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Conserved domains on  [gi|966950212|ref|XP_014997038|]
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H/ACA ribonucleoprotein complex subunit 2 isoform X1 [Macaca mulatta]

Protein Classification

ribosomal eL8 family protein( domain architecture ID 1903236)

ribosomal eL8 family protein such as large ribosomal subunit protein eL8 and H/ACA ribonucleoprotein complex subunit 2

Gene Ontology:  GO:0003723
SCOP:  4001513

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SNU13 super family cl42391
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ...
 32-74 1.22e-05

U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA.


The actual alignment was detected with superfamily member cd21104:

Pssm-ID: 455736  Cd Length: 122  Bit Score: 40.39  E-value: 1.22e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 966950212  32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKG 74
Cdd:cd21104    1 NPKAYPLADAQLTQTILDLVQQAANYKQLKKGANEATKTLNRG 43
 
Name Accession Description Interval E-value
SNU13 cd21104
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ...
 32-74 1.22e-05

U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA.


Pssm-ID: 411046  Cd Length: 122  Bit Score: 40.39  E-value: 1.22e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 966950212  32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKG 74
Cdd:cd21104    1 NPKAYPLADAQLTQTILDLVQQAANYKQLKKGANEATKTLNRG 43
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 46-77 1.79e-04

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 36.80  E-value: 1.79e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 966950212  46 KLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKG 77
Cdd:pfam01248  2 AIYEVLKKALKTGKLVLGLKEVTKALERGEAK 33
 
Name Accession Description Interval E-value
SNU13 cd21104
U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, ...
 32-74 1.22e-05

U4/U6.U5 small nuclear ribonucleoprotein SNU13; U4/U6.U5 small nuclear ribonucleoprotein SNU13, also known as NHP2-like protein 1 or U4/U6.U5 tri-snRNP 15.5 kDa protein, is a component of the spliceosome B complex, involved in pre-mRNA splicing. It binds to the 5'-stem-loop of U4 snRNA.


Pssm-ID: 411046  Cd Length: 122  Bit Score: 40.39  E-value: 1.22e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 966950212  32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKG 74
Cdd:cd21104    1 NPKAYPLADAQLTQTILDLVQQAANYKQLKKGANEATKTLNRG 43
Ribosomal_L7Ae pfam01248
Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from ...
 46-77 1.79e-04

Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118.


Pssm-ID: 426153 [Multi-domain]  Cd Length: 95  Bit Score: 36.80  E-value: 1.79e-04
                         10        20        30
                 ....*....|....*....|....*....|..
gi 966950212  46 KLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKG 77
Cdd:pfam01248  2 AIYEVLKKALKTGKLVLGLKEVTKALERGEAK 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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