eukaryotic translation initiation factor 6 isoform X2 [Macaca mulatta]
eukaryotic translation initiation factor 6( domain architecture ID 5969)
eukaryotic translation initiation factor 6 (eIF6) affects the maturation of 60S ribosomal subunits which is located primarily in the cytoplasm of mammalian cells
List of domain hits
Name | Accession | Description | Interval | E-value | |||
IF6 super family | cl00241 | Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two ... |
59-182 | 2.49e-83 | |||
Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. The actual alignment was detected with superfamily member PTZ00136: Pssm-ID: 469681 Cd Length: 247 Bit Score: 251.58 E-value: 2.49e-83
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Name | Accession | Description | Interval | E-value | |||
PTZ00136 | PTZ00136 | eukaryotic translation initiation factor 6-like protein; Provisional |
59-182 | 2.49e-83 | |||
eukaryotic translation initiation factor 6-like protein; Provisional Pssm-ID: 185471 Cd Length: 247 Bit Score: 251.58 E-value: 2.49e-83
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IF6 | cd00527 | Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two ... |
64-182 | 7.50e-71 | |||
Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Pssm-ID: 238292 Cd Length: 220 Bit Score: 218.69 E-value: 7.50e-71
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eIF6 | smart00654 | translation initiation factor 6; |
64-182 | 7.69e-71 | |||
translation initiation factor 6; Pssm-ID: 128902 Cd Length: 200 Bit Score: 217.91 E-value: 7.69e-71
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eIF-6 | pfam01912 | eIF-6 family; This family includes eukaryotic translation initiation factor 6 as well as ... |
64-183 | 1.82e-68 | |||
eIF-6 family; This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologs. Pssm-ID: 460381 Cd Length: 196 Bit Score: 211.91 E-value: 1.82e-68
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eIF-6 | TIGR00323 | translation initiation factor eIF-6, putative; This model finds translation initiation factor ... |
65-182 | 4.03e-45 | |||
translation initiation factor eIF-6, putative; This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative. [Protein synthesis, Translation factors] Pssm-ID: 211569 Cd Length: 216 Bit Score: 152.66 E-value: 4.03e-45
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TIF6 | COG1976 | Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; ... |
64-183 | 3.50e-38 | |||
Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; Translation initiation factor 6 (eIF-6) is part of the Pathway/BioSystem: Translation factors Pssm-ID: 441579 Cd Length: 221 Bit Score: 134.87 E-value: 3.50e-38
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Name | Accession | Description | Interval | E-value | |||
PTZ00136 | PTZ00136 | eukaryotic translation initiation factor 6-like protein; Provisional |
59-182 | 2.49e-83 | |||
eukaryotic translation initiation factor 6-like protein; Provisional Pssm-ID: 185471 Cd Length: 247 Bit Score: 251.58 E-value: 2.49e-83
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IF6 | cd00527 | Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two ... |
64-182 | 7.50e-71 | |||
Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function. Pssm-ID: 238292 Cd Length: 220 Bit Score: 218.69 E-value: 7.50e-71
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eIF6 | smart00654 | translation initiation factor 6; |
64-182 | 7.69e-71 | |||
translation initiation factor 6; Pssm-ID: 128902 Cd Length: 200 Bit Score: 217.91 E-value: 7.69e-71
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eIF-6 | pfam01912 | eIF-6 family; This family includes eukaryotic translation initiation factor 6 as well as ... |
64-183 | 1.82e-68 | |||
eIF-6 family; This family includes eukaryotic translation initiation factor 6 as well as presumed archaebacterial homologs. Pssm-ID: 460381 Cd Length: 196 Bit Score: 211.91 E-value: 1.82e-68
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eIF-6 | TIGR00323 | translation initiation factor eIF-6, putative; This model finds translation initiation factor ... |
65-182 | 4.03e-45 | |||
translation initiation factor eIF-6, putative; This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative. [Protein synthesis, Translation factors] Pssm-ID: 211569 Cd Length: 216 Bit Score: 152.66 E-value: 4.03e-45
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TIF6 | COG1976 | Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; ... |
64-183 | 3.50e-38 | |||
Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; Translation initiation factor 6 (eIF-6) is part of the Pathway/BioSystem: Translation factors Pssm-ID: 441579 Cd Length: 221 Bit Score: 134.87 E-value: 3.50e-38
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PRK04046 | PRK04046 | translation initiation factor IF-6; Provisional |
64-180 | 1.21e-35 | |||
translation initiation factor IF-6; Provisional Pssm-ID: 179728 Cd Length: 222 Bit Score: 128.00 E-value: 1.21e-35
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PRK04046 | PRK04046 | translation initiation factor IF-6; Provisional |
109-183 | 7.31e-11 | |||
translation initiation factor IF-6; Provisional Pssm-ID: 179728 Cd Length: 222 Bit Score: 60.98 E-value: 7.31e-11
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TIF6 | COG1976 | Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; ... |
110-182 | 1.54e-09 | |||
Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]; Translation initiation factor 6 (eIF-6) is part of the Pathway/BioSystem: Translation factors Pssm-ID: 441579 Cd Length: 221 Bit Score: 57.06 E-value: 1.54e-09
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Blast search parameters | ||||
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