NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1622921807|ref|XP_014988641|]
View 

integrator complex subunit 1 isoform X1 [Macaca mulatta]

Protein Classification

integrator complex subunit 1( domain architecture ID 10575350)

integrator complex subunit 1 (INTS1), a DUF3677 domain-containing protein, is a component of the Integrator (INT) complex, a complex involved in the small nuclear RNAs (snRNA) U1 and U2 transcription and in their 3'-box-dependent processing

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3677 pfam12432
Protein of unknown function (DUF3677); This domain family is found in eukaryotes, and is ...
 350-430 2.64e-36

Protein of unknown function (DUF3677); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


:

Pssm-ID: 463578  Cd Length: 81  Bit Score: 132.76  E-value: 2.64e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622921807  350 LLRLLTSTCGYKEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLLNHFMLCIRE 429
Cdd:pfam12432    1 LLKLLSSTCGYPEVRLLAASRLEIWLQNPKLMRPAQELLLSLCVNCNTSAERDVEVIDYLLKMRLKTKPLINHYTACIKE 80


                   .
gi 1622921807  430 L 430
Cdd:pfam12432   81 L 81
 
Name Accession Description Interval E-value
DUF3677 pfam12432
Protein of unknown function (DUF3677); This domain family is found in eukaryotes, and is ...
 350-430 2.64e-36

Protein of unknown function (DUF3677); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


Pssm-ID: 463578  Cd Length: 81  Bit Score: 132.76  E-value: 2.64e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622921807  350 LLRLLTSTCGYKEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLLNHFMLCIRE 429
Cdd:pfam12432    1 LLKLLSSTCGYPEVRLLAASRLEIWLQNPKLMRPAQELLLSLCVNCNTSAERDVEVIDYLLKMRLKTKPLINHYTACIKE 80


                   .
gi 1622921807  430 L 430
Cdd:pfam12432   81 L 81
 
Name Accession Description Interval E-value
DUF3677 pfam12432
Protein of unknown function (DUF3677); This domain family is found in eukaryotes, and is ...
 350-430 2.64e-36

Protein of unknown function (DUF3677); This domain family is found in eukaryotes, and is approximately 80 amino acids in length.


Pssm-ID: 463578  Cd Length: 81  Bit Score: 132.76  E-value: 2.64e-36
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622921807  350 LLRLLTSTCGYKEVRLLAVQKLEMWLQNPKLTRPAQDLLMSVCMNCNTHGSEDMDVISHLIKIRLKPKVLLNHFMLCIRE 429
Cdd:pfam12432    1 LLKLLSSTCGYPEVRLLAASRLEIWLQNPKLMRPAQELLLSLCVNCNTSAERDVEVIDYLLKMRLKTKPLINHYTACIKE 80


                   .
gi 1622921807  430 L 430
Cdd:pfam12432   81 L 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH