|
Name |
Accession |
Description |
Interval |
E-value |
| CARMIL_C |
pfam16000 |
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich ... |
778-1066 |
2.16e-85 |
|
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich repeat-containing proteins in the CARMIL family. In leucine-rich repeat-containing protein 16A (LRRC16A) it includes the region responsible for interaction with F-actin-capping protein subunit alpha-2 (CAPZA2).
:
Pssm-ID: 464966 [Multi-domain] Cd Length: 299 Bit Score: 280.89 E-value: 2.16e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 778 TQELCPVAMRVAEGHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVDEILQELYHSHKSLA 857
Cdd:pfam16000 1 AESLCPHVMQKAGVRQDLEKALSEKMTLPEEFVKSTLLEQAGVDIFNKLSEVKLSVASFLSDRIVDEVLEALSRSHHKLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 858 RHLTQL-RTLSDPPGCP-GQGQDLSSRGRGRNHDHEETTDDELGTNIDTMAIKKQKR-CRKIRPVSAFISGSPQDMESQL 934
Cdd:pfam16000 81 RHLSQRgRTLLEPESLPdGDRPESSPLGPGKRHEGEIERLEELETPMATLKSKRKSIhSRKLRPVSVAFSVSELDLDKAP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 935 GNLGI--------PPGWFSGLGGSQPTATGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSMPAPGTRQENGMA 1006
Cdd:pfam16000 161 EEVPIhvedassgPPLPSSSPSEPELSASESLDSLSELPTEGQKLQHLTKGRPKRNKTRAPTRPPGKVGPAQDGEQNGLS 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966954247 1007 TRLDEGLEDFFSRRVMEEssSYPRTLRTVRPGLSE-PPLPPLQKKRRRGLFHFRRPRSFKG 1066
Cdd:pfam16000 241 GRVDEGLEDFFSKKVIKL--STPTSPTSEPSSSSLfPDSPKKRKKRKSGFFNFIKPRSSKG 299
|
|
| Carm_PH |
pfam17888 |
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain ... |
30-118 |
4.54e-34 |
|
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain connected to a 16-leucine-rich repeat domain found in CARMIL (CP Arp2/3 complex myosin-I linker) proteins. The PH domain is interconnected with an N-terminal helix (N-helix), residues 10-20 and a C-terminal linker (Linker), residues 129-147 in Swiss:Q6EDY6. Structural and functional studies indicate that the PH domain involved in direct binding to the PM (plasma membrane) and a HD (helical domain) responsible for antiparallel dimerization and enhancement of CARMIL's membrane-binding activity. Furthermore, it appears that CARMIL's PH domain mediates non-specific binding to the membrane, in contrast to other PH domains that bind polyphosphorylated phosphatidylinositides, which are thought to function as signalling lipids.
:
Pssm-ID: 436119 Cd Length: 94 Bit Score: 126.24 E-value: 4.54e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 30 RVKLETKPKKFEDRVLALTSWRLHLFPLKVPAKVESSFNVLEIRAFNTLSQNQILVETERGMVSMRLPSAESVDQVTRHV 109
Cdd:pfam17888 6 SVKLETKGDKVEDRILVLTPWRLFLLSAKVPTKVERTFHFLEIRAINSRNPNQVIVETDKSNYSLKLASEEDVDHVVGHI 85
|
....*....
gi 966954247 110 SSALSKVCP 118
Cdd:pfam17888 86 LTALKKIFP 94
|
|
| RNA1 super family |
cl34950 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
274-657 |
3.24e-16 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
The actual alignment was detected with superfamily member COG5238:
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 82.92 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 274 VLHALTLSHNPIEDKGFFSLSQQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPA---FASSLRYLDLSKNPGLLAT 350
Cdd:COG5238 88 QLLVVDWEGAEEVSPVALAETATAVATPPPDLRRIMAKTLEDSLILYLALPRRINLIQvlkDPLGGNAVHLLGLAARLGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 351 DEANALYSFLaQPNALVHLDLSGT---DCVIDLLLGALLHGccSHLTYLNLARNSCshrkGRESPPAFKQFFSSAYTLSH 427
Cdd:COG5238 168 LAAISMAKAL-QNNSVETVYLGCNqigDEGIEELAEALTQN--TTVTTLWLKRNPI----GDEGAEILAEALKGNKSLTT 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 428 VNLSATKLPLEALRALLQGLSLNSHLSdlHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGF-DSDLLTLVPALGK 506
Cdd:COG5238 241 LDLSNNQIGDEGVIALAEALKNNTTVE--TLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIgDEGAIALAEGLQG 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 507 NKSLKHLFLGKNfNVKAKTLEeilhklvqliqeedcslqslsvadsrlklrtsILINALGSNTCLAKVDLSGNGMEDIGA 586
Cdd:COG5238 319 NKTLHTLNLAYN-GIGAQGAI--------------------------------ALAKALQENTTLHSLDLSDNQIGDEGA 365
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966954247 587 KMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNhTLRFMSFPVSDISQAYRSapeRTEDVWQKIQW 657
Cdd:COG5238 366 IALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQ---RLEQLLERIKS 432
|
|
| PRK12323 super family |
cl46901 |
DNA polymerase III subunit gamma/tau; |
1185-1368 |
9.10e-05 |
|
DNA polymerase III subunit gamma/tau;
The actual alignment was detected with superfamily member PRK12323:
Pssm-ID: 481241 [Multi-domain] Cd Length: 700 Bit Score: 46.79 E-value: 9.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1185 AWQKRRSSDDAGPGSWKPPPPPQSTkPSFSAMRRAEATwHIAEESAPNHSCQSPSPASQDGEEEKEGTLFPERTLPARNA 1264
Cdd:PRK12323 362 AFRPGQSGGGAGPATAAAAPVAQPA-PAAAAPAAAAPA-PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQA 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1265 KLQDPALAPRP-PKPVAVPRGRWPPQEPGVREEAEAGDATPGGNKPQlRLGSQQDQEEPEVQGLPDPGRRTAPLKP-KRT 1342
Cdd:PRK12323 440 SARGPGGAPAPaPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA-AAPAPADDDPPPWEELPPEFASPAPAQPdAAP 518
|
170 180
....*....|....*....|....*.
gi 966954247 1343 RRAQSCDKLEPDRRRPPDPTGTSEPG 1368
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPA 544
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CARMIL_C |
pfam16000 |
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich ... |
778-1066 |
2.16e-85 |
|
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich repeat-containing proteins in the CARMIL family. In leucine-rich repeat-containing protein 16A (LRRC16A) it includes the region responsible for interaction with F-actin-capping protein subunit alpha-2 (CAPZA2).
Pssm-ID: 464966 [Multi-domain] Cd Length: 299 Bit Score: 280.89 E-value: 2.16e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 778 TQELCPVAMRVAEGHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVDEILQELYHSHKSLA 857
Cdd:pfam16000 1 AESLCPHVMQKAGVRQDLEKALSEKMTLPEEFVKSTLLEQAGVDIFNKLSEVKLSVASFLSDRIVDEVLEALSRSHHKLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 858 RHLTQL-RTLSDPPGCP-GQGQDLSSRGRGRNHDHEETTDDELGTNIDTMAIKKQKR-CRKIRPVSAFISGSPQDMESQL 934
Cdd:pfam16000 81 RHLSQRgRTLLEPESLPdGDRPESSPLGPGKRHEGEIERLEELETPMATLKSKRKSIhSRKLRPVSVAFSVSELDLDKAP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 935 GNLGI--------PPGWFSGLGGSQPTATGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSMPAPGTRQENGMA 1006
Cdd:pfam16000 161 EEVPIhvedassgPPLPSSSPSEPELSASESLDSLSELPTEGQKLQHLTKGRPKRNKTRAPTRPPGKVGPAQDGEQNGLS 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966954247 1007 TRLDEGLEDFFSRRVMEEssSYPRTLRTVRPGLSE-PPLPPLQKKRRRGLFHFRRPRSFKG 1066
Cdd:pfam16000 241 GRVDEGLEDFFSKKVIKL--STPTSPTSEPSSSSLfPDSPKKRKKRKSGFFNFIKPRSSKG 299
|
|
| Carm_PH |
pfam17888 |
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain ... |
30-118 |
4.54e-34 |
|
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain connected to a 16-leucine-rich repeat domain found in CARMIL (CP Arp2/3 complex myosin-I linker) proteins. The PH domain is interconnected with an N-terminal helix (N-helix), residues 10-20 and a C-terminal linker (Linker), residues 129-147 in Swiss:Q6EDY6. Structural and functional studies indicate that the PH domain involved in direct binding to the PM (plasma membrane) and a HD (helical domain) responsible for antiparallel dimerization and enhancement of CARMIL's membrane-binding activity. Furthermore, it appears that CARMIL's PH domain mediates non-specific binding to the membrane, in contrast to other PH domains that bind polyphosphorylated phosphatidylinositides, which are thought to function as signalling lipids.
Pssm-ID: 436119 Cd Length: 94 Bit Score: 126.24 E-value: 4.54e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 30 RVKLETKPKKFEDRVLALTSWRLHLFPLKVPAKVESSFNVLEIRAFNTLSQNQILVETERGMVSMRLPSAESVDQVTRHV 109
Cdd:pfam17888 6 SVKLETKGDKVEDRILVLTPWRLFLLSAKVPTKVERTFHFLEIRAINSRNPNQVIVETDKSNYSLKLASEEDVDHVVGHI 85
|
....*....
gi 966954247 110 SSALSKVCP 118
Cdd:pfam17888 86 LTALKKIFP 94
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
274-657 |
3.24e-16 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 82.92 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 274 VLHALTLSHNPIEDKGFFSLSQQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPA---FASSLRYLDLSKNPGLLAT 350
Cdd:COG5238 88 QLLVVDWEGAEEVSPVALAETATAVATPPPDLRRIMAKTLEDSLILYLALPRRINLIQvlkDPLGGNAVHLLGLAARLGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 351 DEANALYSFLaQPNALVHLDLSGT---DCVIDLLLGALLHGccSHLTYLNLARNSCshrkGRESPPAFKQFFSSAYTLSH 427
Cdd:COG5238 168 LAAISMAKAL-QNNSVETVYLGCNqigDEGIEELAEALTQN--TTVTTLWLKRNPI----GDEGAEILAEALKGNKSLTT 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 428 VNLSATKLPLEALRALLQGLSLNSHLSdlHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGF-DSDLLTLVPALGK 506
Cdd:COG5238 241 LDLSNNQIGDEGVIALAEALKNNTTVE--TLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIgDEGAIALAEGLQG 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 507 NKSLKHLFLGKNfNVKAKTLEeilhklvqliqeedcslqslsvadsrlklrtsILINALGSNTCLAKVDLSGNGMEDIGA 586
Cdd:COG5238 319 NKTLHTLNLAYN-GIGAQGAI--------------------------------ALAKALQENTTLHSLDLSDNQIGDEGA 365
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966954247 587 KMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNhTLRFMSFPVSDISQAYRSapeRTEDVWQKIQW 657
Cdd:COG5238 366 IALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQ---RLEQLLERIKS 432
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
339-600 |
1.03e-12 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 70.85 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 339 LDLSKNpgLLATDEANALYSFLAQPNALVHLDLS-----GTDCVIDLLLGALLHGCCshLTYLNLARNSCshrkGRESPP 413
Cdd:cd00116 28 LRLEGN--TLGEEAAKALASALRPQPSLKELCLSlnetgRIPRGLQSLLQGLTKGCG--LQELDLSDNAL----GPDGCG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 414 AFKQFFSSaYTLSHVNLSATKLPLEALRALLQGL-SLNSHLSDLhlDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNG 492
Cdd:cd00116 100 VLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLkDLPPALEKL--VLGRNRLEGASCEALAKALRANRDLKELNLANNG 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 493 F-DSDLLTLVPALGKNKSLKHLFLGKNF--NVKAKTLEEILHKLVQL--IQEEDCSLQSLSVADsrlklrtsiLINALGS 567
Cdd:cd00116 177 IgDAGIRALAEGLKANCNLEVLDLNNNGltDEGASALAETLASLKSLevLNLGDNNLTDAGAAA---------LASALLS 247
|
250 260 270
....*....|....*....|....*....|....
gi 966954247 568 -NTCLAKVDLSGNGMEDIGAKMLSKALQINSSLR 600
Cdd:cd00116 248 pNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1185-1368 |
9.10e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.79 E-value: 9.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1185 AWQKRRSSDDAGPGSWKPPPPPQSTkPSFSAMRRAEATwHIAEESAPNHSCQSPSPASQDGEEEKEGTLFPERTLPARNA 1264
Cdd:PRK12323 362 AFRPGQSGGGAGPATAAAAPVAQPA-PAAAAPAAAAPA-PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQA 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1265 KLQDPALAPRP-PKPVAVPRGRWPPQEPGVREEAEAGDATPGGNKPQlRLGSQQDQEEPEVQGLPDPGRRTAPLKP-KRT 1342
Cdd:PRK12323 440 SARGPGGAPAPaPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA-AAPAPADDDPPPWEELPPEFASPAPAQPdAAP 518
|
170 180
....*....|....*....|....*.
gi 966954247 1343 RRAQSCDKLEPDRRRPPDPTGTSEPG 1368
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPA 544
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CARMIL_C |
pfam16000 |
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich ... |
778-1066 |
2.16e-85 |
|
CARMIL C-terminus; This domain is found near to the C-terminus of leucine-rich repeat-containing proteins in the CARMIL family. In leucine-rich repeat-containing protein 16A (LRRC16A) it includes the region responsible for interaction with F-actin-capping protein subunit alpha-2 (CAPZA2).
Pssm-ID: 464966 [Multi-domain] Cd Length: 299 Bit Score: 280.89 E-value: 2.16e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 778 TQELCPVAMRVAEGHNKMLSNVAERVTVPRNFIRGALLEQAGQDIQNKLDEVKLSVVTYLTNSIVDEILQELYHSHKSLA 857
Cdd:pfam16000 1 AESLCPHVMQKAGVRQDLEKALSEKMTLPEEFVKSTLLEQAGVDIFNKLSEVKLSVASFLSDRIVDEVLEALSRSHHKLA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 858 RHLTQL-RTLSDPPGCP-GQGQDLSSRGRGRNHDHEETTDDELGTNIDTMAIKKQKR-CRKIRPVSAFISGSPQDMESQL 934
Cdd:pfam16000 81 RHLSQRgRTLLEPESLPdGDRPESSPLGPGKRHEGEIERLEELETPMATLKSKRKSIhSRKLRPVSVAFSVSELDLDKAP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 935 GNLGI--------PPGWFSGLGGSQPTATGSWEGLSELPTHGYKLRHQTQGRPRPPRTTPPGPGRPSMPAPGTRQENGMA 1006
Cdd:pfam16000 161 EEVPIhvedassgPPLPSSSPSEPELSASESLDSLSELPTEGQKLQHLTKGRPKRNKTRAPTRPPGKVGPAQDGEQNGLS 240
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966954247 1007 TRLDEGLEDFFSRRVMEEssSYPRTLRTVRPGLSE-PPLPPLQKKRRRGLFHFRRPRSFKG 1066
Cdd:pfam16000 241 GRVDEGLEDFFSKKVIKL--STPTSPTSEPSSSSLfPDSPKKRKKRKSGFFNFIKPRSSKG 299
|
|
| Carm_PH |
pfam17888 |
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain ... |
30-118 |
4.54e-34 |
|
Carmil pleckstrin homology domain; This is a non-canonical pleckstrin homology (PH) domain connected to a 16-leucine-rich repeat domain found in CARMIL (CP Arp2/3 complex myosin-I linker) proteins. The PH domain is interconnected with an N-terminal helix (N-helix), residues 10-20 and a C-terminal linker (Linker), residues 129-147 in Swiss:Q6EDY6. Structural and functional studies indicate that the PH domain involved in direct binding to the PM (plasma membrane) and a HD (helical domain) responsible for antiparallel dimerization and enhancement of CARMIL's membrane-binding activity. Furthermore, it appears that CARMIL's PH domain mediates non-specific binding to the membrane, in contrast to other PH domains that bind polyphosphorylated phosphatidylinositides, which are thought to function as signalling lipids.
Pssm-ID: 436119 Cd Length: 94 Bit Score: 126.24 E-value: 4.54e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 30 RVKLETKPKKFEDRVLALTSWRLHLFPLKVPAKVESSFNVLEIRAFNTLSQNQILVETERGMVSMRLPSAESVDQVTRHV 109
Cdd:pfam17888 6 SVKLETKGDKVEDRILVLTPWRLFLLSAKVPTKVERTFHFLEIRAINSRNPNQVIVETDKSNYSLKLASEEDVDHVVGHI 85
|
....*....
gi 966954247 110 SSALSKVCP 118
Cdd:pfam17888 86 LTALKKIFP 94
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
274-657 |
3.24e-16 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 82.92 E-value: 3.24e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 274 VLHALTLSHNPIEDKGFFSLSQQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPA---FASSLRYLDLSKNPGLLAT 350
Cdd:COG5238 88 QLLVVDWEGAEEVSPVALAETATAVATPPPDLRRIMAKTLEDSLILYLALPRRINLIQvlkDPLGGNAVHLLGLAARLGL 167
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 351 DEANALYSFLaQPNALVHLDLSGT---DCVIDLLLGALLHGccSHLTYLNLARNSCshrkGRESPPAFKQFFSSAYTLSH 427
Cdd:COG5238 168 LAAISMAKAL-QNNSVETVYLGCNqigDEGIEELAEALTQN--TTVTTLWLKRNPI----GDEGAEILAEALKGNKSLTT 240
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 428 VNLSATKLPLEALRALLQGLSLNSHLSdlHLDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGF-DSDLLTLVPALGK 506
Cdd:COG5238 241 LDLSNNQIGDEGVIALAEALKNNTTVE--TLYLSGNQIGAEGAIALAKALQGNTTLTSLDLSVNRIgDEGAIALAEGLQG 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 507 NKSLKHLFLGKNfNVKAKTLEeilhklvqliqeedcslqslsvadsrlklrtsILINALGSNTCLAKVDLSGNGMEDIGA 586
Cdd:COG5238 319 NKTLHTLNLAYN-GIGAQGAI--------------------------------ALAKALQENTTLHSLDLSDNQIGDEGA 365
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966954247 587 KMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNhTLRFMSFPVSDISQAYRSapeRTEDVWQKIQW 657
Cdd:COG5238 366 IALAKYLEGNTTLRELNLGKNNIGKQGAEALIDALQTN-RLHTLILDGNLIGAEAQQ---RLEQLLERIKS 432
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
189-477 |
1.62e-14 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 77.52 E-value: 1.62e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 189 REFNLLDFSHLESRDLALMVAALAYNQWFTKLYCKDLRLGSEVLEQVLHTLSKSGSLEELVLDNAGLKTDFVQKLAGVFG 268
Cdd:COG5238 154 NAVHLLGLAARLGLLAAISMAKALQNNSVETVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIGDEGAEILAEALK 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 269 ENGScvLHALTLSHNPIEDKGFFSLSqQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANPafasSLRYLDLSKNPgll 348
Cdd:COG5238 234 GNKS--LTTLDLSNNQIGDEGVIALA-EALKNNTTVETLYLSGNQIGAEGAIALAKALQGNT----TLTSLDLSVNR--- 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 349 ATDE-ANALYSFLAQPNALVHLDLS----GTDCVIdLLLGALLHGccSHLTYLNLARNscshRKGRESPPAFKQFFSSAY 423
Cdd:COG5238 304 IGDEgAIALAEGLQGNKTLHTLNLAyngiGAQGAI-ALAKALQEN--TTLHSLDLSDN----QIGDEGAIALAKYLEGNT 376
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 966954247 424 TLSHVNLSATKLPLEALRALLQGLSLNShlsdLH-LDLSSCELRSAGAQALQEQL 477
Cdd:COG5238 377 TLRELNLGKNNIGKQGAEALIDALQTNR----LHtLILDGNLIGAEAQQRLEQLL 427
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
278-628 |
1.76e-13 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 74.44 E-value: 1.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 278 LTLSHNPIEDkgFFSLSQQLlcfpTGLTKLCLAKTAISPRGLqaLGQTFGANPAFA-----SSLRYLDL--SKNPGLLAT 350
Cdd:COG5238 5 TFDRHRNIEE--LLSANPAT----TEQSELTKRATIVNLRSY--HLHGGAILLARYlqsrsSITQYLRFegQGDPGLNPV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 351 DEANALysfLAQPNALVHLDLSGTDCVIDLLLGALLHGCcsHLTYLNLARnscSHRKGRESPPAFKQFFSSAYTLSHVNL 430
Cdd:COG5238 77 ALEKAA---EAFPTQLLVVDWEGAEEVSPVALAETATAV--ATPPPDLRR---IMAKTLEDSLILYLALPRRINLIQVLK 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 431 SATKLPLEALRALLQGLSLNSHLSDLH---------LDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNGF-DSDLLTL 500
Cdd:COG5238 149 DPLGGNAVHLLGLAARLGLLAAISMAKalqnnsvetVYLGCNQIGDEGIEELAEALTQNTTVTTLWLKRNPIgDEGAEIL 228
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 501 VPALGKNKSLKHLFLGKNfNVKAKTLEEIlhklvqliqeedcslqslsvadsrlklrtsilINALGSNTCLAKVDLSGNG 580
Cdd:COG5238 229 AEALKGNKSLTTLDLSNN-QIGDEGVIAL--------------------------------AEALKNNTTVETLYLSGNQ 275
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 966954247 581 MEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLR 628
Cdd:COG5238 276 IGAEGAIALAKALQGNTTLTSLDLSVNRIGDEGAIALAEGLQGNKTLH 323
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
339-600 |
1.03e-12 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 70.85 E-value: 1.03e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 339 LDLSKNpgLLATDEANALYSFLAQPNALVHLDLS-----GTDCVIDLLLGALLHGCCshLTYLNLARNSCshrkGRESPP 413
Cdd:cd00116 28 LRLEGN--TLGEEAAKALASALRPQPSLKELCLSlnetgRIPRGLQSLLQGLTKGCG--LQELDLSDNAL----GPDGCG 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 414 AFKQFFSSaYTLSHVNLSATKLPLEALRALLQGL-SLNSHLSDLhlDLSSCELRSAGAQALQEQLGAVTCVGSLDLSDNG 492
Cdd:cd00116 100 VLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLkDLPPALEKL--VLGRNRLEGASCEALAKALRANRDLKELNLANNG 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 493 F-DSDLLTLVPALGKNKSLKHLFLGKNF--NVKAKTLEEILHKLVQL--IQEEDCSLQSLSVADsrlklrtsiLINALGS 567
Cdd:cd00116 177 IgDAGIRALAEGLKANCNLEVLDLNNNGltDEGASALAETLASLKSLevLNLGDNNLTDAGAAA---------LASALLS 247
|
250 260 270
....*....|....*....|....*....|....
gi 966954247 568 -NTCLAKVDLSGNGMEDIGAKMLSKALQINSSLR 600
Cdd:cd00116 248 pNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL 281
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
428-628 |
6.54e-11 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 65.45 E-value: 6.54e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 428 VNLSATKLPLEALRALlqGLSLNSHLSDLHLDLSSCELRS--AGAQALQEQLGAVTCVGSLDLSDNGFDSDLLTLVPALG 505
Cdd:cd00116 28 LRLEGNTLGEEAAKAL--ASALRPQPSLKELCLSLNETGRipRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLL 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 506 KNKSLKHLFLGKN------FNVKAKTLEEILHKLVQLIQE-----------------EDCSLQSLSVADSRLKLR-TSIL 561
Cdd:cd00116 106 RSSSLQELKLNNNglgdrgLRLLAKGLKDLPPALEKLVLGrnrlegascealakalrANRDLKELNLANNGIGDAgIRAL 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966954247 562 INALGSNTCLAKVDLSGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALES-NHTLR 628
Cdd:cd00116 186 AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSpNISLL 253
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
185-493 |
4.69e-10 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 62.76 E-value: 4.69e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 185 AEDNREFNLLDFS--HLESRDLALMVAALAYnQWFTKLYCKDLR------LGSEVLEQVLHtlskSGSLEELVLDNAGLK 256
Cdd:cd00116 47 LRPQPSLKELCLSlnETGRIPRGLQSLLQGL-TKGCGLQELDLSdnalgpDGCGVLESLLR----SSSLQELKLNNNGLG 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 257 TDFVQKLAGVFGENgSCVLHALTLSHNPIEDKGFFSLSqQLLCFPTGLTKLCLAKTAISPRGLQALGQTFGANpafaSSL 336
Cdd:cd00116 122 DRGLRLLAKGLKDL-PPALEKLVLGRNRLEGASCEALA-KALRANRDLKELNLANNGIGDAGIRALAEGLKAN----CNL 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 337 RYLDLSKNpgLLATDEANALYSFLAQPNALVHLDLSgtDCVIDLLLGALLHgccshltylnlarnscshrkgresppafK 416
Cdd:cd00116 196 EVLDLNNN--GLTDEGASALAETLASLKSLEVLNLG--DNNLTDAGAAALA----------------------------S 243
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966954247 417 QFFSSAYTLSHVNLSATKLPLEALRALLQGLSLNSHLsdLHLDLSSCELRSAGAQALQEQLGAVTC-VGSLDLSDNGF 493
Cdd:cd00116 244 ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESL--LELDLRGNKFGEEGAQLLAESLLEPGNeLESLWVKDDSF 319
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
334-663 |
2.24e-09 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 61.10 E-value: 2.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 334 SSLRYLDLSKNPGLlatdeanalysflAQPNALVHLDLSGTDCV-IDLLLGALlhgccSHLTYLNLARNSCShrkgrESP 412
Cdd:COG4886 96 TNLTELDLSGNEEL-------------SNLTNLESLDLSGNQLTdLPEELANL-----TNLKELDLSNNQLT-----DLP 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 413 PAFKQFFSsaytLSHVNLSATKL-----PLEALRALlQGLSL-NSHLSDLHLDLSSCelrsagaQALQEqlgavtcvgsL 486
Cdd:COG4886 153 EPLGNLTN----LKSLDLSNNQLtdlpeELGNLTNL-KELDLsNNQITDLPEPLGNL-------TNLEE----------L 210
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 487 DLSDNGFDSdlltLVPALGKNKSLKHLFLGKNfnvKAKTLEEILhklvQLIqeedcSLQSLSVADSRLKLrtsilINALG 566
Cdd:COG4886 211 DLSGNQLTD----LPEPLANLTNLETLDLSNN---QLTDLPELG----NLT-----NLEELDLSNNQLTD-----LPPLA 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 567 SNTCLAKVDLSGNGMEDIGAKMLSKALQINSSLRTILWDRNNTSALGFLDIARALESNHTLRFMSFPVSDISQAYRSAPE 646
Cdd:COG4886 270 NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLAL 349
|
330
....*....|....*..
gi 966954247 647 RTEDVWQKIQWCLVRNN 663
Cdd:COG4886 350 LTLLLLLNLLSLLLTLL 366
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
239-576 |
1.27e-05 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 49.16 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 239 LSKSGSLEELVLDNAGLKT--DFVQKLAGvfgengscvLHALTLSHNPIED--KGFFSLsqqllcfpTGLTKLCLAKTAI 314
Cdd:COG4886 109 LSNLTNLESLDLSGNQLTDlpEELANLTN---------LKELDLSNNQLTDlpEPLGNL--------TNLKSLDLSNNQL 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 315 S--PRGLQALgqtfganpafaSSLRYLDLSKNPgllATDEANAlysfLAQPNALVHLDLSGTD-CVIDLLLGALlhgccS 391
Cdd:COG4886 172 TdlPEELGNL-----------TNLKELDLSNNQ---ITDLPEP----LGNLTNLEELDLSGNQlTDLPEPLANL-----T 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 392 HLTYLNLARNSCShrkgreSPPAFKQFFSsaytLSHVNLSATKlplealralLQGLSLNSHLSDL-HLDLSSCELRSAGA 470
Cdd:COG4886 229 NLETLDLSNNQLT------DLPELGNLTN----LEELDLSNNQ---------LTDLPPLANLTNLkTLDLSNNQLTDLKL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 471 QALQE-------QLGAVTCVGSLDLSDNGFDSDLLTLVPALGKNKSLKHLFLGKNFNVKAKTLEEILHKLVQLIQEEDCS 543
Cdd:COG4886 290 KELELllglnslLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLTLLLTL 369
|
330 340 350
....*....|....*....|....*....|...
gi 966954247 544 LQSLSVADSRLKLRTSILINALGSNTCLAKVDL 576
Cdd:COG4886 370 GLLGLLEATLLTLALLLLTLLLLLLTTTAGVLL 402
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1185-1368 |
9.10e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 46.79 E-value: 9.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1185 AWQKRRSSDDAGPGSWKPPPPPQSTkPSFSAMRRAEATwHIAEESAPNHSCQSPSPASQDGEEEKEGTLFPERTLPARNA 1264
Cdd:PRK12323 362 AFRPGQSGGGAGPATAAAAPVAQPA-PAAAAPAAAAPA-PAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQA 439
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1265 KLQDPALAPRP-PKPVAVPRGRWPPQEPGVREEAEAGDATPGGNKPQlRLGSQQDQEEPEVQGLPDPGRRTAPLKP-KRT 1342
Cdd:PRK12323 440 SARGPGGAPAPaPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPA-AAPAPADDDPPPWEELPPEFASPAPAQPdAAP 518
|
170 180
....*....|....*....|....*.
gi 966954247 1343 RRAQSCDKLEPDRRRPPDPTGTSEPG 1368
Cdd:PRK12323 519 AGWVAESIPDPATADPDDAFETLAPA 544
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1119-1365 |
1.03e-03 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 43.77 E-value: 1.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1119 GFGGGRGPSFCRKMGTEVSEPGEGGPAPGIAQQPRVHGVALPGLERAKGWSfdgkregPDQEGSTQAWQKRRSSDDAGPG 1198
Cdd:PHA03247 262 GEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAP-------PDPPPPAPAGDAEEEDDEDGAM 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1199 SWKPPPPPQSTKPSFSAMRRAEATW----HIAEESAPNHSCQSPSPASQdgeeEKEGTlfPERTLPARNAKLQDPALAPR 1274
Cdd:PHA03247 335 EVVSPLPRPRQHYPLGFPKRRRPTWtppsSLEDLSAGRHHPKRASLPTR----KRRSA--RHAATPFARGPGGDDQTRPA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1275 PPKPVAVPrgrwppqEPGVREEAEAGDATPGGNKPQLRLGSQQDQEEPEVQGLPDPGRRTAPLKPKRTRRaQSCDKLEpd 1354
Cdd:PHA03247 409 APVPASVP-------TPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATEPAPDDPDDATR-KALDALR-- 478
|
250
....*....|.
gi 966954247 1355 RRRPPDPTGTS 1365
Cdd:PHA03247 479 ERRPPEPPGAD 489
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
1121-1335 |
1.99e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1121 GGGRGPSFCRKMGTEVSEPG-----EGGPAPGIAQQPRVHGVALPGLERAKGWSFDGKREGPDQEGSTQAWQKRRSSDDA 1195
Cdd:PRK07764 597 GEGPPAPASSGPPEEAARPAapaapAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966954247 1196 GPGSWKPPPPPQSTKPSFSAMRRAEAtwhiAEESAPNHSCQSPSPASQDgeeekegtlfPERTLPARNAKLQDPALAPRP 1275
Cdd:PRK07764 677 APAAPPPAPAPAAPAAPAGAAPAQPA----PAPAATPPAGQADDPAAQP----------PQAAQGASAPSPAADDPVPLP 742
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966954247 1276 PKPVAVPRGRWPPQEPGVREEAEAGDATPGGNKPqlrlgSQQDQEEPEV----QGLPDPGRRTA 1335
Cdd:PRK07764 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPP-----SPPSEEEEMAeddaPSMDDEDRRDA 801
|
|
| |
