|
Name |
Accession |
Description |
Interval |
E-value |
| TBC |
smart00164 |
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ... |
160-368 |
5.77e-84 |
|
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Pssm-ID: 214540 [Multi-domain] Cd Length: 216 Bit Score: 266.09 E-value: 5.77e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 160 VRKGIPHHFRAIVWQLLCSAQSMPI---KDQYSELLKMTSPCEKL----IRRDIARTYPEHNFFKEKDSLGQEVLFNVMK 232
Cdd:smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDTsadKDLYSRLLKETAPDDKSivhqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 233 AYSLVDREVGYCQGSAFIVGLLLMQMP-EEEAFCVFVKLMQDYRLReLFKPSMAELGLCMYQFECMIQEHLPELFVHFQS 311
Cdd:smart00164 81 AYALYNPEVGYCQGMNFLAAPLLLVMEdEEDAFWCLVKLMERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 966918821 312 QSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELM 368
Cdd:smart00164 160 LGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
|
|
| RabGAP-TBC |
pfam00566 |
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ... |
200-368 |
1.80e-55 |
|
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.
Pssm-ID: 459855 Cd Length: 178 Bit Score: 188.23 E-value: 1.80e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 200 KLIRRDIARTYPEHNFFKEKDslGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQ-MPEEEAFCVFVKLMQDYRLRE 278
Cdd:pfam00566 10 EQIEKDVPRTFPHSFFFDNGP--GQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVyLDEEDAFWCFVSLLENYLLRD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 279 LFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIV-FRVGL 357
Cdd:pfam00566 88 FYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVlFRVAL 167
|
170
....*....|.
gi 966918821 358 ALLQMNQAELM 368
Cdd:pfam00566 168 AILKRFREELL 178
|
|
| COG5210 |
COG5210 |
GTPase-activating protein [General function prediction only]; |
131-377 |
6.90e-45 |
|
GTPase-activating protein [General function prediction only];
Pssm-ID: 227535 [Multi-domain] Cd Length: 496 Bit Score: 168.83 E-value: 6.90e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 131 EEDSWILWGRIVN-EWEDVRKKKEKQVKELVRKGIPHHFRAIVWQLLcsAQSMPIKDQ----YSELLKM-------TSPC 198
Cdd:COG5210 179 ELAADKLWISYLDpNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFL--LGIGFDLDKnpglYERLLNLhreakipTQEI 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 199 EKLIRRDIARTYPEHNFFKEKDSLGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLMQMPEEE-AFCVFVKLMQDYRLR 277
Cdd:COG5210 257 ISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEqAFWCLVKLLKNYGLP 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 278 ELFKPSMAELGLCMYQFECMIQEHLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGL 357
Cdd:COG5210 337 GYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLAL 416
|
250 260
....*....|....*....|
gi 966918821 358 ALLQMNQAELMQLDMEGMLQ 377
Cdd:COG5210 417 AILKLLRDKLLKLDSDELLD 436
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
406-725 |
6.70e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 6.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 406 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQS 485
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 486 DEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIA 565
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELA--------------EAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL--AAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 566 RLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwqrhlarttgrwkdppkknAMNELQDELMTIRLREAETQAEIREIKQ 645
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEE--------------------EEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 646 KMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELR 725
Cdd:COG1196 464 LLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAA 543
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
424-763 |
2.59e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 2.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 424 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQvtraqeaEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQ 503
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELE-------EELEQLRKELEELSRQISALRKDLARLEAEVEQLE 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 504 HQQQwhkcssnYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRnnslpdennIARLQEELIAVKLREAEAIM 583
Cdd:TIGR02168 747 ERIA-------QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ---------IEQLKEELKALREALDELRA 810
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 584 GLKELRQQVKDLEEHWQRHLARTTgrwkdpPKKNAMNELQDELMTIRLREAETQAEIREIKQKMMEMETQNQINSNHLRR 663
Cdd:TIGR02168 811 ELTLLNEEAANLRERLESLERRIA------ATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 664 AEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQaeIECKNKEEVMAVRLREADsiAAVAELRQHIAELEIQKEEGKLQGQ 743
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRREL--EELREKLAQLELRLEGLE--VRIDNLQERLSEEYSLTLEEAEALE 960
|
330 340
....*....|....*....|....
gi 966918821 744 LNKSDSNQYIRE----LKDQIAEL 763
Cdd:TIGR02168 961 NKIEDDEEEARRrlkrLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
406-762 |
1.05e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 1.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 406 KKMKKLEKEY-TTIKTKEMEEQVEIKRLRtenrLLKQRIETLEKESASLadrliQGQVTRAQEAEENylIKRELATIKQQ 484
Cdd:TIGR02168 200 RQLKSLERQAeKAERYKELKAELRELELA----LLVLRLEELREELEEL-----QEELKEAEEELEE--LTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 485 SDEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlqlekeLVQARLSEAESQcalKEMQDkvldiEKRNNSlpdENNI 564
Cdd:TIGR02168 269 LEELRLEVSELEEEIEELQKELY-------------------ALANEISRLEQQ---KQILR-----ERLANL---ERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 565 ARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRhlarttgrwkdppKKNAMNELQDELMTIRLREAETQAEIREIK 644
Cdd:TIGR02168 319 EELEAQLEELESKLDELAEELAELEEKLEELKEELES-------------LEAELEELEAELEELESRLEELEEQLETLR 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 645 QKMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMA-VRLREADSIAAVAE 723
Cdd:TIGR02168 386 SKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEeLQEELERLEEALEE 465
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 966918821 724 LRQHIAELE--IQKEEGKLQGQLNKSDSNQYIRELKDQIAE 762
Cdd:TIGR02168 466 LREELEEAEqaLDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
402-772 |
1.67e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.49 E-value: 1.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 402 KYNSKK---MKKLEKeyttikTKEMEEQVEIkrLRTEnrlLKQRIETLEKEsaslADRLIQGQVTRAQEAE-ENYLIKRE 477
Cdd:COG1196 169 KYKERKeeaERKLEA------TEENLERLED--ILGE---LERQLEPLERQ----AEKAERYRELKEELKElEAELLLLK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 478 LATIKQQSDEASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNS 557
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELA--------------ELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 558 LpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwqrhlarttgrwkdppkknAMNELQDELMTIRLREAETQ 637
Cdd:COG1196 300 L--EQDIARLEERRRELEERLEELEEELAELEEELEELEE--------------------ELEELEEELEEAEEELEEAE 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 638 AEIREIKQKmmemetqnqinsnhLRRAEQEVVSLQEKvqyLSAQNKGLLTQLSEAKRKQAEIEcKNKEEVMAVRLREADS 717
Cdd:COG1196 358 AELAEAEEA--------------LLEAEAELAEAEEE---LEELAEELLEALRAAAELAAQLE-ELEEAEEALLERLERL 419
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 966918821 718 IAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHEQSTSAQ 772
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
552-772 |
3.47e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 3.47e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 552 EKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEhwQRHLARTTGRWKDPPKKNAMNELQDELMTIRL 631
Cdd:TIGR02168 667 KTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE--ELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 632 RE---AETQAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIecknKEEVM 708
Cdd:TIGR02168 745 LEeriAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL----NEEAA 820
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966918821 709 AVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLNK---SDSNQYIRELKDQIAELNHEQSTSAQ 772
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAaeiEELEELIEELESELEALLNERASLEE 887
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
452-693 |
1.76e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 58.10 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 452 SLADRLIQGQVTRAQEAEENYL--IKRELATIKQQSDEASAKLE--QAENTIRKLQHQQQwhkcssnYNEDFVLQLEKEL 527
Cdd:COG3206 156 ALAEAYLEQNLELRREEARKALefLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAK-------LLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 528 VQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGL-------KELRQQVKDLEEHWQ 600
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYtpnhpdvIALRAQIAALRAQLQ 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 601 RHLARttgrwkdppkknAMNELQDELMTIRLREAETQAEIREIKQKMMEmetqnqinsnhLRRAEQEVVSLQEKVQYLSA 680
Cdd:COG3206 309 QEAQR------------ILASLEAELEALQAREASLQAQLAQLEARLAE-----------LPELEAELRRLEREVEVARE 365
|
250
....*....|...
gi 966918821 681 QNKGLLTQLSEAK 693
Cdd:COG3206 366 LYESLLQRLEEAR 378
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
393-778 |
1.64e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 1.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 393 KLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASL--ADRLIQG--QVTRAQEA 468
Cdd:PTZ00121 1357 DEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKkkADEAKKKaeEKKKADEA 1436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 469 EENYLIKRELATIKQQSDEAsaklEQAENTIRKLQHQQQWHkcssnynedfvlQLEKELVQARLSEaESQCALKEMQDKV 548
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEA----KKAEEAKKKAEEAKKAD------------EAKKKAEEAKKAD-EAKKKAEEAKKKA 1499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 549 LDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKELR--QQVKDLEEHWQRHLARTTGRWKDPPKKNAMNElqDEL 626
Cdd:PTZ00121 1500 DEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAEEAKKAEE--DKN 1577
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 627 MTIRLREAETQAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEE 706
Cdd:PTZ00121 1578 MALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966918821 707 VMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAElnhEQSTSAQVPKRPE 778
Cdd:PTZ00121 1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAE---EKKKAEELKKAEE 1726
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
400-764 |
3.00e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 3.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 400 QVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELA 479
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 480 TIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSsnynedfvlqlekELVQArLSEAESQCALKEMQDKVLDIEKRNNSLP 559
Cdd:PRK02224 423 ELREREAELEATLRTARERVEEAEALLEAGKCP-------------ECGQP-VEGSPHVETIEEDRERVEELEAELEDLE 488
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 560 DEnnIARLQEEL-IAVKLREAEAimGLKELRQQVKDLEEHWQRHLARTTG-RWKDPPKKNAMNELQDELMTIRLREAETQ 637
Cdd:PRK02224 489 EE--VEEVEERLeRAEDLVEAED--RIERLEERREDLEELIAERRETIEEkRERAEELRERAAELEAEAEEKREAAAEAE 564
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 638 AEIREIKQKMMEMETQNQINSNHLRR-------------AEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECK-N 703
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKERIESlerirtllaaiadAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEfD 644
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966918821 704 KEEVMAVRLREADSIAAVAELRQHIAEL-----EIQKEEGKLQGQLnksdsnQYIRELKDQIAELN 764
Cdd:PRK02224 645 EARIEEAREDKERAEEYLEQVEEKLDELreerdDLQAEIGAVENEL------EELEELRERREALE 704
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
405-707 |
7.13e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 7.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 405 SKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQ 484
Cdd:TIGR02169 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSE 759
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 485 SDEASAKLEQAENTIRKLQHQqqwhkcssnynedfVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPDENNi 564
Cdd:TIGR02169 760 LKELEARIEELEEDLHKLEEA--------------LNDLEARLSHSRIPEIQAE--LSKLEEEVSRIEARLREIEQKLN- 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 565 ARLQEELIAVKLREaeaimglkELRQQVKDLEEhwqrhlarttgrwkdppkKNAMNELQDELMTIRLRE-----AETQAE 639
Cdd:TIGR02169 823 RLTLEKEYLEKEIQ--------ELQEQRIDLKE------------------QIKSIEKEIENLNGKKEEleeelEELEAA 876
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966918821 640 IREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEV 707
Cdd:TIGR02169 877 LRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
410-741 |
1.66e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 1.66e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 410 KLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQ--EAEENYLIKR---ELATIKQQ 484
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREltEEHRKELLEEytaELKRIEKE 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 485 SDEASAKLEQAENTIRKLQHQQQWHKCSSNYNE--DFVLQLEKELVQARLSEAESQCA-LKEMQDKVLDIEKRNNSLPDE 561
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELEKKAEeYEKLKEKLIKLKGEIKSLKKE 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 562 -NNIARLQEELIAV--KLREAEAIMG-------------LKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNELQDE 625
Cdd:PRK03918 548 lEKLEELKKKLAELekKLDELEEELAellkeleelgfesVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEE 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 626 LMTIRLREAETQAEIREIKQKMMEMEtqNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEcKNKE 705
Cdd:PRK03918 628 LDKAFEELAETEKRLEELRKELEELE--KKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLK-EELE 704
|
330 340 350
....*....|....*....|....*....|....*....
gi 966918821 706 EVMAVRLREAD---SIAAVAELRQHIAELEIQKEEGKLQ 741
Cdd:PRK03918 705 EREKAKKELEKlekALERVEELREKVKKYKALLKERALS 743
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
566-780 |
4.45e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 4.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 566 RLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHlarttgRWKDPPKKNAMNELQDELMTIRLREAETQAEIREIKQ 645
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEEL------RLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 646 KM-------MEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNK---EEVMAVRLREA 715
Cdd:TIGR02168 310 RLanlerqlEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEeleEQLETLRSKVA 389
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966918821 716 DSIAAVAELRQHIAELEIQKEEgkLQGQLNKSDSNQYIRELKDQIAELNHEQSTSAQVPKRPEGL 780
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLER--LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
424-766 |
6.70e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 6.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 424 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELA-------TIKQQSDEASAKLEQAE 496
Cdd:PRK02224 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGlddadaeAVEARREELEDRDEELR 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 497 NTIRKLQHQQQWHKCSSNYNEDFVLQLE--------------KELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPD-- 560
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEeraeelreeaaeleSELEEAREAVEDRREEIEELEEEIEELRERFGDAPVdl 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 561 ---ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGR-WKDPPKKNAMNELQDELMTIRLREAET 636
Cdd:PRK02224 408 gnaEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQpVEGSPHVETIEEDRERVEELEAELEDL 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 637 QAEIREIKQKMMEMETqnqinsnhLRRAEQEVVSLQEK---VQYLSAQNKGLLTQLSEA---KRKQA---EIECKNKEEV 707
Cdd:PRK02224 488 EEEVEEVEERLERAED--------LVEAEDRIERLEERredLEELIAERRETIEEKRERaeeLRERAaelEAEAEEKREA 559
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966918821 708 MAVRLREADSIA-AVAELRQHIAELEIQKEE-GKLQGQL----NKSDSNQYIRELKDQIAELNHE 766
Cdd:PRK02224 560 AAEAEEEAEEAReEVAELNSKLAELKERIESlERIRTLLaaiaDAEDEIERLREKREALAELNDE 624
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
475-772 |
6.79e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 6.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 475 KRELATIKQQSDEASAKLEQAENTIRKLQHQQ-------------QWHKCSSNYNEDFVLQLEKELVQARLSEAESQCA- 540
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQLERLRRERekaeryqallkekREYEGYELLKEKEALERQKEAIERQLASLEEELEk 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 541 -LKEMQDKVLDIEKRNNSLPD---------ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGrw 610
Cdd:TIGR02169 256 lTEEISELEKRLEEIEQLLEElnkkikdlgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDK-- 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 611 kdppKKNAMNELQDELMTIRLREAETQAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLS 690
Cdd:TIGR02169 334 ----LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 691 eakRKQAEIEcKNKEEVMAVRLREADSIAAVAEL--RQHIAELEIQKEEGKL-QGQLNKSDSNQYIRELKDQIAELNHEQ 767
Cdd:TIGR02169 410 ---RLQEELQ-RLSEELADLNAAIAGIEAKINELeeEKEDKALEIKKQEWKLeQLAADLSKYEQELYDLKEEYDRVEKEL 485
|
....*
gi 966918821 768 STSAQ 772
Cdd:TIGR02169 486 SKLQR 490
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
406-767 |
8.16e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 8.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 406 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKEsASLADRLIQGQVTRAQEAEENYLIKRELATIKQQS 485
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 486 dEASAKLEQAENTIRKLQHQ-QQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENNI 564
Cdd:COG4717 160 -ELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 565 ARLQEEL--IAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTG-----RWKDPPKKNAMNELQDELMTIRLREAETQ 637
Cdd:COG4717 239 AALEERLkeARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGllallFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 638 AEIREIKQK-MMEMETQNQINSNHLRRAEQevvsLQEKVQYLSAQNKGLLTQLSEAKRKQ--AEIECKNKEEVMAVRLRE 714
Cdd:COG4717 319 EELEELLAAlGLPPDLSPEELLELLDRIEE----LQELLREAEELEEELQLEELEQEIAAllAEAGVEDEEELRAALEQA 394
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 966918821 715 ADSIAAVAELRQHIAELE-IQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHEQ 767
Cdd:COG4717 395 EEYQELKEELEELEEQLEeLLGELEELLEALDEEELEEELEELEEELEELEEEL 448
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
424-646 |
8.75e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 8.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 424 EEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEaeenylikrELATIKQQSDEASAKLEQAENTIRKLQ 503
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA---------ELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 504 HQQQwhkcSSNYNEdfVLQLEKELVQARLSEAESqcalkemqdkvldiekrnnslpdENNIARLQEELIAVKLREAEAIM 583
Cdd:COG4913 330 AQIR----GNGGDR--LEQLEREIERLERELEER-----------------------ERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966918821 584 GLKELRQQVKDLEEHWQRHLARTTgrwkdppkkNAMNELQDELMTIRLREAETQAEIREIKQK 646
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEALE---------EALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
359-756 |
8.77e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 49.12 E-value: 8.77e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 359 LLQMNQAELMQLDMEGMLQHFQKVIphqfdgvpdKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEikRLRTENRL 438
Cdd:pfam07888 23 LLVVPRAELLQNRLEECLQERAELL---------QAQEAANRQREKEKERYKRDREQWERQRRELESRVA--ELKEELRQ 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 439 LKQRIETLE---KESASLADRLIQGQVTRAQEAEENYLIKREL----ATIKQQSDEASAKLEQAENTIRKLQHQQQwhkc 511
Cdd:pfam07888 92 SREKHEELEekyKELSASSEELSEEKDALLAQRAAHEARIRELeediKTLTQRVLERETELERMKERAKKAGAQRK---- 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 512 ssnynEDfvlQLEKELVQARL--SEAESQCALKEMQD-KVLDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKEL 588
Cdd:pfam07888 168 -----EE---EAERKQLQAKLqqTEEELRSLSKEFQElRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEEL 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 589 R--QQVKDLEEHWQRHLAR---TTGRWKDppkknamnELQDELMTIRLREAETQAEIREIKQKMMEMETQ-NQINSNHLR 662
Cdd:pfam07888 240 RslQERLNASERKVEGLGEelsSMAAQRD--------RTQAELHQARLQAAQLTLQLADASLALREGRARwAQERETLQQ 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 663 RAEQEvvslQEKVQYLSAQNKGLLTQLSEAK--RKQAEIECKNKEEVMAVRLREADSiaavaELRQHIAELEI-QKEegK 739
Cdd:pfam07888 312 SAEAD----KDRIEKLSAELQRLEERLQEERmeREKLEVELGREKDCNRVQLSESRR-----ELQELKASLRVaQKE--K 380
|
410
....*....|....*..
gi 966918821 740 LQGQLNKSDSNQYIREL 756
Cdd:pfam07888 381 EQLQAEKQELLEYIRQL 397
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
396-594 |
9.96e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 9.96e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 396 QAAYQVKYNSKK--MKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYL 473
Cdd:TIGR02169 324 LAKLEAEIDKLLaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 474 IKRELATIKQQSDEASAKLEQAENTIRKLQHQQqwhkcssnyNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEK 553
Cdd:TIGR02169 404 LKRELDRLQEELQRLSEELADLNAAIAGIEAKI---------NE---LEEEKEDKALEIKKQEWK--LEQLAADLSKYEQ 469
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 966918821 554 RNNSLpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKD 594
Cdd:TIGR02169 470 ELYDL--KEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
440-643 |
1.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.14 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 440 KQRIETLEKESASLADRL--IQGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQwhKCSSNYNE 517
Cdd:COG4913 609 RAKLAALEAELAELEEELaeAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELE--RLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 518 dfVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRnnslpdennIARLQEELIAVKLREAEAIMGLKElrQQVKDLEE 597
Cdd:COG4913 687 --LAALEEQLEELEAELEELEEELDELKGEIGRLEKE---------LEQAEEELDELQDRLEAAEDLARL--ELRALLEE 753
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 966918821 598 HWQRHLARTTGRwkdppkkNAMNELQDELMTIRLREAETQAEIREI 643
Cdd:COG4913 754 RFAAALGDAVER-------ELRENLEERIDALRARLNRAEEELERA 792
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
563-766 |
1.51e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 563 NIARLQEELIavKLREAEAIMglKELRQQVKDLE---EHWQRHLArttgrwkdppKKNAMNELQDELMTIRLREAET--- 636
Cdd:COG4913 226 AADALVEHFD--DLERAHEAL--EDAREQIELLEpirELAERYAA----------ARERLAELEYLRAALRLWFAQRrle 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 637 --QAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEiECKNKEEVMAVRLRE 714
Cdd:COG4913 292 llEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELE-ERERRRARLEALLAA 370
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 966918821 715 -----ADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHE 766
Cdd:COG4913 371 lglplPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
361-735 |
2.02e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.19 E-value: 2.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 361 QMNQAELMQLDMEGMLQHFQKVIphqfdgvpdkliqaayqVKYNSKKMKKLEKE--YTTIKTKEMEEQVE--IKRLRTEN 436
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSIL-----------------VDFEEASGKKIYEHdsMSTMHFRSLGSAISkiLRELDTEI 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 437 RLLKQRI-------ETLEKESASLADRLIQGQVTRAQEaeenyLIKRELATIKQQSDEASAKLEQAeNTIRKlqhqqqwh 509
Cdd:pfam15921 234 SYLKGRIfpvedqlEALKSESQNKIELLLQQHQDRIEQ-----LISEHEVEITGLTEKASSARSQA-NSIQS-------- 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 510 kcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKV--LDIEKRNNSLPDENNIARLQEELIAVKLREAEAIMGLKE 587
Cdd:pfam15921 300 ------------QLEIIQEQARNQNSMYMRQLSDLESTVsqLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQ 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 588 LRQQVKDLEEHWQRHLArttgrwkdppkknamnelqdelmTIRLREAETQAEiREIKQKMMEMETQNQINSNHLRRaeqE 667
Cdd:pfam15921 368 FSQESGNLDDQLQKLLA-----------------------DLHKREKELSLE-KEQNKRLWDRDTGNSITIDHLRR---E 420
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966918821 668 VVSLQEKVQYLSAQNKGLLTQLS-EAKRKQAEIECKNKEevmavrLREADSIAAVAE-----LRQHIAELEIQK 735
Cdd:pfam15921 421 LDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNES------LEKVSSLTAQLEstkemLRKVVEELTAKK 488
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
561-764 |
8.49e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 8.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 561 ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHlarttgrwkdppkKNAMNELQDELMTIRLREAETQAEI 640
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-------------EQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 641 REIKQKMMEMETQNQINSNH----LRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEevmaVRLREAD 716
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQpplaLLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAE----LEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 966918821 717 SIAAVAELRQHIAELEIQKEE-GKLQGQLNK--SDSNQYIRELKDQIAELN 764
Cdd:COG4942 176 LEALLAELEEERAALEALKAErQKLLARLEKelAELAAELAELQQEAEELE 226
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
488-749 |
8.87e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 8.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 488 ASAKLEQAENTIRKLQHQQQwhkcssnynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLpdENNIARL 567
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIA--------------ELEKELAALKKEEKALLKQLAALERRIAALARRIRAL--EQELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 568 QEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRhlarttgrwkdppkknamNELQDELMTIRLREAETQAEIREIKQKM 647
Cdd:COG4942 82 EAELAELEKEIAELRAELEAQKEELAELLRALYR------------------LGRQPPLALLLSPEDFLDAVRRLQYLKY 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 648 MEMETQNQINSnhLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELRQH 727
Cdd:COG4942 144 LAPARREQAEE--LRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
250 260
....*....|....*....|....
gi 966918821 728 IAELE--IQKEEGKLQGQLNKSDS 749
Cdd:COG4942 222 AEELEalIARLEAEAAAAAERTPA 245
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
396-763 |
9.19e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 9.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 396 QAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL--------IQGQVTRAQE 467
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLnlvqtalrQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 468 AEENYLIKRE-----LATIKQQSDEASAKLEQAENTIRKLQHQQqwhkcsSNYNEDFVLQLEKEL-----VQArLSEAES 537
Cdd:PRK04863 356 DLEELEERLEeqnevVEEADEQQEENEARAEAAEEEVDELKSQL------ADYQQALDVQQTRAIqyqqaVQA-LERAKQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 538 QCAL-------------------KEMQDKVLDIEKRNNSLPDenniARLQEELIAVKLREAEAIMGLKELRQQVKDLEEH 598
Cdd:PRK04863 429 LCGLpdltadnaedwleefqakeQEATEELLSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 599 W--QRHLARTTgrwkdPPKKNAMNELQDELMtirlREAETQAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKVQ 676
Cdd:PRK04863 505 LreQRHLAEQL-----QQLRMRLSELEQRLR----QQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 677 YLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMA----VRLRE------ADSiAAVAELRQHIAELEIQKeegklqgQLNK 746
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAqdalARLREqsgeefEDS-QDVTEYMQQLLEREREL-------TVER 647
|
410
....*....|....*..
gi 966918821 747 SDSNQYIRELKDQIAEL 763
Cdd:PRK04863 648 DELAARKQALDEEIERL 664
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
435-746 |
1.11e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.10 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 435 ENRL--LKQRIETLEKESASLA-------------DRLIQGQVTRAQEAEENylikRELATIKQQSDEASAKLEQAENTI 499
Cdd:PRK04863 785 EKRIeqLRAEREELAERYATLSfdvqklqrlhqafSRFIGSHLAVAFEADPE----AELRQLNRRRVELERALADHESQE 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 500 RklQHQQQWHK----CSS-NYNEDFVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPD-ENNIARLQ---EE 570
Cdd:PRK04863 861 Q--QQRSQLEQakegLSAlNRLLPRLNLLADETLADRVEEIREQ--LDEAEEAKRFVQQHGNALAQlEPIVSVLQsdpEQ 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 571 LIAVKLREAEAIMGLKELRQQVKDLEEHWQR--HLArttgrWKDPPKK-NAMNELQDELMTiRLREAETQAeiREIKQKM 647
Cdd:PRK04863 937 FEQLKQDYQQAQQTQRDAKQQAFALTEVVQRraHFS-----YEDAAEMlAKNSDLNEKLRQ-RLEQAEQER--TRAREQL 1008
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 648 MEMETQnqinsnhLRRAEQEVVSLQEkvqylSAQNKglLTQLSEAKRKQAEI---ECKNKEEVMAVRLREADSIAAVAEL 724
Cdd:PRK04863 1009 RQAQAQ-------LAQYNQVLASLKS-----SYDAK--RQMLQELKQELQDLgvpADSGAEERARARRDELHARLSANRS 1074
|
330 340
....*....|....*....|..
gi 966918821 725 RQHIAELEIQKEEGKLQGQLNK 746
Cdd:PRK04863 1075 RRNQLEKQLTFCEAEMDNLTKK 1096
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
421-600 |
1.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 421 KEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL------IQGQVTRAQEAEENYL---------IKRELATIKQQS 485
Cdd:COG4913 275 EYLRAALRLWFAQRRLELLEAELEELRAELARLEAELerlearLDALREELDELEAQIRgnggdrleqLEREIERLEREL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 486 DEASAKLEQAENTIRKLQH------------QQQWHKCSSNYNEDFVlQLEKELVQARLSEAESQCALKEMQDKVLDIEK 553
Cdd:COG4913 355 EERERRRARLEALLAALGLplpasaeefaalRAEAAALLEALEEELE-ALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 966918821 554 RNNSLPDEnnIARLQEELI-AVKLREAEA-IMGlkELrQQVKDLEEHWQ 600
Cdd:COG4913 434 RKSNIPAR--LLALRDALAeALGLDEAELpFVG--EL-IEVRPEEERWR 477
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
421-765 |
2.97e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 421 KEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQE------AEENYLIKRELATIKQQSDEASAKLEQ 494
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEeyllylDYLKLNEERIDLLQELLRDEQEEIESS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 495 AENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSLPDENN----------- 563
Cdd:pfam02463 257 KQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKaekelkkekee 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 564 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNELQDELMTIRLREAETQAEIREI 643
Cdd:pfam02463 337 IEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQ 416
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 644 KQKmmemetqnqinsnHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRlREADSIAAVAE 723
Cdd:pfam02463 417 LED-------------LLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE-DLLKETQLVKL 482
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 966918821 724 LRQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNH 765
Cdd:pfam02463 483 QEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRI 524
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
391-597 |
3.06e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 391 PDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL----IQGQVTRAQ 466
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELaeleKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 467 EAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQD 546
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 966918821 547 KVLDIEKRNNSLpdENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEE 597
Cdd:COG4942 179 LLAELEEERAAL--EALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
409-732 |
3.45e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.16 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 409 KKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEEnYLIKRELATIKQQSDEA 488
Cdd:COG1196 431 AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR-LLLLLEAEADYEGFLEG 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 489 SAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQA--RLSEAESQCALKEMQDK-------VLDIEKRNNSLP 559
Cdd:COG1196 510 VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIvvEDDEVAAAAIEYLKAAKagratflPLDKIRARAALA 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 560 DENNIARLQEE--LIAVKLREAEA----IMGLKELRQQVKDLEEHWQRHLARTTGRWKD---------PPKKNAMNELQD 624
Cdd:COG1196 590 AALARGAIGAAvdLVASDLREADAryyvLGDTLLGRTLVAARLEAALRRAVTLAGRLREvtlegeggsAGGSLTGGSRRE 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 625 ELMTIRLREAETQAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEkvqyLSAQNKGLLTQLSEAKRKQAEIECKNK 704
Cdd:COG1196 670 LLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE----EELEEEALEEQLEAEREELLEELLEEE 745
|
330 340
....*....|....*....|....*...
gi 966918821 705 EEVMAVRLREADSIAAVAELRQHIAELE 732
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELERELERLE 773
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
393-766 |
3.81e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 393 KLIQAAYQVKynsKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKesasLADRLIQGQVTRAQEAEENY 472
Cdd:PRK03918 183 KFIKRTENIE---ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 473 LIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEdFVLQLEKEL--VQARLSEAESQcaLKEMQDKVLD 550
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE-FYEEYLDELreIEKRLSRLEEE--INGIEERIKE 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 551 IEKRNNSLpdeNNIARLQEELiavkLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDppkknamnELQDELMTIR 630
Cdd:PRK03918 333 LEEKEERL---EELKKKLKEL----EKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE--------KLEKELEELE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 631 LREAETQAEIREIKQKMMEMETQnqinsnhlrraeqevvslqekvqylSAQNKGLLTQLSEAKRK----QAEIECKNKEE 706
Cdd:PRK03918 398 KAKEEIEEEISKITARIGELKKE-------------------------IKELKKAIEELKKAKGKcpvcGRELTEEHRKE 452
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966918821 707 VMAVRLREADSIAA-VAELRQHIAELEiqKEEGKLQGQLNKSDSNQYIRELKDQIAELNHE 766
Cdd:PRK03918 453 LLEEYTAELKRIEKeLKEIEEKERKLR--KELRELEKVLKKESELIKLKELAEQLKELEEK 511
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
405-768 |
3.99e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 3.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 405 SKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAE-----ENYL--IKRE 477
Cdd:TIGR04523 217 ESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKkikelEKQLnqLKSE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 478 LATIKQQSDEASAK-----LEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIE 552
Cdd:TIGR04523 297 ISDLNNQKEQDWNKelkseLKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 553 KRNNSLPDE-----NNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTT---GRWKDPPKKNAMNELQD 624
Cdd:TIGR04523 377 KENQSYKQEiknleSQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIknnSEIKDLTNQDSVKELII 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 625 ELMTIRLREAETQAEIREIKQKmmEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNK 704
Cdd:TIGR04523 457 KNLDNTRESLETQLKVLSRSIN--KIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKK 534
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966918821 705 EevmavrlreadsiaavaeLRQHIAELEiqKEEGKLQGQLNKSDSNQYIRELKDQIAELNHEQS 768
Cdd:TIGR04523 535 E------------------KESKISDLE--DELNKDDFELKKENLEKEIDEKNKEIEELKQTQK 578
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
421-727 |
4.09e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 44.04 E-value: 4.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 421 KEMEEQV---EIKRLRTENRLLKQRIETLEKE----SASLADRLIQGQVTRAQEAEENYLIKRELATIKQQSDEASAkle 493
Cdd:pfam10174 459 REREDRErleELESLKKENKDLKEKVSALQPEltekESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSK--- 535
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 494 qAENTIRKLQHQQQWHKCSSNYNeDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKRNNSlpDENNIARLqEELIA 573
Cdd:pfam10174 536 -LENQLKKAHNAEEAVRTNPEIN-DRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKND--KDKKIAEL-ESLTL 610
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 574 VKLREAEAIMGLKELRQQV--KDLEEHWQRHLARTTGRwKDPPKKNAMNELQDELMTIRLREAETQAEIREIKQKMMEME 651
Cdd:pfam10174 611 RQMKEQNKKVANIKHGQQEmkKKGAQLLEEARRREDNL-ADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKD 689
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 652 TQnQINSNHLRRAEQEVVsLQEKVQYLSA------QNKGLLtQLSEAKRKqaeiecKNKEEVMAVRlREADSIaaVAELR 725
Cdd:pfam10174 690 GH-LTNLRAERRKQLEEI-LEMKQEALLAaisekdANIALL-ELSSSKKK------KTQEEVMALK-REKDRL--VHQLK 757
|
..
gi 966918821 726 QH 727
Cdd:pfam10174 758 QQ 759
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
400-772 |
4.35e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 400 QVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRliqGQVTRAQEAEENYLIKR--E 477
Cdd:TIGR00618 436 QQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVV---LARLLELQEEPCPLCGSciH 512
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 478 LATIKQQSDEASA---KLEQAENTIRKLQHQQQ--WHKCSSNYNEDFVLQLEKELVQARLSEAESQ-CALKEMQDKVLDI 551
Cdd:TIGR00618 513 PNPARQDIDNPGPltrRMQRGEQTYAQLETSEEdvYHQLTSERKQRASLKEQMQEIQQSFSILTQCdNRSKEDIPNLQNI 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 552 EKRNNSLPDENNIARLQ-EELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNAMNEL----QDEL 626
Cdd:TIGR00618 593 TVRLQDLTEKLSEAEDMlACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHAlsirVLPK 672
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 627 MTIRLREAETQAEIREIKQKMMEMETQNQINSNhLRRAEQEVVSLQEKVQYLS----------AQNKGLLTQLSEAKRKQ 696
Cdd:TIGR00618 673 ELLASRQLALQKMQSEKEQLTYWKEMLAQCQTL-LRELETHIEEYDREFNEIEnassslgsdlAAREDALNQSLKELMHQ 751
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966918821 697 AEIECKNKEEVMAVR-LREADSIAAVAELRQHIAELEIQKEEGKLQGQLNKSDSNQYIRELKDQIAELNHEQSTSAQ 772
Cdd:TIGR00618 752 ARTVLKARTEAHFNNnEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQ 828
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
439-659 |
4.65e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 439 LKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNED 518
Cdd:COG4717 51 LEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 519 FvlqLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPD-ENNIARLQEELiaVKLREAEAIMGLKELRQQVKDLEE 597
Cdd:COG4717 131 Y---QELEALEAELAELPER--LEELEERLEELRELEEELEElEAELAELQEEL--EELLEQLSLATEEELQDLAEELEE 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966918821 598 HWQRhlarttgrwkdppkknaMNELQDELMTIRLREAETQAEIREIKQKMMEMETQNQINSN 659
Cdd:COG4717 204 LQQR-----------------LAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEA 248
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
564-764 |
5.94e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 564 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKD---PPKKNAMNELQDE----------LMTIR 630
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidvASAEREIAELEAElerldassddLAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 631 LREAETQAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEC--------- 701
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAverelrenl 771
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 702 ----------KNKEEVMAVRLREA-------------DSIAAVAELRQHIAELE----IQKEEgKLQGQLNKSDSN---- 750
Cdd:COG4913 772 eeridalrarLNRAEEELERAMRAfnrewpaetadldADLESLPEYLALLDRLEedglPEYEE-RFKELLNENSIEfvad 850
|
250 260
....*....|....*....|
gi 966918821 751 ------QYIRELKDQIAELN 764
Cdd:COG4913 851 llsklrRAIREIKERIDPLN 870
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
429-766 |
6.24e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.49 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 429 IKRLR--TENRLLKQRIETLEKESASLADRLiqgQVTRAQEAEenylIKRELATIKQQSDEASAKLEQAENTIRKLQHQQ 506
Cdd:PRK02224 178 VERVLsdQRGSLDQLKAQIEEKEEKDLHERL---NGLESELAE----LDEEIERYEEQREQARETRDEADEVLEEHEERR 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 507 QwhkcssnynEDFVLQLEKELVQARLSEAESQC-----ALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKLREAEA 581
Cdd:PRK02224 251 E---------ELETLEAEIEDLRETIAETEREReelaeEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELED 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 582 imGLKELRQQVKDLEEHWQRHlarttgrwkdppkknamnELQDELMTIRLREAETQAEirEIKQKMMEMETQNQINSNHL 661
Cdd:PRK02224 322 --RDEELRDRLEECRVAAQAH------------------NEEAESLREDADDLEERAE--ELREEAAELESELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 662 RRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIEcknkEEVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQ 741
Cdd:PRK02224 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR----EERDELREREAELEATLRTARERVEEAEALLEAGKCP 455
|
330 340
....*....|....*....|....*...
gi 966918821 742 --GQ-LNKSDSNQYIRELKDQIAELNHE 766
Cdd:PRK02224 456 ecGQpVEGSPHVETIEEDRERVEELEAE 483
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
412-506 |
8.76e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 8.76e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 412 EKEYTTIKTKEMEEQV-----EIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEA----------EENYLIKR 476
Cdd:COG2433 400 EKEHEERELTEEEEEIrrleeQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIrkdreisrldREIERLER 479
|
90 100 110
....*....|....*....|....*....|
gi 966918821 477 ELATIKQQSDEASAKLEQAEnTIRKLQHQQ 506
Cdd:COG2433 480 ELEEERERIEELKRKLERLK-ELWKLEHSG 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
396-625 |
9.09e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.74 E-value: 9.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 396 QAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQgqvtraqeaeenylIK 475
Cdd:TIGR02168 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIES--------------LA 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 476 RELATIKQQSDEASAKLEQAENtiRKLQHQQQWHKCSSNYNEdfvlqLEKELVQARLSEAESQCALKEMQDKVLDIEKRN 555
Cdd:TIGR02168 859 AEIEELEELIEELESELEALLN--ERASLEEALALLRSELEE-----LSEELRELESKRSELRRELEELREKLAQLELRL 931
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966918821 556 NSLpdENNIARLQEELIAVKLREAEAIMGLKELrqqVKDLEEHWQRHLARTTGRWKD--PPKKNAMNELQDE 625
Cdd:TIGR02168 932 EGL--EVRIDNLQERLSEEYSLTLEEAEALENK---IEDDEEEARRRLKRLENKIKElgPVNLAAIEEYEEL 998
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
407-737 |
1.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 407 KMKKLEKEYTTIKtkemEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENY-LIKRELATIKQQS 485
Cdd:COG4717 147 RLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLaELEEELEEAQEEL 222
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 486 DEASAKLEQAENTIRKLQHQQQWHKCSSNYN-----------------------------------EDFVLQLEKELVQA 530
Cdd:COG4717 223 EELEEELEQLENELEAAALEERLKEARLLLLiaaallallglggsllsliltiagvlflvlgllalLFLLLAREKASLGK 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 531 RLSEAESQCALKEMQDKVLDIEKRNNSLPDENNIARLQEELIAVKlreaeaimGLKELRQQVKDLEEHWQRHLARTTgrw 610
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE--------ELQELLREAEELEEELQLEELEQE--- 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 611 kdppKKNAMNELQDELMTIRLREAETQAEIREIKQKMMEMETQ--NQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQ 688
Cdd:COG4717 372 ----IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQleELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 966918821 689 LSEAKRKQAEIEcknkeevmaVRLREADSIAAVAELRQHIAELEIQKEE 737
Cdd:COG4717 448 LEELREELAELE---------AELEQLEEDGELAELLQELEELKAELRE 487
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
428-597 |
1.34e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 428 EIKRLRTENRLLKQRIETLEKESASLADRLIQgqvtraqeaeenylIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQ 507
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARLEA--------------AKTELEDLEKEIKRLELEIEEVEARIKKYEEQLG 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 508 WHKCSSNYNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKLREAEAImglKE 587
Cdd:COG1579 84 NVRNNKEYEA---LQKEIESLKRRISDLEDE--ILELMERIEELEEELAEL--EAELAELEAELEEKKAELDEEL---AE 153
|
170
....*....|
gi 966918821 588 LRQQVKDLEE 597
Cdd:COG1579 154 LEAELEELEA 163
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
399-737 |
1.44e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 399 YQVKYNSKKMKKLE------------KEYTTIKTKEMEEQVEIKRLRTEN----RLLKQRIETLEKESASLADRLIQGQV 462
Cdd:pfam17380 256 YTVRYNGQTMTENEflnqllhivqhqKAVSERQQQEKFEKMEQERLRQEKeekaREVERRRKLEEAEKARQAEMDRQAAI 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 463 TRAQE--AEENyliKRELATIKQQsdEASAKLEQaentIRklqhQQQWHKCSSNYNEDFVLQLEK----ELVQARLSEAE 536
Cdd:pfam17380 336 YAEQErmAMER---ERELERIRQE--ERKRELER----IR----QEEIAMEISRMRELERLQMERqqknERVRQELEAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 537 SQCALKEMQDKVLDIEKRnnslpDENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHWQRHLARTTGRWKDPPKK 616
Cdd:pfam17380 403 KVKILEEERQRKIQQQKV-----EMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 617 NAMNELQDELMTIRLREAETQAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKvqylsaqnkgllTQLSEAKRKQ 696
Cdd:pfam17380 478 ELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERR------------REAEEERRKQ 545
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 966918821 697 AEIECKNK-EEVMAVRLREADSIAAVA---ELRQHIAELEIQKEE 737
Cdd:pfam17380 546 QEMEERRRiQEQMRKATEERSRLEAMErerEMMRQIVESEKARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
585-772 |
1.57e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 585 LKELRQQVKDLEEHWQRHlarttgrwkdppkknamNELQDELMTIRLREAETQAEIREIKQKMMEMETQNQINSNH--LR 662
Cdd:COG4717 73 LKELEEELKEAEEKEEEY-----------------AELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYqeLE 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 663 RAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEevmAVRLREADSIAAVAELRQHIAELE-IQKEEGKLQ 741
Cdd:COG4717 136 ALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEE---LEELLEQLSLATEEELQDLAEELEeLQQRLAELE 212
|
170 180 190
....*....|....*....|....*....|.
gi 966918821 742 GQLNKSDsnQYIRELKDQIAELNHEQSTSAQ 772
Cdd:COG4717 213 EELEEAQ--EELEELEEELEQLENELEAAAL 241
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
564-769 |
1.58e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 564 IARLQEELIAVKLREAEAIMGLKELRQQVKDLEehwqrhlarttgrwKDPPKKNAMNELQDElmtirLREAETQAEIREI 643
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLR--------------REREKAERYQALLKE-----KREYEGYELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 644 KqkmmEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAKRKqaeIECKNKEEVMAVRLREADSIAAVAE 723
Cdd:TIGR02169 233 E----ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK---IKDLGEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 966918821 724 LRQHIAELEIQKEEgkLQGQLNKSDSNqyIRELKDQIAELNHEQST 769
Cdd:TIGR02169 306 LERSIAEKERELED--AEERLAKLEAE--IDKLLAEIEELEREIEE 347
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
391-538 |
2.13e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 2.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 391 PDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRLIQGQvtRAQEAEE 470
Cdd:COG4913 684 SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEER--FAAALGD 761
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966918821 471 NYLiKRELATIKQQSDEASAKLEQAENTIRKL--QHQQQWHKCSSN------YNEDFVLQLEKeLVQARLSEAESQ 538
Cdd:COG4913 762 AVE-RELRENLEERIDALRARLNRAEEELERAmrAFNREWPAETADldadleSLPEYLALLDR-LEEDGLPEYEER 835
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
472-646 |
3.97e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 3.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 472 YLIKRELATIKQQSDEASAK--LEQAE---NTIRK---LQHQQQWHKCSSnynedfvlQLEKELVQAR--LSEAESQCAL 541
Cdd:PRK12704 22 YFVRKKIAEAKIKEAEEEAKriLEEAKkeaEAIKKealLEAKEEIHKLRN--------EFEKELRERRneLQKLEKRLLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 542 KEMQ--DKVLDIEKRNNSLPD-ENNIARLQEEliavklreaeaimgLKELRQQVKDLEEHWQRHLARTTGRWKDPPKKNA 618
Cdd:PRK12704 94 KEENldRKLELLEKREEELEKkEKELEQKQQE--------------LEKKEEELEELIEEQLQELERISGLTAEEAKEIL 159
|
170 180
....*....|....*....|....*...
gi 966918821 619 MNELQDELmtirlrEAETQAEIREIKQK 646
Cdd:PRK12704 160 LEKVEEEA------RHEAAVLIKEIEEE 181
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
419-726 |
4.20e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 40.58 E-value: 4.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 419 KTKEMEEQVE-IKRLRTENRLLKQRIETLEkESASLADRLI-----QGQVTRAQEAEENYLIKRELATIKQQSDEASAKL 492
Cdd:pfam10174 413 KDKQLAGLKErVKSLQTDSSNTDTALTTLE-EALSEKERIIerlkeQREREDRERLEELESLKKENKDLKEKVSALQPEL 491
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 493 EQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQAR-------------LSEAESQCALKEMQDKVLDIEKRNNSLP 559
Cdd:pfam10174 492 TEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKeecsklenqlkkaHNAEEAVRTNPEINDRIRLLEQEVARYK 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 560 DENNIARLQEELIAVKLREAEAIMGLKElrQQVKDLEEHWQRHLarttgrwKDPPKKNAMNELQDELMtiRLREAETQAE 639
Cdd:pfam10174 572 EESGKAQAEVERLLGILREVENEKNDKD--KKIAELESLTLRQM-------KEQNKKVANIKHGQQEM--KKKGAQLLEE 640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 640 IREIKQKMMEMETQNQINS--NHLRRAEQEVVSLQEKV---QYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLRE 714
Cdd:pfam10174 641 ARRREDNLADNSQQLQLEElmGALEKTRQELDATKARLsstQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAAISE 720
|
330
....*....|..
gi 966918821 715 ADSIAAVAELRQ 726
Cdd:pfam10174 721 KDANIALLELSS 732
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
406-764 |
5.18e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 5.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 406 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTenrlLKQRIETLEKESASLADRLIQGQVTRAQEAEEnylIKRELATIKQQS 485
Cdd:PRK01156 346 SRYDDLNNQILELEGYEMDYNSYLKSIES----LKKKIEEYSKNIERMSAFISEILKIQEIDPDA---IKKELNEINVKL 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 486 DEASAKLEQAENTIRKL-QHQQQWHK-------------CSSNYNEDFVLQLEKELVQ--ARLSEA--ESQCALKEMQDK 547
Cdd:PRK01156 419 QDISSKVSSLNQRIRALrENLDELSRnmemlngqsvcpvCGTTLGEEKSNHIINHYNEkkSRLEEKirEIEIEVKDIDEK 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 548 VLDIEKR---------NNSLPDENNIARLQEELIAVKLREAEaimgLKELRQQVKDLEEHWQR-HLARTTGRWKDPPKKN 617
Cdd:PRK01156 499 IVDLKKRkeyleseeiNKSINEYNKIESARADLEDIKIKINE----LKDKHDKYEEIKNRYKSlKLEDLDSKRTSWLNAL 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 618 AMNELQDeLMTIRLREAETQAEIREIKQKMMEMETQ----NQINSNHLRRAEQEVVSLQEKVqylsaqnkglltQLSEAK 693
Cdd:PRK01156 575 AVISLID-IETNRSRSNEIKKQLNDLESRLQEIEIGfpddKSYIDKSIREIENEANNLNNKY------------NEIQEN 641
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 694 RKQAEiECKNKEEVMAVRLREADSIA-AVAELRQHIaeLEIQKEEGKLQGQLNKSDSNQY------------IRELKDQI 760
Cdd:PRK01156 642 KILIE-KLRGKIDNYKKQIAEIDSIIpDLKEITSRI--NDIEDNLKKSRKALDDAKANRArlestieilrtrINELSDRI 718
|
....
gi 966918821 761 AELN 764
Cdd:PRK01156 719 NDIN 722
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
616-773 |
5.19e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 5.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 616 KNAMNELQDELMTIRLREAETQAEIREIKQK--MMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLSEAK 693
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 694 RKQAEIecKNKEEVMAVRLREADSIAAVAELRQH--------------IAELE--IQKEEGKLQGQL--NKSDSNQYIRE 755
Cdd:COG3206 254 DALPEL--LQSPVIQQLRAQLAELEAELAELSARytpnhpdvialraqIAALRaqLQQEAQRILASLeaELEALQAREAS 331
|
170
....*....|....*...
gi 966918821 756 LKDQIAELNHEQSTSAQV 773
Cdd:COG3206 332 LQAQLAQLEARLAELPEL 349
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
360-785 |
6.50e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 6.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 360 LQMNQAELMQLDMEGMLQHFQKVIPHQfdgvpDKLIQAAYQVKYNSKKMKKLEKEYTTIKT---KEMEEQVEIKRLRTEN 436
Cdd:TIGR00618 435 LQQRYAELCAAAITCTAQCEKLEKIHL-----QESAQSLKEREQQLQTKEQIHLQETRKKAvvlARLLELQEEPCPLCGS 509
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 437 RLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCS---- 512
Cdd:TIGR00618 510 CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDipnl 589
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 513 SNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKR-------NNSLPDENNIARLQEELIAVKLREA-EAIMG 584
Cdd:TIGR00618 590 QNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRlhlqqcsQELALKLTALHALQLTLTQERVREHaLSIRV 669
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 585 LKELRQQVKDLEEHWQRHLARTTGRWKD--PPKKNAMNELQDELMTIRLREAETQAEIREIKQKMMEMETQNQINSNHLR 662
Cdd:TIGR00618 670 LPKELLASRQLALQKMQSEKEQLTYWKEmlAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELM 749
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 663 RAEQEVVSLQEKVQYLSAQNKGLLTQLSeAKRKQAEIECKNKEEVMAVRLREADSIAAvaELRQHIAELEIQKEEGKLQG 742
Cdd:TIGR00618 750 HQARTVLKARTEAHFNNNEEVTAALQTG-AELSHLAAEIQFFNRLREEDTHLLKTLEA--EIGQEIPSDEDILNLQCETL 826
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 966918821 743 QLNKSDSNQYIRELKDQIAELNHEQSTSAQVPKRPEGLLRPTA 785
Cdd:TIGR00618 827 VQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
406-767 |
6.74e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 6.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 406 KKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLLKQRIETLEKESASLADRL--IQGQV--TRAQEAEENYLI------- 474
Cdd:TIGR04523 131 KQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKlnIQKNIdkIKNKLLKLELLLsnlkkki 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 475 -------------KRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQA--RLSEAESQC 539
Cdd:TIGR04523 211 qknkslesqiselKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNnkKIKELEKQL 290
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 540 ALKEMQDKVLDIEKRNNSLPD-ENNIARLQEELIAVKLREAEAIMGLKELRQQVKDLEEHwqrhlaRTTGRWKDPPKKNA 618
Cdd:TIGR04523 291 NQLKSEISDLNNQKEQDWNKElKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKE------LTNSESENSEKQRE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 619 MNELQDELMTIRlREAET--------QAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQEKVQYLSAQNKGLLTQLS 690
Cdd:TIGR04523 365 LEEKQNEIEKLK-KENQSykqeiknlESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIK 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 691 EAKRKQAEIECKNKEEVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQL------NKSDSNQYIRELKDQIAELN 764
Cdd:TIGR04523 444 DLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKElkklneEKKELEEKVKDLTKKISSLK 523
|
...
gi 966918821 765 HEQ 767
Cdd:TIGR04523 524 EKI 526
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
385-772 |
6.85e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.00 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 385 HQFDGVPDKLIQAAYQVKYNSKKMKKLEKEYTTIKTKEMEEQVEIKRLRTENRLL-------KQRIETLEKESASLADRL 457
Cdd:TIGR04523 33 TEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLndklkknKDKINKLNSDLSKINSEI 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 458 -IQGQVTRAQEAEENYL------IKRELATIKQQSDEASAKLEQAENTIRKLQHQQQWHKCSSNYNEDFVLQLEKELVQA 530
Cdd:TIGR04523 113 kNDKEQKNKLEVELNKLekqkkeNKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKI 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 531 RLSEAESQCAL----------KEMQDKVLDIEKRNNSLpdENNIARLQEELIAVKL---REAEAIMGLKELRQQVKDLEE 597
Cdd:TIGR04523 193 KNKLLKLELLLsnlkkkiqknKSLESQISELKKQNNQL--KDNIEKKQQEINEKTTeisNTQTQLNQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 598 HWQRHLARTTGRWKDppKKNAMNELQDELMTIRLREA-----ETQAEIREIKQKMMEMETQNQINSNHLRRAEQEVVSLQ 672
Cdd:TIGR04523 271 EKQKELEQNNKKIKE--LEKQLNQLKSEISDLNNQKEqdwnkELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 673 EKVQYLSAQNKGLLTQLSEakrKQAEIECKNKE---------------EVMAVRLREADSIAavAELRQHIAELEIQKEE 737
Cdd:TIGR04523 349 KELTNSESENSEKQRELEE---KQNEIEKLKKEnqsykqeiknlesqiNDLESKIQNQEKLN--QQKDEQIKKLQQEKEL 423
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 966918821 738 GKLQGQLNKS---DSNQYIRELKDQIAEL-----NHEQSTSAQ 772
Cdd:TIGR04523 424 LEKEIERLKEtiiKNNSEIKDLTNQDSVKeliikNLDNTRESL 466
|
|
| DUF1129 |
pfam06570 |
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial ... |
513-553 |
6.96e-03 |
|
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial proteins of unknown function.
Pssm-ID: 429008 Cd Length: 200 Bit Score: 38.41 E-value: 6.96e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 966918821 513 SNYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEK 553
Cdd:pfam06570 3 TKKNQDYIFRLTKQLIKDGKSDEEIKEILDEMLPEILEGQK 43
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
404-764 |
7.19e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.10 E-value: 7.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 404 NSKKMKKLEKEYTTIKTKEMEeqveikrLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELatikq 483
Cdd:pfam15921 312 NSMYMRQLSDLESTVSQLRSE-------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL----- 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 484 QSDEASAKLEQAENTIRKLQHQQQWHKCSSN-------YNEDFVLQLEKELVQARLSEAESQCAlKEMQDKVLDIEKRNN 556
Cdd:pfam15921 380 QKLLADLHKREKELSLEKEQNKRLWDRDTGNsitidhlRRELDDRNMEVQRLEALLKAMKSECQ-GQMERQMAAIQGKNE 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 557 SLpdeNNIARLQEELIAVK--LREAeaimgLKELRQQVKDLEEHwQRHLARTTGRWKDppKKNAMNELQDELMTIRLREA 634
Cdd:pfam15921 459 SL---EKVSSLTAQLESTKemLRKV-----VEELTAKKMTLESS-ERTVSDLTASLQE--KERAIEATNAEITKLRSRVD 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 635 ETQAEIREIKQKmmemetqnqinSNHLRRAEQEVVSL------QEKVQYLSAQNKGLLTQLS----------EAKRKQAE 698
Cdd:pfam15921 528 LKLQELQHLKNE-----------GDHLRNVQTECEALklqmaeKDKVIEILRQQIENMTQLVgqhgrtagamQVEKAQLE 596
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966918821 699 IECKNKE-EVMAVRLREADSIAAVAELRQHIAELEIQKEEGKLQGQLN-------KSDSNQYIRELKDQIAELN 764
Cdd:pfam15921 597 KEINDRRlELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERlravkdiKQERDQLLNEVKTSRNELN 670
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
490-667 |
9.61e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 9.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 490 AKLEQAENTIRKLQHQQQwhkcssNYNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKRNNSLPDENNIARLQE 569
Cdd:COG4717 71 KELKELEEELKEAEEKEE------EYAE---LQEELEELEEELEELEAE--LEELREELEKLEKLLQLLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 570 ELIAVKLREAEAIMGLKELRQQVKDLE------EHWQRHLARTTGRWkDPPKKNAMNELQDELMTIRLREAETQAEIREI 643
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEEELEeleaelAELQEELEELLEQL-SLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180
....*....|....*....|....
gi 966918821 644 KQKMMEMETQNQINSNHLRRAEQE 667
Cdd:COG4717 219 QEELEELEEELEQLENELEAAALE 242
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
432-729 |
9.98e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 38.75 E-value: 9.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 432 LRTENRLLKQRIETLEkesasladrliqgQVTRAQEAEENYLIKRELATIKQQSDEASAKLEQAENTIRKLQHQQqwhkc 511
Cdd:pfam00038 23 LEQQNKLLETKISELR-------------QKKGAEPSRLYSLYEKEIEDLRRQLDTLTVERARLQLELDNLRLAA----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 512 ssnynEDFVLQLEKELVQARLSEAESQCALKEMQDKVLdiekrnNSLPDENNIARLQEELIAVK-LREAEaimgLKELRQ 590
Cdd:pfam00038 85 -----EDFRQKYEDELNLRTSAENDLVGLRKDLDEATL------ARVDLEAKIESLKEELAFLKkNHEEE----VRELQA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966918821 591 QVKDLeehwQRHLARTTGRWKDPPKknAMNELQ---DELMTIRLREAETQaeireIKQKMMEMETQNQINSNHLRRAEQE 667
Cdd:pfam00038 150 QVSDT----QVNVEMDAARKLDLTS--ALAEIRaqyEEIAAKNREEAEEW-----YQSKLEELQQAAARNGDALRSAKEE 218
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966918821 668 VVSLQEKVQYLSAQNKGLLTQLSEAKRKQAEIECKNKEEVMAVRLREADSIAAVAELRQHIA 729
Cdd:pfam00038 219 ITELRRTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQELISELEAELQETRQEMA 280
|
|
| |
