|
Name |
Accession |
Description |
Interval |
E-value |
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
54-716 |
0e+00 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 682.24 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 54 RAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQ 133
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 134 CQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQA 213
Cdd:pfam05557 81 KKKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 214 SQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESMHLREMRETNGLLQEELEGLQRKLGRQ 293
Cdd:pfam05557 161 QQSSLAEAEQRIKELEFEIQSQEQDSEIVKNSKSELARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLERE 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 294 EKMQETLVGLELENERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEEL 373
Cdd:pfam05557 241 EKYREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQEL 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 374 RQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTSAEYSPQLTRRMREAEDMVQKVHSHSAEME 453
Cdd:pfam05557 321 AQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAEDMTQKMQAHNEEME 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 454 AQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSflFSREEVDTLRLKVEELEGERRRLEEEKRMLEAQLERRVLQG 533
Cdd:pfam05557 401 AQLSVAEEELGGYKQQAQTLERELQALRQQESLADPS--YSKEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQG 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 534 DYDQSRTKVLHMSLNPASVARQRLREDHSQLQAECERLRGLLRAMERGGTVPTDLEAAAASLpSSKEVAELKKQVESAEL 613
Cdd:pfam05557 479 DYDPKKTKVLHLSMNPAAEAYQQRKNQLEKLQAEIERLKRLLKKLEDDLEQVLRLPETTSTM-NFKEVLDLRKELESAEL 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 614 KNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVH 693
Cdd:pfam05557 558 KNQRLKEVFQAKIQEFRDVCYMLTGYQIDITTNSQYRLTSMYAEHPDDYLLFKLSGSNGSTMQLLETPFSRTLEPLIDLH 637
|
650 660
....*....|....*....|...
gi 966932011 694 LRHQDSIPAFLSSLTLELFSRQT 716
Cdd:pfam05557 638 LAAQKSIPAFLSALTLELFSRQT 660
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
65-618 |
1.89e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 80.75 E-value: 1.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 65 IQVEREKMQMELSHKRARvELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKR 144
Cdd:COG1196 218 LKEELKELEAELLLLKLR-ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 145 LREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQasQEARADHEQQ 224
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE--EALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 225 IKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESMHLREMRETngLLQEELEGLQRKLGRQEKMQETLVGLE 304
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE--LEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 305 LENERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQRELALkdKNSAVTSSARGLEKARQQLQEELRQVSGQLLEER 384
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLL--LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLI 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 385 KKRETHEALA----------------RRLQKRVLLLTKERDGMRAILGSYDSELTSAEYSPQLTRRMREAEDMVQkvhSH 448
Cdd:COG1196 531 GVEAAYEAALeaalaaalqnivveddEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA---SD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 449 SAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRLKVEELEGERRRLEEEKRMLEAQLER 528
Cdd:COG1196 608 LREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAER 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 529 RVLQGDYDQSRTKVLHMSLNPASVARQRLREDHSQLQAECERLRGLLR--AMERGGTVPTDLEAAAASLPSSKEVAELKK 606
Cdd:COG1196 688 LAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREelLEELLEEEELLEEEALEELPEPPDLEELER 767
|
570
....*....|..
gi 966932011 607 QVESAELKNQRL 618
Cdd:COG1196 768 ELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
41-579 |
5.38e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 79.21 E-value: 5.38e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 41 LQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYEREvdrnQELLTRIRQLQEREAGA 120
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE----YELLAELARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 121 EEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKK 200
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 201 WQEANQKIQELQASQEARADHEQQIKD-----LEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESMHLREMRET 275
Cdd:COG1196 388 LLEALRAAAELAAQLEELEEAEEALLErlerlEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 276 NGLLQEELE-GLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQR-----ELALK 349
Cdd:COG1196 468 LLEEAALLEaALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEaaleaALAAA 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 350 DKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTSAEYSP 429
Cdd:COG1196 548 LQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 430 QLTRRMREAEDMV---QKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRLKVE 506
Cdd:COG1196 628 VAARLEAALRRAVtlaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966932011 507 ELEGERRRLEEEKRMLEAQLERRVLQGDYDQSRTKVLHMSLNPASVARQRLREDHSQLQAECERLRGLLRAME 579
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
40-353 |
5.10e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 5.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 40 SLQMQYQQSMQLEERAEQIRSKSHLIQVEREKmqmelSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAG 119
Cdd:TIGR02168 204 SLERQAEKAERYKELKAELRELELALLVLRLE-----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 120 AEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHK 199
Cdd:TIGR02168 279 LEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 200 KWQEANQKIQEL-QASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSEL----VRLPRLERELKQLREEsMHLREMRE 274
Cdd:TIGR02168 359 ELEELEAELEELeSRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLerleDRRERLQQEIEELLKK-LEEAELKE 437
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966932011 275 TNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNS 353
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQS 516
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
94-488 |
6.10e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 62.77 E-value: 6.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 94 RNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLdaasKRLREKEDSLAQAGETISALKGRISELQWSV 173
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL----PELREELEKLEKEVKELEELKEEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 174 MDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQASQEARADHEQQIKDLEQklslqeqdaaIVKNMKSELVRLP 253
Cdd:PRK03918 248 ESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEE----------YLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 254 RLERELKQLREESMHLREMRETNGLLQEELEGLQRKLGRQEKMQETLvglelenERLLAKLQSWERLDqtTGLSIRTPED 333
Cdd:PRK03918 318 RLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELY-------EEAKAKKEELERLK--KRLTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 334 LSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQ---EELRQVSG-------QLLEERKKR--ETHEALARRLQKRV 401
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKkaiEELKKAKGkcpvcgrELTEEHRKEllEEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 402 LLLTKERDGMRAILGSYDSELTSAEYSPQLTRRMREAEDMVQKVHSHSAEmeaQLSQALEELGGQKQRADMLEMELKMLK 481
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLE---ELEKKAEEYEKLKEKLIKLKGEIKSLK 545
|
....*..
gi 966932011 482 SQSSSAE 488
Cdd:PRK03918 546 KELEKLE 552
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
50-314 |
1.93e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 1.93e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAAStsarnyerevdrnQELLTRIRQLQEREAGAEEKMQEQLE 129
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL-------------EELSRQISALRKDLARLEAEVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 130 RNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHkkwQEANQKIQ 209
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN---EEAANLRE 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 210 ELQASQEARADHEQQIKDLEQKL-SLQEQDAAIVKNMKSELVRLPRLERELKQL------REESMHLR---------EMR 273
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIeELSEDIESLAAEIEELEELIEELESELEALlnerasLEEALALLrseleelseELR 904
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 966932011 274 ETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKL 314
Cdd:TIGR02168 905 ELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
152-498 |
2.78e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 2.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 152 LAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQ-EANQKIQELQASQEARADHEQQIKDLEQ 230
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 231 KLS-LQEQDAAIVKNMKSELVRLPRLERELKQLREESMhlREMRETNGLLQEELEGLQR----KLGRQEKMQETLVGLEL 305
Cdd:TIGR02169 252 ELEkLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQ--LRVKEKIGELEAEIASLERsiaeKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 306 ENERLLAKLQSWErldqttglsiRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERK 385
Cdd:TIGR02169 330 EIDKLLAEIEELE----------REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 386 KRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTsaeyspQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGG 465
Cdd:TIGR02169 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN------ELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYD 473
|
330 340 350
....*....|....*....|....*....|...
gi 966932011 466 QKQRADMLEMELKMLKSQSSSAEQSFLFSREEV 498
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
172-505 |
2.74e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 2.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 172 SVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQasqEARADHEQQIKDLEQKLSLQEQDAAIVKN-MKSELV 250
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELE---EELEQLRKELEELSRQISALRKDLARLEAeVEQLEE 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 251 RLPRLERELKQLREESMHLREMRETNGLLQEELEGLQRKLgrQEKMQETLVGLELENERLLAKLQSWERLDQTTGLSIRT 330
Cdd:TIGR02168 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL--EAQIEQLKEELKALREALDELRAELTLLNEEAANLRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 331 PEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDG 410
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRE 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 411 MRAILGsydseltsaeyspQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELggqkqrADMLEMELKMLKSQSSSAEQS 490
Cdd:TIGR02168 906 LESKRS-------------ELRRELEELREKLAQLELRLEGLEVRIDNLQERL------SEEYSLTLEEAEALENKIEDD 966
|
330
....*....|....*
gi 966932011 491 FLFSREEVDTLRLKV 505
Cdd:TIGR02168 967 EEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
46-631 |
3.22e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 3.22e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 46 QQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRA-RVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKM 124
Cdd:TIGR02168 330 SKLDELAEELAELEEKLEELKEELESLEAELEELEAeLEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL 409
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 125 QEQLERNRQCQQNLDAASKRLREKEdsLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQEA 204
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAE--LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 205 NQKIQELQASQEARADHEQQIKDLEQKLS--------LQEQ-----------DAAIVKNMKSELVR-LPRLERELKQLRE 264
Cdd:TIGR02168 488 QARLDSLERLQENLEGFSEGVKALLKNQSglsgilgvLSELisvdegyeaaiEAALGGRLQAVVVEnLNAAKKAIAFLKQ 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 265 ESMHLREMRETNGLLQEELEGLQRK-LGRQEKMQETLVGLELENERLLAKLQSW-------ERLDQTTGLSIRTPEDlSR 336
Cdd:TIGR02168 568 NELGRVTFLPLDSIKGTEIQGNDREiLKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPG-YR 646
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 337 FVV-------------------------------ELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERK 385
Cdd:TIGR02168 647 IVTldgdlvrpggvitggsaktnssilerrreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR 726
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 386 KRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTSAEyspqltRRMREAEDMVQKVHSHSAEMEAQLSQALEELGG 465
Cdd:TIGR02168 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE------ERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 466 QKQRADMLEMEL--------------KMLKSQSSSAEQSFLFSREEVDTLRLKVEELEGERRRLEEEKRMLEAQLE---- 527
Cdd:TIGR02168 801 LREALDELRAELtllneeaanlrerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEalln 880
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 528 --------RRVLQGDYDQSRTKVLHMS--LNPASVARQRLREDHSQLQAECERLRGLL-----RAMERGGTVPTDLEAAA 592
Cdd:TIGR02168 881 erasleeaLALLRSELEELSEELRELEskRSELRRELEELREKLAQLELRLEGLEVRIdnlqeRLSEEYSLTLEEAEALE 960
|
650 660 670
....*....|....*....|....*....|....*....
gi 966932011 593 ASLPSskEVAELKKQVESAELKNQRLKEVFQTKIQEFRK 631
Cdd:TIGR02168 961 NKIED--DEEEARRRLKRLENKIKELGPVNLAAIEEYEE 997
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
41-320 |
5.88e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 5.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 41 LQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERA-------------ASTSARNYEREVDRNQELL 107
Cdd:TIGR02169 725 IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEdlhkleealndleARLSHSRIPEIQAELSKLE 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 108 TRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEK 187
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRL 884
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 188 QELQEQLDLQHKKWQEANQKIQELQASQEaraDHEQQIKDLEQKLS-LQEQDAAI---VKNMKSELVRLPRLERELKQLR 263
Cdd:TIGR02169 885 GDLKKERDELEAQLRELERKIEELEAQIE---KKRKRLSELKAKLEaLEEELSEIedpKGEDEEIPEEELSLEDVQAELQ 961
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 966932011 264 EESMHLREMRETNGLLQEELEGLQRKLGRQEKMQETlvgLELENERLLAKLQSWERL 320
Cdd:TIGR02169 962 RVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAK---LEEERKAILERIEEYEKK 1015
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
50-386 |
8.16e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 8.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELEraastsarnyEREvdrNQELLTRIRQLQEREAGAEEKMQEQLE 129
Cdd:TIGR04523 339 QLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKL----------KKE---NQSYKQEIKNLESQINDLESKIQNQEK 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 130 RNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDL-----------QH 198
Cdd:TIGR04523 406 LNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVlsrsinkikqnLE 485
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 199 KKWQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSElvrlprLERELKQLREESMHLrEMRETNGL 278
Cdd:TIGR04523 486 QKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKE------KESKISDLEDELNKD-DFELKKEN 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 279 LQEELEGLQRKLgrqEKMQETLVGLELENERL--LAKLQSWERLDQTTGLSIRTPEdlsrfVVELQQRELALKDKNSAVT 356
Cdd:TIGR04523 559 LEKEIDEKNKEI---EELKQTQKSLKKKQEEKqeLIDQKEKEKKDLIKEIEEKEKK-----ISSLEKELEKAKKENEKLS 630
|
330 340 350
....*....|....*....|....*....|
gi 966932011 357 SSARGLEKARQQLQEELRQVSGQLLEERKK 386
Cdd:TIGR04523 631 SIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
50-310 |
3.03e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 3.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVEleraasTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLE 129
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLA------NLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 130 RNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQ 209
Cdd:TIGR02168 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 210 E--LQASQEARADHEQQIKDLEQKLSLQEQdaaivknmkselvrlpRLERELKQLREESMHLREMRETNGLLQEELEGLQ 287
Cdd:TIGR02168 432 EaeLKELQAELEELEEELEELQEELERLEE----------------ALEELREELEEAEQALDAAERELAQLQARLDSLE 495
|
250 260
....*....|....*....|...
gi 966932011 288 RKLGRQEKMQETLVGLELENERL 310
Cdd:TIGR02168 496 RLQENLEGFSEGVKALLKNQSGL 518
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
51-504 |
7.44e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 7.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 51 LEERAEQIRSKSHLIQVEREKMQMELShkRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLER 130
Cdd:TIGR04523 223 LKKQNNQLKDNIEKKQQEINEKTTEIS--NTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 131 NRQCQQNLDAASK-RLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLdlqhkkwQEANQKIQ 209
Cdd:TIGR04523 301 NNQKEQDWNKELKsELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQREL-------EEKQNEIE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 210 ELQASQEARADH----EQQIKDLEQKLSLQEQDAAI----VKNMKSELVRLPRLERELKQLREESMH-LREMRETNGLLQ 280
Cdd:TIGR04523 374 KLKKENQSYKQEiknlESQINDLESKIQNQEKLNQQkdeqIKKLQQEKELLEKEIERLKETIIKNNSeIKDLTNQDSVKE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 281 EELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSwERLDQTTGLSirtpeDLSRFVVELQQRELALKDKNSAVTSSAR 360
Cdd:TIGR04523 454 LIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQK-ELKSKEKELK-----KLNEEKKELEEKVKDLTKKISSLKEKIE 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 361 GLEKARQQLQEELRQVSGQL--LEERKKRETHEALARRLQKRVLLLTKErdgmrailgsYDSELTSAEyspQLTRRMREA 438
Cdd:TIGR04523 528 KLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEKNKEIEELKQT----------QKSLKKKQE---EKQELIDQK 594
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966932011 439 EDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRLK 504
Cdd:TIGR04523 595 EKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNK 660
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
50-401 |
8.92e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 8.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 50 QLEERAEQIRSKSHLIQVEREKMQMElshkraRVELERAASTSARNYEREVdrnQELLTRIRQLQEREAGAEEKMQEQLE 129
Cdd:TIGR02169 181 EVEENIERLDLIIDEKRQQLERLRRE------REKAERYQALLKEKREYEG---YELLKEKEALERQKEAIERQLASLEE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 130 RNRQCQQNLDAASKRLREKEDSLAQAGETISAL-KGRISELQWSVMDQEMRVKRLESEKQELQEQLdlqhkkwQEANQKI 208
Cdd:TIGR02169 252 ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKEREL-------EDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 209 QELQASQEA-RADHEQQIKDLEQKLSLQEQDAAIVKNMKSEL----VRLPRLERELKQLREESMHLREMRETnglLQEEL 283
Cdd:TIGR02169 325 AKLEAEIDKlLAEIEELEREIEEERKRRDKLTEEYAELKEELedlrAELEEVDKEFAETRDELKDYREKLEK---LKREI 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 284 EGLQRKLGRqekMQETLVGLELENERLLAKLQSWErldqttglsirtpEDLSRFVVELQQRELALKDKNSAVTSSARGLE 363
Cdd:TIGR02169 402 NELKRELDR---LQEELQRLSEELADLNAAIAGIE-------------AKINELEEEKEDKALEIKKQEWKLEQLAADLS 465
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 966932011 364 KARQQ---LQEELRQVSGQLLEERKKRETHEALARRLQKRV 401
Cdd:TIGR02169 466 KYEQElydLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
211-426 |
2.12e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 2.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 211 LQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVR-LPRLERELKQLREEsmhLREMRETNGLLQEELEGLQRk 289
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKqLAALERRIAALARR---IRALEQELAALEAELAELEK- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 290 lgRQEKMQETLVGLELENERLLAKLQSWERLDQTTGL--------SIRTPEDLSRFVVELQQRELALKDKNSAVTSSARG 361
Cdd:COG4942 91 --EIAELRAELEAQKEELAELLRALYRLGRQPPLALLlspedfldAVRRLQYLKYLAPARREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966932011 362 LEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTSAE 426
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLE 233
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
46-566 |
4.18e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 4.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 46 QQSMQLEERAEQIRSKSHliqvEREK-MQMELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQL----------- 113
Cdd:pfam15921 370 QESGNLDDQLQKLLADLH----KREKeLSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALlkamksecqgq 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 114 QEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQ 193
Cdd:pfam15921 446 MERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSR 525
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 194 LDLQHKKWQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSE--------LVRLPRLERELKQLREE 265
Cdd:pfam15921 526 VDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQhgrtagamQVEKAQLEKEINDRRLE 605
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 266 SMHLREMRETNGLLQEELEGLQRKLgRQEKMQETLVGleleNERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQRE 345
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDL-ELEKVKLVNAG----SERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLK 680
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 346 LALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTSA 425
Cdd:pfam15921 681 RNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNA 760
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 426 EYSPQLtrrMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQR--ADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRL 503
Cdd:pfam15921 761 NKEKHF---LKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRlkEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966932011 504 KveelegerrrleeekrmLEAQLERRVLQGDYDQSRTKVLHMSLNPASVARQRLREDHSQLQA 566
Cdd:pfam15921 838 K-----------------LQHTLDVKELQGPGYTSNSSMKPRLLQPASFTRTHSNVPSSQSTA 883
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
114-323 |
4.50e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 4.50e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 114 QEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQ 193
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 194 LDLQHKKWQEANQKIQELQASQEAR-----ADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREEsmh 268
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE--- 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 966932011 269 LREMRETNGLLQEELEGLQRKlgRQEKMQETLVGLELENERLLAKLQSWERLDQT 323
Cdd:COG4942 176 LEALLAELEEERAALEALKAE--RQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
50-399 |
6.30e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 6.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 50 QLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSAR--------NYEREVDRNQELLTRIRQLQEREAGAE 121
Cdd:PRK02224 353 DLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRerfgdapvDLGNAEDFLEELREERDELREREAELE 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 122 EKMQEQLERNRQCQQNLDA---------------------ASKRLREKEDSLAQAGETISALKGRISELQwSVMDQEMRV 180
Cdd:PRK02224 433 ATLRTARERVEEAEALLEAgkcpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRI 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 181 KRLESEKQELQEQLDLQHKKWQEANQKIQELqasQEARADHEQQIKDLEQKLSLQEQDAAivknmkSELVRLPRLERELK 260
Cdd:PRK02224 512 ERLEERREDLEELIAERRETIEEKRERAEEL---RERAAELEAEAEEKREAAAEAEEEAE------EAREEVAELNSKLA 582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 261 QLREESMHLREMREtnglLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQswERLDQttglsIRTPEDLSRfVVE 340
Cdd:PRK02224 583 ELKERIESLERIRT----LLAAIADAEDEIERLREKREALAELNDERRERLAEKR--ERKRE-----LEAEFDEAR-IEE 650
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 966932011 341 LQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQK 399
Cdd:PRK02224 651 AREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVEA 709
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
347-627 |
7.90e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.28 E-value: 7.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 347 ALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTSAE 426
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 427 YSP-QLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRLKV 505
Cdd:TIGR02168 316 RQLeELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQI 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 506 EELEGERRRLEEEKRMLEAQLERRV-----LQGDYDQSRTKVLHMSLNPASVARQRLREDHSQLQAECERLRGLLRAMER 580
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQqeieeLLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 966932011 581 ggtvptDLEAAAASLPSSK-EVAELKKQVESAELKNQRLKEVFQTKIQ 627
Cdd:TIGR02168 476 ------ALDAAERELAQLQaRLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
79-219 |
8.25e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 48.94 E-value: 8.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 79 KRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAE-EKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGE 157
Cdd:PRK12705 33 KEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARRErEELQREEERLVQKEEQLDARAEKLDNLENQLEEREK 112
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966932011 158 TISALKGRISELQWSVMDQEMRVKRLESE--KQELQEQLD--LQHKKWQEANQKIQELQASQEARA 219
Cdd:PRK12705 113 ALSARELELEELEKQLDNELYRVAGLTPEqaRKLLLKLLDaeLEEEKAQRVKKIEEEADLEAERKA 178
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
78-394 |
2.17e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.02 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 78 HKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEE----------------KMQEQLERnrqCQQNLDAA 141
Cdd:COG3096 283 LSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQdyqaasdhlnlvqtalRQQEKIER---YQEDLEEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 142 SKRLREKEDSLAQAGEtisalkgRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKwqeANQKIQELQASQEARA-- 219
Cdd:COG3096 360 TERLEEQEEVVEEAAE-------QLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTR---AIQYQQAVQALEKARAlc 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 220 ------------------DHEQQIK----DLEQKLSLQ-------EQDAAIVKNMKSELVRLPRLERELKQLRE--ESMH 268
Cdd:COG3096 430 glpdltpenaedylaafrAKEQQATeevlELEQKLSVAdaarrqfEKAYELVCKIAGEVERSQAWQTARELLRRyrSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 269 LREMRETnglLQEELEGLQRKLGRQEKMQETLvglelenerllaklqswERLDQTTGLSIRTPEDLSRFVVELQQRELAL 348
Cdd:COG3096 510 LAQRLQQ---LRAQLAELEQRLRQQQNAERLL-----------------EEFCQRIGQQLDAAEELEELLAELEAQLEEL 569
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 966932011 349 KDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALA 394
Cdd:COG3096 570 EEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLR 615
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
42-232 |
2.35e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 42 QMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYEREVDRNQElltrIRQLQEREAGAE 121
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAE----IEELEELIEELE 872
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 122 EKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKW 201
Cdd:TIGR02168 873 SELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
170 180 190
....*....|....*....|....*....|.
gi 966932011 202 QEANQKIQELQASQEARAdhEQQIKDLEQKL 232
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEA--RRRLKRLENKI 981
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
138-261 |
2.91e-05 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 47.38 E-value: 2.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 138 LDAASKRLREKEDSLAQAgetISALKGRISEL----QWSVMDQEM----RVKRLESEKQELQEQLDLQHKKWQEANQKIQ 209
Cdd:COG0542 395 IDEAAARVRMEIDSKPEE---LDELERRLEQLeiekEALKKEQDEasfeRLAELRDELAELEEELEALKARWEAEKELIE 471
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966932011 210 ELQASQEARADHEQQIKDLEQKLSLQEQD-----------------AAIV---------KNMKSELVRLPRLERELKQ 261
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEElaelapllreevteediAEVVsrwtgipvgKLLEGEREKLLNLEEELHE 549
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
179-380 |
4.18e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 4.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 179 RVKRLESEKQELQEQLDLQHKKWQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQdaaivknmkselvrLPRLERE 258
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAERE--------------IAELEAE 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 259 LKQLREESMHLREMRETNGLLQEELEGLQRKLgrqEKMQETLVGLELENERLLAKL-QSWERLDQTTGLSIRTPedlsRF 337
Cdd:COG4913 677 LERLDASSDDLAALEEQLEELEAELEELEEEL---DELKGEIGRLEKELEQAEEELdELQDRLEAAEDLARLEL----RA 749
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 966932011 338 VVELQQRELALKDKNSAVtssARGLEKARQQLQEELRQVSGQL 380
Cdd:COG4913 750 LLEERFAAALGDAVEREL---RENLEERIDALRARLNRAEEEL 789
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
40-263 |
4.29e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 4.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 40 SLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQmelSHKRARVELERAastsarNYEREVDRNQELLTRIRQLQEREAG 119
Cdd:COG4913 229 ALVEHFDDLERAHEALEDAREQIELLEPIRELAE---RYAAARERLAEL------EYLRAALRLWFAQRRLELLEAELEE 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 120 AEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQA-GETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQH 198
Cdd:COG4913 300 LRAELARLEAELERLEARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASA 379
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966932011 199 KKWQEANQKIQE-LQASQEARADHEQQIKDLEQKLSLQEQDAAivknmkselvrlpRLERELKQLR 263
Cdd:COG4913 380 EEFAALRAEAAAlLEALEEELEALEEALAEAEAALRDLRRELR-------------ELEAEIASLE 432
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
37-266 |
5.62e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 5.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 37 APGSLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVE-LERAASTSARNYEREVDRNQELLTRIRQLQE 115
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAaLERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 116 REAGAEEKMQEQLErnrQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLD 195
Cdd:COG4942 91 EIAELRAELEAQKE---ELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966932011 196 LQHKKWQEANQKIQELQASQE----ARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLP-RLERELKQLREES 266
Cdd:COG4942 168 ELEAERAELEALLAELEEERAaleaLKAERQKLLARLEKELAELAAELAELQQEAEELEALIaRLEAEAAAAAERT 243
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
188-401 |
5.68e-05 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 46.22 E-value: 5.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 188 QELQEQLDLQHKKWQEANQKIQELQASQEARADHEQ----QIKDLEqKLSLQE--------------------QDAAIVK 243
Cdd:COG0497 154 EELLEEYREAYRAWRALKKELEELRADEAERARELDllrfQLEELE-AAALQPgeeeeleeerrrlsnaeklrEALQEAL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 244 NMKSE-----LVRLPRLERELKQLREESMHLREMRETNGLLQEELEGLQRKLGRQekmqetLVGLELENERlLAKLQswE 318
Cdd:COG0497 233 EALSGgeggaLDLLGQALRALERLAEYDPSLAELAERLESALIELEEAASELRRY------LDSLEFDPER-LEEVE--E 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 319 RLDQTTGLSIR---TPEDLSRFVVELQQRELALKDKNSAVtssaRGLEKARQQLQEELRQVSGQLLEERKKretheaLAR 395
Cdd:COG0497 304 RLALLRRLARKygvTVEELLAYAEELRAELAELENSDERL----EELEAELAEAEAELLEAAEKLSAARKK------AAK 373
|
....*.
gi 966932011 396 RLQKRV 401
Cdd:COG0497 374 KLEKAV 379
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
51-292 |
7.36e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 46.19 E-value: 7.36e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 51 LEERAEQIRSkshliqVEREKMQMELSHKRARVELERAasTSARNYEREVDRNQELLTRIRQL-QEREAGAEEKmQEQLE 129
Cdd:PRK02224 470 IEEDRERVEE------LEAELEDLEEEVEEVEERLERA--EDLVEAEDRIERLEERREDLEELiAERRETIEEK-RERAE 540
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 130 RNRQCQQNLDAASKRLRE----KEDSLAQAGETISALKG-------------RISELQWSVMDQEMRVKRLESEKQELQE 192
Cdd:PRK02224 541 ELRERAAELEAEAEEKREaaaeAEEEAEEAREEVAELNSklaelkeriesleRIRTLLAAIADAEDEIERLREKREALAE 620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 193 QLDLQHKKWQEANQKIQELQAS------QEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREES 266
Cdd:PRK02224 621 LNDERRERLAEKRERKRELEAEfdeariEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERR 700
|
250 260
....*....|....*....|....*.
gi 966932011 267 MHLREMRETNGLLQEELEGLQRKLGR 292
Cdd:PRK02224 701 EALENRVEALEALYDEAEELESMYGD 726
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
41-352 |
1.18e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.84 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 41 LQMQYQQSMQleeRAEQIRSKSHLIQVEREkMQMELSHKRARVELERAASTSARNYEREVDR---------NQELLTRIR 111
Cdd:COG5022 760 LRRRYLQALK---RIKKIQVIQHGFRLRRL-VDYELKWRLFIKLQPLLSLLGSRKEYRSYLAciiklqktiKREKKLRET 835
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 112 QLQEREAGAEE------------KMQEQLERN---RQCQQNLDAASKRLREKEDslaqAGETISALKGRISELQWSVMDQ 176
Cdd:COG5022 836 EEVEFSLKAEVliqkfgrslkakKRFSLLKKEtiyLQSAQRVELAERQLQELKI----DVKSISSLKLVNLELESEIIEL 911
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 177 EMRVKRLESEKQELQEQLDlqhKKWQEANQKIQ--ELQASQEARADHEQQIKDLEQKL-SLQEQDAAIVKNMKSELVRLP 253
Cdd:COG5022 912 KKSLSSDLIENLEFKTELI---ARLKKLLNNIDleEGPSIEYVKLPELNKLHEVESKLkETSEEYEDLLKKSTILVREGN 988
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 254 RLERELKQLREEsmhLREMRETNGLLQEELEGLQrklgrqekmqetlvglelENERLLAKLQSWERLDQTTG--LSIRTP 331
Cdd:COG5022 989 KANSELKNFKKE---LAELSKQYGALQESTKQLK------------------ELPVEVAELQSASKIISSESteLSILKP 1047
|
330 340
....*....|....*....|.
gi 966932011 332 EDLSRFVVELQQRELALKDKN 352
Cdd:COG5022 1048 LQKLKGLLLLENNQLQARYKA 1068
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
146-512 |
1.50e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 146 REKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQasqearadheQQI 225
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK----------ERL 739
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 226 KDLEQKLSLQEQDAAIVKNMKSELV-RLPRLERELKQLREESMHLREMretngLLQEELEGLQRKLgrqEKMQETLVGLE 304
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEaRIEELEEDLHKLEEALNDLEAR-----LSHSRIPEIQAEL---SKLEEEVSRIE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 305 LENERLLAKLQSWERLDQTTGLSIrtpEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEER 384
Cdd:TIGR02169 812 ARLREIEQKLNRLTLEKEYLEKEI---QELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 385 KKRETHEALARRLQKRVLLLTKERDGMRAILGsydseltsaeyspQLTRRMREAEDMVQKVHSHSAEMEaQLSQALEELG 464
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQIEKKRKRLS-------------ELKAKLEALEEELSEIEDPKGEDE-EIPEEELSLE 954
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 966932011 465 GQKQRADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRLKVEELEGER 512
Cdd:TIGR02169 955 DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEER 1002
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
46-398 |
1.80e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 46 QQSMQLEERAEQirskshLIQVEREKMQMELSHKRARVELEraastsarNYEREVDRNQellTRIRQLQereagaeekmq 125
Cdd:COG3096 365 EQEEVVEEAAEQ------LAEAEARLEAAEEEVDSLKSQLA--------DYQQALDVQQ---TRAIQYQ----------- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 126 eqlernrQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHK------ 199
Cdd:COG3096 417 -------QAVQALEKARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKiageve 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 200 ---KWQEANQKIQELqASQEARADHEQQIK----DLEQKLSLQEqdaaivknmkselvrlpRLERELKQLREESMHLREM 272
Cdd:COG3096 490 rsqAWQTARELLRRY-RSQQALAQRLQQLRaqlaELEQRLRQQQ-----------------NAERLLEEFCQRIGQQLDA 551
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 273 RETNGLLQEELEGLQRKLGRQ-EKMQETLVGLELENERLLAKLQSwerldqttgLSIRTPEDLsrfvvELQQRELALKDK 351
Cdd:COG3096 552 AEELEELLAELEAQLEELEEQaAEAVEQRSELRQQLEQLRARIKE---------LAARAPAWL-----AAQDALERLREQ 617
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 966932011 352 NSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQ 398
Cdd:COG3096 618 SGEALADSQEVTAAMQQLLEREREATVERDELAARKQALESQIERLS 664
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
80-265 |
2.04e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.62 E-value: 2.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 80 RARVELERAASTSARN--------YEREVDRNQELLTRIRQlQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDS 151
Cdd:COG3206 163 EQNLELRREEARKALEfleeqlpeLRKELEEAEAALEEFRQ-KNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 152 LAQAGETISALKGRISELQWSVMDQEMR--VKRLESEKQELQEQLDLQHKKWQEANQKIQELQASQEARAdhEQQIKDLE 229
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQLRaqLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEA--QRILASLE 319
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 966932011 230 -QKLSLQEQDAAI---VKNMKSELVRLPRLERELKQLREE 265
Cdd:COG3206 320 aELEALQAREASLqaqLAQLEARLAELPELEAELRRLERE 359
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
79-296 |
2.99e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 79 KRARVELERAASTsARNYEREVDRNQELLTRIRQLQEREAGAEEKmQEQLERNRQCQQNLDAASKRLREKEDSLAQAGET 158
Cdd:COG4913 623 EEELAEAEERLEA-LEAELDALQERREALQRLAEYSWDEIDVASA-EREIAELEAELERLDASSDDLAALEEQLEELEAE 700
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 159 ISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLD--------LQHKKWQEANQKIQELQASQEARADHEQQIKDLEQ 230
Cdd:COG4913 701 LEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEaaedlarlELRALLEERFAAALGDAVERELRENLEERIDALRA 780
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 231 KLSLQEQD------------AAIVKNMKSELVRLPRLERELKQLREESMH-----LREMRETNglLQEELEGLQRKLGRQ 293
Cdd:COG4913 781 RLNRAEEEleramrafnrewPAETADLDADLESLPEYLALLDRLEEDGLPeyeerFKELLNEN--SIEFVADLLSKLRRA 858
|
...
gi 966932011 294 EKM 296
Cdd:COG4913 859 IRE 861
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
51-529 |
4.16e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 43.90 E-value: 4.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 51 LEERAEQIRSKshLIQVEREKMQMElSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEK------M 124
Cdd:PRK03918 212 ISSELPELREE--LEKLEKEVKELE-ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKvkelkeL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 125 QEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQwsvmDQEMRVKRLESEKQELQ---EQLDLQHKKW 201
Cdd:PRK03918 289 KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEkrlEELEERHELY 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 202 QEANQKIQELQASQEARADHEqqIKDLEQKL-SLQEQDAAIVKNMKSELVRLPRLERELKQLREESMHLREMR------- 273
Cdd:PRK03918 365 EEAKAKKEELERLKKRLTGLT--PEKLEKELeELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcg 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 274 ------ETNGLLQE---ELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQR 344
Cdd:PRK03918 443 relteeHRKELLEEytaELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEK 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 345 ELALKDKnsaVTSSARGLEKARQQLQEELRQVSGQlleERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTS 424
Cdd:PRK03918 523 KAEEYEK---LKEKLIKLKGEIKSLKKELEKLEEL---KKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 425 AEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSS-----SAEQSFLFSREEVD 499
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSeeeyeELREEYLELSRELA 676
|
490 500 510
....*....|....*....|....*....|
gi 966932011 500 TLRLKVEELEGERRRLEEEKRMLEAQLERR 529
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEER 706
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
79-375 |
4.21e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.79 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 79 KRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKM--QEQLERnrqCQQNLDAASKRLREKEDSLAQAG 156
Cdd:PRK04863 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALrqQEKIER---YQADLEELEERLEEQNEVVEEAD 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 157 ETISALKGRISELqwsvmdqEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQ-----------------ASQEARA 219
Cdd:PRK04863 376 EQQEENEARAEAA-------EEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALErakqlcglpdltadnaeDWLEEFQ 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 220 DHEQQIKD----LEQKLSLQ-------EQDAAIVKNMKSELVRlprlERELKQLREESMHLREMRetngLLQEELEGLQR 288
Cdd:PRK04863 449 AKEQEATEellsLEQKLSVAqaahsqfEQAYQLVRKIAGEVSR----SEAWDVARELLRRLREQR----HLAEQLQQLRM 520
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 289 KLGRQEKMQEtlvgLELENERLLAKLQswerldQTTGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQ 368
Cdd:PRK04863 521 RLSELEQRLR----QQQRAERLLAEFC------KRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590
|
....*..
gi 966932011 369 LQEELRQ 375
Cdd:PRK04863 591 LQARIQR 597
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
138-296 |
4.25e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 43.69 E-value: 4.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 138 LDAASKRLREKEDSLAQAGETISAlkGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQASQEA 217
Cdd:COG2433 382 LEELIEKELPEEEPEAEREKEHEE--RELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERR 459
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966932011 218 RADHEQQIKDLEQKLSlqeqdaaivknmkselvrlpRLERELKQLREESMHLREmretnglLQEELEGLQRKLGRQEKM 296
Cdd:COG2433 460 EIRKDREISRLDREIE--------------------RLERELEEERERIEELKR-------KLERLKELWKLEHSGELV 511
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
141-312 |
4.58e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 4.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 141 ASKRLREKEDSLAQAGETISALKGRISELQwsvmdqemrvkrleSEKQELQEQLdlqhkkwqEANQKIQELQASQEARAD 220
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALE--------------AELDALQERR--------EALQRLAEYSWDEIDVAS 665
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 221 HEQQIKDLEQKLSLQEQDAAIVKNMKSELVrlpRLERELKQLREEsmhLREMRETNGLLQEELEGLQRKLGRQEKMQETL 300
Cdd:COG4913 666 AEREIAELEAELERLDASSDDLAALEEQLE---ELEAELEELEEE---LDELKGEIGRLEKELEQAEEELDELQDRLEAA 739
|
170
....*....|..
gi 966932011 301 VGLELENERLLA 312
Cdd:COG4913 740 EDLARLELRALL 751
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
42-498 |
5.79e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 5.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 42 QMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMEL--SHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAG 119
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEARKADELKKAEEKKKADEAkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 120 AEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISEL-----------QWSVMDQEMRVKRLESEKQ 188
Cdd:PTZ00121 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKkkadeakkkaeEDKKKADELKKAAAAKKKA 1420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 189 ELQEQLDLQHKKWQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVR-LPRLERELKQLREESM 267
Cdd:PTZ00121 1421 DEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKkADEAKKKAEEAKKKAD 1500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 268 HLREMRETNGLLQEeleglQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQttglsIRTPEDLSRF--VVELQQRE 345
Cdd:PTZ00121 1501 EAKKAAEAKKKADE-----AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE-----LKKAEELKKAeeKKKAEEAK 1570
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 346 LALKDKNSAVTSS--ARGLEKARQQLQEELRQVSGQL-LEERKKRETHEALARRLQKRvlllTKERDGMRAILGSYDSEL 422
Cdd:PTZ00121 1571 KAEEDKNMALRKAeeAKKAEEARIEEVMKLYEEEKKMkAEEAKKAEEAKIKAEELKKA----EEEKKKVEQLKKKEAEEK 1646
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966932011 423 TSAEyspqltrRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEV 498
Cdd:PTZ00121 1647 KKAE-------ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEK 1715
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
98-527 |
1.10e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 98 REVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLRE-------KEDSLAQAGETISALKGRISELQ 170
Cdd:TIGR00618 184 MEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREalqqtqqSHAYLTQKREAQEEQLKKQQLLK 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 171 WsVMDQEMRVKRLESEKQELQEQLDLQHKKW-------------QEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQ 237
Cdd:TIGR00618 264 Q-LRARIEELRAQEAVLEETQERINRARKAAplaahikavtqieQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 238 DAAIVKNMKSELVRLPRLERELKQLREESMHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKlqsw 317
Cdd:TIGR00618 343 QRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA---- 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 318 ERLDQTTGLSIRTPEDLSRFVVELQQreLALKDKNSAVTSSARGLEKARQQLQEE---LRQVSGQLLEERKKRETHEALA 394
Cdd:TIGR00618 419 FRDLQGQLAHAKKQQELQQRYAELCA--AAITCTAQCEKLEKIHLQESAQSLKEReqqLQTKEQIHLQETRKKAVVLARL 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 395 RRLQKRVLLLTKErdgmraiLGSYDSELTSAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLE 474
Cdd:TIGR00618 497 LELQEEPCPLCGS-------CIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQ 569
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 966932011 475 MELKMLKSQSSSAEQSFLFSREEVDTLRLKVEELEGERRRLEEEKRMLEAQLE 527
Cdd:TIGR00618 570 QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQ 622
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
186-415 |
1.28e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 186 EKQELQEQLDLQHKKWQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKselvRLPRLERELKQLREE 265
Cdd:COG4913 249 EQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEA----ELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 266 SMHLREMRETNGLlqEELEGLQRKLGRQEKMQETLVGLELENERLLAKLqswerldqttGLSIRTPEDlsrfvvelqqre 345
Cdd:COG4913 325 LDELEAQIRGNGG--DRLEQLEREIERLERELEERERRRARLEALLAAL----------GLPLPASAE------------ 380
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 346 lALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAIL 415
Cdd:COG4913 381 -EFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDAL 449
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
104-252 |
1.29e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 104 QELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVM--------- 174
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvrnnkeye 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 175 -------DQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQAS-QEARADHEQQIKDLEQKLS-LQEQDAAIVKNM 245
Cdd:COG1579 93 alqkeieSLKRRISDLEDEILELMERIEELEEELAELEAELAELEAElEEKKAELDEELAELEAELEeLEAEREELAAKI 172
|
....*..
gi 966932011 246 KSELVRL 252
Cdd:COG1579 173 PPELLAL 179
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
263-526 |
1.39e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.98 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 263 REESMHLREMRETNGLLQEELEGLQRKLGRQEK-MQETLVGLELENERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVEL 341
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELRRIENrLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 342 QQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKkrETHEALARRLQKRVLLLTKERDGMRAILGSYDSE 421
Cdd:TIGR02169 750 EQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI--PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 422 LTSAEYSPQ-LTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEVDT 500
Cdd:TIGR02169 828 KEYLEKEIQeLQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
|
250 260
....*....|....*....|....*.
gi 966932011 501 LRLKVEELEGERRRLEEEKRMLEAQL 526
Cdd:TIGR02169 908 LEAQIEKKRKRLSELKAKLEALEEEL 933
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
96-427 |
1.51e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 96 YEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMD 175
Cdd:pfam17380 280 HQKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 176 QEM---RVKRLESEKQELQEQLDLQHKKWQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRL 252
Cdd:pfam17380 360 RELeriRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRR 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 253 PRLE--RELKQLREESMHLREMREtngLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKlqswerldqttglsiRT 330
Cdd:pfam17380 440 LEEEraREMERVRLEEQERQQQVE---RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK---------------EL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 331 PEDLSRFVVELQQRELALKDKNSAVTSSARglEKARQQLQEELRQvsGQLLEERKKRETHEALARRLQKRVLLLTKERDG 410
Cdd:pfam17380 502 EERKQAMIEEERKRKLLEKEMEERQKAIYE--EERRREAEEERRK--QQEMEERRRIQEQMRKATEERSRLEAMEREREM 577
|
330
....*....|....*..
gi 966932011 411 MRAILgsyDSELTSAEY 427
Cdd:pfam17380 578 MRQIV---ESEKARAEY 591
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
84-480 |
2.00e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 84 ELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKmQEQLERNRQCQQNLDAASKRLREKEDSL----------- 152
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAEL-QEELEELEEELEELEAELEELREELEKLekllqllplyq 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 153 --AQAGETISALKGRISELQWSVM---DQEMRVKRLESEKQELQEQLD-----LQHKKWQEANQKIQELQASQEARADHE 222
Cdd:COG4717 133 elEALEAELAELPERLEELEERLEelrELEEELEELEAELAELQEELEelleqLSLATEEELQDLAEELEELQQRLAELE 212
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 223 QQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREES------------MHLREMRETNGLLQEELEGLQRKL 290
Cdd:COG4717 213 EELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAallallglggslLSLILTIAGVLFLVLGLLALLFLL 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 291 GRQEKMQETLVGLELENERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQ 370
Cdd:COG4717 293 LAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 371 EELRQVSG-----QLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTSAEYSpQLTRRMREAEDMVQKV 445
Cdd:COG4717 373 AALLAEAGvedeeELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELE-ELEEELEELEEELEEL 451
|
410 420 430
....*....|....*....|....*....|....*..
gi 966932011 446 HSHSAEMEAQLSQALE--ELGGQKQRADMLEMELKML 480
Cdd:COG4717 452 REELAELEAELEQLEEdgELAELLQELEELKAELREL 488
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
51-635 |
2.26e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 51 LEERAEQIRSKSHLIQVEREKMQMELSHK-----RARVELERAAStSARNYEREVDRNQEllTRIRQLQEREAGAEEKMQ 125
Cdd:pfam15921 283 LTEKASSARSQANSIQSQLEIIQEQARNQnsmymRQLSDLESTVS-QLRSELREAKRMYE--DKIEELEKQLVLANSELT 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 126 E-QLERNRQCQQ--NLDAASKRL------REKEDSLAQ----------AGETISalkgrISELQWSVMDQEMRVKRLE-- 184
Cdd:pfam15921 360 EaRTERDQFSQEsgNLDDQLQKLladlhkREKELSLEKeqnkrlwdrdTGNSIT-----IDHLRRELDDRNMEVQRLEal 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 185 --SEKQELQEQLDLQHKKWQEANQK---------------------IQELQASQEARADHEQQIKDLEQklSLQEQDAAI 241
Cdd:pfam15921 435 lkAMKSECQGQMERQMAAIQGKNESlekvssltaqlestkemlrkvVEELTAKKMTLESSERTVSDLTA--SLQEKERAI 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 242 vKNMKSELVRL-PRLE---RELKQLREESMHLREMretngllQEELEGLQRKLGRQEKMQETLvglelenerllakLQSW 317
Cdd:pfam15921 513 -EATNAEITKLrSRVDlklQELQHLKNEGDHLRNV-------QTECEALKLQMAEKDKVIEIL-------------RQQI 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 318 ERLDQTTGLSIRTPedlSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKkreTHEALARRL 397
Cdd:pfam15921 572 ENMTQLVGQHGRTA---GAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVK---LVNAGSERL 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 398 qKRVLLLTKERDGMRAILGSYDSELTSAEyspqltrrmREAEDMVQKVHSHSAEMEAQLSQaleelggqkqradmLEMEL 477
Cdd:pfam15921 646 -RAVKDIKQERDQLLNEVKTSRNELNSLS---------EDYEVLKRNFRNKSEEMETTTNK--------------LKMQL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 478 KMLKSQSSSAEQSfLFSREEVDTLRLKVEELegerrrleeekrmLEAQLERRVLQGDYDQSRTKVLHMSLNPASVARQRL 557
Cdd:pfam15921 702 KSAQSELEQTRNT-LKSMEGSDGHAMKVAMG-------------MQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 558 REDHSQLQAECERLRG----------LLRAMERG-GTVPTDLEAAAASlpSSKEVAELKKQVESAELKNQRLKEVFQTKI 626
Cdd:pfam15921 768 KEEKNKLSQELSTVATeknkmageleVLRSQERRlKEKVANMEVALDK--ASLQFAECQDIIQRQEQESVRLKLQHTLDV 845
|
....*....
gi 966932011 627 QEFRKACYT 635
Cdd:pfam15921 846 KELQGPGYT 854
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
114-572 |
2.86e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 40.94 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 114 QEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGET--------ISALKGRISELQWSVMDQEMRVKRLES 185
Cdd:PRK10246 375 QTSDREQLRQWQQQLTHAEQKLNALPAITLTLTADEVAAALAQHAeqrplrqrLVALHGQIVPQQKRLAQLQVAIQNVTQ 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 186 EKQELQEQLDLQHKKWQEANQKIQELQASQEaradHEQQIKDLEQKLSLQE-----------QDAAIVKNMKSEL----V 250
Cdd:PRK10246 455 EQTQRNAALNEMRQRYKEKTQQLADVKTICE----QEARIKDLEAQRAQLQagqpcplcgstSHPAVEAYQALEPgvnqS 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 251 RLPRLERELKQLREESMHLREmretngllqeELEGLQRKLGRQEKMQETLvgleLENERLLAklQSWERLDQTTGLSIRT 330
Cdd:PRK10246 531 RLDALEKEVKKLGEEGAALRG----------QLDALTKQLQRDESEAQSL----RQEEQALT--QQWQAVCASLNITLQP 594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 331 PEDLSRFVVELQQRE-------------LALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKK------RETHE 391
Cdd:PRK10246 595 QDDIQPWLDAQEEHErqlrllsqrhelqGQIAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEaswlatRQQEA 674
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 392 ALARRLQKRVLLLTKERDGMRAILGSY-DSELTSAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRA 470
Cdd:PRK10246 675 QSWQQRQNELTALQNRIQQLTPLLETLpQSDDLPHSEETVALDNWRQVHEQCLSLHSQLQTLQQQDVLEAQRLQKAQAQF 754
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 471 DmlemelKMLKSQSSSAEQSFLFSREEVDTLrlkveelegerRRLEEEKRMLEAQLER-RVLQGDYDQSRTKvlHMSLNP 549
Cdd:PRK10246 755 D------TALQASVFDDQQAFLAALLDEETL-----------TQLEQLKQNLENQRQQaQTLVTQTAQALAQ--HQQHRP 815
|
490 500
....*....|....*....|....
gi 966932011 550 ASVARQ-RLREDHSQLQAECERLR 572
Cdd:PRK10246 816 DGLDLTvTVEQIQQELAQLAQQLR 839
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
52-625 |
2.90e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 2.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 52 EERAEQIRSKSHLIQVEREKMQMELSHKRArvELERAASTSaRNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERN 131
Cdd:TIGR02169 286 EEEQLRVKEKIGELEAEIASLERSIAEKER--ELEDAEERL-AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 132 RQ----CQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQL-DLQHKKWQ---E 203
Cdd:TIGR02169 363 KEeledLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIaGIEAKINEleeE 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 204 ANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVR-LPRLERELKQLREESMHLREMRETNGLLQEE 282
Cdd:TIGR02169 443 KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQReLAEAEAQARASEERVRGGRAVEEVLKASIQG 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 283 LEGLQRKLGRQE-------------KMQETLVGLELENERLLAKLQSwERLDQTTGL---SIRTPEDLSRFVVELQQREL 346
Cdd:TIGR02169 523 VHGTVAQLGSVGeryataievaagnRLNNVVVEDDAVAKEAIELLKR-RKAGRATFLplnKMRDERRDLSILSEDGVIGF 601
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 347 AL-----KDKNSAVTSSARG-------LEKARQQ--------LQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTK 406
Cdd:TIGR02169 602 AVdlvefDPKYEPAFKYVFGdtlvvedIEAARRLmgkyrmvtLEGELFEKSGAMTGGSRAPRGGILFSRSEPAELQRLRE 681
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 407 ERDGMRAILGSYDSELTSAE-YSPQLTRRMREAEDMV--------------QKVHSHSAEMEAQLSQALEELGGQKQ--- 468
Cdd:TIGR02169 682 RLEGLKRELSSLQSELRRIEnRLDELSQELSDASRKIgeiekeieqleqeeEKLKERLEELEEDLSSLEQEIENVKSelk 761
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 469 --RADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRLKVEELEGERRRLEEEKRMLEAQLERRVLQGDYDQSrtkvlhmS 546
Cdd:TIGR02169 762 elEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEK-------E 834
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 547 LNPASVARQRLREDHSQLQAECERLRGLLRAMERggtVPTDLEAAAASLPS-----SKEVAELKKQVESAELKNQRLKEV 621
Cdd:TIGR02169 835 IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEE---ELEELEAALRDLESrlgdlKKERDELEAQLRELERKIEELEAQ 911
|
....
gi 966932011 622 FQTK 625
Cdd:TIGR02169 912 IEKK 915
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
75-417 |
3.20e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 40.66 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 75 ELSHKRARVELERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQ 154
Cdd:COG4372 12 RLSLFGLRPKTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQA 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 155 AG-------ETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQASQEARADHEQQIKD 227
Cdd:COG4372 92 AQaelaqaqEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQ 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 228 LEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESMHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELEN 307
Cdd:COG4372 172 ELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEEL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 308 ERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKR 387
Cdd:COG4372 252 LEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELA 331
|
330 340 350
....*....|....*....|....*....|
gi 966932011 388 ETHEALARRLQKRVLLLTKERDGMRAILGS 417
Cdd:COG4372 332 LAILLAELADLLQLLLVGLLDNDVLELLSK 361
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
80-632 |
4.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 80 RARVELERAASTSARNYER---EVDRNQELLTRIRQLQereagAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAG 156
Cdd:COG4913 248 REQIELLEPIRELAERYAAareRLAELEYLRAALRLWF-----AQRRLELLEAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 157 ETISALKGRISELQWSvmdqemRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQAS--------QEARADHEQQIKDL 228
Cdd:COG4913 323 EELDELEAQIRGNGGD------RLEQLEREIERLERELEERERRRARLEALLAALGLPlpasaeefAALRAEAAALLEAL 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 229 EQKLSLQEQDAAivknmkSELVRLPRLERELKQLREEsmhLREMRETNGLLQEELEGLQRKLGRQEKMQET-------LV 301
Cdd:COG4913 397 EEELEALEEALA------EAEAALRDLRRELRELEAE---IASLERRKSNIPARLLALRDALAEALGLDEAelpfvgeLI 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 302 GLELENERllaklqsW----ERLDQTTGLSIRTPE----DLSRFVVELQQR--------ELALKDKNSAVTSSARGLEK- 364
Cdd:COG4913 468 EVRPEEER-------WrgaiERVLGGFALTLLVPPehyaAALRWVNRLHLRgrlvyervRTGLPDPERPRLDPDSLAGKl 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 365 ------ARQQLQEELRQVSGqlleeRKKRETHEALaRRLQKRVLL--LTKERDGMRAIlgsydseltsaeyspQLTRRMR 436
Cdd:COG4913 541 dfkphpFRAWLEAELGRRFD-----YVCVDSPEEL-RRHPRAITRagQVKGNGTRHEK---------------DDRRRIR 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 437 EAEDMVQKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRLKVEELEGERRRLE 516
Cdd:COG4913 600 SRYVLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELER 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 517 EEK-----RMLEAQLERrvLQGDYDQSRTKvlhmsLNPASVARQRLREDHSQLQAECERLRGLLRAMERGGTVPT----- 586
Cdd:COG4913 680 LDAssddlAALEEQLEE--LEAELEELEEE-----LDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELralle 752
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 966932011 587 -DLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKA 632
Cdd:COG4913 753 eRFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
50-248 |
4.51e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.15 E-value: 4.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 50 QLEERAEQIrskshliqVEREKMQMELSHKRARVELERAASTSARNYEREV-DRNQELltrirqlqereagaeekmQEQL 128
Cdd:PRK12704 35 EAEEEAKRI--------LEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELrERRNEL------------------QKLE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 129 ERNRQCQQNLDAASKRLREKEDSLAQagetisalkgriselqwsvmdQEMRVKRLESEKQELQEQLDLQHKKWQEANQKI 208
Cdd:PRK12704 89 KRLLQKEENLDRKLELLEKREEELEK---------------------KEKELEQKQQELEKKEEELEELIEEQLQELERI 147
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 966932011 209 QELQAsQEARadhEQQIKDLEQKlsLQEQDAAIVKNMKSE 248
Cdd:PRK12704 148 SGLTA-EEAK---EILLEKVEEE--ARHEAAVLIKEIEEE 181
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
209-314 |
5.02e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 38.37 E-value: 5.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 209 QELQASQEARADHEQQIKDLEQKLS-LQEQDAAIVKNMKSELVRLPRLERELKQLREEsmhLREMRETNGLLQEELEGLQ 287
Cdd:pfam08614 64 EELAELYRSRGELAQRLVDLNEELQeLEKKLREDERRLAALEAERAQLEEKLKDREEE---LREKRKLNQDLQDELVALQ 140
|
90 100
....*....|....*....|....*..
gi 966932011 288 RKLGRQEkmqETLVGLELENERLLAKL 314
Cdd:pfam08614 141 LQLNMAE---EKLRKLEKENRELVERW 164
|
|
| PRK10246 |
PRK10246 |
exonuclease subunit SbcC; Provisional |
29-240 |
5.51e-03 |
|
exonuclease subunit SbcC; Provisional
Pssm-ID: 182330 [Multi-domain] Cd Length: 1047 Bit Score: 40.17 E-value: 5.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 29 SGLDISTSAPGSLQMQYQQSMQLEERAEQIRSKSHLIQveREKMQMELSHKRARVELERAASTSARNYEREVDRNQELLt 108
Cdd:PRK10246 402 ITLTLTADEVAAALAQHAEQRPLRQRLVALHGQIVPQQ--KRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLA- 478
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 109 RIRQLQEREAGAE--EKMQEQLERNRQC---------------QQNLDAASKRLREKEDSLAQAGETISALKGRISELQW 171
Cdd:PRK10246 479 DVKTICEQEARIKdlEAQRAQLQAGQPCplcgstshpaveayqALEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTK 558
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966932011 172 SVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAA 240
Cdd:PRK10246 559 QLQRDESEAQSLRQEEQALTQQWQAVCASLNITLQPQDDIQPWLDAQEEHERQLRLLSQRHELQGQIAA 627
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
124-414 |
6.43e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.82 E-value: 6.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 124 MQEQLERNR-QCQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQ 202
Cdd:pfam12128 598 SEEELRERLdKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERK 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 203 E-ANQKIQELqasqearaDHEQQIKDLEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQlreesmhlREMRETNGLLQE 281
Cdd:pfam12128 678 DsANERLNSL--------EAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEGALDA--------QLALLKAAIAAR 741
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 282 ELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNSA-VTSSAR 360
Cdd:pfam12128 742 RSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWLQRRPRLATqLSNIER 821
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 966932011 361 GLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKrvlLLTKERDGMRAI 414
Cdd:pfam12128 822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSE---NLRGLRCEMSKL 872
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
50-467 |
6.54e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 39.82 E-value: 6.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 50 QLEERAEQIRSKSHLIQVE---REKMQMELSH-KRARVELERA-ASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKM 124
Cdd:pfam12128 231 QAIAGIMKIRPEFTKLQQEfntLESAELRLSHlHFGYKSDETLiASRQEERQETSAELNQLLRTLDDQWKEKRDELNGEL 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 125 QEQLERNRQCQQNLDAASKRLREKEDslaqagETISALKGriselqwsvmDQEMrVKRLESEKQELQEQLDLQHKKWQEA 204
Cdd:pfam12128 311 SAADAAVAKDRSELEALEDQHGAFLD------ADIETAAA----------DQEQ-LPSWQSELENLEERLKALTGKHQDV 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 205 NQKIQELQasQEARADHEQQIKDLEQKLSLQEQdaAIVKNMKSELVRLPRLERELKQLREESmhLREMRETNGLLQEELE 284
Cdd:pfam12128 374 TAKYNRRR--SKIKEQNNRDIAGIKDKLAKIRE--ARDRQLAVAEDDLQALESELREQLEAG--KLEFNEEEYRLKSRLG 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 285 GLQRKLGRQEKMQETLVGLELENERLlaklqswERLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEK 364
Cdd:pfam12128 448 ELKLRLNQATATPELLLQLENFDERI-------ERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 365 ARQQLQEELRQVSGQLLEERKKRET--HEALARRLQKRVLL-------LTKERDGMRAILGSYDSEL------TSAEYSP 429
Cdd:pfam12128 521 ALDELELQLFPQAGTLLHFLRKEAPdwEQSIGKVISPELLHrtdldpeVWDGSVGGELNLYGVKLDLkridvpEWAASEE 600
|
410 420 430
....*....|....*....|....*....|....*...
gi 966932011 430 QLTRRMREAEDMVQKVHSHSAEMEAQLSQALEELGGQK 467
Cdd:pfam12128 601 ELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKAS 638
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
97-375 |
6.77e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.02 E-value: 6.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 97 EREVDRNQELLTRIRQLQEREAGAEEKmqeqlernrqcQQNLDAASKRLREKEDSLAQAGETISALKGRISELQWSVMDQ 176
Cdd:PRK02224 488 EEEVEEVEERLERAEDLVEAEDRIERL-----------EERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK 556
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 177 EMRVKRLESEKQELQEQLDLQHKKWQEANQKIQEL---QASQEARADHEQQIKDLEQKLslqeqdaaivknmkSELVRLP 253
Cdd:PRK02224 557 REAAAEAEEEAEEAREEVAELNSKLAELKERIESLeriRTLLAAIADAEDEIERLREKR--------------EALAELN 622
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 254 RLERElkQLREESMHLREMRETngLLQEELEGLQRKLGR----QEKMQETLVGLELENERLLAKLQSWERldqttglSIR 329
Cdd:PRK02224 623 DERRE--RLAEKRERKRELEAE--FDEARIEEAREDKERaeeyLEQVEEKLDELREERDDLQAEIGAVEN-------ELE 691
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 966932011 330 TPEDLSRFVVELQQRELALKdknsAVTSSARGLEKARQQLQEELRQ 375
Cdd:PRK02224 692 ELEELRERREALENRVEALE----ALYDEAEELESMYGDLRAELRQ 733
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
38-391 |
7.38e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 39.89 E-value: 7.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 38 PGSLQMQYQQSMQLEERAEQIRSKSHLIQVEREKMQMELSHKRARVELERAASTSARNYER-EVDRNQELLTRIRQLQER 116
Cdd:PLN02939 39 RRGFSSQQKKKRGKNIAPKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRaSMQRDEAIAAIDNEQQTN 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 117 EAGAEEKMQEQLERNRQCQQNLDAASKRLREkedslaqagetisalkGRISELQwsvmdqemRVKRLESEKQELQEQLDL 196
Cdd:PLN02939 119 SKDGEQLSDFQLEDLVGMIQNAEKNILLLNQ----------------ARLQALE--------DLEKILTEKEALQGKINI 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 197 QHKKWQEANQKIQeLQASQEARAD-HEQQIKDLEQKLSLQEQdaaivknmkSELVRLPRLERELKQLREESMhlremret 275
Cdd:PLN02939 175 LEMRLSETDARIK-LAAQEKIHVEiLEEQLEKLRNELLIRGA---------TEGLCVHSLSKELDVLKEENM-------- 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 276 ngLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQS-----------------------WERLDQTTGLSIRTPE 332
Cdd:PLN02939 237 --LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLREleskfivaqedvsklsplqydcwWEKVENLQDLLDRATN 314
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 333 DLSRFVVELQQRElALKDKNSAVTSSARGLEKARQQLQE-ELRQVSGQLLEERKKRETHE 391
Cdd:PLN02939 315 QVEKAALVLDQNQ-DLRDKVDKLEASLKEANVSKFSSYKvELLQQKLKLLEERLQASDHE 373
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
73-626 |
7.72e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 7.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 73 QMELSHKRARVELERAASTSARNY----------EREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAAS 142
Cdd:TIGR00606 391 QIKNFHTLVIERQEDEAKTAAQLCadlqskerlkQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSS 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 143 KRLREKEDSLaqagetisalkgRISELQWSVMDQEMRVKRLESEKQELQ-EQLDLQHKKWQEAnQKIQELQASQEARADH 221
Cdd:TIGR00606 471 DRILELDQEL------------RKAERELSKAEKNSLTETLKKEVKSLQnEKADLDRKLRKLD-QEMEQLNHHTTTRTQM 537
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 222 EQQIKD----LEQKLSLQEQDAAIVKNMKSELVRLPRLERELKQLREESMHLREMRETNGLLQEELEGLQRKLGRQEKMQ 297
Cdd:TIGR00606 538 EMLTKDkmdkDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESK 617
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 298 ETLVGLELENERLLAKLQSWE----RLDQTTGLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEEL 373
Cdd:TIGR00606 618 EEQLSSYEDKLFDVCGSQDEEsdleRLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFI 697
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 374 RQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELtsaeysPQLTRRMREAEDMVQKVHSHSAEME 453
Cdd:TIGR00606 698 SDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEI------PELRNKLQKVNRDIQRLKNDIEEQE 771
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 454 AQLSQALEELGGQK---------QRADMLEMELKMLKSQSSSAEQSFLFSReEVDTLRLKVEELEGERRRLEEEKRMLEA 524
Cdd:TIGR00606 772 TLLGTIMPEEESAKvcltdvtimERFQMELKDVERKIAQQAAKLQGSDLDR-TVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 525 QLERRVLQGDYDQSRTKVLHMSLNPASVARQRLREDHSQLQAECERLRGLLRAMERGGTVPTDLEAAAASLPSSKEVAEL 604
Cdd:TIGR00606 851 LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELIS 930
|
570 580
....*....|....*....|....
gi 966932011 605 KKQVES--AELKNQRLKEVFQTKI 626
Cdd:TIGR00606 931 SKETSNkkAQDKVNDIKEKVKNIH 954
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
85-460 |
8.01e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 39.57 E-value: 8.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 85 LERAASTSARNYEREVDRNQELLTRIRQLQEREAGAEEKMQEQLERNRQCQQNLDAASKRLREKEDSLAQAGETISALKG 164
Cdd:COG4995 80 LALAALALALLAAALALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAALAAAAAA 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 165 RISELQWSVMDQEMRVKRLESEKQELQEQLDLQHKKWQEANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKN 244
Cdd:COG4995 160 AAAAALLALALALAAAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 245 MKSELVRLPRLERELKQLREESMHLREMRETNGLLQEELEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTT 324
Cdd:COG4995 240 LLALAAAAAALAAAAAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLL 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 325 GLSIRTPEDLSRFVVELQQRELALKDKNSAVTSSARGLEKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLL 404
Cdd:COG4995 320 LAALLLLLAALALLALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAA 399
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 966932011 405 TKERDGMRAILGSYDSELTSAEYSPQLTRRMREAEDMVQKVHSHSAEMEAQLSQAL 460
Cdd:COG4995 400 LLALAAAQLLRLLLAALALLLALAAYAAARLALLALIEYIILPDRLYAFVQLYQLL 455
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
203-559 |
8.64e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 8.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 203 EANQKIQELQASQEARADHEQQIKDLEQKLSLQEQDAAIVKNMKSELVrlpRLERELKQLREESMHLREMRETNGLLQEE 282
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLE---LEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 283 LEGLQRKLGRQEKMQETLVGLELENERLLAKLQSWERLDQTTGLSIRTpedLSRFVVELQQRELALKDKNSAVTSSARGL 362
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEE---LKSELLKLERRKVDDEEKLKESEKEKKKA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 363 EKARQQLQEELRQVSGQLLEERKKRETHEALARRLQKRVLLLTKERDGMRAILGSYDSELTSAEYSPQLTRRMREAEDMV 442
Cdd:pfam02463 327 EKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966932011 443 QKVHSHSAEMEAQLSQALEELGGQKQRADMLEMELKMLKSQSSSAEQSFLFSREEVDTLRLKVEELEGERRRLEEEKRML 522
Cdd:pfam02463 407 AQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQL 486
|
330 340 350
....*....|....*....|....*....|....*..
gi 966932011 523 EAQLERRVLQGDYDQSRTKVLHMSLNPASVARQRLRE 559
Cdd:pfam02463 487 ELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
|
| |
