NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1039779989|ref|XP_017167808|]
View 

lamin tail domain-containing protein 2 isoform X1 [Mus musculus]

Protein Classification

lamin tail domain-containing protein( domain architecture ID 10469225)

lamin tail domain (LTD)-containing protein similar to Homo sapiens lamin tail domain-containing protein 1 (LMNTD1)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 395-487 1.48e-07

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


:

Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 50.11  E-value: 1.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779989 395 KFIRVINQSQAEtIDLGGFVLQQLVRDfpvcMYRFPPGTLLAPQHHITVWGEGTSRTKkqlpVASGQDPFQFQ-SSRGCV 473
Cdd:pfam00932  22 EFIELYNTGSKA-VDLSGWKLQDASGG----TYTFPNGTTLAPGQTVVVWTGSGTNSA----TAGYWGPSNAVwNNGGDA 92

                          90
                  ....*....|....
gi 1039779989 474 TVLVNPQGQVLSEH 487
Cdd:pfam00932  93 VALYDANGELVDSV 106
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 395-487 1.48e-07

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 50.11  E-value: 1.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779989 395 KFIRVINQSQAEtIDLGGFVLQQLVRDfpvcMYRFPPGTLLAPQHHITVWGEGTSRTKkqlpVASGQDPFQFQ-SSRGCV 473
Cdd:pfam00932  22 EFIELYNTGSKA-VDLSGWKLQDASGG----TYTFPNGTTLAPGQTVVVWTGSGTNSA----TAGYWGPSNAVwNNGGDA 92

                          90
                  ....*....|....
gi 1039779989 474 TVLVNPQGQVLSEH 487
Cdd:pfam00932  93 VALYDANGELVDSV 106
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 395-487 1.48e-07

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 50.11  E-value: 1.48e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1039779989 395 KFIRVINQSQAEtIDLGGFVLQQLVRDfpvcMYRFPPGTLLAPQHHITVWGEGTSRTKkqlpVASGQDPFQFQ-SSRGCV 473
Cdd:pfam00932  22 EFIELYNTGSKA-VDLSGWKLQDASGG----TYTFPNGTTLAPGQTVVVWTGSGTNSA----TAGYWGPSNAVwNNGGDA 92

                          90
                  ....*....|....
gi 1039779989 474 TVLVNPQGQVLSEH 487
Cdd:pfam00932  93 VALYDANGELVDSV 106
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH