|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
84-405 |
1.64e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 72.01 E-value: 1.64e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 84 VQKGGSVGSLSVNKHRGLSLTETELEELRAQVLQLVAELEETR----ELAGQHEDDSLELQGLLEDERLASAQ------Q 153
Cdd:TIGR02168 655 VRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEkalaELRKELEELEEELEQLRKELEELSRQisalrkD 734
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 154 AEVFTKQIQQLQGELRSLREEISLLEHEKESELKEIErELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELE 233
Cdd:TIGR02168 735 LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE-EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 234 DMERIRGDYEMEIASLRAEMEMKSSEPSSslglsdysgLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQ 313
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLED---------LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 314 RATERWLESQTLSMTSAESQTSEMDFLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELC--------CELEELQHHRQVSE 385
Cdd:TIGR02168 885 LEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQerlseeysLTLEEAEALENKIE 964
|
330 340
....*....|....*....|
gi 966935549 386 EEQRRLQRELKCAQNEVLRF 405
Cdd:TIGR02168 965 DDEEEARRRLKRLENKIKEL 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
101-359 |
2.19e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.04 E-value: 2.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 101 LSLTETELEELRAQVLQLVAELEETRElagQHEDDSLELQGLLEDERLASAQQAEVfTKQIQQLQGELRSLREEISlleh 180
Cdd:COG1196 248 LEELEAELEELEAELAELEAELEELRL---ELEELELELEEAQAEEYELLAELARL-EQDIARLEERRRELEERLE---- 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 181 EKESELKEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDlcrmQNELEDMERIRGDYEMEIASLRAEMEMKSSEp 260
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA----EEALLEAEAELAEAEEELEELAEELLEALRA- 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 261 sSSLGLSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERwLESQTLSMTSAESQTSEMDfl 340
Cdd:COG1196 395 -AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE-AELEEEEEALLELLAELLE-- 470
|
250
....*....|....*....
gi 966935549 341 epdpEMQLLRQQLRDAEEQ 359
Cdd:COG1196 471 ----EAALLEAALAELLEE 485
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
107-442 |
3.66e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 3.66e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 107 ELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEvftKQIQQLQGELRSLREEISLLE---HEKE 183
Cdd:TIGR02169 188 RLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALE---RQKEAIERQLASLEEELEKLTeeiSELE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 184 SELKEIERELHLAQAEIQSL-----RQAAEDSAtEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEmkss 258
Cdd:TIGR02169 265 KRLEEIEQLLEELNKKIKDLgeeeqLRVKEKIG-ELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIE---- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 259 epssslglsdysGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERWLESQTLSMTSAESQTSEMD 338
Cdd:TIGR02169 340 ------------ELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 339 FLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHsvtqcDTLL 418
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEY-----DRVE 482
|
330 340
....*....|....*....|....
gi 966935549 419 SRLTELQEKYKASQKEMGQLQMEQ 442
Cdd:TIGR02169 483 KELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
160-451 |
3.86e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 3.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 160 QIQQLQGELRSLREEISLLE---HEKESELKEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDME 236
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEekiAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 237 RI---RGDYEMEIASLRAEMEMKSSEPSSSLGLS-----DYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLE 308
Cdd:TIGR02168 751 QLskeLTELEAEIEELEERLEEAEEELAEAEAEIeeleaQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 309 S-----ERTQRATERWLESQTLSMTSAESQTSEMDFLEPDpemqlLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQV 383
Cdd:TIGR02168 831 RriaatERRLEDLEEQIEELSEDIESLAAEIEELEELIEE-----LESELEALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966935549 384 SEEEQRRLQRELKCAQNEVlrfqtSHSVTQCDTLLSRLTELQEKYKASQKEMGQLQMEQCELLEDQRR 451
Cdd:TIGR02168 906 LESKRSELRRELEELREKL-----AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE 968
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
105-848 |
5.99e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.54 E-value: 5.99e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 105 ETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLederLASAQQAEVFTKQIQQLQGELRSLREEISLLEH---E 181
Cdd:TIGR02168 252 EEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL----YALANEISRLEQQKQILRERLANLERQLEELEAqleE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 182 KESELKEIERELHLAQAEIQSLRQaaedsatehesDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEM-EMKSSEP 260
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKE-----------ELESLEAELEELEAELEELESRLEELEEQLETLRSKVaQLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 261 SsslglsdysgLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATErwlesqTLSMTSAESQTSEMDFL 340
Cdd:TIGR02168 397 S----------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELE------ELEEELEELQEELERLE 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 341 EpdpEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELqhhrQVSEEEQRRLQRELKCAQNEVLRFQTSHSVtqcdtlLSR 420
Cdd:TIGR02168 461 E---ALEELREELEEAEQALDAAERELAQLQARLDSL----ERLQENLEGFSEGVKALLKNQSGLSGILGV------LSE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 421 LTELQEKYKASQKEM--GQLQMEQCELLEDQRR-MQEEQGQLQEELHRLTLPLPKSGLLLKSQ-ELLTKLEDLCELQLLY 496
Cdd:TIGR02168 528 LISVDEGYEAAIEAAlgGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDrEILKNIEGFLGVAKDL 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 497 QGMQEEQKKLIQN--QDCVLKEQLEIHEELRrfKESHFQEVLENPDD------------SKLAKSSKYNRNKQSKLLMEQ 562
Cdd:TIGR02168 608 VKFDPKLRKALSYllGGVLVVDDLDNALELA--KKLRPGYRIVTLDGdlvrpggvitggSAKTNSSILERRREIEELEEK 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 563 MQALQVLYEASQAEQELLQQEQGRLLEERKRLQADL---------------------QLCLEEMQLLQVQSPSIKMSLES 621
Cdd:TIGR02168 686 IEELEEKIAELEKALAELRKELEELEEELEQLRKELeelsrqisalrkdlarleaevEQLEERIAQLSKELTELEAEIEE 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 622 YGKSYGSmapSNENCRKTYDTTVDDNESYNKSYASTQTSSESFLKSYDSSTSASEAYGKSycTTSDSSITYKKSYGSTSS 701
Cdd:TIGR02168 766 LEERLEE---AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL--RERLESLERRIAATERRL 840
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 702 SDTcQKSFVSSCTDEEPAEPEdMEHFEEMVAKVLIKLQAVQAMYQISQEEHSQLQEQMEKLLAKQKDLKEELDACEREFK 781
Cdd:TIGR02168 841 EDL-EEQIEELSEDIESLAAE-IEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELE 918
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966935549 782 ECMECLEKPVAPQND-KNEIKELQTKLRElqlQYQASMDEQGRLlvvQEQLEGQLQCCQEELRQLREK 848
Cdd:TIGR02168 919 ELREKLAQLELRLEGlEVRIDNLQERLSE---EYSLTLEEAEAL---ENKIEDDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
153-451 |
2.21e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.61 E-value: 2.21e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 153 QAEVFTKQIQQLQGELRSLREEISllehEKESELKEIERELHLAQAEIQSLRqaaeDSATEHESDIASLQEDLCRMQNEL 232
Cdd:TIGR02168 226 ELALLVLRLEELREELEELQEELK----EAEEELEELTAELQELEEKLEELR----LEVSELEEEIEELQKELYALANEI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 233 EDMERirgdyemEIASLRAEMEMKSSEPSSslglsdysgLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESErt 312
Cdd:TIGR02168 298 SRLEQ-------QKQILRERLANLERQLEE---------LEAQLEELESKLDELAEELAELEEKLEELKEELESLEAE-- 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 313 qraterwlesqtLSMTSAESQTSEMDFLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQ 392
Cdd:TIGR02168 360 ------------LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELL 427
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 966935549 393 RELKCAQNEVLRFQTSHSVTQCDTLLSRLTELQEKYKASQKEMGQLQMEQCELLEDQRR 451
Cdd:TIGR02168 428 KKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
108-361 |
3.94e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.08 E-value: 3.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 108 LEELRAQVLQLVAELEETRELAGQHEDdsleLQGLLEDERLASAQQAEVFTKQI--QQLQGELRSLREEISLLEhEKESE 185
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEA----ELDALQERREALQRLAEYSWDEIdvASAEREIAELEAELERLD-ASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 186 LKEIERELHLAQAEIQSLRQ---AAEDSATEHESDIASLQEDLCRMQNELEDMERI-RGDYEMEIASLRAEMEMKSSEPS 261
Cdd:COG4913 687 LAALEEQLEELEAELEELEEeldELKGEIGRLEKELEQAEEELDELQDRLEAAEDLaRLELRALLEERFAAALGDAVERE 766
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 262 SSLGLSD-YSGLQEELQELRER-----------YHFLNEEYRALQESNSSLTGQLADLESERTQRATERWLESQTLSMTs 329
Cdd:COG4913 767 LRENLEErIDALRARLNRAEEEleramrafnreWPAETADLDADLESLPEYLALLDRLEEDGLPEYEERFKELLNENSI- 845
|
250 260 270
....*....|....*....|....*....|..
gi 966935549 330 aESQTsemDFLepdpemQLLRQQLRDAEEQMH 361
Cdd:COG4913 846 -EFVA---DLL------SKLRRAIREIKERID 867
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
101-849 |
4.59e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 4.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 101 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEvftkQIQQLQGELRSLREEISLLEH 180
Cdd:TIGR02168 227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE----EIEELQKELYALANEISRLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 181 EKEsELKEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMErirgDYEMEIASLRAEMEMKSSEp 260
Cdd:TIGR02168 303 QKQ-ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE----AELEELEAELEELESRLEE- 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 261 ssslglsdysgLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERwlESQTLSMTSAESQTSEMDFL 340
Cdd:TIGR02168 377 -----------LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI--EELLKKLEEAELKELQAELE 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 341 EPDPEMQLLRQQLRDAEEQMHGMKN----KCQELCCELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHSVTQCDT 416
Cdd:TIGR02168 444 ELEEELEELQEELERLEEALEELREeleeAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILG 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 417 LLSRLTELQEKYKASQKEM--GQLQMEQCELLEDQRR-MQEEQGQLQEELHRLTLPLPKSGLLLKSQ-ELLTKLEDLCEL 492
Cdd:TIGR02168 524 VLSELISVDEGYEAAIEAAlgGRLQAVVVENLNAAKKaIAFLKQNELGRVTFLPLDSIKGTEIQGNDrEILKNIEGFLGV 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 493 QLLYQGMQEEQKKLIQN--QDCVLKEQLEIHEELRrfKESHFQEVLENPDD------------SKLAKSSKYNRNKQSKL 558
Cdd:TIGR02168 604 AKDLVKFDPKLRKALSYllGGVLVVDDLDNALELA--KKLRPGYRIVTLDGdlvrpggvitggSAKTNSSILERRREIEE 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 559 LMEQMQALQVLYEASQAEQELLQQEQGRLLEERKRLQADLQlcleemqllqvqspSIKMSLESYGKSYGSMAPSNENCRK 638
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELE--------------ELSRQISALRKDLARLEAEVEQLEE 747
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 639 TYDTTVDDNESYNKSYASTQTSSESflksydsstsaseaygksycttsdssitykksygstsssdtcqksfvssCTDEEP 718
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEE-------------------------------------------------AEEELA 778
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 719 AEPEDMEHFEEMVAKVLIKLQAVQAMYQISQEEHSQLQEQMEKLLAKQKDLKEELDACEREFKECMECLEKPVAPQNDKN 798
Cdd:TIGR02168 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA 858
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|..
gi 966935549 799 -EIKELQTKLRELQLQYQASMDEQGRLLVVQEQLEGQLQCCQEELRQLREKR 849
Cdd:TIGR02168 859 aEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
98-254 |
5.44e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 60.31 E-value: 5.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 98 HRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDdslELQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISL 177
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALRE---ELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 178 LEH----------EKESELKEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIA 247
Cdd:COG4913 364 LEAllaalglplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLL 443
|
....*..
gi 966935549 248 SLRAEME 254
Cdd:COG4913 444 ALRDALA 450
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
148-378 |
7.45e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 7.45e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 148 LASAQQAEVFTKQIQQLQGELRSLREEISLLEHEKES---ELKEIERELHLAQAEIQSLrqaaEDSATEHESDIASLQED 224
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKAllkQLAALERRIAALARRIRAL----EQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 225 LCRMQNELEDMERirgdyemEIASLRAEMEMKSSEPSSSLGLSdysglQEELQELRERYHFLNEEYRALQESNSSLTGQL 304
Cdd:COG4942 92 IAELRAELEAQKE-------ELAELLRALYRLGRQPPLALLLS-----PEDFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966935549 305 ADLESERTQRATERWLESQTLSMTSAESQTSEMDFLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQ 378
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
185-600 |
2.27e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 2.27e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 185 ELKEIERELHLAQAEIQSLRQAAEDSAtEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKSsepsssl 264
Cdd:COG4717 72 ELKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAE------- 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 265 glsdysgLQEELQELRERYhflnEEYRALQESNSSLTGQLADLESERTQraterwLESQTLSMTSAESQTSEMDFLEPDP 344
Cdd:COG4717 144 -------LPERLEELEERL----EELRELEEELEELEAELAELQEELEE------LLEQLSLATEEELQDLAEELEELQQ 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 345 EMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHSVTQCDTLLSR--LT 422
Cdd:COG4717 207 RLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVlgLL 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 423 ELQEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTLPLPKSGLLLKS------QELLTKLEDLCElQLLY 496
Cdd:COG4717 287 ALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLdrieelQELLREAEELEE-ELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 497 QGMQEEQKKLIQNQDCVLKEQL-EIHEELRRFKE-----SHFQEVLENPDDSKLAKSSKYNRNKqsklLMEQMQALQVLY 570
Cdd:COG4717 366 EELEQEIAALLAEAGVEDEEELrAALEQAEEYQElkeelEELEEQLEELLGELEELLEALDEEE----LEEELEELEEEL 441
|
410 420 430
....*....|....*....|....*....|
gi 966935549 571 EASQAEQELLQQEQGRLLEERKRLQADLQL 600
Cdd:COG4717 442 EELEEELEELREELAELEAELEQLEEDGEL 471
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
183-425 |
4.80e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 4.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 183 ESELKEIERELHLAQAEIQSLRQ-----AAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKS 257
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQknglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 258 SEPSSSLGLSDYSGLQEELQELRERYHFLNEEYRALQEsnssltgQLADLESERTQRATERWLESQTlsmtsaesqtsem 337
Cdd:COG3206 261 QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRA-------QIAALRAQLQQEAQRILASLEA------------- 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 338 dflepdpEMQLLRQQLRDAEEQMHGMKNKCQELcceleelqhhrQVSEEEQRRLQRELKcAQNEVLrfqtshsvtqcDTL 417
Cdd:COG3206 321 -------ELEALQAREASLQAQLAQLEARLAEL-----------PELEAELRRLEREVE-VARELY-----------ESL 370
|
....*...
gi 966935549 418 LSRLTELQ 425
Cdd:COG3206 371 LQRLEEAR 378
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
107-333 |
5.69e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.79 E-value: 5.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 107 ELEELRAQVLQLVAELEETRELAGQhEDDSLELQGLLEDERLASAQQaevftkQIQQLQGELRSLREEisllEHEKESEL 186
Cdd:COG1196 299 RLEQDIARLEERRRELEERLEELEE-ELAELEEELEELEEELEELEE------ELEEAEEELEEAEAE----LAEAEEAL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 187 KEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKSSEpssslgL 266
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE------E 441
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966935549 267 SDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERWLESQTLSMTSAESQ 333
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
36-313 |
1.31e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 1.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 36 ERKKGQRWGSLERRGMQAMEGEVLLPALYEEEEEEEEEEEEVEEEEEQVQKggsvgslSVNKHRG-LSLTETELEELRAQ 114
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEA-------QIEQLKEeLKALREALDELRAE 811
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 115 VLQLVAELEETRELAGQHEDDSLELQGLLEDerlaSAQQAEVFTKQIQQLQGELRSLREEISLLEHEKESELKEIErELH 194
Cdd:TIGR02168 812 LTLLNEEAANLRERLESLERRIAATERRLED----LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA-SLE 886
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 195 LAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASL------RAEMEMKSSEPSSSLGLSD 268
Cdd:TIGR02168 887 EALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLqerlseEYSLTLEEAEALENKIEDD 966
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 966935549 269 YSGLQEELQELRERYHFLN-------EEYRALQESNSSLTGQLADLESERTQ 313
Cdd:TIGR02168 967 EEEARRRLKRLENKIKELGpvnlaaiEEYEELKERYDFLTAQKEDLTEAKET 1018
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
101-430 |
1.50e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 101 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISlleh 180
Cdd:COG4717 141 LAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE---- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 181 EKESELKEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASL---------RA 251
Cdd:COG4717 217 EAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLlallflllaRE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 252 EMEMKSSEPSSSLGLSDYSGLQEELQELRERYHFL----NEEYRALQESNSSLTGQLADLESERTQRATERWLESQTLSM 327
Cdd:COG4717 297 KASLGKEAEELQALPALEELEEEELEELLAALGLPpdlsPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALL 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 328 TSAESQTSEM--DFLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELCC---------ELEELQHHRQVSEEEQRRLQRELK 396
Cdd:COG4717 377 AEAGVEDEEElrAALEQAEEYQELKEELEELEEQLEELLGELEELLEaldeeeleeELEELEEELEELEEELEELREELA 456
|
330 340 350
....*....|....*....|....*....|....*...
gi 966935549 397 CAQNEVLRFQTSHSV----TQCDTLLSRLTELQEKYKA 430
Cdd:COG4717 457 ELEAELEQLEEDGELaellQELEELKAELRELAEEWAA 494
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
173-526 |
1.73e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 173 EEISLLEHEKESELKEIERelhlaQAEIQSLRQAAEDSATEHESDIASLQEDlcRMQNELEDMERIRGDYEMEIASLRAE 252
Cdd:COG1196 189 ERLEDILGELERQLEPLER-----QAEKAERYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELEAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 253 MEmkssepssslglsdysGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERtQRATERwleSQTLSMTSAES 332
Cdd:COG1196 262 LA----------------ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDI-ARLEER---RRELEERLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 333 QTsemdflepdpEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQtshsvt 412
Cdd:COG1196 322 EE----------ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA------ 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 413 qcdtlLSRLTELQEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTLPLPKSGLLLKSQELLTKLEDlcEL 492
Cdd:COG1196 386 -----EELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE--EE 458
|
330 340 350
....*....|....*....|....*....|....
gi 966935549 493 QLLYQGMQEEQKKLIQNQDCVLKEQLEIHEELRR 526
Cdd:COG1196 459 EALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
110-452 |
1.81e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 110 ELRAQVLQLVAELEE-TRELAG-QHEDDSLE-LQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISllehEKESEL 186
Cdd:TIGR02169 671 SEPAELQRLRERLEGlKRELSSlQSELRRIEnRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE----ELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 187 KEIERELHLAQAEIQSLrqaaedsatehESDIASLQEDLCRMQNELEDMERirgdyemeiaslraememkssepssslgl 266
Cdd:TIGR02169 747 SSLEQEIENVKSELKEL-----------EARIEELEEDLHKLEEALNDLEA----------------------------- 786
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 267 sdySGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERwlesQTLSMTSAESQTSEMDFLEpdpEM 346
Cdd:TIGR02169 787 ---RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI----QELQEQRIDLKEQIKSIEK---EI 856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 347 QLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQRELK--CAQNEVLRFQTSHSVTQCDTLLSRLTEL 424
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEelEAQIEKKRKRLSELKAKLEALEEELSEI 936
|
330 340 350
....*....|....*....|....*....|....
gi 966935549 425 QEKYKASQKE------MGQLQMEQCELLEDQRRM 452
Cdd:TIGR02169 937 EDPKGEDEEIpeeelsLEDVQAELQRVEEEIRAL 970
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
105-246 |
1.87e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 50.31 E-value: 1.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 105 ETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDerlASAQQAEVFT-KQIQQLQGELRSLREEISLLEheke 183
Cdd:COG1579 37 EDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKK---YEEQLGNVRNnKEYEALQKEIESLKRRISDLE---- 109
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966935549 184 SELKEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEI 246
Cdd:COG1579 110 DEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKI 172
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
107-358 |
2.51e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 107 ELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEhEKESEL 186
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE-EALAEL 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 187 KEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKSSEPSSSLGL 266
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 267 SDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERWLESQTLSMTSAESQTSEMDFLEPDPEM 346
Cdd:COG1196 514 LLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALA 593
|
250
....*....|..
gi 966935549 347 QLLRQQLRDAEE 358
Cdd:COG1196 594 RGAIGAAVDLVA 605
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
99-255 |
4.53e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 50.63 E-value: 4.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 99 RGLSLtETELEELRAQVLqlvAELEETRELAGQHEDDSLELqgllEDERlasaqqaevftkqIQQLQGELRSLREEISLL 178
Cdd:COG2433 374 RGLSI-EEALEELIEKEL---PEEEPEAEREKEHEERELTE----EEEE-------------IRRLEEQVERLEAEVEEL 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 179 E---HEKESELKEIERELHLAQAEiqslrqaaEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEM 255
Cdd:COG2433 433 EaelEEKDERIERLERELSEARSE--------ERREIRKDREISRLDREIERLERELEEERERIEELKRKLERLKELWKL 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
107-314 |
4.91e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 4.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 107 ELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEHEKESEL 186
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALL 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 187 KEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERI---------RGDYEMEIASLRAEMEmks 257
Cdd:COG1196 701 AEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAleelpeppdLEELERELERLEREIE--- 777
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966935549 258 sepssSLG----LSDysglqEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQR 314
Cdd:COG1196 778 -----ALGpvnlLAI-----EEYEELEERYDFLSEQREDLEEARETLEEAIEEIDRETRER 828
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
107-432 |
6.97e-06 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 49.68 E-value: 6.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 107 ELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASaqqaevftkqiQQLQGELRSLREEISLLEHEKESEL 186
Cdd:pfam19220 21 DLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAY-----------GKLRRELAGLTRRLSAAEGELEELV 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 187 KEIERelhlAQAEIQSLRQAAEDSATEhESDIASLQEDLcrmQNELEDMERIRGDYEMEIASLRAEMEMKSSEPSSSLGl 266
Cdd:pfam19220 90 ARLAK----LEAALREAEAAKEELRIE-LRDKTAQAEAL---ERQLAAETEQNRALEEENKALREEAQAAEKALQRAEG- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 267 sdysglqeELQELRERYHFLNEEYRALQ----ESN---SSLTGQLADLESER-TQRATERWLESQtLSMTSAESQTSEMD 338
Cdd:pfam19220 161 --------ELATARERLALLEQENRRLQalseEQAaelAELTRRLAELETQLdATRARLRALEGQ-LAAEQAERERAEAQ 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 339 FLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELcceLEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHSVTQCDtLL 418
Cdd:pfam19220 232 LEEAVEAHRAERASLRMKLEALTARAAATEQL---LAEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEAD-LE 307
|
330
....*....|....
gi 966935549 419 SRLTELQEKYKASQ 432
Cdd:pfam19220 308 RRTQQFQEMQRARA 321
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
101-395 |
7.68e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 7.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 101 LSLTETELEELRAQVLQLvaelEETRELAGQHEDDSLELQGLledERLASAQQAEVFTKQIQQLQGELRSLREEISLLEH 180
Cdd:COG4913 237 LERAHEALEDAREQIELL----EPIRELAERYAAARERLAEL---EYLRAALRLWFAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 181 EKEselkEIERELHLAQAEIQSLRQAAEDSATEhesDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAememksSEP 260
Cdd:COG4913 310 ELE----RLEARLDALREELDELEAQIRGNGGD---RLEQLEREIERLERELEERERRRARLEALLAALGL------PLP 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 261 SSslglsdysglQEELQELRERyhflneeyralqesnssLTGQLADLESERTQraterwlesqtlsmtsaesqtsemdfl 340
Cdd:COG4913 377 AS----------AEEFAALRAE-----------------AAALLEALEEELEA--------------------------- 402
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 966935549 341 epdpemqlLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQREL 395
Cdd:COG4913 403 --------LEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
163-595 |
1.07e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 163 QLQGELRSLREEISLLEHEKES---ELKEIERELHlaqaEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIR 239
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSSlqsELRRIENRLD----ELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 240 GDYEMEIASLRAEMEMKSSEPSSSLglSDYSGLQEELQEL-----RERYHFLNEEYRALQESNSSLTGQLADLESErtqr 314
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELE--EDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQK---- 820
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 315 aterwLESQTLSMTSAESqtsemdflepdpEMQLLRQQLRDAEEQMhgmknkcQELCCELEELQhhrqvseEEQRRLQRE 394
Cdd:TIGR02169 821 -----LNRLTLEKEYLEK------------EIQELQEQRIDLKEQI-------KSIEKEIENLN-------GKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 395 LKCAQNEVLrfqtshsvtqcdTLLSRLTELQEKYKASQKEMGQLQMEQCELledqrrmqeeqgqlqeelhRLTLPLPKSG 474
Cdd:TIGR02169 870 LEELEAALR------------DLESRLGDLKKERDELEAQLRELERKIEEL-------------------EAQIEKKRKR 918
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 475 LLLKSQELLTKLEDLCELQLLYQGMQEEQKKLIQNQDcVLKEQLEIHEELRRFKESHFQEVLEnpddsklaksskynrnk 554
Cdd:TIGR02169 919 LSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRALEPVNMLAIQE----------------- 980
|
410 420 430 440
....*....|....*....|....*....|....*....|.
gi 966935549 555 qskllmeqmqalqvlYEASQAEQELLQQEQGRLLEERKRLQ 595
Cdd:TIGR02169 981 ---------------YEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
140-451 |
1.10e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 140 QGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEHEKESELKEIERELHLAQAEiqSLRQAAEDSA----TEHE 215
Cdd:pfam17380 263 QTMTENEFLNQLLHIVQHQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAE--KARQAEMDRQaaiyAEQE 340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 216 SDIASLQEDLCRMQNE--LEDMERIRG-DYEMEIASLRaEMEMkssepssslglsdysgLQEELQELRERYHflneeyra 292
Cdd:pfam17380 341 RMAMERERELERIRQEerKRELERIRQeEIAMEISRMR-ELER----------------LQMERQQKNERVR-------- 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 293 lQESNSSLTGQLadLESERTQRATERWLESQTLSMTSAESQTSEMDFLEPD--PEMQLLRQQLRDAEEQMHGMKNKCQEL 370
Cdd:pfam17380 396 -QELEAARKVKI--LEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEEraREMERVRLEEQERQQQVERLRQQEEER 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 371 ---CCELEELQHHRQVSEEEQRR-LQRELKCAQNEVLRFQTSHSV--TQCDTLLSRLTELQEKYKASQKEMGQLQMEQCE 444
Cdd:pfam17380 473 krkKLELEKEKRDRKRAEEQRRKiLEKELEERKQAMIEEERKRKLleKEMEERQKAIYEEERRREAEEERRKQQEMEERR 552
|
....*..
gi 966935549 445 LLEDQRR 451
Cdd:pfam17380 553 RIQEQMR 559
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
99-263 |
1.27e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 99 RGLSLTETELEELRAQVLQLVAELEETREL----------AGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGEL 168
Cdd:COG4942 76 QELAALEAELAELEKEIAELRAELEAQKEElaellralyrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEEL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 169 RSLREEISLLEHEKESELKEIERELHLAQAEIQSLRQAAEdsatEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIAS 248
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEEERAALEALKA----ERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
170
....*....|....*
gi 966935549 249 LRAEMEMKSSEPSSS 263
Cdd:COG4942 232 LEAEAAAAAERTPAA 246
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
158-395 |
2.09e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 158 TKQIQQLQGELRSLREEISLLEhekeSELKEIERELHLAQAEIQSLRQAAEDSatEHESDIASLQEDLCRMQNELEDMER 237
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAE----ERLEALEAELDALQERREALQRLAEYS--WDEIDVASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 238 irgdyemeiaslraememkssepssslGLSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQrate 317
Cdd:COG4913 683 ---------------------------SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDE---- 731
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966935549 318 rwLESQTLSMTSAESQTSEMDFLEpdpemQLLRQQLRDAEEQMHgmknkcqelccelEELQHHRQVSEEEQRRLQREL 395
Cdd:COG4913 732 --LQDRLEAAEDLARLELRALLEE-----RFAAALGDAVERELR-------------ENLEERIDALRARLNRAEEEL 789
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
96-392 |
4.09e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.81 E-value: 4.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 96 NKHRGLSLTETELEELRAQVlqlvAELEETRELAGQHEDDSLELQGllEDERLASAQQAEvfTKQIQQLQGELRSLREEI 175
Cdd:pfam15921 538 NEGDHLRNVQTECEALKLQM----AEKDKVIEILRQQIENMTQLVG--QHGRTAGAMQVE--KAQLEKEINDRRLELQEF 609
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 176 SLLEHEKESELKEIE--------RELHLAQAEIQSLRqAAEDSATEHE----------SDIASLQED---LCR-MQNELE 233
Cdd:pfam15921 610 KILKDKKDAKIRELEarvsdlelEKVKLVNAGSERLR-AVKDIKQERDqllnevktsrNELNSLSEDyevLKRnFRNKSE 688
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 234 DMERIRGDYEMEIASLRAEME-----MKSSEPSSSLGLSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLE 308
Cdd:pfam15921 689 EMETTTNKLKMQLKSAQSELEqtrntLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLK 768
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 309 SERTQRaterwleSQTLSMTSAESQTSEmdflepdPEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQ 388
Cdd:pfam15921 769 EEKNKL-------SQELSTVATEKNKMA-------GELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQES 834
|
....
gi 966935549 389 RRLQ 392
Cdd:pfam15921 835 VRLK 838
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
101-237 |
4.16e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.70 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 101 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSlELQGLLEDERLASAQQAEV---FTK---QIQQLQGELRSLREE 174
Cdd:COG3206 228 LAEARAELAEAEARLAALRAQLGSGPDALPELLQSP-VIQQLRAQLAELEAELAELsarYTPnhpDVIALRAQIAALRAQ 306
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966935549 175 IsllEHEKESELKEIERELHLAQAEIQSLRQAAEdsatEHESDIASLQEDlcrmQNELEDMER 237
Cdd:COG3206 307 L---QQEAQRILASLEAELEALQAREASLQAQLA----QLEARLAELPEL----EAELRRLER 358
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
373-611 |
6.38e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 47.24 E-value: 6.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 373 ELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHSV--TQCDTLLSRLTELQEKYKASQKEMGQLQMEQCELLEDQR 450
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAEleAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 451 RMQEEQGQLQEELHRLTLPLP--KSGLLLKSQELLTKLEDLCELQLLYQGMQEEQKKLIQNQDCVLKEQLEIHEELRRFK 528
Cdd:COG1196 306 RLEERRRELEERLEELEEELAelEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 529 ESHFQEVLEnpdDSKLAKSSKYNRNKQSKLLMEQMQALQVLYEASQAEQELLQQEQGRLLEERKRLQADLQLCLEEMQLL 608
Cdd:COG1196 386 EELLEALRA---AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
...
gi 966935549 609 QVQ 611
Cdd:COG1196 463 ELL 465
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
104-318 |
8.68e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 8.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 104 TETELEELRAQVLQLVAELEETRELAGQHEDdslelqglLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEHEKE 183
Cdd:COG4913 666 AEREIAELEAELERLDASSDDLAALEEQLEE--------LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 184 S--ELKEIERELHLAQAEIQSLRQAAEDSATEH-ESDIASLQEDLCRMQNELED-MERIRGDYEMEIASLRAEMEmksse 259
Cdd:COG4913 738 AaeDLARLELRALLEERFAAALGDAVERELRENlEERIDALRARLNRAEEELERaMRAFNREWPAETADLDADLE----- 812
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966935549 260 pssslglsDYSGLQEELQELRER--YHFLNEEYRALQE-SNSSLTGQLADLESERtQRATER 318
Cdd:COG4913 813 --------SLPEYLALLDRLEEDglPEYEERFKELLNEnSIEFVADLLSKLRRAI-REIKER 865
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
86-444 |
1.61e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.53 E-value: 1.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 86 KGGSVGSLSVNKHRGLSLTETELEELRAQVLQLVAELEETRelagqheddslelqglledERLASAQQaevftkQIQQLQ 165
Cdd:COG4717 61 PQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELE-------------------EELEELEA------ELEELR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 166 GELRSLREEISLLEHEKesELKEIERELHLAQAEIQSLRQAAEDSAtEHESDIASLQEDLCRMQNELEDmerirgdyEME 245
Cdd:COG4717 116 EELEKLEKLLQLLPLYQ--ELEALEAELAELPERLEELEERLEELR-ELEEELEELEAELAELQEELEE--------LLE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 246 IASLRAEMEMKSSepssslgLSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERWLESQTL 325
Cdd:COG4717 185 QLSLATEEELQDL-------AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAA 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 326 SMTSAESQTSEMDFLEPDPEMQLLRQQLRDAEEQMhgMKNKCQELCCELEELQHHRQVSEEEQRRLQRELKcaqneVLRF 405
Cdd:COG4717 258 LLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLL--LAREKASLGKEAEELQALPALEELEEEELEELLA-----ALGL 330
|
330 340 350
....*....|....*....|....*....|....*....
gi 966935549 406 QTSHSVTQCDTLLSRLTELQEKYKASQKEMGQLQMEQCE 444
Cdd:COG4717 331 PPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
138-524 |
2.37e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 2.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 138 ELQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEIS-------------------LLEHEKESE-----LKEIEREL 193
Cdd:TIGR04523 211 QKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISntqtqlnqlkdeqnkikkqLSEKQKELEqnnkkIKELEKQL 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 194 HLAQAEIQSLR-QAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKSSEPSSslglsdysgL 272
Cdd:TIGR04523 291 NQLKSEISDLNnQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSE---------K 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 273 QEELQELRERYHFLNEEYRALQESNSSLTGQLADLESE-RTQRATERWLESQTlsmtsaesQTSEMDFLEPDPEMQLLRQ 351
Cdd:TIGR04523 362 QRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKiQNQEKLNQQKDEQI--------KKLQQEKELLEKEIERLKE 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 352 QLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQtshsvTQCDTLLSRLTELQEKYKAS 431
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQ-----KELKSKEKELKKLNEEKKEL 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 432 QKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTLPLPKSGLLLKSQELLTKLedlcelqllyQGMQEEQKKLIQNQD 511
Cdd:TIGR04523 509 EEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEI----------DEKNKEIEELKQTQK 578
|
410
....*....|...
gi 966935549 512 CVLKEQLEIHEEL 524
Cdd:TIGR04523 579 SLKKKQEEKQELI 591
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
101-296 |
2.71e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.03 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 101 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGL-------------LEDERLASAQQAEVFTKQIQQLQGE 167
Cdd:PRK02224 215 LAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLeaeiedlretiaeTEREREELAEEVRDLRERLEELEEE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 168 LRSLREE----------ISLLEHEKESELKEIERELHLAQAEIQSLRQAAE---DSATEHESDIASLQEDLCRMQNELED 234
Cdd:PRK02224 295 RDDLLAEaglddadaeaVEARREELEDRDEELRDRLEECRVAAQAHNEEAEslrEDADDLEERAEELREEAAELESELEE 374
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966935549 235 MERIRGDYEMEIASLRAEMEMKSSE----PSSSLGLSDYSG-LQEELQELRERYHFLNEEYRALQES 296
Cdd:PRK02224 375 AREAVEDRREEIEELEEEIEELRERfgdaPVDLGNAEDFLEeLREERDELREREAELEATLRTARER 441
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
107-263 |
2.90e-04 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 43.98 E-value: 2.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 107 ELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEHEKESEL 186
Cdd:pfam09787 62 EIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELRRSKATLQSRI 141
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966935549 187 KEIERELHLAQAEIQSlRQAAEDSATEHESDIASLQEDLCRMQNELEDM--ERIRGDYEMEiaslRAEMEMKSSEPSSS 263
Cdd:pfam09787 142 KDREAEIEKLRNQLTS-KSQSSSSQSELENRLHQLTETLIQKQTMLEALstEKNSLVLQLE----RMEQQIKELQGEGS 215
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
104-855 |
2.91e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 104 TETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLED-----ERLASAQQAEVfTKQIQQLQGELRSLREEISll 178
Cdd:TIGR02169 235 LERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEElnkkiKDLGEEEQLRV-KEKIGELEAEIASLERSIA-- 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 179 ehEKESELKEIERELHLAQAEIQSLRQAAEDSATEHES----------DIASLQEDLCRMQNELEDMERIRGDYEMEIAS 248
Cdd:TIGR02169 312 --EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEerkrrdklteEYAELKEELEDLRAELEEVDKEFAETRDELKD 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 249 LRAEMEMKSSEPSSSLGLSDYsgLQEELQELRERYHFLNEEYRALQEsnssltgQLADLESERTQRATERWLESQTLSMT 328
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDR--LQEELQRLSEELADLNAAIAGIEA-------KINELEEEKEDKALEIKKQEWKLEQL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 329 SAEsqtsemdflepdpeMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQrelkcAQNEVLRfqts 408
Cdd:TIGR02169 461 AAD--------------LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR-----AVEEVLK---- 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 409 HSVTQCDTLLSRLTELQEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLT-LPLPKsglLLKSQELLTKLE 487
Cdd:TIGR02169 518 ASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAGRATfLPLNK---MRDERRDLSILS 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 488 DLCELQLLYQGMQEEQKklIQN------QDCVLKEQLEIHEELR-RFKESHFQ-EVLENPDDSKLAKSSKYNRNKQSKLL 559
Cdd:TIGR02169 595 EDGVIGFAVDLVEFDPK--YEPafkyvfGDTLVVEDIEAARRLMgKYRMVTLEgELFEKSGAMTGGSRAPRGGILFSRSE 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 560 MEQMQALQVLYEASQAEQELLQQEQGRLLEERKRLQADLQLCLEEMQLLQVQSPSIKMSLEsygksygsmapsnencrkT 639
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE------------------K 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 640 YDTTVDDNESYNKSYASTQTSSESFLKSYDSSTSASEAygksycttsdSSITYKKSYGSTSSSDTcqKSFVSSCTDEEPA 719
Cdd:TIGR02169 735 LKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE----------DLHKLEEALNDLEARLS--HSRIPEIQAELSK 802
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 720 EPEDMEHFEEMVAKVLIKLQAVQAMYQISQEEHSQLQEQMEKLLAKQKDLKEELDACEREFKECMECLEKPVAPQND--- 796
Cdd:TIGR02169 803 LEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDles 882
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966935549 797 -----KNEIKELQTKLRELQLQYQASMDEQGRLLVVQEQLEGQLQCCQEELRQLREKRPSVVKE 855
Cdd:TIGR02169 883 rlgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
110-524 |
4.61e-04 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.27 E-value: 4.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 110 ELRAQvlqLVAELEETRELAGQHEDDSLElQGLLEderlASAQQAEVfTKQIQQLQGELRSLREEISLLEHEKEselkEI 189
Cdd:PRK10929 83 ELRQQ---LNNERDEPRSVPPNMSTDALE-QEILQ----VSSQLLEK-SRQAQQEQDRAREISDSLSQLPQQQT----EA 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 190 ERELHLAQAEIQSLRQAaedSATEHESDIASLQEDLCRMQ---NELEdMERIRGDYEMEIASLRAEMEMKSSEPssslgl 266
Cdd:PRK10929 150 RRQLNEIERRLQTLGTP---NTPLAQAQLTALQAESAALKalvDELE-LAQLSANNRQELARLRSELAKKRSQQ------ 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 267 sdysgLQEELQELRERYHFL--NEEYRALqESNSSLTGQLADL-ESERTQRATERWLeSQTLSmtsaeSQTSEMDflepd 343
Cdd:PRK10929 220 -----LDAYLQALRNQLNSQrqREAERAL-ESTELLAEQSGDLpKSIVAQFKINREL-SQALN-----QQAQRMD----- 282
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 344 pemqLLRQQLRDAEEQMHGMKNKcqelcceLEELQHHRQ---VSEeeqrrlqrelkcAQNEVLRFQtshsvtqcdtlLSR 420
Cdd:PRK10929 283 ----LIASQQRQAASQTLQVRQA-------LNTLREQSQwlgVSN------------ALGEALRAQ-----------VAR 328
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 421 LTELqEKYKASQKEMGQLQMEQcelledqrrmqeeqgqlqeelhrltlplpksgllLKSQELLTKLedlcelQLLYQGMQ 500
Cdd:PRK10929 329 LPEM-PKPQQLDTEMAQLRVQR----------------------------------LRYEDLLNKQ------PQLRQIRQ 367
|
410 420
....*....|....*....|....
gi 966935549 501 EEQKKLIQNQDCVLKEQLEIHEEL 524
Cdd:PRK10929 368 ADGQPLTAEQNRILDAQLRTQREL 391
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
114-448 |
5.25e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.34 E-value: 5.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 114 QVLQLVAELEETRELAGQHEDDSLELQGLLED-ERLASAQQAEVFTKQ--IQQLQGELRSLREEISLLEHEKEsELKEIE 190
Cdd:pfam15921 462 KVSSLTAQLESTKEMLRKVVEELTAKKMTLESsERTVSDLTASLQEKEraIEATNAEITKLRSRVDLKLQELQ-HLKNEG 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 191 RELHLAQAEIQSLRQaaedSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKSSEPSSSLGLSDYS 270
Cdd:pfam15921 541 DHLRNVQTECEALKL----QMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKK 616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 271 glQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATErwlesqtlsmtsAESQTSEMDFLEPDPEmqLLR 350
Cdd:pfam15921 617 --DAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNE------------VKTSRNELNSLSEDYE--VLK 680
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 351 QQLRDAEEQMHGMKNKCQ-ELCCELEELQHHRQVSEEEQRRLQRELKCAQNevLRFQTSHSVTQCDTLLSRLTELQEKYK 429
Cdd:pfam15921 681 RNFRNKSEEMETTTNKLKmQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMG--MQKQITAKRGQIDALQSKIQFLEEAMT 758
|
330
....*....|....*....
gi 966935549 430 ASQKEMGQLQMEQCELLED 448
Cdd:pfam15921 759 NANKEKHFLKEEKNKLSQE 777
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
101-252 |
6.66e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 6.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 101 LSLTETELEELRAQVLQLVAELEETRELAGQH-------EDDSLELQGLLEDERLASA-QQAEVFTKQIQQLQGELRSLR 172
Cdd:COG3883 60 LEALQAEIDKLQAEIAEAEAEIEERREELGERaralyrsGGSVSYLDVLLGSESFSDFlDRLSALSKIADADADLLEELK 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 173 EEISLLEhEKESELKEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAE 252
Cdd:COG3883 140 ADKAELE-AKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAA 218
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
107-626 |
8.68e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.51 E-value: 8.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 107 ELEELRAQVLQLVAELE-ETRELAGQHEDDSLELQGLLE-DERLASAQqaevftKQIQQLQGELRSLREEISLLEhEKES 184
Cdd:PRK03918 197 EKEKELEEVLREINEISsELPELREELEKLEKEVKELEElKEEIEELE------KELESLEGSKRKLEEKIRELE-ERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 185 ELKEIERELHLAQAEIQSLRQAAEDSATehesdiasLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEmKSSEPSSSL 264
Cdd:PRK03918 270 ELKKEIEELEEKVKELKELKEKAEEYIK--------LSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-ELEEKEERL 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 265 GlsdysGLQEELQELRERYHFLNEEYRALQESNSsLTGQLADLESERTQRATERWL-ESQTLSMTSAESQTSEMDFLEPD 343
Cdd:PRK03918 341 E-----ELKKKLKELEKRLEELEERHELYEEAKA-KKEELERLKKRLTGLTPEKLEkELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 344 PEMQLLRQQLRDAEEQMHGMKNKCQELCCELEElqHHRqvsEEEQRRLQRELKCAQNEVLRFQTSHSvtqcdTLLSRLTE 423
Cdd:PRK03918 415 GELKKEIKELKKAIEELKKAKGKCPVCGRELTE--EHR---KELLEEYTAELKRIEKELKEIEEKER-----KLRKELRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 424 LqEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTLPLPKSGLLLKSqELLTKLEDLCELQLLYQGMQEEQ 503
Cdd:PRK03918 485 L-EKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG-EIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 504 KKLiqnqDCVLKEQLEIHEELRRFKESHFQEvlenpddsklaksskynrnkqsklLMEQMQALQVLY----EASQAEQEL 579
Cdd:PRK03918 563 KKL----DELEEELAELLKELEELGFESVEE------------------------LEERLKELEPFYneylELKDAEKEL 614
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 966935549 580 lqqeqGRLLEERKRLQADLQLCLEEMQLLQVQSPSIKMSLESYGKSY 626
Cdd:PRK03918 615 -----EREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKY 656
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
272-451 |
1.09e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 272 LQEELQELRERYHFLNeeyraLQESNSSLTGQLADLESERTQ-RATERWLESQTLSMTSA-ESQTSEMDFLEPDPEMQLL 349
Cdd:COG3206 194 AEAALEEFRQKNGLVD-----LSEEAKLLLQQLSELESQLAEaRAELAEAEARLAALRAQlGSGPDALPELLQSPVIQQL 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 350 RQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEE-QRRLQRELKCAQNEVlrfqtshsvtqcDTLLSRLTELQEKY 428
Cdd:COG3206 269 RAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQlQQEAQRILASLEAEL------------EALQAREASLQAQL 336
|
170 180
....*....|....*....|...
gi 966935549 429 KASQKEMGQLQMEQCELLEDQRR 451
Cdd:COG3206 337 AQLEARLAELPELEAELRRLERE 359
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
101-426 |
1.19e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.85 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 101 LSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLE- 179
Cdd:pfam01576 150 LSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQa 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 180 --HEKESELKEIERELHLAQAEI---QSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEME 254
Cdd:pfam01576 230 qiAELRAQLAKKEEELQAALARLeeeTAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 255 mkssepssslGLSDYSGLQEELQELRERYhfLNEEYRALQESNSSLTGQLADLESERTQRATE--RWLESQTLSMTSAES 332
Cdd:pfam01576 310 ----------DTLDTTAAQQELRSKREQE--VTELKKALEEETRSHEAQLQEMRQKHTQALEEltEQLEQAKRNKANLEK 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 333 --QTSEMDFLEPDPEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQRRLQRELKCAQN--EVLRFQTS 408
Cdd:pfam01576 378 akQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSllNEAEGKNI 457
|
330
....*....|....*...
gi 966935549 409 HSVTQCDTLLSRLTELQE 426
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQE 475
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
185-317 |
1.24e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.83 E-value: 1.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 185 ELKEIERELhlaqAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEMKSSEPSSSL 264
Cdd:COG1579 11 DLQELDSEL----DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 966935549 265 GLSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATE 317
Cdd:COG1579 87 NNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAE 139
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
104-528 |
1.56e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.73 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 104 TETELEE----LRAQVLQLVAELEETRELAGQHEDDSLELQGLLEderlASAQQAEVFTKQIQQLQGELRSLREEISlle 179
Cdd:TIGR00606 689 TEAELQEfisdLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAP----GRQSIIDLKEKEIPELRNKLQKVNRDIQ--- 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 180 hEKESELKEIERELHLAQAEiqslrqaaEDSATEHESDIASLQedlcRMQNELEDMERirgdyemeiaslraEMEMKSSE 259
Cdd:TIGR00606 762 -RLKNDIEEQETLLGTIMPE--------EESAKVCLTDVTIME----RFQMELKDVER--------------KIAQQAAK 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 260 PSSSLGLSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERTQRATERWlesqTLSMTSAESQTSEMDF 339
Cdd:TIGR00606 815 LQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL----QIGTNLQRRQQFEEQL 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 340 LEPDPEMQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRqvsEEEQRRLQRELKCAQNEVLrfQTSHSVTQCDTLLS 419
Cdd:TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK---ETSNKKAQDKVNDIKEKVK--NIHGYMKDIENKIQ 965
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 420 RLTELQEKYKASQKEMGQLQMEQCE-----LLEDQRRMQEEQGQLQEELH----RLTLPLPKSGLLLKSQELLTKLEDLC 490
Cdd:TIGR00606 966 DGKDDYLKQKETELNTVNAQLEECEkhqekINEDMRLMRQDIDTQKIQERwlqdNLTLRKRENELKEVEEELKQHLKEMG 1045
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 966935549 491 ELQLL-----YQGMQEEQKKLIQNQDCVLKEQLEIHEELRRFK 528
Cdd:TIGR00606 1046 QMQVLqmkqeHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFK 1088
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
104-209 |
1.94e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 104 TETELEELRAQVLQLvaeleETRELAGQHEDDSLELQGLLEDERLASAQQaevFTKQIQQLQGELRSLREEISLLEHEKE 183
Cdd:PRK04863 584 LRQQLEQLQARIQRL-----AARAPAWLAAQDALARLREQSGEEFEDSQD---VTEYMQQLLERERELTVERDELAARKQ 655
|
90 100
....*....|....*....|....*.
gi 966935549 184 SELKEIERELHLAQAEIQSLRQAAED 209
Cdd:PRK04863 656 ALDEEIERLSQPGGSEDPRLNALAER 681
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
737-848 |
2.03e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 737 KLQAVQAMYQISQEEHSQLQEQMEKLLAKQKDLKEELDACEREFKECMECLEKPVAPQ-------------NDKNEIKEL 803
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEReiaeleaelerldASSDDLAAL 690
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 966935549 804 QTKLRELQLQYQASMDEQGRLLVVQEQLEGQLQCCQEELRQLREK 848
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDR 735
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
107-591 |
3.04e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 3.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 107 ELEELRAQVLQLVAELEETRELAGQHEDDSLElQGLLEDERLASAQ-QAEVFTKQIQQLQGELRSLREEISLLEHEKESE 185
Cdd:pfam12128 309 ELSAADAAVAKDRSELEALEDQHGAFLDADIE-TAAADQEQLPSWQsELENLEERLKALTGKHQDVTAKYNRRRSKIKEQ 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 186 LKEIERELHLAQAEIqslRQAAEDSATEHESDIASLQEDLcRMQNELEDMERIRGDYEMEIASLRAEMEMKSSEPSSSLg 265
Cdd:pfam12128 388 NNRDIAGIKDKLAKI---REARDRQLAVAEDDLQALESEL-REQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPEL- 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 266 LSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGqLADLESERTQRATERWLESQtlsmtSAESQTSEMDFLEPDPE 345
Cdd:pfam12128 463 LLQLENFDERIERAREEQEAANAEVERLQSELRQARK-RRDQASEALRQASRRLEERQ-----SALDELELQLFPQAGTL 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 346 MQLLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQ--------RRLQRELKCAQNEVLRfqtshsvTQCDTL 417
Cdd:pfam12128 537 LHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNlygvkldlKRIDVPEWAASEEELR-------ERLDKA 609
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 418 LSRLTELQEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTlpLPKSGLLLKSQELLTKLEDLCELQLlyQ 497
Cdd:pfam12128 610 EEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLF--DEKQSEKDKKNKALAERKDSANERL--N 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 498 GMQEEQKKLIQNQDCVLKEQLEIHEELRRFKESHFQEVLENPDDsKLAKSSkynrnkqskllmeqmQALQVLYEASQAEQ 577
Cdd:pfam12128 686 SLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDA-QLALLK---------------AAIAARRSGAKAEL 749
|
490
....*....|....
gi 966935549 578 ELLQQEQGRLLEER 591
Cdd:pfam12128 750 KALETWYKRDLASL 763
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
349-606 |
3.18e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 3.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 349 LRQQLRDAEEQMHGMknkcqelccELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHSvtqcdTLLSRLTELQEKY 428
Cdd:TIGR02168 218 LKAELRELELALLVL---------RLEELREELEELQEELKEAEEELEELTAELQELEEKLE-----ELRLEVSELEEEI 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 429 KASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTLPLPKSG-LLLKSQELLTKLED-LCELQLLYQGMQEEQKKL 506
Cdd:TIGR02168 284 EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELEsKLDELAEELAELEEkLEELKEELESLEAELEEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 507 IQNQDCVLKEQLEIHEELRRFKESHFQEVLEnpdDSKLAKSSKYNRNKQSKLLMEQMQALQVLYEASQAEQELLQQEQGR 586
Cdd:TIGR02168 364 EAELEELESRLEELEEQLETLRSKVAQLELQ---IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260
....*....|....*....|
gi 966935549 587 LLEERKRLQADLQLCLEEMQ 606
Cdd:TIGR02168 441 ELEELEEELEELQEELERLE 460
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
71-611 |
3.68e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 71 EEEEEEVEEEEEQVQKGGSVGSLSVNKHRGLSLTETELEELRAQVLQLVAELEETRELAGQHEDDSLELQGLLEDERLAS 150
Cdd:pfam02463 296 EELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEEL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 151 AQQAEVFTKQIQQLQGELRSLREEISLLEHEKESELKEIERELHLAQAEIQSLrqAAEDSATEHESDIASLQEDLCRM-Q 229
Cdd:pfam02463 376 LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEE--LEILEEEEESIELKQGKLTEEKEeL 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 230 NELEDMERIRGDYEMEIASLRAEMEMKSSEPSSSLGLSDYSGLQEELQELRERYhfLNEEYRALQESNSSLTGQLADLES 309
Cdd:pfam02463 454 EKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARS--GLKVLLALIKDGVGGRIISAHGRL 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 310 ERTQRATERWLESQTLSMTSAESQTSEMDFlepdpemqlLRQQLRDAEEQMHGMKNKCQELCCELEELQHHRQVSEEEQR 389
Cdd:pfam02463 532 GDLGVAVENYKVAISTAVIVEVSATADEVE---------ERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPI 602
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 390 RLQRELKCAQNEVLRFQTSHSVTQCDTLLSRLTELQEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELhrltlp 469
Cdd:pfam02463 603 LNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELL------ 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 470 lpksgLLLKSQELLTKLEDLCELQLLYQGMQEEQKKLIQNQDCVLKEQLEIHEELRRFKESHFQEVLENPDDSKLAKSSK 549
Cdd:pfam02463 677 -----EIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEE 751
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966935549 550 YNRNKQSKLLMEQMQALQVLYEASQAEQELLQQEQGRLLEERKRLQADLQLCLEEMQLLQVQ 611
Cdd:pfam02463 752 EEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEE 813
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
96-452 |
4.34e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 4.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 96 NKHRGLSLTETELE-ELRAQVLQLVAE---LEETRELAGQHEDDSLELQGLLE--DERLASAQQAEVFTKQIQQLQGELR 169
Cdd:PRK04863 279 NERRVHLEEALELRrELYTSRRQLAAEqyrLVEMARELAELNEAESDLEQDYQaaSDHLNLVQTALRQQEKIERYQADLE 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 170 SLREEislLEHEKEselkeierelhlAQAEIQSLRQAAEDSATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASL 249
Cdd:PRK04863 359 ELEER---LEEQNE------------VVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQAL 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 250 RaemEMKSSEPSSSLGLSDYSGLQEELQ--------ELRERYHFLN------EEYRALQESNSSLTGQLADLESERTQRA 315
Cdd:PRK04863 424 E---RAKQLCGLPDLTADNAEDWLEEFQakeqeateELLSLEQKLSvaqaahSQFEQAYQLVRKIAGEVSRSEAWDVARE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 316 TERWLESQTLSMTSAESQTSEMDFLEPDPEMQLLRQQLRDAEEQMHGMKNKCQElccELEELQhhrqvSEEEQRRLQREL 395
Cdd:PRK04863 501 LLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDED---ELEQLQ-----EELEARLESLSE 572
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 966935549 396 KCAQNEVLRFQTSHSVTQCDTLLSRLTELQEKYKASQKEMGQLQmEQC-ELLEDQRRM 452
Cdd:PRK04863 573 SVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLR-EQSgEEFEDSQDV 629
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
209-439 |
4.98e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 4.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 209 DSATEHESDIASLQEDLCRMQNELEDMERIRGDYEmEIASLRAEMEMKSSEpsssLGLSDYSGLQEELQELRERYHFLNE 288
Cdd:COG4913 228 DALVEHFDDLERAHEALEDAREQIELLEPIRELAE-RYAAARERLAELEYL----RAALRLWFAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 289 EYRALQESNSSLTGQLADLESERtQRATERWLESQTlsmtsaesqtsemdflepdPEMQLLRQQLRDAEEQMHGMKNKCQ 368
Cdd:COG4913 303 ELARLEAELERLEARLDALREEL-DELEAQIRGNGG-------------------DRLEQLEREIERLERELEERERRRA 362
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966935549 369 ELCCELEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHSVTQcDTLLSRLTELQEKYKASQKEMGQLQ 439
Cdd:COG4913 363 RLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAL-AEAEAALRDLRRELRELEAEIASLE 432
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
105-376 |
6.33e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 105 ETELEELRAQVLQLVAELE----ETRELAGQHEDDSLELQGLLEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEH 180
Cdd:pfam15921 259 ELLLQQHQDRIEQLISEHEveitGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKR 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 181 EKESELKEIERELHLAQAEIQSLRQAAEDSATEH---ESDIASLQEDLCRMQNEL---------------------EDME 236
Cdd:pfam15921 339 MYEDKIEELEKQLVLANSELTEARTERDQFSQESgnlDDQLQKLLADLHKREKELslekeqnkrlwdrdtgnsitiDHLR 418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 237 RIRGDYEMEIASLRAEMEMKSSEPSSSL--GLSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLE-SERTQ 313
Cdd:pfam15921 419 RELDDRNMEVQRLEALLKAMKSECQGQMerQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLEsSERTV 498
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966935549 314 RATERWLESQTLSMtsaESQTSEMDFLEPDPEMQLLR-QQLRDAEEQMHGMKNKCQELCCELEE 376
Cdd:pfam15921 499 SDLTASLQEKERAI---EATNAEITKLRSRVDLKLQElQHLKNEGDHLRNVQTECEALKLQMAE 559
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
109-295 |
6.41e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 109 EELRAQV--LQLVAELEETRELAGQHEDDSLELQGLLEDERlasaQQAEVFTKQIQQLQGELRSLREEISLLEHEKESEL 186
Cdd:PRK11281 39 ADVQAQLdaLNKQKLLEAEDKLVQQDLEQTLALLDKIDRQK----EETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 187 KEIERELHLAQ-----AEIQSLRQAAEDSATEHESDIASLQEDLCRMQNEL-EDMERI---------------------R 239
Cdd:PRK11281 115 RETLSTLSLRQlesrlAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALyANSQRLqqirnllkggkvggkalrpsqR 194
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 966935549 240 GDYEMEIASLRAEMEMKSSEPSSSLGLSDYsgLQEELQELRERYHFLNEEYRALQE 295
Cdd:PRK11281 195 VLLQAEQALLNAQNDLQRKSLEGNTQLQDL--LQKQRDYLTARIQRLEHQLQLLQE 248
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
159-314 |
6.44e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.43 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 159 KQIQQLQGELRSLREEISLLEHEKESELKEIERE----LHLAQAEIQSLRQAAED--SATEHESDIASLQEDLCRMQNEL 232
Cdd:PRK03918 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPFYNEylELKDAEKELEREEKELKKLEEEL 628
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 233 EDMERIRGDYEMEIASLRAEMEMKSSEPSSslglSDYSGLQEELQELRERYHFLNEEYRALQESNSSLTGQLADLESERT 312
Cdd:PRK03918 629 DKAFEELAETEKRLEELRKELEELEKKYSE----EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
..
gi 966935549 313 QR 314
Cdd:PRK03918 705 ER 706
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
110-623 |
8.38e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 40.34 E-value: 8.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 110 ELRAQVLQLVAELEETRELAGQHEDDSLELQGLlEDERLASAQQAEVFTKQIQQLQGELRSLREEISLLEHEKESELKEI 189
Cdd:TIGR00618 287 NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSK-MRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVAT 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 190 ERELHLAQ--AEIQSLRQAAED--SATEHESDIASLQEDLCRMQNELEDMERIRGDYEMEIASLRAEMEmkssePSSSLG 265
Cdd:TIGR00618 366 SIREISCQqhTLTQHIHTLQQQktTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQE-----LQQRYA 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 266 LSDYSGLQEELQELRERYHFLNEEYRALQEsnssLTGQLADLESERTQRATERWLESQTLSMTSAESQTSEMDFLEPDPE 345
Cdd:TIGR00618 441 ELCAAAITCTAQCEKLEKIHLQESAQSLKE----REQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPA 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 346 MQLLR---------QQLRDAEEQMHGMKNKCQELCceLEELQHHRQVSEEEQRRLQRELKCAQNEVLRFQTSHSVTQCDT 416
Cdd:TIGR00618 517 RQDIDnpgpltrrmQRGEQTYAQLETSEEDVYHQL--TSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITV 594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 417 LLSRLTELQEKYKASQKEMGQLQMEQCELLEDQRRMQEEQGQLQEELHRLTLPLPKSGLLLKSQELLTKLEDLCELQLLY 496
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKEL 674
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 497 QGMQEEQKKLIQN---QDCVLKEQLEIHEELRRFKESHFQEVLENPDDSKLAKSSkynrnKQSKLLMEQMQALQVLYEAS 573
Cdd:TIGR00618 675 LASRQLALQKMQSekeQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSS-----LGSDLAAREDALNQSLKELM 749
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 966935549 574 QAEQELLQQEQGRLLEERKRLQADLQLCLEEMQLLQVQSPSIKMSLESYG 623
Cdd:TIGR00618 750 HQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTH 799
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
106-224 |
9.50e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.06 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966935549 106 TELEELRAQVLQLVAELEEtrelagqheddslelqgLLEDERLASAQQAEVFTKQIQQLQGELRSLREEislLEHEKE-- 183
Cdd:COG0542 411 EELDELERRLEQLEIEKEA-----------------LKKEQDEASFERLAELRDELAELEEELEALKAR---WEAEKEli 470
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 966935549 184 SELKEIERELHLAQAEIQSLRQAAEDSATEHESDIASLQED 224
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREE 511
|
|
| |
