NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1622837788|ref|XP_015005985|]
View 

lactosylceramide 4-alpha-galactosyltransferase [Macaca mulatta]

Protein Classification

Gly_transf_sug and Gb3_synth domain-containing protein( domain architecture ID 10376080)

Gly_transf_sug and Gb3_synth domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Gb3_synth pfam04572
Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of ...
 222-349 1.35e-62

Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilize UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region.


:

Pssm-ID: 428017  Cd Length: 130  Bit Score: 195.93  E-value: 1.35e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622837788 222 AFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLA--ESHACRGVTTLPPEAFYPIPWQDWKKYFEDI 299
Cdd:pfam04572   1 AFDKGHPFLELCLRDFVENYNGDEWGHNGPGLLTRVLKKFCNTSDLKamERVRCRGFTVLPPEAFYPIPYPNWKRFFEPE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1622837788 300 NPEELPQLFNATYAVHVWNKKSQGTRFKATSRALLAQLHARYCPTTHKAM 349
Cdd:pfam04572  81 DLEETMKLTKDSYAVHLWNKLSKGEPLKVGSNSLYARLARKHCPRTYAAA 130
Gly_transf_sug super family cl19952
Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short ...
 94-214 4.53e-14

Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases.


The actual alignment was detected with superfamily member pfam04488:

Pssm-ID: 418730 [Multi-domain]  Cd Length: 93  Bit Score: 66.97  E-value: 4.53e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622837788  94 FMCSVESAARTHPESHVLVLMKGLpggnaslprhlgisllscfpnvqMLPLDLQELFRDTP-LADWYAAvqgRWepyLLP 172
Cdd:pfam04488   4 VMKAIESLIKLHPDYCYVVLSDDL-----------------------DFALDINFLKSDTPwFLEAYSL---LP---LFI 54

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1622837788 173 VLSDASRIALMWKFGGIYLDTDFIVLKNLrnltNMLGTQSRY 214
Cdd:pfam04488  55 AKSDLLRYAILYKYGGIYLDTDVIPLKSL----NSIGAQERF 92
 
Name Accession Description Interval E-value
Gb3_synth pfam04572
Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of ...
 222-349 1.35e-62

Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilize UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region.


Pssm-ID: 428017  Cd Length: 130  Bit Score: 195.93  E-value: 1.35e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622837788 222 AFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLA--ESHACRGVTTLPPEAFYPIPWQDWKKYFEDI 299
Cdd:pfam04572   1 AFDKGHPFLELCLRDFVENYNGDEWGHNGPGLLTRVLKKFCNTSDLKamERVRCRGFTVLPPEAFYPIPYPNWKRFFEPE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1622837788 300 NPEELPQLFNATYAVHVWNKKSQGTRFKATSRALLAQLHARYCPTTHKAM 349
Cdd:pfam04572  81 DLEETMKLTKDSYAVHLWNKLSKGEPLKVGSNSLYARLARKHCPRTYAAA 130
Gly_transf_sug pfam04488
Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short ...
 94-214 4.53e-14

Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases.


Pssm-ID: 398274 [Multi-domain]  Cd Length: 93  Bit Score: 66.97  E-value: 4.53e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622837788  94 FMCSVESAARTHPESHVLVLMKGLpggnaslprhlgisllscfpnvqMLPLDLQELFRDTP-LADWYAAvqgRWepyLLP 172
Cdd:pfam04488   4 VMKAIESLIKLHPDYCYVVLSDDL-----------------------DFALDINFLKSDTPwFLEAYSL---LP---LFI 54

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1622837788 173 VLSDASRIALMWKFGGIYLDTDFIVLKNLrnltNMLGTQSRY 214
Cdd:pfam04488  55 AKSDLLRYAILYKYGGIYLDTDVIPLKSL----NSIGAQERF 92
OCH1 COG3774
Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis];
175-234 3.79e-06

Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442988 [Multi-domain]  Cd Length: 136  Bit Score: 45.65  E-value: 3.79e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622837788 175 SDASRIALMWKFGGIYLDTDFIVLKNLRNLTNM----LGTQ--SRYVLNGAFLAFERRHEFMALCM 234
Cdd:COG3774    70 ADLFRLLLLYKYGGIYLDIDVECLKPLDPLLDGddlfLGYEdpPPGIISNGFIAAEPGHPFLKKAL 135
 
Name Accession Description Interval E-value
Gb3_synth pfam04572
Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of ...
 222-349 1.35e-62

Alpha 1,4-glycosyltransferase conserved region; The glycosphingolipids (GSL) form part of eukaryotic cell membranes. They consist of a hydrophilic carbohydrate moiety linked to a hydrophobic ceramide tail embedded within the lipid bilayer of the membrane. Lactosylceramide, Gal1,4Glc1Cer (LacCer), is the common synthetic precursor to the majority of GSL found in vertebrates. Alpha 1.4-glycosyltransferases utilize UDP donors and transfer the sugar to a beta-linked acceptor. This region appears to be confined to higher eukaryotes. No function has been yet assigned to this region.


Pssm-ID: 428017  Cd Length: 130  Bit Score: 195.93  E-value: 1.35e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622837788 222 AFERRHEFMALCMRDFVDHYNGWIWGHQGPQLLTRVFKKWCSIRSLA--ESHACRGVTTLPPEAFYPIPWQDWKKYFEDI 299
Cdd:pfam04572   1 AFDKGHPFLELCLRDFVENYNGDEWGHNGPGLLTRVLKKFCNTSDLKamERVRCRGFTVLPPEAFYPIPYPNWKRFFEPE 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 1622837788 300 NPEELPQLFNATYAVHVWNKKSQGTRFKATSRALLAQLHARYCPTTHKAM 349
Cdd:pfam04572  81 DLEETMKLTKDSYAVHLWNKLSKGEPLKVGSNSLYARLARKHCPRTYAAA 130
Gly_transf_sug pfam04488
Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short ...
 94-214 4.53e-14

Glycosyltransferase sugar-binding region containing DXD motif; The DXD motif is a short conserved motif found in many families of glycosyltransferases, which add a range of different sugars to other sugars, phosphates and proteins. DXD-containing glycosyltransferases all use nucleoside diphosphate sugars as donors and require divalent cations, usually manganese. The DXD motif is expected to play a carbohydrate binding role in sugar-nucleoside diphosphate and manganese dependent glycosyltransferases.


Pssm-ID: 398274 [Multi-domain]  Cd Length: 93  Bit Score: 66.97  E-value: 4.53e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622837788  94 FMCSVESAARTHPESHVLVLMKGLpggnaslprhlgisllscfpnvqMLPLDLQELFRDTP-LADWYAAvqgRWepyLLP 172
Cdd:pfam04488   4 VMKAIESLIKLHPDYCYVVLSDDL-----------------------DFALDINFLKSDTPwFLEAYSL---LP---LFI 54

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1622837788 173 VLSDASRIALMWKFGGIYLDTDFIVLKNLrnltNMLGTQSRY 214
Cdd:pfam04488  55 AKSDLLRYAILYKYGGIYLDTDVIPLKSL----NSIGAQERF 92
OCH1 COG3774
Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis];
175-234 3.79e-06

Mannosyltransferase OCH1 or related enzyme [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442988 [Multi-domain]  Cd Length: 136  Bit Score: 45.65  E-value: 3.79e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622837788 175 SDASRIALMWKFGGIYLDTDFIVLKNLRNLTNM----LGTQ--SRYVLNGAFLAFERRHEFMALCM 234
Cdd:COG3774    70 ADLFRLLLLYKYGGIYLDIDVECLKPLDPLLDGddlfLGYEdpPPGIISNGFIAAEPGHPFLKKAL 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH