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Conserved domains on  [gi|1622841228|ref|XP_015005368|]
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calcineurin-binding protein cabin-1 isoform X7 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MEF2_binding pfam09047
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ...
 2066-2095 1.35e-11

MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.


:

Pssm-ID: 370261 [Multi-domain]  Cd Length: 35  Bit Score: 60.64  E-value: 1.35e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 1622841228 2066 QGSISEETKQKLKSAILSAQSAANVRKESL 2095
Cdd:pfam09047    6 KGSISEETKQKLKNAILSAQSAANVKKDSL 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
30-205 4.12e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 4.12e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEarllreavssgdekeglKHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----------------LDPDD---AEALYNLGLAYLRLGRYEEA 61

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228  110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDC 189
Cdd:COG0457     62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141

                          170
                   ....*....|....*.
gi 1622841228  190 RYSKGLVLKEKIFEEQ 205
Cdd:COG0457    142 DDADALYNLGIALEKL 157
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 1911-2062 1.50e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 1.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1911 GAAAQRQASGDTPTTPKHPKDSRENF------FPVTVAPTAPDPVPADSAQRPSD--------AHTKPRPALAAATTVIT 1976
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPrgpappSPLPPDTHAPDPPPPSPSPAANEpdphppptVPPPERPRDDPAPGRVS 2662

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1977 CPPSASASTLDLSKDPGPPRPHRHEATPSMASL---------GPEGEELARVAEGTGFPPQEPRCSAQVKTAPTSSPAEP 2047
Cdd:PHA03247  2663 RPRRARRLGRAAQASSPPQRPRRRAARPTVGSLtsladppppPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742

                          170
                   ....*....|....*
gi 1622841228 2048 HCWPAEAAPGTGTEP 2062
Cdd:PHA03247  2743 AVPAGPATPGGPARP 2757
 
Name Accession Description Interval E-value
MEF2_binding pfam09047
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ...
 2066-2095 1.35e-11

MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.


Pssm-ID: 370261 [Multi-domain]  Cd Length: 35  Bit Score: 60.64  E-value: 1.35e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 1622841228 2066 QGSISEETKQKLKSAILSAQSAANVRKESL 2095
Cdd:pfam09047    6 KGSISEETKQKLKNAILSAQSAANVKKDSL 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
30-205 4.12e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 4.12e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEarllreavssgdekeglKHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----------------LDPDD---AEALYNLGLAYLRLGRYEEA 61

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228  110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDC 189
Cdd:COG0457     62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141

                          170
                   ....*....|....*.
gi 1622841228  190 RYSKGLVLKEKIFEEQ 205
Cdd:COG0457    142 DDADALYNLGIALEKL 157
MEF2_binding cd13839
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; ...
 2066-2095 8.47e-11

Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; The myocyte enhancer factor-2 (MEF2) binding domain, as found in the calcineurin-binding protein cabin-1, adopts an amphipathic alpha-helical structure, which allows it to bind to a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription. Cabin-1 inhibits calcineurin-mediated signal transduction in T-cell receptor-mediated signalling pathways, by binding to the activated form of calcineurin. Cabin-1 acts as a co-repressor of MEF2, the mycocyte enhancer factor-2, which regulates transcription in a calcium-dependent manner and plays vital roles in T-cell development and function.


Pssm-ID: 260103 [Multi-domain]  Cd Length: 35  Bit Score: 58.55  E-value: 8.47e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 1622841228 2066 QGSISEETKQKLKSAILSAQSAANVRKESL 2095
Cdd:cd13839      6 KGSISEETKQKLKNAILSSQSAANVKKDTL 35
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1911-2062 1.50e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 1.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1911 GAAAQRQASGDTPTTPKHPKDSRENF------FPVTVAPTAPDPVPADSAQRPSD--------AHTKPRPALAAATTVIT 1976
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPrgpappSPLPPDTHAPDPPPPSPSPAANEpdphppptVPPPERPRDDPAPGRVS 2662

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1977 CPPSASASTLDLSKDPGPPRPHRHEATPSMASL---------GPEGEELARVAEGTGFPPQEPRCSAQVKTAPTSSPAEP 2047
Cdd:PHA03247  2663 RPRRARRLGRAAQASSPPQRPRRRAARPTVGSLtsladppppPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742

                          170
                   ....*....|....*
gi 1622841228 2048 HCWPAEAAPGTGTEP 2062
Cdd:PHA03247  2743 AVPAGPATPGGPARP 2757
TPR_12 pfam13424
Tetratricopeptide repeat;
36-119 2.59e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 2.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   36 AFALYHKALDLQKHDRFEESAKAYHELLEarlLREAVSSGDekeglkHPGLILkysTYKNLAQLAAQREDLETAMEFYLE 115
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALE---IARRLLGPD------HPLTAT---TLLNLGRLYLELGRYEEALELLER 70


                   ....
gi 1622841228  116 AVML 119
Cdd:pfam13424   71 ALAL 74
 
Name Accession Description Interval E-value
MEF2_binding pfam09047
MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the ...
 2066-2095 1.35e-11

MEF2 binding; The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription.


Pssm-ID: 370261 [Multi-domain]  Cd Length: 35  Bit Score: 60.64  E-value: 1.35e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 1622841228 2066 QGSISEETKQKLKSAILSAQSAANVRKESL 2095
Cdd:pfam09047    6 KGSISEETKQKLKNAILSAQSAANVKKDSL 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
30-205 4.12e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 65.41  E-value: 4.12e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEarllreavssgdekeglKHPGLilkYSTYKNLAQLAAQREDLETA 109
Cdd:COG0457      2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE-----------------LDPDD---AEALYNLGLAYLRLGRYEEA 61

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228  110 MEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKDC 189
Cdd:COG0457     62 LADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDP 141

                          170
                   ....*....|....*.
gi 1622841228  190 RYSKGLVLKEKIFEEQ 205
Cdd:COG0457    142 DDADALYNLGIALEKL 157
MEF2_binding cd13839
Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; ...
 2066-2095 8.47e-11

Mycocyte enhancer factor-2 (MEF2) binding domain of the calcineurin-binding protein cabin-1; The myocyte enhancer factor-2 (MEF2) binding domain, as found in the calcineurin-binding protein cabin-1, adopts an amphipathic alpha-helical structure, which allows it to bind to a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription. Cabin-1 inhibits calcineurin-mediated signal transduction in T-cell receptor-mediated signalling pathways, by binding to the activated form of calcineurin. Cabin-1 acts as a co-repressor of MEF2, the mycocyte enhancer factor-2, which regulates transcription in a calcium-dependent manner and plays vital roles in T-cell development and function.


Pssm-ID: 260103 [Multi-domain]  Cd Length: 35  Bit Score: 58.55  E-value: 8.47e-11
                           10        20        30
                   ....*....|....*....|....*....|
gi 1622841228 2066 QGSISEETKQKLKSAILSAQSAANVRKESL 2095
Cdd:cd13839      6 KGSISEETKQKLKNAILSSQSAANVKKDTL 35
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
34-199 5.08e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 62.33  E-value: 5.08e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   34 AEAFALYHKALDLQkhdrfEESAKAYHELleARLLREAvssGDEKEGLKH--------PGLIlkySTYKNLAQLAAQRED 105
Cdd:COG0457     25 EEAIEDYEKALELD-----PDDAEALYNL--GLAYLRL---GRYEEALADyeqaleldPDDA---EALNNLGLALQALGR 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228  106 LETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKAL 185
Cdd:COG0457     92 YEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLE 171

                          170
                   ....*....|....
gi 1622841228  186 EKDCRYSKGLVLKE 199
Cdd:COG0457    172 AAALAALLAAALGE 185
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 27-188 1.56e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 1.56e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   27 QTKEAQEAEAFALYHKALDLQKHDRFEESAKAYHELLEARLLREAvssGDEKEGLKHPGLILK-----YSTYKNLAQLAA 101
Cdd:COG3914     47 LLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQAL---GRYEEALALYRRALAlnpdnAEALFNLGNLLL 123

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228  102 QREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFI 181
Cdd:COG3914    124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203


                   ....*..
gi 1622841228  182 CKALEKD 188
Cdd:COG3914    204 RRALELD 210
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 30-205 6.51e-09

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 59.36  E-value: 6.51e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   30 EAQEAEAFALYHKALDLQKHDRFEESAKAYHELLE---------ARLLREAVSSGDEKEGLKHPGLILKYS-----TYKN 95
Cdd:COG2956     70 ERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLEldpddaealRLLAEIYEQEGDWEKAIEVLERLLKLGpenahAYCE 149

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   96 LAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYT 175
Cdd:COG2956    150 LAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPE 229

                          170       180       190
                   ....*....|....*....|....*....|
gi 1622841228  176 TCLYFICKALEKDCRYSKGLVLKEKIFEEQ 205
Cdd:COG2956    230 EALELLRKALELDPSDDLLLALADLLERKE 259
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 33-188 6.05e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.66  E-value: 6.05e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   33 EAEAFALYHKALDLQKHDRFEESAKAYHELLEArllreavsSGDEKEGlkhpglilkystYKNLAQLAAQREDLETAMEF 112
Cdd:COG4783      1 AACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEA------------FALLGEILLQLGDLDEAIVL 60

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622841228  113 YLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG4783     61 LHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 38-188 1.52e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 49.96  E-value: 1.52e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   38 ALYHKALDLQKHDRFEESAKAYHELLEARLLREAVSSGDEKEGLKHPGLILKYSTYKNLAQLAAQREDLETAMEFYLEAV 117
Cdd:COG5010      2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622841228  118 MLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCLYFICKALEKD 188
Cdd:COG5010     82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
99-188 5.01e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 5.01e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   99 LAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARhAFEEGLRCNPDHWPCLDNLITVLYTLSDYTTCL 178
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|
gi 1622841228  179 YFICKALEKD 188
Cdd:COG3063     80 AYLERALELD 89
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1911-2062 1.50e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 1.50e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1911 GAAAQRQASGDTPTTPKHPKDSRENF------FPVTVAPTAPDPVPADSAQRPSD--------AHTKPRPALAAATTVIT 1976
Cdd:PHA03247  2583 TSRARRPDAPPQSARPRAPVDDRGDPrgpappSPLPPDTHAPDPPPPSPSPAANEpdphppptVPPPERPRDDPAPGRVS 2662

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1977 CPPSASASTLDLSKDPGPPRPHRHEATPSMASL---------GPEGEELARVAEGTGFPPQEPRCSAQVKTAPTSSPAEP 2047
Cdd:PHA03247  2663 RPRRARRLGRAAQASSPPQRPRRRAARPTVGSLtsladppppPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742

                          170
                   ....*....|....*
gi 1622841228 2048 HCWPAEAAPGTGTEP 2062
Cdd:PHA03247  2743 AVPAGPATPGGPARP 2757
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
29-174 2.17e-05

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 47.99  E-value: 2.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   29 KEAQEAEAFALYHKALDLQKHDRFEE-------SAKAYHELLEARLLREAVSSGDEKEGLKHPGLIlkySTYKNLAQLAA 101
Cdd:COG4785      8 LLLALALAAAAASKAAILLAALLFAAvlalaiaLADLALALAAAALAAAALAAERIDRALALPDLA---QLYYERGVAYD 84

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622841228  102 QREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG4785     85 SLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRY 157
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 95-174 2.18e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 2.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   95 NLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG4235     22 LLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDY 101
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1918-2068 3.00e-05

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 49.40  E-value: 3.00e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1918 ASGDTPTTPKHPKDSRENFFPVTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATT--VITCPPSASAsTLDLSKDPG-- 1993
Cdd:PHA03307   124 ASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPeeTARAPSSPPA-EPPPSTPPAaa 202

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1994 ---PPRPHRHEATPSM---ASLGPEGEELARVAEGTGFPPQEPRCSAQVKTA---PTSSPAEPHCWPAEAAPGTGTEPTC 2064
Cdd:PHA03307   203 sprPPRRSSPISASASspaPAPGRSAADDAGASSSDSSSSESSGCGWGPENEcplPRPAPITLPTRIWEASGWNGPSSRP 282


                   ....
gi 1622841228 2065 SQGS 2068
Cdd:PHA03307   283 GPAS 286
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 1938-2044 3.97e-05

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 47.93  E-value: 3.97e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1938 PVTVAPTAPDP-VPADSAQRPS-------DAHTKPRPALAA-ATTVITCPPSASASTLDLSKDPGPPRPHRHEATPSMAS 2008
Cdd:PHA02682    76 PSGQSPLAPSPaCAAPAPACPAcapaapaPAVTCPAPAPACpPATAPTCPPPAVCPAPARPAPACPPSTRQCPPAPPLPT 155

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 1622841228 2009 LGPEGEELARVAEGTGFPPQEPRCSA-QVKTAPTSSP 2044
Cdd:PHA02682   156 PKPAPAAKPIFLHNQLPPPDYPAASCpTIETAPAASP 192
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1893-2060 5.32e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 48.33  E-value: 5.32e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1893 VDEEAALEQAVKFCQVHLGAAAQRQASGDTPTTPK----HPKDSRENFFPVTVAPTAPDPVPADS-AQRPSDAHTKPRPA 1967
Cdd:PRK12323   395 AAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApealAAARQASARGPGGAPAPAPAPAAAPAaAARPAAAGPRPVAA 474

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1968 LAAATTVITCPPSASASTLD-------LSKDPGPPRPHRHEATPSMASLGPEGEELARVAEGTgFPPQEPRCSAQVKTAP 2040
Cdd:PRK12323   475 AAAAAPARAAPAAAPAPADDdpppweeLPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDA-FETLAPAPAAAPAPRA 553

                          170       180
                   ....*....|....*....|..
gi 1622841228 2041 T--SSPAEPHCWPAEAAPGTGT 2060
Cdd:PRK12323   554 AaaTEPVVAPRPPRASASGLPD 575
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 1-155 5.67e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 45.34  E-value: 5.67e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228    1 MIRIAALNASSTIEDDHEGSFKSHKTQTKEAQEAEAFALYHKALDLQKhdRFEESAKAYHELLEArllreavssgdekeg 80
Cdd:COG5010     21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLG--DFEESLALLEQALQL--------------- 83

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622841228   81 lkHPGlilKYSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNP 155
Cdd:COG5010     84 --DPN---NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 1912-2073 2.38e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.52  E-value: 2.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1912 AAAQRQASGDTPTTPKHPKDSRENFFPVTVAPTAPDPVPaDSAQRPSDAHTKPRPALAAATTVITCPPSASASTLDLSKD 1991
Cdd:PRK07764   622 AAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP-DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQ 700

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1992 PGPPRPHRH------EATPSMASLGPEGEELARVAEGTGFPPQEPRCSAQVKTAPTSSPAEPhcwPAEAAPGTGTEPTCS 2065
Cdd:PRK07764   701 PAPAPAATPpagqadDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPP---APAPAAAPAAAPPPS 777


                   ....*...
gi 1622841228 2066 QGSISEET 2073
Cdd:PRK07764   778 PPSEEEEM 785
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1918-2062 2.74e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.47  E-value: 2.74e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1918 ASGDTPTTPKHPKDSRENFFPVTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATTVITCPPSASASTLDLSkdPGPPR- 1996
Cdd:PHA03247  2697 SLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA--PAPPAa 2774

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622841228 1997 ----PHRHEATPSMASLGPEGEELARVAEGTGFP-PQEPRCSAQVKTAPTSSPAEPHCWPAEAAPGTGTEP 2062
Cdd:PHA03247  2775 paagPPRRLTRPAVASLSESRESLPSPWDPADPPaAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 1940-2063 4.96e-04

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 45.10  E-value: 4.96e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1940 TVAPTAPDPVPADSAQrpsdAHTKPRPALAAATTVITCPPSASASTLDLSKDPGP-PRPHrheatpSMASLGPEgeelar 2018
Cdd:PHA03269    34 SAATQKPDPAPAPHQA----ASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPaPAPH------QAASRAPD------ 97

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 1622841228 2019 vaegtgfppqePRCSAQVKTAPTSSPAEPHCWPAEAAPGTGTEPT 2063
Cdd:PHA03269    98 -----------PAVAPQLAAAPKPDAAEAFTSAAQAHEAPADAGT 131
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
1917-2062 5.88e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.87  E-value: 5.88e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1917 QASGDT-PTTPKHPKDSRENffPVTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATTVITCPPSASAstLDLSKDPGPP 1995
Cdd:PRK12323   367 QSGGGAgPATAAAAPVAQPA--PAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEA--LAAARQASAR 442

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622841228 1996 RPHRHEATPSMASLGPEGEELARVAEGTGFPPQEPRCSAQVKTAPTSSPAEPHCWPAEAAPGTGTEP 2062
Cdd:PRK12323   443 GPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP 509
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1910-2062 6.08e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 6.08e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1910 LGAAAQRQASGDTPTTPKHPK----------DSRENFFPVTVAPTAPDPvPADSAQRPSDAHTKPRPALAAATTV----- 1974
Cdd:PHA03247  2723 PGPAAARQASPALPAAPAPPAvpagpatpggPARPARPPTTAGPPAPAP-PAAPAAGPPRRLTRPAVASLSESREslpsp 2801

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1975 -----ITCPPSASASTLDLSKDPGPPRPHRHEATPSMASLGPEgeelarvaegtGFPPQEPRCSAQVKTAPTSSPAEPHc 2049
Cdd:PHA03247  2802 wdpadPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG-----------PPPPSLPLGGSVAPGGDVRRRPPSR- 2869

                          170
                   ....*....|...
gi 1622841228 2050 wPAEAAPGTGTEP 2062
Cdd:PHA03247  2870 -SPAAKPAAPARP 2881
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
92-158 6.59e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 40.92  E-value: 6.59e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622841228   92 TYKNLAQLAAQREDLETAMEFyLEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHW 158
Cdd:COG3063     28 ALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1936-2063 6.62e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 6.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1936 FFPVTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATTVITCPPSASASTLDLSKDPGPPRPHRHEATPSMASLGPEGEE 2015
Cdd:PRK14951   364 FKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 1622841228 2016 LARVAEGTGFPPQEPRCSAQVKTAPTSSPAEPHCWPAEAAPGTGTEPT 2063
Cdd:PRK14951   444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPT 491
PHA03247 PHA03247
large tegument protein UL36; Provisional
 1912-2057 7.57e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 7.57e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1912 AAAQRQASGDTPTTPKHPkdsrenffPVTVAPTAPDPVPA----------------DSAQRPSDAHTKPRPALAAATTVI 1975
Cdd:PHA03247  2813 APAAALPPAASPAGPLPP--------PTSAQPTAPPPPPGppppslplggsvapggDVRRRPPSRSPAAKPAAPARPPVR 2884

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1976 TCP-PSASASTLDLSKDPGPPRPHRHEATPSMASLGPEGEELARVA---EGTGFPPQEPRCSAQVKTAPTSSPAEPHCWP 2051
Cdd:PHA03247  2885 RLArPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQpppPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWL 2964


                   ....*.
gi 1622841228 2052 AEAAPG 2057
Cdd:PHA03247  2965 GALVPG 2970
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1912-2056 1.38e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 43.68  E-value: 1.38e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1912 AAAQRQASGDTPTTPKHPkdsrenffPVTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATTVITCPPSASAstldlskd 1991
Cdd:PRK07003   428 AAPAPPATADRGDDAADG--------DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFE-------- 491

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622841228 1992 pgpPRPHRHEATPSMASLGPEGEELARVAEGTGFPPQEPRcsaqvktAPTSSPAEphcwPAEAAP 2056
Cdd:PRK07003   492 ---PAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPP-------APEARPPT----PAAAAP 542
TPR_12 pfam13424
Tetratricopeptide repeat;
36-119 2.59e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 38.52  E-value: 2.59e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   36 AFALYHKALDLQKHDRFEESAKAYHELLEarlLREAVSSGDekeglkHPGLILkysTYKNLAQLAAQREDLETAMEFYLE 115
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALE---IARRLLGPD------HPLTAT---TLLNLGRLYLELGRYEEALELLER 70


                   ....
gi 1622841228  116 AVML 119
Cdd:pfam13424   71 ALAL 74
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 1936-2012 3.41e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 42.25  E-value: 3.41e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622841228 1936 FFPVTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATTviTCPPSASASTLDLSKDPGPPRPHRHEATPSMASLGPE 2012
Cdd:PHA03291   203 FVPATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPST--TIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATPAPE 277
TPR_21 pfam09976
Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.
 48-151 3.70e-03

Tetratricopeptide repeat-like domain; This family resembles a single unit of a TPR repeat.


Pssm-ID: 430959 [Multi-domain]  Cd Length: 194  Bit Score: 40.65  E-value: 3.70e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   48 KHDRFEESAKAYHELLEArllreaVSSGDEKEGL--------KHPGlilkySTYKNLAQLAAQRE-----DLETAMEfYL 114
Cdd:pfam09976   32 QRSQAEEASALYQQLLEA------VAAGDAAKAQaaaaqlkdEYGG-----TGYAALAALLLAKAaveagDLAAAKA-QL 99

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 1622841228  115 EAVMLDSTDVNLwykiGHVA-LRLIRIPLARHAFEEGL 151
Cdd:pfam09976  100 EWVADNAKDEAL----KALArLRLARVLLAQGKYDEAL 133
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 1906-2075 4.53e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 4.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1906 CQVHLGAAAQRQASGDTPTTPKHPKDSRENffpvTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATTvitcppsasast 1985
Cdd:PRK07764   582 WQVEAVVGPAPGAAGGEGPPAPASSGPPEE----AARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP------------ 645

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1986 ldlsKDPGPPRPHRHEATPS-MASLGPEGEELARVAEGTGFPPQEPRCSAQVKTAPTSSPAEPHCWPAEAAPGTGTEPTC 2064
Cdd:PRK07764   646 ----GVAAPEHHPKHVAVPDaSDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQP 721

                          170
                   ....*....|.
gi 1622841228 2065 SQGSISEETKQ 2075
Cdd:PRK07764   722 PQAAQGASAPS 732
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 34-174 4.63e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 41.25  E-value: 4.63e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228   34 AEAFALYHKALDLQKHDRFEESAKAYHELLEarllreavssgdekeglKHPGLIlkySTYKNLAQLAAQREDLETAMEFY 113
Cdd:COG2956      6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALE-----------------LDPETV---EAHLALGNLYRRRGEYDRAIRIH 65

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622841228  114 LEAVMLDSTDVNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDHWPCLDNLITVLYTLSDY 174
Cdd:COG2956     66 QKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDW 126
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 1911-2062 5.68e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 41.47  E-value: 5.68e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1911 GAAAQRQASGDTPTTPKHPKDSRenffpvTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATTVITCPPSASASTldlSK 1990
Cdd:PTZ00436   196 AAAAKQKAAAKKAAAPSGKKSAK------AAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPP---AK 266

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622841228 1991 DPGPPrphRHEATPSMASLGPEGEELARVAEGTGFPPQEPRCSAQVKTAPTSSPAEPHcwPAEAAPGTGTEP 2062
Cdd:PTZ00436   267 AAAPP---AKAAAPPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPA--KAAAPPAKAATP 333
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 1911-2053 5.94e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 41.62  E-value: 5.94e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1911 GAAAQRQASGDTPTTPKH--PKDSREnffPVTVAPTAPDPVP--ADSAQRPSDAHTKPRPALAAATTVITCPPSASASTL 1986
Cdd:PRK14951   369 AAEAAAPAEKKTPARPEAaaPAAAPV---AQAAAAPAPAAAPaaAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAV 445

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622841228 1987 DLSKDPGPPRPHRHEATPsmaslgpegeelARVAEGTGFPPQEPrcsaqvktAPTSSPAEPHCWPAE 2053
Cdd:PRK14951   446 ALAPAPPAQAAPETVAIP------------VRVAPEPAVASAAP--------APAAAPAAARLTPTE 492
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1941-2099 9.13e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 9.13e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1941 VAPTAPDPVPADSAQRPSDAHTKPRPALAAATTVITCPPSASASTldlskdpgPPRPHRHEATPSMASLGPEGEELARVA 2020
Cdd:PRK07003   372 VPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAA--------AAAATRAEAPPAAPAPPATADRGDDAA 443

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 2021 EGTGFPPQEPRCSAQVKTAPTSSPAEPHCWPAEAA-------PGTGTEPTCSQGSISEETKQKLKSAILSAQSAANVRKE 2093
Cdd:PRK07003   444 DGDAPVPAKANARASADSRCDERDAQPPADSGSASapasdapPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPA 523


                   ....*.
gi 1622841228 2094 SLCQPA 2099
Cdd:PRK07003   524 AAAPPA 529
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
1912-2068 9.21e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.99  E-value: 9.21e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1912 AAAQRQASGDTPTTPKHPKdsrenffPVTVAPTAPDPVPADSAQRPSDAHTKPRPALAAATTVITCPPSASASTLDLSKD 1991
Cdd:PRK07003   395 AVPAVTAVTGAAGAALAPK-------AAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERD 467

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622841228 1992 PGPPRPHRHEATPSMASLGPEGEELA----RVAEGTGFPPQEPRCSAQVKTAPTSSP-AEPHCWPAEAAPGTGTEPTCSQ 2066
Cdd:PRK07003   468 AQPPADSGSASAPASDAPPDAAFEPApraaAPSAATPAAVPDARAPAAASREDAPAAaAPPAPEARPPTPAAAAPAARAG 547


                   ..
gi 1622841228 2067 GS 2068
Cdd:PRK07003   548 GA 549
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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