 658 -ELRLQHEEDKKSAMSQLlqlkeREKNAARDSWQKKVEDLLNQISLLKQNLElqlcqsqtSLQQLQAQFTQERQRLTQEL 736
Cdd:pfam15921 526 vDLKLQELQHLKNEGDHL-----RNVQTECEALKLQMAEKDKVIEILRQQIE--------NMTQLVGQHGRTAGAMQVEK 592
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 737 EELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQ-----KHSAELQSLKDAHREsmegfRVEMEQELQTLRF 811
Cdd:pfam15921 593 AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKvklvnAGSERLRAVKDIKQE-----RDQLLNEVKTSRN 667
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 812 ELEDEGKAMLASLRSELNHqhAASIDLLRHSHHQELAAAKMELERSIDISR-----------------RQSKEHMCRISD 874
Cdd:pfam15921 668 ELNSLSEDYEVLKRNFRNK--SEEMETTTNKLKMQLKSAQSELEQTRNTLKsmegsdghamkvamgmqKQITAKRGQIDA 745
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039734433 875 LQEELRHREHHITDLDKEVQHLHENINTLTKELELKGKEILRVRSE----SNQQMRLHEQDLN 933
Cdd:pfam15921 746 LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGElevlRSQERRLKEKVAN 808
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
512-710 |
8.88e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 8.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 512 QTELEEQYKKEKLSLEEDKNQLQLELESLKQ---ALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQS 588
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKeekALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 589 ELDLTKGRLKETKDA------------LLNVEAELQQERHEH---EQTLATMKEEEKLRVDRMAHDLEIKWTENLRQECS 653
Cdd:COG4942 98 ELEAQKEELAELLRAlyrlgrqpplalLLSPEDFLDAVRRLQylkYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1039734433 654 KLRQEL-----RLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQISLLKQNLELQ 710
Cdd:COG4942 178 ALLAELeeeraALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
262-881 |
1.00e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 262 YERELDNLKRsQLFTAESLQASRDKEADLRKEFQGQEAIL--------RKTIGKLKTELQMVQDEASSLLDKCQKLQMAL 333
Cdd:COG4913 240 AHEALEDARE-QIELLEPIRELAERYAAARERLAELEYLRaalrlwfaQRRLELLEAELEELRAELARLEAELERLEARL 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 334 ATAENNVQVLQKQLDDAKEGEMALLskhkevESELAAARERLQEQASDLvlkASHIGMLQATQMTQEVTIKDLESEKSRA 413
Cdd:COG4913 319 DALREELDELEAQIRGNGGDRLEQL------EREIERLERELEERERRR---ARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 414 NERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRtqqeyyemeLKNLQNRLEGEV----AQLNEAHGKTLEEL 489
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIAS---------LERRKSNIPARLlalrDALAEALGLDEAEL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 490 ------------ARKHHMAIEAV-HS-------------------NASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLEL 537
Cdd:COG4913 461 pfvgelievrpeEERWRGAIERVlGGfaltllvppehyaaalrwvNRLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 538 ESLKQALGDKLtsaNQEIGRLQDLVR-KSEQGLG------SAEGLISSLQ-----DSQERLQSELDLtkGRLKETKDALL 605
Cdd:COG4913 541 DFKPHPFRAWL---EAELGRRFDYVCvDSPEELRrhpraiTRAGQVKGNGtrhekDDRRRIRSRYVL--GFDNRAKLAAL 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 606 NVE-AELQQERHEHEQTLATMKEEEKLRVDRMAH--------DLEIKWTEnLRQECSKLRQELrlqheEDKKSAMSQLLQ 676
Cdd:COG4913 616 EAElAELEEELAEAEERLEALEAELDALQERREAlqrlaeysWDEIDVAS-AEREIAELEAEL-----ERLDASSDDLAA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 677 LKER--EKNAARDSWQKKVEDLLNQISLLKQNLElqlcqsqtslqqlqaQFTQERQRLTQELEELEEQHQQRHKSLKEAH 754
Cdd:COG4913 690 LEEQleELEAELEELEEELDELKGEIGRLEKELE---------------QAEEELDELQDRLEAAEDLARLELRALLEER 754
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 755 VLafQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHRESMEGFRVEMEQELQTLRFELEDEGK--AMLASLRSELNHQH 832
Cdd:COG4913 755 FA--AALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESLPEylALLDRLEEDGLPEY 832
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1039734433 833 AASI-DLLRHSHHQELAAAKMELERSIDISRRqskehmcRISDLQEELRH 881
Cdd:COG4913 833 EERFkELLNENSIEFVADLLSKLRRAIREIKE-------RIDPLNDSLKR 875
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
237-938 |
1.83e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 237 VKELRLEKKQLIEEYEGKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKT--ELQM 314
Cdd:TIGR00618 178 YTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAqeEQLK 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 315 VQDEASSLLDKCQKLQMALATAENnvqvLQKQLDDAKEGE-MALLSKH-KEVESELAAARERLQEQASDLVLKASHIGML 392
Cdd:TIGR00618 258 KQQLLKQLRARIEELRAQEAVLEE----TQERINRARKAApLAAHIKAvTQIEQQAQRIHTELQSKMRSRAKLLMKRAAH 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 393 QATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQ-----KQQVLELEKKVNEAKRTQQEYYEMELKNL 467
Cdd:TIGR00618 334 VKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQhihtlQQQKTTLTQKLQSLCKELDILQREQATID 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 468 QNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQTELEE--QYKKEKLSLEEDKNQLQLELESLKQALG 545
Cdd:TIGR00618 414 TRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQEsaQSLKEREQQLQTKEQIHLQETRKKAVVL 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 546 DKLtsanQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATM 625
Cdd:TIGR00618 494 ARL----LELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 626 KEEEKLRVDRMAHDLEIkwtENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAArdswqkkvedlLNQISLLKQ 705
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDI---PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQD-----------LQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 706 NLELQLCQSQTSLQQLQAQFTQERQRLtqeleeleeqhqqrhkslkeaHVLAFQTMEEEKEKEQRALETHLQQKhsaelq 785
Cdd:TIGR00618 636 QCSQELALKLTALHALQLTLTQERVRE---------------------HALSIRVLPKELLASRQLALQKMQSE------ 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 786 slkdahRESMEGFRVEMEQELQTLRFELEDEGKamlaslrselNHQHAASIDLLRHSHHQELAAAKMELERSIDISRRQS 865
Cdd:TIGR00618 689 ------KEQLTYWKEMLAQCQTLLRELETHIEE----------YDREFNEIENASSSLGSDLAAREDALNQSLKELMHQA 752
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1039734433 866 KEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKGKEILRVRSESNQQMRLHEQDLNKRLEK 938
Cdd:TIGR00618 753 RTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCET 825
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
359-585 |
1.90e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 359 SKHKEVESELAAARERLQEQASDLvlkashiGMLQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQ 438
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKEL-------AALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 439 KQQVLELEKKVNEAKRTQQEYYEMELKN-LQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVhsNASRDKIKLQTELEE 517
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRLGRQPpLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL--RADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1039734433 518 QYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQER 585
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
49-474 |
2.29e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 49 KKIAQLTKVIYALNTRNDEHDAAIQALKDAHE-----EEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMK 123
Cdd:PTZ00121 1371 KKKEEAKKKADAAKKKAEEKKKADEAKKKAEEdkkkaDELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAK 1450
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 124 MKQEALTEFEAYKRRVEDMQlcaEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQvQFENDKQAALEDLRTTHRLEVQE 203
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAK---KADEAKKKAEEAKKADEAKKKAEEAKKKADEAK-KAAEAKKKADEAKKAEEAKKADE 1526
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 204 LLKSQQ-NHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEG-KLSKAQVFYERELdnlKRSQLFTAESLQ 281
Cdd:PTZ00121 1527 AKKAEEaKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNmALRKAEEAKKAEE---ARIEEVMKLYEE 1603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 282 ASRDKEADLRKEfqGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQmALATAENNVQVLQKQLDDAKEGEMALLSKH 361
Cdd:PTZ00121 1604 EKKMKAEEAKKA--EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAE-ELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 362 KEVESELAAARERLQEQASdlvlkashigmlQATQMTQevtIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQ 441
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAE------------EAKKAEE---LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK 1745
|
410 420 430
....*....|....*....|....*....|...
gi 1039734433 442 VLELEKKVNEAKRTQQEYYEMELKNLQNRLEGE 474
Cdd:PTZ00121 1746 AEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
274-485 |
5.34e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 5.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 274 LFTAESLQASRDKEADLRKEFQGqeaiLRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEG 353
Cdd:COG4942 9 LLLALAAAAQADAAAEAEAELEQ----LQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 354 EMALLSKHKEVESELAAARERLQEQ---------------------ASDLVLKASHIGMLQATQMTQ----EVTIKDLES 408
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELlralyrlgrqpplalllspedFLDAVRRLQYLKYLAPARREQaeelRADLAELAA 164
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039734433 409 EKSRANERLCQLEEERAFLQSRTQSLDEE--QKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKT 485
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALEALkaERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
341-656 |
7.10e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.14 E-value: 7.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 341 QVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKAS-------HIGMLQATQMTQEVTI-KDLESEKSR 412
Cdd:pfam12128 600 EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTalknarlDLRRLFDEKQSEKDKKnKALAERKDS 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 413 ANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTqqeyYEMELKNLQNRLEGEVAQLNEAHGKTLEELARK 492
Cdd:pfam12128 680 ANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQV----VEGALDAQLALLKAAIAARRSGAKAELKALETW 755
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 493 HHMAIEAVHSNASRDkIKLQTELE------EQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSE 566
Cdd:pfam12128 756 YKRDLASLGVDPDVI-AKLKREIRtlerkiERIAVRRQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLI 834
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 567 QGLGSAEGLISSLQDSQERLQSELD--LTKGRLKETKDALLNVEAELQQERHEHEQTLATMkEEEKLRVDRMAHDLEiKW 644
Cdd:pfam12128 835 ADTKLRRAKLEMERKASEKQQVRLSenLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQL-EDLKLKRDYLSESVK-KY 912
|
330
....*....|..
gi 1039734433 645 TENLRQECSKLR 656
Cdd:pfam12128 913 VEHFKNVIADHS 924
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
52-446 |
8.17e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.04 E-value: 8.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 52 AQLTKVIYALNTRND--EHDAAIQALKDAHEEEIQQILAETREKILLYKSKvteeldlRRKIQVLEASLEDHMKMKQEAL 129
Cdd:pfam15921 444 GQMERQMAAIQGKNEslEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESS-------ERTVSDLTASLQEKERAIEATN 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 130 TEFEAYKRRV-----EDMQLCAEAQHVQRIVTmsrEVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQEL 204
Cdd:pfam15921 517 AEITKLRSRVdlklqELQHLKNEGDHLRNVQT---ECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKA 593
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 205 LKSQQNHSSSVKLGQEKA-EGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLsKAQVFYERELDNLKRSQLFTAESLQAS 283
Cdd:pfam15921 594 QLEKEINDRRLELQEFKIlKDKKDAKIRELEARVSDLELEKVKLVNAGSERL-RAVKDIKQERDQLLNEVKTSRNELNSL 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 284 RDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLdDAKEGEM-ALLSKHK 362
Cdd:pfam15921 673 SEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQI-TAKRGQIdALQSKIQ 751
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 363 EVESELAAARER---LQEQASDLVLKASHIGMlQATQMTQEVTIkdLESEKSRANERLCQLEE--ERAFLQ-SRTQSLDE 436
Cdd:pfam15921 752 FLEEAMTNANKEkhfLKEEKNKLSQELSTVAT-EKNKMAGELEV--LRSQERRLKEKVANMEValDKASLQfAECQDIIQ 828
|
410
....*....|
gi 1039734433 437 EQKQQVLELE 446
Cdd:pfam15921 829 RQEQESVRLK 838
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
98-909 |
1.28e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.21 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 98 KSKVTEELD-LRRKIQVLEASLE------DHMKMKQEALTEFEAYKRRVEDMQLCAeaqHVQRIVTMSREVEEIRKKFEE 170
Cdd:TIGR02169 172 KEKALEELEeVEENIERLDLIIDekrqqlERLRREREKAERYQALLKEKREYEGYE---LLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 171 RLRSFGQLQVQFE--NDKQAALEDLRTTHRLEVQELLKSQQNHSSSvKLGQEKAE-GLHRMEVEALNNTVKELRLEKKQL 247
Cdd:TIGR02169 249 LEEELEKLTEEISelEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE-KIGELEAEiASLERSIAEKERELEDAEERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 248 IEEYEGKLSKAQVFyERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQE---AILRKTIGKLKTELQMVQDEASSLLD 324
Cdd:TIGR02169 328 EAEIDKLLAEIEEL-EREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDkefAETRDELKDYREKLEKLKREINELKR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 325 KCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLvlkashigmlqatqmtqevtiK 404
Cdd:TIGR02169 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL---------------------S 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 405 DLESEKSRANERLCQLEEERaflqsrtqsldEEQKQQVLELEKKVNEAKRTQQEYY--EMELKNLQNRLEGEVAQLNEah 482
Cdd:TIGR02169 466 KYEQELYDLKEEYDRVEKEL-----------SKLQRELAEAEAQARASEERVRGGRavEEVLKASIQGVHGTVAQLGS-- 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 483 gktleeLARKHHMAIEAVHSNASrDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDK-LTSANQEIGRLQDL 561
Cdd:TIGR02169 533 ------VGERYATAIEVAAGNRL-NNVVVEDDAVAKEAIELLKRRKAGRATFLPLNKMRDERRDLsILSEDGVIGFAVDL 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 562 VRKSEQglgSAEGLISSLQDS--QERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRMAHD 639
Cdd:TIGR02169 606 VEFDPK---YEPAFKYVFGDTlvVEDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRER 682
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 640 LEikwteNLRQECSKLRQELRLQheedkKSAMSQLLQLKEREknaardswQKKVEDLLNQISLLKQNLElqlcqsqtsLQ 719
Cdd:TIGR02169 683 LE-----GLKRELSSLQSELRRI-----ENRLDELSQELSDA--------SRKIGEIEKEIEQLEQEEE---------KL 735
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 720 QLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSLKDAHREsMEGFR 799
Cdd:TIGR02169 736 KERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR-IEARL 814
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 800 VEMEQELQ--TLRFELEDEGKAMLASLRSELNHQHAAsidllRHSHHQELAAAKMELERSIDISRRQSKEHMCRISDLQE 877
Cdd:TIGR02169 815 REIEQKLNrlTLEKEYLEKEIQELQEQRIDLKEQIKS-----IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKK 889
|
810 820 830
....*....|....*....|....*....|..
gi 1039734433 878 ELRHREHHITDLDKEVQHLHENINTLTKELEL 909
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSE 921
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
305-708 |
3.60e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.81 E-value: 3.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 305 IGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDdAKEGEMALLskhkevESELAAARERLQEQASDLVL 384
Cdd:pfam10174 291 IDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLT-AKEQRAAIL------QTEVDALRLRLEEKESFLNK 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 385 KASHIGMLQATQMTQEVTIKDLEseksranERLCQLEEERAFLQSRTQSLDEeqkqQVLELEKKVNEAKRTQQEyyemel 464
Cdd:pfam10174 364 KTKQLQDLTEEKSTLAGEIRDLK-------DMLDVKERKINVLQKKIENLQE----QLRDKDKQLAGLKERVKS------ 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 465 knlqnrLEGEVAQLNEAHGkTLEELARKHHMAIEAVHSNASRDKIKLQTELEeQYKKEKLSLEEDKNQLQLELESLKQAL 544
Cdd:pfam10174 427 ------LQTDSSNTDTALT-TLEEALSEKERIIERLKEQREREDRERLEELE-SLKKENKDLKEKVSALQPELTEKESSL 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 545 GDKLTSANQeigrLQDLVRKSEQGLGSAEGLISSLQDSQERLQSEL------DLTKGRLKETKDALLNVEAELQQERHEH 618
Cdd:pfam10174 499 IDLKEHASS----LASSGLKKDSKLKSLEIAVEQKKEECSKLENQLkkahnaEEAVRTNPEINDRIRLLEQEVARYKEES 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 619 -------EQTLATMK--EEEKLRVDRMAHDLEIKWTENLRQECSKLRQELRLQHEEDKKSAMsQLLQLKEREKNAARDSW 689
Cdd:pfam10174 575 gkaqaevERLLGILRevENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQ-LLEEARRREDNLADNSQ 653
|
410
....*....|....*....
gi 1039734433 690 QKKVEDLLNQISLLKQNLE 708
Cdd:pfam10174 654 QLQLEELMGALEKTRQELD 672
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
324-567 |
4.26e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 324 DKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEqasdlvlkashigmLQATQMTQEVTI 403
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA--------------LEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 404 KDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQeYYEMELKNLQNRLegevaqlnEAHG 483
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQ-YLKYLAPARREQA--------EELR 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 484 KTLEELARKhhmaiEAVHSNASRDKIKLQTELEEQyKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVR 563
Cdd:COG4942 157 ADLAELAAL-----RAELEAERAELEALLAELEEE-RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
....
gi 1039734433 564 KSEQ 567
Cdd:COG4942 231 RLEA 234
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
354-566 |
5.77e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.96 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 354 EMALLSKHKEVESELAAARE-RLQEQASDLVLKASHIGMLQ---ATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQS 429
Cdd:pfam17380 384 QMERQQKNERVRQELEAARKvKILEEERQRKIQQQKVEMEQiraEQEEARQREVRRLEEERAREMERVRLEEQERQQQVE 463
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 430 RTQSLDEEQKQQVLELEKKvneaKRTQQEYYEMELKNLQNRLEgevaqlneahgktleelARKHHMAIEavhsnaSRDKI 509
Cdd:pfam17380 464 RLRQQEEERKRKKLELEKE----KRDRKRAEEQRRKILEKELE-----------------ERKQAMIEE------ERKRK 516
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1039734433 510 KLQTELEEQ----YKKEKLSLEEDKNQLQLELESLKQaLGDKLTSANQEIGRLQDLVRKSE 566
Cdd:pfam17380 517 LLEKEMEERqkaiYEEERRREAEEERRKQQEMEERRR-IQEQMRKATEERSRLEAMERERE 576
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
48-706 |
6.95e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.81 E-value: 6.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 48 SKKIAQLTKVIYALNTRNDEHDAAIQALKDAHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQE 127
Cdd:pfam02463 263 EEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEK 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 128 ALTEFEAYKRRVEDMQLCAEAQHVQRIVTMSREVEEIRKKFEERLRSFGQLQVQFENDKQAALEDLRTTHRLEVQE-LLK 206
Cdd:pfam02463 343 ELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEdLLK 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 207 SQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYE------GKLSKAQVFYERELDNLKRSQLFTAESL 280
Cdd:pfam02463 423 EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKksedllKETQLVKLQEQLELLLSRQKLEERSQKE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 281 QASRDKEADLRKEFQGQEAILRKTIGKLKTELQ-MVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAKEGEMALLS 359
Cdd:pfam02463 503 SKARSGLKVLLALIKDGVGGRIISAHGRLGDLGvAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRL 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 360 KHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLES-EKSRANERLCQLEEERAFLQSRTQSLDEEQ 438
Cdd:pfam02463 583 LIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDtELTKLKESAKAKESGLRKGVSLEEGLAEKS 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 439 KQQV-LELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSNASRDKIKLQTELEE 517
Cdd:pfam02463 663 EVKAsLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLK 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 518 QYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQglgsaEGLISSLQDSQERLQSELDLTKGRL 597
Cdd:pfam02463 743 QKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEK-----EEKLKAQEEELRALEEELKEEAELL 817
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 598 KETKDALLNVEAELQQERHEHEQTLATMKEEEKLRVDRmahdLEIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQL 677
Cdd:pfam02463 818 EEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEE----LERLEEEITKEELLQELLLKEEELEEQKLKDELESKEE 893
|
650 660
....*....|....*....|....*....
gi 1039734433 678 KEREKNAARDSWQKKVEDLLNQISLLKQN 706
Cdd:pfam02463 894 KEKEEKKELEEESQKLNLLEEKENEIEER 922
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
327-705 |
9.94e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 9.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 327 QKLQMALATAENNVQVLQKQLDDAKEGEMALlskhkevESELAAARERLQ------EQASDLVLKASHIGMLQATQMTQE 400
Cdd:COG3096 295 FGARRQLAEEQYRLVEMARELEELSARESDL-------EQDYQAASDHLNlvqtalRQQEKIERYQEDLEELTERLEEQE 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 401 VTIKDLESEKSRANERLCQLEEE----RAFLQSRTQSLDEEQK-----QQVLE-LEKKvneakRTQQEYYEMELKNLQNR 470
Cdd:COG3096 368 EVVEEAAEQLAEAEARLEAAEEEvdslKSQLADYQQALDVQQTraiqyQQAVQaLEKA-----RALCGLPDLTPENAEDY 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 471 LEGEVAQLNEAhgkTLEELARKHHMAIEAVHSNASRDKIKL------QTELEEQYKKEKLSLEEDKNQlqleleslkQAL 544
Cdd:COG3096 443 LAAFRAKEQQA---TEEVLELEQKLSVADAARRQFEKAYELvckiagEVERSQAWQTARELLRRYRSQ---------QAL 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 545 GDKLTSANQEIGRLQDLVRKseqglgsaeglisslQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLAT 624
Cdd:COG3096 511 AQRLQQLRAQLAELEQRLRQ---------------QQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEEQAAE 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 625 MKEeeklrvDRMAHDLEIKWTENLRQECSK--------------LRQEL--RLQHEEDKKSAMSQLLQlKEREKNAARDS 688
Cdd:COG3096 576 AVE------QRSELRQQLEQLRARIKELAArapawlaaqdalerLREQSgeALADSQEVTAAMQQLLE-REREATVERDE 648
|
410
....*....|....*..
gi 1039734433 689 WQKKVEDLLNQISLLKQ 705
Cdd:COG3096 649 LAARKQALESQIERLSQ 665
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
274-449 |
1.10e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.36 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 274 LFTAESLQASRDKEADLRKEFQGQEAILRKT---IGKLKTELQMVQDEASSLLDKCQkLQMALATAENNVQVLQKQLDDA 350
Cdd:PRK11281 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAqaeLEALKDDNDEETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 351 KEGEMALLSKHKEVESELAAARERLQE--------QASDLVLKASHIGMLQATQ-------------MTQEVTIKDL-ES 408
Cdd:PRK11281 148 NSQLVSLQTQPERAQAALYANSQRLQQirnllkggKVGGKALRPSQRVLLQAEQallnaqndlqrksLEGNTQLQDLlQK 227
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1039734433 409 EKSRANERLCQLEEERAFLQS------RTQSldEEQKQQVLELEKKV 449
Cdd:PRK11281 228 QRDYLTARIQRLEHQLQLLQEainskrLTLS--EKTVQEAQSQDEAA 272
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
69-608 |
1.20e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.13 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 69 DAAIQALKD--AHEEEIQQILAETREKILLYKSKVTEELDLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQLCA 146
Cdd:PRK03918 175 KRRIERLEKfiKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 147 EAQHvQRIVTMSREVEEIRKKFEERLRSFGQL-QVQFENDKQAALEDLRTTHRLEVQELLKSQQNHSSSVKLGQEKAEgl 225
Cdd:PRK03918 255 RKLE-EKIRELEERIEELKKEIEELEEKVKELkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-- 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 226 hrmEVEALNNTVKELRLEKKQLIEEYEgKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTI 305
Cdd:PRK03918 332 ---ELEEKEERLEELKKKLKELEKRLE-ELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 306 GKLKTELQMVQDEASSLldkcQKLQMALATAENNVQVLQKQLDDAKEGEM---------ALLSKHKEVESELAAARERLQ 376
Cdd:PRK03918 408 SKITARIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHRKELleeytaelkRIEKELKEIEEKERKLRKELR 483
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 377 EQASDLVLKASHIGMLQATQMTQEVTIK----DLEsEKSRANERLCQLEEERAFLQSRTQSLDEEQKqQVLELEKKVNEA 452
Cdd:PRK03918 484 ELEKVLKKESELIKLKELAEQLKELEEKlkkyNLE-ELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAEL 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 453 KRTQQEyYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIEAVHSnasrdKIKLQTELEEQyKKEKLSLEEDKNQ 532
Cdd:PRK03918 562 EKKLDE-LEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDA-----EKELEREEKEL-KKLEEELDKAFEE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 533 LQL---ELESLKQALGDKLTSANQE-IGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVE 608
Cdd:PRK03918 635 LAEtekRLEELRKELEELEKKYSEEeYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
403-739 |
1.84e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 403 IKDLESEKSRANERLCQLEEERAflqsRTQSLDEEQKQQVLELEKKVNEAKRTQ---QEYYEMELKNLQNRLEGEVAQLn 479
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIE----RLDLIIDEKRQQLERLRREREKAERYQallKEKREYEGYELLKEKEALERQK- 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 480 EAHGKTLEELaRKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLK---QALGDKLTSANQEIG 556
Cdd:TIGR02169 240 EAIERQLASL-EEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEaeiASLERSIAEKERELE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 557 RLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVEAELQQERHEHEQTLATMKEEEKlRVDRM 636
Cdd:TIGR02169 319 DAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE-KLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 637 AHDL-EIKWTENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKEREKNAardswQKKVEDLLNQISLLKQNLElQLCQSQ 715
Cdd:TIGR02169 398 KREInELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK-----ALEIKKQEWKLEQLAADLS-KYEQEL 471
|
330 340
....*....|....*....|....
gi 1039734433 716 TSLQQLQAQFTQERQRLTQELEEL 739
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEA 495
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
409-1020 |
1.95e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 409 EKSRANERLCQLEEERAFLQSR-TQSLDEEQKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLE 487
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEEVRkAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 488 ELARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVRKSEQ 567
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 568 GLGSAEGLISSLQDSQERLQSELDLTKGRLKETKDALLNVEA-ELQQERHEHEQTLATMKEEEKLRVDRM---------- 636
Cdd:PTZ00121 1327 AKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAaEKKKEEAKKKADAAKKKAEEKKKADEAkkkaeedkkk 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 637 AHDLEIKWTENLRQECSKLRQELRLQHEEDKKSA----MSQLLQLKEREKNAARDSWQK-----KVEDLLNQISLLKQNL 707
Cdd:PTZ00121 1407 ADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAeeakKADEAKKKAEEAKKAEEAKKKaeeakKADEAKKKAEEAKKAD 1486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 708 ELQLCQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAELQSL 787
Cdd:PTZ00121 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKA 1566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 788 KDAHRE----SMEGFRVEMEQELQTLRFE----LEDEGKAMLASLRSELNHQHAASIDLLR----HSHHQELAAAKMELE 855
Cdd:PTZ00121 1567 EEAKKAeedkNMALRKAEEAKKAEEARIEevmkLYEEEKKMKAEEAKKAEEAKIKAEELKKaeeeKKKVEQLKKKEAEEK 1646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 856 RSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKgKEILRVRSESNQQMRLHEQdlnKR 935
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEA-KKAEELKKKEAEEKKKAEE---LK 1722
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 936 LEKELDVMTADHLREKNimRADFNKTNELLKEINAALQVSLEDMEEKYLMRESRPEDIQMIAElksLITERDQVIKKLIQ 1015
Cdd:PTZ00121 1723 KAEEENKIKAEEAKKEA--EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE---ELDEEDEKRRMEVD 1797
|
....*
gi 1039734433 1016 KKKND 1020
Cdd:PTZ00121 1798 KKIKD 1802
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
232-471 |
3.39e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.29 E-value: 3.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 232 ALNNTVKELRLEKKQL---IEEYEGKLSKAQVFYERELDNLKRSQLFTAESLQASRDKEADLrKEFQGQEAILRKTIGKL 308
Cdd:COG4942 17 AQADAAAEAEAELEQLqqeIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL-AALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 309 KTELQMVQDEASSLLDKCQKLQ-----MALATAENNVQVLQKQ--LDDAKEGEMALLSKHKEVESELAAARERLQEQASD 381
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGrqpplALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 382 LvlkashigmlQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYE 461
Cdd:COG4942 176 L----------EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
250
....*....|
gi 1039734433 462 MELKNLQNRL 471
Cdd:COG4942 246 AGFAALKGKL 255
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
611-1023 |
4.55e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 611 LQQERHEHEQTLATMKEEEKlRVDRMAHDLEIKWtENLRQECSKLRQELRLQHEEDKKSAMSQLLQLKE-REKNAARDSW 689
Cdd:TIGR02168 170 YKERRKETERKLERTRENLD-RLEDILNELERQL-KSLERQAEKAERYKELKAELRELELALLVLRLEElREELEELQEE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 690 QKKVEDLLNQISLLKQNLELQLCQSQTSLQQLQAQFTQERQRLTQELEEleeqhqqrhKSLKEAHVLAFQTMEEEKEKEQ 769
Cdd:TIGR02168 248 LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANE---------ISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 770 RALETHLQQKHSAELQSLKDAHresmegfrvEMEQELQTLRFELEDEgKAMLASLRSELnhqhaasidllrhshhQELAA 849
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELA---------ELEEKLEELKEELESL-EAELEELEAEL----------------EELES 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 850 AKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKGKEILRVRSESNQQMRLHE 929
Cdd:TIGR02168 373 RLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 930 QDLNKRLEKELDVMTADHLREKNIMRADFNKTNELlkeinAALQVSLEDMEEKYlmrESRPEDIQMIAELKSLITERDQV 1009
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQL-----QARLDSLERLQENL---EGFSEGVKALLKNQSGLSGILGV 524
|
410
....*....|....
gi 1039734433 1010 IKKLIQKKKNDKSA 1023
Cdd:TIGR02168 525 LSELISVDEGYEAA 538
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
281-705 |
5.02e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 281 QASRDKEADLRKEFQGQEAI-----LRKTIGKLKTE-LQMV-------QDEASSLLDKCQKLQMALATAENNVQVLQKQL 347
Cdd:PRK04863 230 KAFQDMEAALRENRMTLEAIrvtqsDRDLFKHLITEsTNYVaadymrhANERRVHLEEALELRRELYTSRRQLAAEQYRL 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 348 DDAKEGEMALLSKHKEVESELAAARERLQ------------EQASDLVLKAShIGMLQATQMTQEVT--IKDLESEKSRA 413
Cdd:PRK04863 310 VEMARELAELNEAESDLEQDYQAASDHLNlvqtalrqqekiERYQADLEELE-ERLEEQNEVVEEADeqQEENEARAEAA 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 414 NERLCQLEEERAFLQsrtQSLDEEQK-----QQVLELEKKVneakRTQQEYYEMELKNLQNRLEGEVAQLNEAhGKTLEE 488
Cdd:PRK04863 389 EEEVDELKSQLADYQ---QALDVQQTraiqyQQAVQALERA----KQLCGLPDLTADNAEDWLEEFQAKEQEA-TEELLS 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 489 LARKHHMAIEAV--HSNASRDKIKLQTELE-EQYKKEKLSLEEDKNQLQLELESLKQALGdkltsanqeigRLQDLVRKS 565
Cdd:PRK04863 461 LEQKLSVAQAAHsqFEQAYQLVRKIAGEVSrSEAWDVARELLRRLREQRHLAEQLQQLRM-----------RLSELEQRL 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 566 EQglgsaeglisslQDSQERLQSELdltKGRLKETkdalLNVEAELQQERHEHEQTLATMKEE-EKLRVDRMAHDLEIKW 644
Cdd:PRK04863 530 RQ------------QQRAERLLAEF---CKRLGKN----LDDEDELEQLQEELEARLESLSESvSEARERRMALRQQLEQ 590
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039734433 645 TENLRQECSKLRQE----------LRLQHEEDKKSAMS-----QLLQLKEREKNAARDSWQKKVEDLLNQISLLKQ 705
Cdd:PRK04863 591 LQARIQRLAARAPAwlaaqdalarLREQSGEEFEDSQDvteymQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
626-946 |
6.73e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 6.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 626 KEEEKLRVDRMAHDLEikwteNLRQECSKLRQEL-RLQHEEDKKSAMSQLLQLKEREKNAARDSWQKKVEDLLNQISLLK 704
Cdd:COG1196 220 EELKELEAELLLLKLR-----ELEAELEELEAELeELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 705 QNLElqlcQSQTSLQQLQAQFTQERQRLTQELEELEEQHQQRHKSLKEAHVLAFQTMEEEKEKEQRALETHLQQKHSAEL 784
Cdd:COG1196 295 AELA----RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 785 QSLKDAHRESMEGFRVEMEQELQTLRFELEDEGKAMLASLRSELNHQHAASIDLLRHSHHQELAAAKMELERSIDISRRQ 864
Cdd:COG1196 371 EAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 865 SKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKGKEILRVRSESNQQMRLHEQDLNKRLEKELDVMT 944
Cdd:COG1196 451 EAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
..
gi 1039734433 945 AD 946
Cdd:COG1196 531 GV 532
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
106-338 |
7.32e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 106 DLRRKIQVLEASLEDHMKMKQEALTEFEAYKRRVEDMQlcaeaqhvQRIVTMSREVEEIRKKFEERLRSFGQLQVQFEND 185
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA--------RRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 186 KQAALEDLRTTHRLEVQ---ELLKSQQNHSSSVKLGQekaegLHRMEVEALNNTVKELRLEKKQLIEEyegklskaqvfy 262
Cdd:COG4942 103 KEELAELLRALYRLGRQpplALLLSPEDFLDAVRRLQ-----YLKYLAPARREQAEELRADLAELAAL------------ 165
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1039734433 263 ERELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAEN 338
Cdd:COG4942 166 RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
286-598 |
8.36e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 8.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 286 KEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLL---------DKCQKLQMALATA--ENNVQVLQKQLDDAKEge 354
Cdd:COG3206 101 DKLNLDEDPLGEEASREAAIERLRKNLTVEPVKGSNVIeisytspdpELAAAVANALAEAylEQNLELRREEARKALE-- 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 355 mallskhkEVESELAAARERLQEQASDLV-LKASHIGMLQATQMTQevtikdLESEKSRANERLCQLEEERAFLQSRTQS 433
Cdd:COG3206 179 --------FLEEQLPELRKELEEAEAALEeFRQKNGLVDLSEEAKL------LLQQLSELESQLAEARAELAEAEARLAA 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 434 LDEEqkqqvleLEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLneahgktLEELARKHHMAIEAvhsnasRDKIK-LQ 512
Cdd:COG3206 245 LRAQ-------LGSGPDALPELLQSPVIQQLRAQLAELEAELAEL-------SARYTPNHPDVIAL------RAQIAaLR 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 513 TELEEQYKKEKLSLEEDKNQLQLELESLKQALgDKLTSANQEIGRLQDLVRKSEQGLGSAEGLISSLQDSQERLQSELDL 592
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQL-AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
....*.
gi 1039734433 593 TKGRLK 598
Cdd:COG3206 384 TVGNVR 389
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
229-463 |
8.43e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 8.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 229 EVEALNNTVKELRLEKKQLieeyEGKLSKAQvfyeRELDNLKRSQLFTAESLQASRDKEADLRKEFQGQEAILRKTIGKL 308
Cdd:COG3883 17 QIQAKQKELSELQAELEAA----QAELDALQ----AELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 309 KTELQMVQ--DEASSLLDkcqklqmALATAENNVQVLQKQ--LDDAKEGEMALLSKHKEVESELAAARERLQEQASDLvl 384
Cdd:COG3883 89 GERARALYrsGGSVSYLD-------VLLGSESFSDFLDRLsaLSKIADADADLLEELKADKAELEAKKAELEAKLAEL-- 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1039734433 385 kashigmlQATQMTQEVTIKDLESEKSRANERLCQLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYYEME 463
Cdd:COG3883 160 --------EALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
419-590 |
8.94e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 8.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 419 QLEEERAFLQSRTQSLDEEQKQQVLELEKKVNEAKRTQQEYY---------EMELKNLQNRLE------GEVAQLNEAHG 483
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAelqeeleelEEELEELEAELEelreelEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 484 KTLEELARKHHMAIEAVHSNASRDKIKLQTELEEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQEIGRLQDLVR 563
Cdd:COG4717 130 LYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180
....*....|....*....|....*..
gi 1039734433 564 KSEQGLGSAEGLISSLQDSQERLQSEL 590
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENEL 236
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
752-1026 |
9.13e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.31 E-value: 9.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 752 EAHVLAFQTMEEEKEKEQRALETHLQQKHSAElqslkdAHRESMEGFRVEMEQELQTLRFELEDEGKAMLASLRSELNHQ 831
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELE------AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 832 HAASIDLLRhshHQELAAAKMELERSIDISRRQSKEHMCRISDLQEELRHREHHITDLDKEVQHLHENINTLTKELELKG 911
Cdd:COG1196 302 QDIARLEER---RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 912 KEILRVRSESNQQMRLHEQDLNKRLEKELDVMTADHLREKNImRADFNKTNELLKEINAALQVSLEDMEEKYLMRESRPE 991
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE-EELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270
....*....|....*....|....*....|....*
gi 1039734433 992 DIQMIAELKSLITERDQVIKKLIQKKKNDKSAANR 1026
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
198-591 |
9.33e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.14 E-value: 9.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 198 RLEVQELLKSQQNHSSSVKLGQEKAEGLHRMEVEALNNTVKELRLEKKQLIEEYEGKLSKAQ---VFYERELDNLKRSQL 274
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEaelAELPERLEELEERLE 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 275 FTAESLQASRDKEADLRKEFQGQEAILRKTIGKLKTELQMVQDEASSLLDKCQKLQMALATAENNVQVLQKQLDDAkEGE 354
Cdd:COG4717 157 ELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL-ENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 355 MALLSKHKEVESE-----LAAARERLQEQASDLVLKASHIG----------MLQATQMTQEVTIKDLESEKSRANERLCQ 419
Cdd:COG4717 236 LEAAALEERLKEArllllIAAALLALLGLGGSLLSLILTIAgvlflvlgllALLFLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 420 LEEERAFLQSRTQSLDEE-QKQQVLELEKKVNEAKRTQQEYYEMELKNLQNRLEGEVAQLNEAHGKTLEELARKHHMAIE 498
Cdd:COG4717 316 LEEEELEELLAALGLPPDlSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAE 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 499 AVHSNASRdKIKLQTELEEQYKKEKLSLE-EDKNQLQLELESLKQAL---GDKLTSANQEIGRLQDLVRKSEQglgsaEG 574
Cdd:COG4717 396 EYQELKEE-LEELEEQLEELLGELEELLEaLDEEELEEELEELEEELeelEEELEELREELAELEAELEQLEE-----DG 469
|
410
....*....|....*..
gi 1039734433 575 LISSLQDSQERLQSELD 591
Cdd:COG4717 470 ELAELLQELEELKAELR 486
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
181-553 |
9.57e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 181 QFENDKQAALEDLRTTH-RLEVQELLKSqqnhsssvklgqEKAEGLHRMEVEALN-NTVKELRLEKkqliEEYEGK-LSK 257
Cdd:TIGR02169 167 EFDRKKEKALEELEEVEeNIERLDLIID------------EKRQQLERLRREREKaERYQALLKEK----REYEGYeLLK 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 258 AQVFYERELDNLkRSQLFTAESLQASRDKEA-DLRKEFQGQEAILRKTIGKLKtelQMVQDEASSLLDKCQKLQMALATA 336
Cdd:TIGR02169 231 EKEALERQKEAI-ERQLASLEEELEKLTEEIsELEKRLEEIEQLLEELNKKIK---DLGEEEQLRVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 337 ENNVQVLQKQLDDAKEGEMALLSKHKEVESELAAARERLQEQASDLVLKASHIGMLQATQMTQEVTIKDLES-------E 409
Cdd:TIGR02169 307 ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKefaetrdE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039734433 410 KSRANERLCQLEEERAFLQSRTQSLDEEQKQQvlelekkvneakrtqqeyyEMELKNLQNRLEGEVAQLNEahgktLEEL 489
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRL-------------------SEELADLNAAIAGIEAKINE-----LEEE 442
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1039734433 490 ARKHHMAIEAVHSNASRDKIKLqteleEQYKKEKLSLEEDKNQLQLELESLKQALGDKLTSANQ 553
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADL-----SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARA 501
|
|
| |
