|
Name |
Accession |
Description |
Interval |
E-value |
| PurD |
COG0151 |
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; ... |
4-427 |
0e+00 |
|
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; Phosphoribosylamine-glycine ligase is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 439921 [Multi-domain] Cd Length: 422 Bit Score: 693.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 4 RVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTAcseKISNN-AISTSDHTALAQFCKEEKIEFVVVGPEAPLAAGI 82
Cdd:COG0151 2 KVLVIGSGGREHALAWKLAQSPRVDKLYVAPGNAGTA---QLAECvDIDVTDIEALVAFAKEENIDLVVVGPEAPLVAGI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 83 VGNLTSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPaLVVKASGLAAGKGVIVAK 162
Cdd:COG0151 79 VDAFRAAGIPVFGPSKAAAQLEGSKAFAKEFMARYGIPTAAYRVFTDLEEALAYLEEQGAP-IVVKADGLAAGKGVVVAE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 163 SKEEACKAVQEIMQEKAFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQV 242
Cdd:COG0151 158 TLEEALAAVDDMLADGKFGDAGARVVIEEFLEGEEASLFALTDGKTVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 243 SNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKDGPKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLNGLLC 322
Cdd:COG0151 238 TEELLEKIMEEIIEPTVAGMAAEGIPYRGVLYAGLMITADGPKVLEFNVRFGDPETQVVLPRLESDLLELLLAAAEGRLD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 323 TSLPVWlENHTALTVVMASKGYPGDYTKGVEITGFSEAQALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLVSALEE 402
Cdd:COG0151 318 EVELEW-DDRAAVCVVLASGGYPGSYEKGDVITGLEEAEAEGVKVFHAGTALEDGKLVTNGGRVLGVTALGDTLEEARER 396
|
410 420
....*....|....*....|....*
gi 1622920952 403 AKKGLAAIKFEGAIYRKDIGFRAIA 427
Cdd:COG0151 397 AYEAVEKIRFEGMFYRRDIGWRALK 421
|
|
| purD |
TIGR00877 |
phosphoribosylamine--glycine ligase; Alternate name: glycinamide ribonucleotide synthetase ... |
4-426 |
0e+00 |
|
phosphoribosylamine--glycine ligase; Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]
Pssm-ID: 273315 [Multi-domain] Cd Length: 422 Bit Score: 675.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 4 RVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNNAISTSDHTALAQFCKEEKIEFVVVGPEAPLAAGIV 83
Cdd:TIGR00877 2 KVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAIEITDIEALVEFAKKKKIDLAIIGPEAPLVLGLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 84 GNLTSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPAlVVKASGLAAGKGVIVAKS 163
Cdd:TIGR00877 82 DALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEAKSYIQEKGAPI-VVKADGLAAGKGVIVAKT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 164 KEEACKAVQEIMQEKaFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVS 243
Cdd:TIGR00877 161 NEEAIKAVEDILEQK-FGDAGERVVIEEFLDGEEFSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 244 NDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKDGPKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLNGLLCt 323
Cdd:TIGR00877 240 EEVERRIAEEIVEPTVKAMRKEGTPYKGVLYAGLMLTKEGPKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKLD- 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 324 SLPVWLENHTALTVVMASKGYPGDYTKGVEITGFSEAQALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLVSALEEA 403
Cdd:TIGR00877 319 EVELRFDNRAAVTVVLASEGYPEDYRKGDPITGEPLAEAEGVKVFHAGTKADNGKLVTNGGRVLAVTALGKTLEEARERA 398
|
410 420
....*....|....*....|...
gi 1622920952 404 KKGLAAIKFEGAIYRKDIGFRAI 426
Cdd:TIGR00877 399 YEAVEYIKFEGMFYRKDIGFRAL 421
|
|
| PurM |
COG0150 |
Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]; ... |
431-778 |
0e+00 |
|
Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]; Phosphoribosylaminoimidazole (AIR) synthetase is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 439920 [Multi-domain] Cd Length: 343 Bit Score: 585.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 431 QPRGLTYKESGVDIAAGNTLVKKIQPLAEATSRSGCKVDLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHD 510
Cdd:COG0150 1 MSMSLTYKDAGVDIDAGNAAVERIKPAVKRTFRPGVLGGLGGFGGLFDLPAKGYKEPVLVSGTDGVGTKLKIAQALDKHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 511 TIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAV 590
Cdd:COG0150 81 TIGIDLVAMCVNDILVQGAEPLFFLDYIATGKLDPEVAAAVVKGIAEGCRQAGCALIGGETAEMPGMYAPGEYDLAGFAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 591 GAMERDQKLPHlERITEGDVVVGIASSGLHSNGFSLVRKIVAKSFLQYSSPAPDgcGDQTLGDLLLTPTRIYSHSLLPIL 670
Cdd:COG0150 161 GVVEKDKIIDG-SRVKAGDVLIGLASSGLHSNGYSLVRKILEVAGLDLDDPVPE--LGRTLGEALLEPTRIYVKPVLALL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 671 RSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPKVFSWLQQEGQLSEEEMARTFNCGVGAALVVSKEQTEQIL 750
Cdd:COG0150 238 KAVDVHGMAHITGGGLPENLPRVLPEGLGAVIDRGSWPVPPIFDWLQELGNVSEEEMYRTFNMGIGMVLVVPPEDADAAL 317
|
330 340
....*....|....*....|....*...
gi 1622920952 751 RDIQQHKEEAWVIGSVVARAEgsPRVKV 778
Cdd:COG0150 318 ALLKAAGETAYVIGEVVAGEG--EGVVL 343
|
|
| PurM |
cd02196 |
PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for ... |
469-767 |
1.43e-178 |
|
PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Pssm-ID: 100032 [Multi-domain] Cd Length: 297 Bit Score: 520.49 E-value: 1.43e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 469 DLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVT 548
Cdd:cd02196 2 GIGGFAGLFDLGLGGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLFFLDYIATGKLDPEVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 549 EAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHlERITEGDVVVGIASSGLHSNGFSLVR 628
Cdd:cd02196 82 AEIVKGIAEGCRQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDG-SKIKPGDVLIGLPSSGLHSNGYSLVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 629 KIVAKSFLQYSSPAPDgcGDQTLGDLLLTPTRIYSHSLLPILRSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWR 708
Cdd:cd02196 161 KILFEEGLDYDDPEPG--LGKTLGEELLTPTRIYVKPILPLLEKVLVKGMAHITGGGLPENLPRVLPEGLGAVIDLGSWE 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622920952 709 IPKVFSWLQQEGQLSEEEMARTFNCGVGAALVVSKEQTEQILRDIQQHKEEAWVIGSVV 767
Cdd:cd02196 239 IPPIFKWIQKAGNVSEEEMYRTFNMGIGMVLIVSEEDADEVLEILEKLGEKAYVIGEVV 297
|
|
| PLN02257 |
PLN02257 |
phosphoribosylamine--glycine ligase |
6-433 |
2.87e-162 |
|
phosphoribosylamine--glycine ligase
Pssm-ID: 177899 [Multi-domain] Cd Length: 434 Bit Score: 484.24 E-value: 2.87e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 6 LIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISN-NAISTSDHTALAQFCKEEKIEFVVVGPEAPLAAGIVG 84
Cdd:PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCvPDLDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 85 NLTSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPaLVVKASGLAAGKGVIVAKSK 164
Cdd:PLN02257 81 DLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAP-IVVKADGLAAGKGVVVAMTL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 165 EEACKAVQEIMQEKAFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSN 244
Cdd:PLN02257 160 EEAYEAVDSMLVKGAFGSAGSEVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 245 DLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKDG--PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLNGLLC 322
Cdd:PLN02257 240 ELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSglPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 323 TSLPVWLENhTALTVVMASKGYPGDYTKGVEITGFSEAQAL--GLEVFHAGTALK-NGKVVTHGGRVLAVTAIRENLVSA 399
Cdd:PLN02257 320 GVSLTWSPD-SAMVVVMASNGYPGSYKKGTVIKNLDEAEAVapGVKVFHAGTALDsDGNVVAAGGRVLGVTAKGKDIAEA 398
|
410 420 430
....*....|....*....|....*....|....
gi 1622920952 400 LEEAKKGLAAIKFEGAIYRKDIGFRAIAFLQQPR 433
Cdd:PLN02257 399 RARAYDAVDQIDWPGGFFRRDIGWRAVARLQVAN 432
|
|
| purM |
TIGR00878 |
phosphoribosylaminoimidazole synthetase; Alternate name: phosphoribosylformylglycinamidine ... |
435-769 |
1.05e-150 |
|
phosphoribosylaminoimidazole synthetase; Alternate name: phosphoribosylformylglycinamidine cyclo-ligase; AIRS; AIR synthase This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]
Pssm-ID: 273316 [Multi-domain] Cd Length: 332 Bit Score: 450.25 E-value: 1.05e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 435 LTYKESGVDIAAGNTLVKKIQPLAEATSRSGCKVDLGGFAGLFDLKAaGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQ 514
Cdd:TIGR00878 1 VTYADAGVDIDAGNEAVKRIKSLVKKTRRPEVMGGLGGFAGLFDLGD-KYKEPVLVSGTDGVGTKLLVAEAMNKHDTIGI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 515 DLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAME 594
Cdd:TIGR00878 80 DLVAMNVNDLLVQGAEPLFFLDYLAVGKLDPEVASQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 595 RDQKLPHlERITEGDVVVGIASSGLHSNGFSLVRKIVAKSFLQYSSPAPDGCGdQTLGDLLLTPTRIYSHSLLPILRSGH 674
Cdd:TIGR00878 160 KDEIITG-EKVKPGDVLIGLGSSGIHSNGLSLVRKVLEDIAGLDYEDTPEEFG-KTLGEELLEPTRIYVKPILELIKSVI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 675 VKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPKVFSWLQQEGQLSEEEMARTFNCGVGAALVVSKEQTEQILRDIQ 754
Cdd:TIGR00878 238 VHGLAHITGGGLLENIPRRLPDGLKAVIDMSSWPQPPIFKWIQEAGNVEEEEMYRTFNMGVGFVVIVPEEEVDKALALLN 317
|
330
....*....|....*
gi 1622920952 755 QHKEEAWVIGSVVAR 769
Cdd:TIGR00878 318 AYGEKAWVIGEVKKG 332
|
|
| PLN02557 |
PLN02557 |
phosphoribosylformylglycinamidine cyclo-ligase |
434-767 |
3.53e-127 |
|
phosphoribosylformylglycinamidine cyclo-ligase
Pssm-ID: 178172 [Multi-domain] Cd Length: 379 Bit Score: 391.09 E-value: 3.53e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 434 GLTYKESGVDIAAGNTLVKKIQPLAEatsrsgckvDLGGFAGLFDlkaagFKDPLLASGTDGVGTKLKIAQLCNKHDTIG 513
Cdd:PLN02557 58 GLTYKDAGVDIDAGSELVRRIAKMAP---------GIGGFGGLFP-----FGDSYLVAGTDGVGTKLKLAFETGIHDTIG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 514 QDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAM 593
Cdd:PLN02557 124 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSV 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 594 ERDqKLPHLERITEGDVVVGIASSGLHSNGFSLVRKIVAKSFLQYSSPAPDgcGDQTLGDLLLTPTRIYSHSLLPILRSG 673
Cdd:PLN02557 204 KKD-AVIDGKNIVAGDVLIGLPSSGVHSNGFSLVRRVLAKSGLSLKDQLPG--ASVTIGEALMAPTVIYVKQVLDIISKG 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 674 HVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPKVFSWLQQEGQLSEEEMARTFNCGVGAALVVSKEQTEQILRDI 753
Cdd:PLN02557 281 GVKGIAHITGGGFTDNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMGIGMVLVVSPEAADRILEEG 360
|
330
....*....|....
gi 1622920952 754 QQHkeeAWVIGSVV 767
Cdd:PLN02557 361 AYP---AYRIGEVI 371
|
|
| GARS_A |
pfam01071 |
Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide ... |
105-298 |
9.86e-123 |
|
Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Pssm-ID: 395851 [Multi-domain] Cd Length: 194 Bit Score: 372.00 E-value: 9.86e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 105 SSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAG 184
Cdd:pfam01071 1 ASKSFAKDFMKRYGIPTAEYETFTDPEEAKSYIQEAGFPAIVVKADGLAAGKGVIVASSNEEAIKAVDEILEQKKFGEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 185 ETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQ 264
Cdd:pfam01071 81 ETVVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRAGEGDTGPNTGGMGAYSPAPVITPELLERIKETIVEPTVDGLRK 160
|
170 180 190
....*....|....*....|....*....|....
gi 1622920952 265 EGTPYTGILYAGIMLTKDGPKVLEFNCRFGDPEC 298
Cdd:pfam01071 161 EGIPFKGVLYAGLMLTKDGPKVLEFNCRFGDPET 194
|
|
| FMT_core_GART |
cd08645 |
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ... |
809-991 |
3.88e-99 |
|
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.
Pssm-ID: 187714 [Multi-domain] Cd Length: 183 Bit Score: 309.32 E-value: 3.88e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 809 RVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDNAIDLVLEEFSID 888
Cdd:cd08645 1 RIAVLASGSGSNLQALIDAIKSGKLNAEIVLVISNNPDAYGLERAKKAGIPTFVINRKDFPSREEFDEALLELLKEYKVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 889 IVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDT 968
Cdd:cd08645 81 LIVLAGFMRILSPEFLEAFPGRIINIHPSLLPKFYGLHAHEAALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPGDT 160
|
170 180
....*....|....*....|...
gi 1622920952 969 VATLSERVKLAEHKTFPAALQLV 991
Cdd:cd08645 161 PETLAERIHALEHRLYPEAIKLL 183
|
|
| PurN |
COG0299 |
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ... |
807-1001 |
2.32e-96 |
|
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 440068 [Multi-domain] Cd Length: 202 Bit Score: 302.72 E-value: 2.32e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 807 KARVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDNAIDLVLEEFS 886
Cdd:COG0299 1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYGLERARAAGIPTFVLDHKDFPSREAFDAALLEALDAYG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 887 IDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRG 966
Cdd:COG0299 81 PDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPD 160
|
170 180 190
....*....|....*....|....*....|....*
gi 1622920952 967 DTVATLSERVKLAEHKTFPAALQLVASGTVQLGEN 1001
Cdd:COG0299 161 DTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGR 195
|
|
| PurN |
TIGR00639 |
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ... |
808-996 |
9.15e-74 |
|
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]
Pssm-ID: 161973 [Multi-domain] Cd Length: 190 Bit Score: 241.51 E-value: 9.15e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 808 ARVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDNAIDLVLEEFSI 887
Cdd:TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 888 DIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGD 967
Cdd:TIGR00639 81 DLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPED 160
|
170 180
....*....|....*....|....*....
gi 1622920952 968 TVATLSERVKLAEHKTFPAALQLVASGTV 996
Cdd:TIGR00639 161 TEETLEQRIHKQEHRIYPLAIAWFAQGRL 189
|
|
| Formyl_trans_N |
pfam00551 |
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ... |
808-988 |
2.27e-71 |
|
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Pssm-ID: 395436 [Multi-domain] Cd Length: 181 Bit Score: 234.49 E-value: 2.27e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 808 ARVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDNAIDLVLEEFSI 887
Cdd:pfam00551 1 MKIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAAGLGRAEQAGIPTFVFEHKGLTPRSLFDQELADALRALAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 888 DIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGD 967
Cdd:pfam00551 81 DVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILPDD 160
|
170 180
....*....|....*....|.
gi 1622920952 968 TVATLSERVKLAEHKTFPAAL 988
Cdd:pfam00551 161 TAETLYNRVADLEHKALPRVL 181
|
|
| PLN02331 |
PLN02331 |
phosphoribosylglycinamide formyltransferase |
809-1002 |
3.34e-35 |
|
phosphoribosylglycinamide formyltransferase
Pssm-ID: 177965 [Multi-domain] Cd Length: 207 Bit Score: 133.28 E-value: 3.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 809 RVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKlyKNRVEFDNAIDLV--LEEFS 886
Cdd:PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKT--KGEPDGLSPDELVdaLRGAG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 887 IDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKG-----SNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAV 961
Cdd:PLN02331 79 VDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGkgyygIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1622920952 962 PVKRGDTVATLSERVKLAEHKTFPAALQLVASGTVQLGENG 1002
Cdd:PLN02331 159 PVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVWREDG 199
|
|
| AIRS_C |
pfam02769 |
AIR synthase related protein, C-terminal domain; This family includes Hydrogen expression ... |
607-776 |
5.88e-34 |
|
AIR synthase related protein, C-terminal domain; This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The function of the C-terminal domain of AIR synthase is unclear, but the cleft formed between N and C domains is postulated as a sulphate binding site.
Pssm-ID: 460684 [Multi-domain] Cd Length: 152 Bit Score: 127.46 E-value: 5.88e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 607 EGDVVVGIASSGLHSNGFSLVRKIVAKSflqysspapdGCGDQTLGDLLLTPTRIYSHSLLpILRSGHVKAFAHITGGGL 686
Cdd:pfam02769 2 PGDVLILLGSSGLHGAGLSLSRKGLEDS----------GLAAVQLGDPLLEPTLIYVKLLL-AALGGLVKAMHDITGGGL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 687 LENIPRVLPE-KLGVDLDAqtwRIPKVFSWLQqegqlSEEEMARTFNCGVGAALVVSKEQtEQILRDIQQHKEEAWVIGS 765
Cdd:pfam02769 71 AGALAEMAPAsGVGAEIDL---DKVPIFEELM-----LPLEMLLSENQGRGLVVVAPEEA-EAVLAILEKEGLEAAVIGE 141
|
170
....*....|.
gi 1622920952 766 VVARAEGSPRV 776
Cdd:pfam02769 142 VTAGGRLTVIV 152
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PurD |
COG0151 |
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; ... |
4-427 |
0e+00 |
|
Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; Phosphoribosylamine-glycine ligase is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 439921 [Multi-domain] Cd Length: 422 Bit Score: 693.68 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 4 RVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTAcseKISNN-AISTSDHTALAQFCKEEKIEFVVVGPEAPLAAGI 82
Cdd:COG0151 2 KVLVIGSGGREHALAWKLAQSPRVDKLYVAPGNAGTA---QLAECvDIDVTDIEALVAFAKEENIDLVVVGPEAPLVAGI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 83 VGNLTSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPaLVVKASGLAAGKGVIVAK 162
Cdd:COG0151 79 VDAFRAAGIPVFGPSKAAAQLEGSKAFAKEFMARYGIPTAAYRVFTDLEEALAYLEEQGAP-IVVKADGLAAGKGVVVAE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 163 SKEEACKAVQEIMQEKAFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQV 242
Cdd:COG0151 158 TLEEALAAVDDMLADGKFGDAGARVVIEEFLEGEEASLFALTDGKTVLPLPTAQDHKRAGDGDTGPNTGGMGAYSPAPVV 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 243 SNDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKDGPKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLNGLLC 322
Cdd:COG0151 238 TEELLEKIMEEIIEPTVAGMAAEGIPYRGVLYAGLMITADGPKVLEFNVRFGDPETQVVLPRLESDLLELLLAAAEGRLD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 323 TSLPVWlENHTALTVVMASKGYPGDYTKGVEITGFSEAQALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLVSALEE 402
Cdd:COG0151 318 EVELEW-DDRAAVCVVLASGGYPGSYEKGDVITGLEEAEAEGVKVFHAGTALEDGKLVTNGGRVLGVTALGDTLEEARER 396
|
410 420
....*....|....*....|....*
gi 1622920952 403 AKKGLAAIKFEGAIYRKDIGFRAIA 427
Cdd:COG0151 397 AYEAVEKIRFEGMFYRRDIGWRALK 421
|
|
| purD |
TIGR00877 |
phosphoribosylamine--glycine ligase; Alternate name: glycinamide ribonucleotide synthetase ... |
4-426 |
0e+00 |
|
phosphoribosylamine--glycine ligase; Alternate name: glycinamide ribonucleotide synthetase (GARS). This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]
Pssm-ID: 273315 [Multi-domain] Cd Length: 422 Bit Score: 675.95 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 4 RVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNNAISTSDHTALAQFCKEEKIEFVVVGPEAPLAAGIV 83
Cdd:TIGR00877 2 KVLVIGNGGREHALAWKLAQSPLVKYVYVAPGNAGTARLAKNKNVAIEITDIEALVEFAKKKKIDLAIIGPEAPLVLGLV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 84 GNLTSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPAlVVKASGLAAGKGVIVAKS 163
Cdd:TIGR00877 82 DALEEAGIPVFGPTKEAAQLEGSKAFAKDFMKRYGIPTAEYEVFTDPEEAKSYIQEKGAPI-VVKADGLAAGKGVIVAKT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 164 KEEACKAVQEIMQEKaFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVS 243
Cdd:TIGR00877 161 NEEAIKAVEDILEQK-FGDAGERVVIEEFLDGEEFSLLAFVDGKTVIPMPPAQDHKRALEGDKGPNTGGMGAYSPAPVFT 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 244 NDLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKDGPKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLNGLLCt 323
Cdd:TIGR00877 240 EEVERRIAEEIVEPTVKAMRKEGTPYKGVLYAGLMLTKEGPKVLEFNCRFGDPETQAVLPLLKSDLLEVCLAAVEGKLD- 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 324 SLPVWLENHTALTVVMASKGYPGDYTKGVEITGFSEAQALGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLVSALEEA 403
Cdd:TIGR00877 319 EVELRFDNRAAVTVVLASEGYPEDYRKGDPITGEPLAEAEGVKVFHAGTKADNGKLVTNGGRVLAVTALGKTLEEARERA 398
|
410 420
....*....|....*....|...
gi 1622920952 404 KKGLAAIKFEGAIYRKDIGFRAI 426
Cdd:TIGR00877 399 YEAVEYIKFEGMFYRKDIGFRAL 421
|
|
| PurM |
COG0150 |
Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]; ... |
431-778 |
0e+00 |
|
Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]; Phosphoribosylaminoimidazole (AIR) synthetase is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 439920 [Multi-domain] Cd Length: 343 Bit Score: 585.08 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 431 QPRGLTYKESGVDIAAGNTLVKKIQPLAEATSRSGCKVDLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHD 510
Cdd:COG0150 1 MSMSLTYKDAGVDIDAGNAAVERIKPAVKRTFRPGVLGGLGGFGGLFDLPAKGYKEPVLVSGTDGVGTKLKIAQALDKHD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 511 TIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAV 590
Cdd:COG0150 81 TIGIDLVAMCVNDILVQGAEPLFFLDYIATGKLDPEVAAAVVKGIAEGCRQAGCALIGGETAEMPGMYAPGEYDLAGFAV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 591 GAMERDQKLPHlERITEGDVVVGIASSGLHSNGFSLVRKIVAKSFLQYSSPAPDgcGDQTLGDLLLTPTRIYSHSLLPIL 670
Cdd:COG0150 161 GVVEKDKIIDG-SRVKAGDVLIGLASSGLHSNGYSLVRKILEVAGLDLDDPVPE--LGRTLGEALLEPTRIYVKPVLALL 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 671 RSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPKVFSWLQQEGQLSEEEMARTFNCGVGAALVVSKEQTEQIL 750
Cdd:COG0150 238 KAVDVHGMAHITGGGLPENLPRVLPEGLGAVIDRGSWPVPPIFDWLQELGNVSEEEMYRTFNMGIGMVLVVPPEDADAAL 317
|
330 340
....*....|....*....|....*...
gi 1622920952 751 RDIQQHKEEAWVIGSVVARAEgsPRVKV 778
Cdd:COG0150 318 ALLKAAGETAYVIGEVVAGEG--EGVVL 343
|
|
| PurM |
cd02196 |
PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for ... |
469-767 |
1.43e-178 |
|
PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Pssm-ID: 100032 [Multi-domain] Cd Length: 297 Bit Score: 520.49 E-value: 1.43e-178
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 469 DLGGFAGLFDLKAAGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVT 548
Cdd:cd02196 2 GIGGFAGLFDLGLGGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLFFLDYIATGKLDPEVA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 549 EAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAMERDQKLPHlERITEGDVVVGIASSGLHSNGFSLVR 628
Cdd:cd02196 82 AEIVKGIAEGCRQAGCALLGGETAEMPGVYAEGEYDLAGFAVGVVEKDKIIDG-SKIKPGDVLIGLPSSGLHSNGYSLVR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 629 KIVAKSFLQYSSPAPDgcGDQTLGDLLLTPTRIYSHSLLPILRSGHVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWR 708
Cdd:cd02196 161 KILFEEGLDYDDPEPG--LGKTLGEELLTPTRIYVKPILPLLEKVLVKGMAHITGGGLPENLPRVLPEGLGAVIDLGSWE 238
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622920952 709 IPKVFSWLQQEGQLSEEEMARTFNCGVGAALVVSKEQTEQILRDIQQHKEEAWVIGSVV 767
Cdd:cd02196 239 IPPIFKWIQKAGNVSEEEMYRTFNMGIGMVLIVSEEDADEVLEILEKLGEKAYVIGEVV 297
|
|
| PLN02257 |
PLN02257 |
phosphoribosylamine--glycine ligase |
6-433 |
2.87e-162 |
|
phosphoribosylamine--glycine ligase
Pssm-ID: 177899 [Multi-domain] Cd Length: 434 Bit Score: 484.24 E-value: 2.87e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 6 LIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISN-NAISTSDHTALAQFCKEEKIEFVVVGPEAPLAAGIVG 84
Cdd:PLN02257 1 LVIGGGGREHALCYALQRSPSCDAVFCAPGNAGIATSGDATCvPDLDISDSAAVISFCRKWGVGLVVVGPEAPLVAGLAD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 85 NLTSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPaLVVKASGLAAGKGVIVAKSK 164
Cdd:PLN02257 81 DLVKAGIPTFGPSAEAAALEGSKNFMKDLCDKYKIPTAKYETFTDPAAAKKYIKEQGAP-IVVKADGLAAGKGVVVAMTL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 165 EEACKAVQEIMQEKAFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSN 244
Cdd:PLN02257 160 EEAYEAVDSMLVKGAFGSAGSEVVVEEFLDGEEASFFALVDGENAIPLESAQDHKRVGDGDTGPNTGGMGAYSPAPVLTP 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 245 DLLLKIKDTVLQRTVDGMQQEGTPYTGILYAGIMLTKDG--PKVLEFNCRFGDPECQVILPLLKSDLYEVIQSTLNGLLC 322
Cdd:PLN02257 240 ELESKVMETIIYPTVKGMAAEGCKFVGVLYAGLMIEKKSglPKLLEYNVRFGDPECQVLMMRLESDLAQVLLAACKGELS 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 323 TSLPVWLENhTALTVVMASKGYPGDYTKGVEITGFSEAQAL--GLEVFHAGTALK-NGKVVTHGGRVLAVTAIRENLVSA 399
Cdd:PLN02257 320 GVSLTWSPD-SAMVVVMASNGYPGSYKKGTVIKNLDEAEAVapGVKVFHAGTALDsDGNVVAAGGRVLGVTAKGKDIAEA 398
|
410 420 430
....*....|....*....|....*....|....
gi 1622920952 400 LEEAKKGLAAIKFEGAIYRKDIGFRAIAFLQQPR 433
Cdd:PLN02257 399 RARAYDAVDQIDWPGGFFRRDIGWRAVARLQVAN 432
|
|
| purM |
TIGR00878 |
phosphoribosylaminoimidazole synthetase; Alternate name: phosphoribosylformylglycinamidine ... |
435-769 |
1.05e-150 |
|
phosphoribosylaminoimidazole synthetase; Alternate name: phosphoribosylformylglycinamidine cyclo-ligase; AIRS; AIR synthase This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]
Pssm-ID: 273316 [Multi-domain] Cd Length: 332 Bit Score: 450.25 E-value: 1.05e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 435 LTYKESGVDIAAGNTLVKKIQPLAEATSRSGCKVDLGGFAGLFDLKAaGFKDPLLASGTDGVGTKLKIAQLCNKHDTIGQ 514
Cdd:TIGR00878 1 VTYADAGVDIDAGNEAVKRIKSLVKKTRRPEVMGGLGGFAGLFDLGD-KYKEPVLVSGTDGVGTKLLVAEAMNKHDTIGI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 515 DLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAME 594
Cdd:TIGR00878 80 DLVAMNVNDLLVQGAEPLFFLDYLAVGKLDPEVASQIVKGIAEGCKQAGCALVGGETAEMPGMYRGGHYDLAGTAVGVVE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 595 RDQKLPHlERITEGDVVVGIASSGLHSNGFSLVRKIVAKSFLQYSSPAPDGCGdQTLGDLLLTPTRIYSHSLLPILRSGH 674
Cdd:TIGR00878 160 KDEIITG-EKVKPGDVLIGLGSSGIHSNGLSLVRKVLEDIAGLDYEDTPEEFG-KTLGEELLEPTRIYVKPILELIKSVI 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 675 VKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPKVFSWLQQEGQLSEEEMARTFNCGVGAALVVSKEQTEQILRDIQ 754
Cdd:TIGR00878 238 VHGLAHITGGGLLENIPRRLPDGLKAVIDMSSWPQPPIFKWIQEAGNVEEEEMYRTFNMGVGFVVIVPEEEVDKALALLN 317
|
330
....*....|....*
gi 1622920952 755 QHKEEAWVIGSVVAR 769
Cdd:TIGR00878 318 AYGEKAWVIGEVKKG 332
|
|
| PLN02557 |
PLN02557 |
phosphoribosylformylglycinamidine cyclo-ligase |
434-767 |
3.53e-127 |
|
phosphoribosylformylglycinamidine cyclo-ligase
Pssm-ID: 178172 [Multi-domain] Cd Length: 379 Bit Score: 391.09 E-value: 3.53e-127
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 434 GLTYKESGVDIAAGNTLVKKIQPLAEatsrsgckvDLGGFAGLFDlkaagFKDPLLASGTDGVGTKLKIAQLCNKHDTIG 513
Cdd:PLN02557 58 GLTYKDAGVDIDAGSELVRRIAKMAP---------GIGGFGGLFP-----FGDSYLVAGTDGVGTKLKLAFETGIHDTIG 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 514 QDLVAMCVNDILAQGAEPLFFLDYFSCGKLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDMYPPGEYDLAGFAVGAM 593
Cdd:PLN02557 124 IDLVAMSVNDIVTSGAKPLFFLDYFATSHLDVDLAEKVIKGIVDGCQQSDCALLGGETAEMPGFYAEGEYDLSGFAVGSV 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 594 ERDqKLPHLERITEGDVVVGIASSGLHSNGFSLVRKIVAKSFLQYSSPAPDgcGDQTLGDLLLTPTRIYSHSLLPILRSG 673
Cdd:PLN02557 204 KKD-AVIDGKNIVAGDVLIGLPSSGVHSNGFSLVRRVLAKSGLSLKDQLPG--ASVTIGEALMAPTVIYVKQVLDIISKG 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 674 HVKAFAHITGGGLLENIPRVLPEKLGVDLDAQTWRIPKVFSWLQQEGQLSEEEMARTFNCGVGAALVVSKEQTEQILRDI 753
Cdd:PLN02557 281 GVKGIAHITGGGFTDNIPRVFPKGLGAKIRTGSWEVPPLFKWLQEAGNIEDAEMRRTFNMGIGMVLVVSPEAADRILEEG 360
|
330
....*....|....
gi 1622920952 754 QQHkeeAWVIGSVV 767
Cdd:PLN02557 361 AYP---AYRIGEVI 371
|
|
| GARS_A |
pfam01071 |
Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide ... |
105-298 |
9.86e-123 |
|
Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02786).
Pssm-ID: 395851 [Multi-domain] Cd Length: 194 Bit Score: 372.00 E-value: 9.86e-123
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 105 SSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAG 184
Cdd:pfam01071 1 ASKSFAKDFMKRYGIPTAEYETFTDPEEAKSYIQEAGFPAIVVKADGLAAGKGVIVASSNEEAIKAVDEILEQKKFGEAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 185 ETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVLQRTVDGMQQ 264
Cdd:pfam01071 81 ETVVIEEFLEGEEVSVLAFVDGKTVKPLPPAQDHKRAGEGDTGPNTGGMGAYSPAPVITPELLERIKETIVEPTVDGLRK 160
|
170 180 190
....*....|....*....|....*....|....
gi 1622920952 265 EGTPYTGILYAGIMLTKDGPKVLEFNCRFGDPEC 298
Cdd:pfam01071 161 EGIPFKGVLYAGLMLTKDGPKVLEFNCRFGDPET 194
|
|
| FMT_core_GART |
cd08645 |
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); ... |
809-991 |
3.88e-99 |
|
Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART); Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.
Pssm-ID: 187714 [Multi-domain] Cd Length: 183 Bit Score: 309.32 E-value: 3.88e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 809 RVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDNAIDLVLEEFSID 888
Cdd:cd08645 1 RIAVLASGSGSNLQALIDAIKSGKLNAEIVLVISNNPDAYGLERAKKAGIPTFVINRKDFPSREEFDEALLELLKEYKVD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 889 IVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDT 968
Cdd:cd08645 81 LIVLAGFMRILSPEFLEAFPGRIINIHPSLLPKFYGLHAHEAALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPGDT 160
|
170 180
....*....|....*....|...
gi 1622920952 969 VATLSERVKLAEHKTFPAALQLV 991
Cdd:cd08645 161 PETLAERIHALEHRLYPEAIKLL 183
|
|
| PurN |
COG0299 |
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and ... |
807-1001 |
2.32e-96 |
|
Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Folate-dependent phosphoribosylglycinamide formyltransferase PurN is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 440068 [Multi-domain] Cd Length: 202 Bit Score: 302.72 E-value: 2.32e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 807 KARVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDNAIDLVLEEFS 886
Cdd:COG0299 1 MKRIAVLISGRGSNLQALIDAIEAGDLPAEIVLVISNRPDAYGLERARAAGIPTFVLDHKDFPSREAFDAALLEALDAYG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 887 IDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRG 966
Cdd:COG0299 81 PDLVVLAGFMRILTPEFVRAFPGRIINIHPSLLPAFPGLHAHRQALEAGVKVTGCTVHFVDEEVDTGPIIAQAAVPVLPD 160
|
170 180 190
....*....|....*....|....*....|....*
gi 1622920952 967 DTVATLSERVKLAEHKTFPAALQLVASGTVQLGEN 1001
Cdd:COG0299 161 DTEETLAARILEQEHRLYPEAIRLLAEGRLTLDGR 195
|
|
| PurN |
TIGR00639 |
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model ... |
808-996 |
9.15e-74 |
|
phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent; This model describes phosphoribosylglycinamide formyltransferase (GAR transformylase), one of several proteins in formyl_transf (pfam00551). This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. PurT, a different GAR transformylase, uses ATP and formate rather than formyl tetrahydrofolate. Experimental proof includes complementation of E. coli purN mutants by orthologs from vertebrates (where it is a domain of a multifunctional protein), Bacillus subtilis, and Arabidopsis. No archaeal example was detected. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis]
Pssm-ID: 161973 [Multi-domain] Cd Length: 190 Bit Score: 241.51 E-value: 9.15e-74
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 808 ARVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDNAIDLVLEEFSI 887
Cdd:TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 888 DIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGD 967
Cdd:TIGR00639 81 DLVVLAGFMRILGPTFLSRFAGRILNIHPSLLPAFPGLHAVEQALEAGVKESGCTVHYVDEEVDTGPIIAQAKVPILPED 160
|
170 180
....*....|....*....|....*....
gi 1622920952 968 TVATLSERVKLAEHKTFPAALQLVASGTV 996
Cdd:TIGR00639 161 TEETLEQRIHKQEHRIYPLAIAWFAQGRL 189
|
|
| Formyl_trans_N |
pfam00551 |
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide ... |
808-988 |
2.27e-71 |
|
Formyl transferase; This family includes the following members. Glycinamide ribonucleotide transformylase catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyltetrahydrofolate deformylase produces formate from formyl- tetrahydrofolate. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. Inclusion of the following members is supported by PSI-blast. HOXX_BRAJA (P31907) contains a related domain of unknown function. PRTH_PORGI (P46071) contains a related domain of unknown function. Y09P_MYCTU (Q50721) contains a related domain of unknown function.
Pssm-ID: 395436 [Multi-domain] Cd Length: 181 Bit Score: 234.49 E-value: 2.27e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 808 ARVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDNAIDLVLEEFSI 887
Cdd:pfam00551 1 MKIAVLISGTGSNLQALIDALRKGGQDADVVLVISNKDKAAGLGRAEQAGIPTFVFEHKGLTPRSLFDQELADALRALAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 888 DIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGD 967
Cdd:pfam00551 81 DVIVLAGYMRILPPEFLQAPPGGILNIHPSLLPRFRGAAPIQRALEAGDKETGVTIHFVDEGLDTGPILAQKAVPILPDD 160
|
170 180
....*....|....*....|.
gi 1622920952 968 TVATLSERVKLAEHKTFPAAL 988
Cdd:pfam00551 161 TAETLYNRVADLEHKALPRVL 181
|
|
| GARS_N |
pfam02844 |
Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase catalyzes ... |
4-104 |
4.85e-47 |
|
Phosphoribosylglycinamide synthetase, N domain; Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam00289). This domain is structurally related to the PreATP-grasp domain.
Pssm-ID: 460723 [Multi-domain] Cd Length: 102 Bit Score: 162.91 E-value: 4.85e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 4 RVLIIGSGGREHTLAWKLAQSHHVKQVLVAPGNAGTACSEKISNnaISTSDHTALAQFCKEEKIEFVVVGPEAPLAAGIV 83
Cdd:pfam02844 2 KVLVIGSGGREHALAWKLAQSPLVEKLYVAPGNGGTAQLAECVD--IDATDFEALVAFAKENNIDLVVVGPEAPLVAGIV 79
|
90 100
....*....|....*....|...
gi 1622920952 84 GNLTS--AGVRCFGPTAEAAQLE 104
Cdd:pfam02844 80 DALREraAGIPVFGPSKAAAQLE 102
|
|
| FMT_core |
cd08369 |
Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The ... |
812-990 |
7.41e-43 |
|
Formyltransferase, catalytic core domain; Formyltransferase, catalytic core domain. The proteins of this superfamily contain a formyltransferase domain that hydrolyzes the removal of a formyl group from its substrate as part of a multistep transfer mechanism, and this alignment model represents the catalytic core of the formyltransferase domain. This family includes the following known members; Glycinamide Ribonucleotide Transformylase (GART), Formyl-FH4 Hydrolase, Methionyl-tRNA Formyltransferase, ArnA, and 10-Formyltetrahydrofolate Dehydrogenase (FDH). Glycinamide Ribonucleotide Transformylase (GART) catalyzes the third step in de novo purine biosynthesis, the transfer of a formyl group to 5'-phosphoribosylglycinamide. Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Methionyl-tRNA Formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA, which plays important role in translation initiation. ArnA is required for the modification of lipid A with 4-amino-4-deoxy-l-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. 10-formyltetrahydrofolate dehydrogenase (FDH) catalyzes the conversion of 10-formyltetrahydrofolate, a precursor for nucleotide biosynthesis, to tetrahydrofolate. Members of this family are multidomain proteins. The formyltransferase domain is located at the N-terminus of FDH, Methionyl-tRNA Formyltransferase and ArnA, and at the C-terminus of Formyl-FH4 Hydrolase. Prokaryotic Glycinamide Ribonucleotide Transformylase (GART) is a single domain protein while eukaryotic GART is a trifunctional protein that catalyzes the second, third and fifth steps in de novo purine biosynthesis.
Pssm-ID: 187712 [Multi-domain] Cd Length: 173 Bit Score: 153.98 E-value: 7.41e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 812 VLISGTGSNLQALIDSTREpNSSAQIDVVISNKAAVAGLDKAERAGIptrviNHKLYKNRVEFDNAIDLVLEEFSIDIVC 891
Cdd:cd08369 1 IVILGSGNIGQRVLKALLS-KEGHEIVGVVTHPDSPRGTAQLSLELV-----GGKVYLDSNINTPELLELLKEFAPDLIV 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 892 LAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTVAT 971
Cdd:cd08369 75 SINFRQIIPPEILKLPPGGAINIHPSLLPRYRGVNPLAWAIINGEKETGVTVHYMDEGIDTGDIIAQEVIPISPDDTAGT 154
|
170
....*....|....*....
gi 1622920952 972 LSERVKLAEHKTFPAALQL 990
Cdd:cd08369 155 LYQRLIELGPKLLKEALQK 173
|
|
| GARS_C |
pfam02843 |
Phosphoribosylglycinamide synthetase, C domain; Phosphoribosylglycinamide synthetase catalyzes ... |
334-424 |
2.45e-38 |
|
Phosphoribosylglycinamide synthetase, C domain; Phosphoribosylglycinamide synthetase catalyzes the second step in the de novo biosynthesis of purine. The reaction catalyzed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide. This domain is related to the C-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (see pfam02787).
Pssm-ID: 460722 [Multi-domain] Cd Length: 88 Bit Score: 137.58 E-value: 2.45e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 334 ALTVVMASKGYPGDYTKGVEITGFSEAqalGLEVFHAGTALKNGKVVTHGGRVLAVTAIRENLVSALEEAKKGLAAIKFE 413
Cdd:pfam02843 1 AVCVVLASGGYPGSYEKGDVITGLDEA---GVKVFHAGTKLKDGKLVTSGGRVLAVTALGDTLEEAREKAYEAVEKIDFE 77
|
90
....*....|.
gi 1622920952 414 GAIYRKDIGFR 424
Cdd:pfam02843 78 GMFYRKDIGTR 88
|
|
| PurU |
COG0788 |
Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate ... |
800-984 |
5.61e-36 |
|
Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]; Formyltetrahydrofolate hydrolase is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 440551 [Multi-domain] Cd Length: 282 Bit Score: 137.87 E-value: 5.61e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 800 HFSFEKKKARVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLdkAERAGIPTRVINHKLyKNRVEFDNAID 879
Cdd:COG0788 79 RLHDSDRRKRVAILVSKEDHCLNDLLYRWRSGELPAEIPAVISNHPDLRPL--AEWFGIPFHHIPVTK-ETKAEAEARLL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 880 LVLEEFSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQE 959
Cdd:COG0788 156 ELLEEYDIDLVVLARYMQILSPDFCARLPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQD 235
|
170 180 190
....*....|....*....|....*....|....*...
gi 1622920952 960 AVPVKRGDTVA------------TLSERVKL-AEHKTF 984
Cdd:COG0788 236 VERVDHRDTPEdlvrkgrdvekrVLARAVRWhLEDRVL 273
|
|
| PLN02331 |
PLN02331 |
phosphoribosylglycinamide formyltransferase |
809-1002 |
3.34e-35 |
|
phosphoribosylglycinamide formyltransferase
Pssm-ID: 177965 [Multi-domain] Cd Length: 207 Bit Score: 133.28 E-value: 3.34e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 809 RVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDKAERAGIPTRVINHKlyKNRVEFDNAIDLV--LEEFS 886
Cdd:PLN02331 1 KLAVFVSGGGSNFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPKT--KGEPDGLSPDELVdaLRGAG 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 887 IDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKG-----SNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAV 961
Cdd:PLN02331 79 VDFVLLAGYLKLIPVELVRAYPRSILNIHPALLPAFGGkgyygIKVHKAVIASGARYSGPTVHFVDEHYDTGRILAQRVV 158
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1622920952 962 PVKRGDTVATLSERVKLAEHKTFPAALQLVASGTVQLGENG 1002
Cdd:PLN02331 159 PVLATDTPEELAARVLHEEHQLYVEVVAALCEERIVWREDG 199
|
|
| AIRS_C |
pfam02769 |
AIR synthase related protein, C-terminal domain; This family includes Hydrogen expression ... |
607-776 |
5.88e-34 |
|
AIR synthase related protein, C-terminal domain; This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The function of the C-terminal domain of AIR synthase is unclear, but the cleft formed between N and C domains is postulated as a sulphate binding site.
Pssm-ID: 460684 [Multi-domain] Cd Length: 152 Bit Score: 127.46 E-value: 5.88e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 607 EGDVVVGIASSGLHSNGFSLVRKIVAKSflqysspapdGCGDQTLGDLLLTPTRIYSHSLLpILRSGHVKAFAHITGGGL 686
Cdd:pfam02769 2 PGDVLILLGSSGLHGAGLSLSRKGLEDS----------GLAAVQLGDPLLEPTLIYVKLLL-AALGGLVKAMHDITGGGL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 687 LENIPRVLPE-KLGVDLDAqtwRIPKVFSWLQqegqlSEEEMARTFNCGVGAALVVSKEQtEQILRDIQQHKEEAWVIGS 765
Cdd:pfam02769 71 AGALAEMAPAsGVGAEIDL---DKVPIFEELM-----LPLEMLLSENQGRGLVVVAPEEA-EAVLAILEKEGLEAAVIGE 141
|
170
....*....|.
gi 1622920952 766 VVARAEGSPRV 776
Cdd:pfam02769 142 VTAGGRLTVIV 152
|
|
| FMT_core_Formyl-FH4-Hydrolase_C |
cd08648 |
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; ... |
809-996 |
8.93e-33 |
|
Formyltetrahydrofolate deformylase (Formyl-FH4 hydrolase), C-terminal hydrolase domain; Formyl-FH4 Hydrolase catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formate is the substrate of phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase has been proposed to regulate the balance of FH4 and C1-FH4 in the cell. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. This domain belongs to the formyltransferase (FMT) domain superfamily. Members of this family have an N-terminal ACT domain, which is commonly involved in specifically bind an amino acid or other small ligand leading to regulation of the enzyme. The N-terminal of this protein family may be responsible for the binding of the regulators methionine and glycine.
Pssm-ID: 187717 [Multi-domain] Cd Length: 196 Bit Score: 125.75 E-value: 8.93e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 809 RVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLdkAERAGIPTRVIN-HKlyKNRVEFDNAIDLVLEEFSI 887
Cdd:cd08648 2 RVAIFVSKEDHCLYDLLHRWREGELPCEIPLVISNHPDLRPL--AERFGIPFHHIPvTK--DTKAEAEAEQLELLEEYGV 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 888 DIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGD 967
Cdd:cd08648 78 DLVVLARYMQILSPDFVERYPNRIINIHHSFLPAFKGAKPYHQAFERGVKLIGATAHYVTEELDEGPIIEQDVERVSHRD 157
|
170 180
....*....|....*....|....*....
gi 1622920952 968 TVATLSERVKLAEHKTFPAALQLVASGTV 996
Cdd:cd08648 158 SVEDLVRKGRDIEKQVLARAVKWHLEDRV 186
|
|
| PurM-like |
cd00396 |
AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen ... |
489-765 |
2.09e-30 |
|
AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Pssm-ID: 100027 [Multi-domain] Cd Length: 222 Bit Score: 119.81 E-value: 2.09e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 489 LASGTDGVGTKLKIaqlcnKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSCGK-LDLSVTEAVVAGIAKACGKAGCALL 567
Cdd:cd00396 2 LAMSTDGINPPLAI-----NPWAGGRLAVGGAVNDIAAMGARPIALLASLSLSNgLEVDILEDVVDGVAEACNQLGVPIV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 568 GGETAEMPDMYPPgEYDLAGFAVGAMERDqKLPHLERITEGDVVVGIassglhsnGFSLVRKIVAKsflqysspapdgcg 647
Cdd:cd00396 77 GGHTSVSPGTMGH-KLSLAVFAIGVVEKD-RVIDSSGARPGDVLILT--------GVDAVLELVAA-------------- 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 648 dqtlgdllltptriyshsllpilrsGHVKAFAHITGGGLLENIPRVLPEK-LGVDLDAQTWRIPKVFSWLQQEgqlsEEE 726
Cdd:cd00396 133 -------------------------GDVHAMHDITDGGLLGTLPELAQASgVGAEIDLEAIPLDEVVRWLCVE----HIE 183
|
250 260 270
....*....|....*....|....*....|....*....
gi 1622920952 727 MARTFNCGVGAALVVSKEQTEQILRDIQQHKEEAWVIGS 765
Cdd:cd00396 184 EALLFNSSGGLLIAVPAEEADAVLLLLNGNGIDAAVIGR 222
|
|
| purU |
PRK06027 |
formyltetrahydrofolate deformylase; Reviewed |
800-979 |
3.52e-29 |
|
formyltetrahydrofolate deformylase; Reviewed
Pssm-ID: 235676 [Multi-domain] Cd Length: 286 Bit Score: 118.29 E-value: 3.52e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 800 HFSFEKKkaRVAVLISGTGSNLQALIDSTREPNSSAQIDVVISNKAAVAGLdkAERAGIPTRVINH-KLykNRVEFDNAI 878
Cdd:PRK06027 84 LDSAERK--RVVILVSKEDHCLGDLLWRWRSGELPVEIAAVISNHDDLRSL--VERFGIPFHHVPVtKE--TKAEAEARL 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 879 DLVLEEFSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQ 958
Cdd:PRK06027 158 LELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTADLDEGPIIEQ 237
|
170 180
....*....|....*....|....*..
gi 1622920952 959 EAVPVKRGDTVATLS------ERVKLA 979
Cdd:PRK06027 238 DVIRVDHRDTAEDLVragrdvEKQVLA 264
|
|
| AIRS |
pfam00586 |
AIR synthase related protein, N-terminal domain; This family includes Hydrogen expression ... |
489-593 |
7.73e-24 |
|
AIR synthase related protein, N-terminal domain; This family includes Hydrogen expression/formation protein HypE, AIR synthases EC:6.3.3.1, FGAM synthase EC:6.3.5.3 and selenide, water dikinase EC:2.7.9.3. The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Pssm-ID: 459859 [Multi-domain] Cd Length: 104 Bit Score: 96.75 E-value: 7.73e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 489 LASGTDGVGTKLKIaqlcNKHDTIGQDLVAMCVNDILAQGAEPLFFLDYFSCGKLDL--SVTEAVVAGIAKACGKAGCAL 566
Cdd:pfam00586 5 VAVTTDGHGTPSLV----DPYHFPGAKAVAGNLSDIAAMGARPLAFLDSLALPGGPEveWVLEEIVEGIAEACREAGVPL 80
|
90 100
....*....|....*....|....*..
gi 1622920952 567 LGGETAEMPDMYPPgeyDLAGFAVGAM 593
Cdd:pfam00586 81 VGGDTSFDPEGGKP---TISVTAVGIV 104
|
|
| PLN02828 |
PLN02828 |
formyltetrahydrofolate deformylase |
797-989 |
1.18e-22 |
|
formyltetrahydrofolate deformylase
Pssm-ID: 178422 Cd Length: 268 Bit Score: 98.66 E-value: 1.18e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 797 LKNHFSFEKKKARV---------AVLISGTGSNLQALIDSTREPNSSAQIDVVISNKaaVAGLDK-----AERAGIPTRV 862
Cdd:PLN02828 51 ISKHFKALKSVVRVpgldpkykiAVLASKQDHCLIDLLHRWQDGRLPVDITCVISNH--ERGPNThvmrfLERHGIPYHY 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 863 InHKLYKNRVEfDNAIDLVLeefSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCT 942
Cdd:PLN02828 129 L-PTTKENKRE-DEILELVK---GTDFLVLARYMQILSGNFLKGYGKDIINIHHGLLPSFKGGNPSKQAFDAGVKLIGAT 203
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 1622920952 943 VHFVAEEVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKTFPAALQ 989
Cdd:PLN02828 204 SHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEKQCLAKAIK 250
|
|
| PRK13011 |
PRK13011 |
formyltetrahydrofolate deformylase; Reviewed |
881-984 |
9.83e-21 |
|
formyltetrahydrofolate deformylase; Reviewed
Pssm-ID: 237266 [Multi-domain] Cd Length: 286 Bit Score: 93.51 E-value: 9.83e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 881 VLEEFSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEA 960
Cdd:PRK13011 160 VVEESGAELVVLARYMQVLSPELCRKLAGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQDV 239
|
90 100 110
....*....|....*....|....*....|....*..
gi 1622920952 961 VPVKRGDTVATLS------ERVKLA-------EHKTF 984
Cdd:PRK13011 240 ERVDHAYSPEDLVakgrdvECLTLAravkahiERRVF 276
|
|
| AccC |
COG0439 |
Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway ... |
57-294 |
5.28e-19 |
|
Biotin carboxylase [Lipid transport and metabolism]; Biotin carboxylase is part of the Pathway/BioSystem: Fatty acid biosynthesis
Pssm-ID: 440208 [Multi-domain] Cd Length: 263 Bit Score: 88.01 E-value: 5.28e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 57 ALAQFCKEEKIEFVVVGPEA--PLAAGIVGNLtsaGVRcfGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEAC 134
Cdd:COG0439 8 AAAELARETGIDAVLSESEFavETAAELAEEL---GLP--GPSPEAIRAMRDKVLMREALAAAGVPVPGFALVDSPEEAL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 135 SFILSADFPaLVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPP 214
Cdd:COG0439 83 AFAEEIGYP-VVVKPADGAGSRGVRVVRDEEELEAALAEARAEAKAGSPNGEVLVEEFLEGREYSVEGLVRDGEVVVCSI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 215 AQDHKrllegdGGPNTGGMGAYCPAPqVSNDLLLKIKDTVlQRTVD--GMQqegtpyTGILYAGIMLTKDG-PKVLEFNC 291
Cdd:COG0439 162 TRKHQ------KPPYFVELGHEAPSP-LPEELRAEIGELV-ARALRalGYR------RGAFHTEFLLTPDGePYLIEINA 227
|
...
gi 1622920952 292 RFG 294
Cdd:COG0439 228 RLG 230
|
|
| purU |
PRK13010 |
formyltetrahydrofolate deformylase; Reviewed |
881-984 |
1.97e-18 |
|
formyltetrahydrofolate deformylase; Reviewed
Pssm-ID: 139334 [Multi-domain] Cd Length: 289 Bit Score: 86.77 E-value: 1.97e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 881 VLEEFSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEA 960
Cdd:PRK13010 164 LIETSGAELVVLARYMQVLSDDLSRKLSGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQDV 243
|
90 100 110
....*....|....*....|....*....|....*..
gi 1622920952 961 VPVKRG----DTVA--------TLSERVKL-AEHKTF 984
Cdd:PRK13010 244 ERVDHSyspeDLVAkgrdveclTLARAVKAfIEHRVF 280
|
|
| Fmt |
COG0223 |
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]; |
882-997 |
7.95e-16 |
|
Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis];
Pssm-ID: 439993 [Multi-domain] Cd Length: 308 Bit Score: 79.38 E-value: 7.95e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 882 LEEFSIDIVCLAGFMRILSGPFvrkWN---GKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQ 958
Cdd:COG0223 74 LRALNPDLIVVVAYGQILPKEV---LDiprLGCINLHASLLPRYRGAAPIQWAILNGDTETGVTIMQMDEGLDTGDILLQ 150
|
90 100 110
....*....|....*....|....*....|....*....
gi 1622920952 959 EAVPVKRGDTVATLSERVKLAEHKTFPAALQLVASGTVQ 997
Cdd:COG0223 151 EEVPIGPDDTAGSLHDKLAELGAELLLETLDALEAGTLT 189
|
|
| fmt |
TIGR00460 |
methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than ... |
851-981 |
1.99e-15 |
|
methionyl-tRNA formyltransferase; The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met. [Protein synthesis, tRNA aminoacylation]
Pssm-ID: 273088 [Multi-domain] Cd Length: 313 Bit Score: 78.21 E-value: 1.99e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 851 DKAERAGIPTrvinhkLYKNRVEFDNAIDLVlEEFSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQ 930
Cdd:TIGR00460 50 VLAEEKGIPV------FQPEKQRQLEELPLV-RELKPDVIVVVSFGKILPKEFLDLFPYGCINVHPSLLPRWRGGAPIQR 122
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 1622920952 931 ALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTVATLSErvKLAEH 981
Cdd:TIGR00460 123 AILNGDKKTGVTIMQMVPKMDAGDILKQETFPIEEEDNSGTLSD--KLSEL 171
|
|
| PLN02285 |
PLN02285 |
methionyl-tRNA formyltransferase |
806-975 |
5.15e-15 |
|
methionyl-tRNA formyltransferase
Pssm-ID: 215159 [Multi-domain] Cd Length: 334 Bit Score: 77.43 E-value: 5.15e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 806 KKARVAVLisGT----GSNLQALIDSTREPNSSAQIDVVISNKAAVAGLDK----------AERAGIPTRVINHKLYKNR 871
Cdd:PLN02285 5 RKKRLVFL--GTpevaATVLDALLDASQAPDSAFEVAAVVTQPPARRGRGRklmpspvaqlALDRGFPPDLIFTPEKAGE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 872 VEFDNAidlvLEEFSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVD 951
Cdd:PLN02285 83 EDFLSA----LRELQPDLCITAAYGNILPQKFLDIPKLGTVNIHPSLLPLYRGAAPVQRALQDGVNETGVSVAFTVRALD 158
|
170 180
....*....|....*....|....
gi 1622920952 952 AGQIILQEAVPVKRGDTVATLSER 975
Cdd:PLN02285 159 AGPVIAQERVEVDEDIKAPELLPL 182
|
|
| FMT_core_Met-tRNA-FMT_N |
cd08646 |
Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA ... |
821-1008 |
2.04e-14 |
|
Methionyl-tRNA formyltransferase, N-terminal hydrolase domain; Methionyl-tRNA formyltransferase (Met-tRNA-FMT), N-terminal formyltransferase domain. Met-tRNA-FMT transfers a formyl group from N-10 formyltetrahydrofolate to the amino terminal end of a methionyl-aminoacyl-tRNA acyl moiety, yielding formyl-Met-tRNA. Formyl-Met-tRNA plays essential role in protein translation initiation by forming complex with IF2. The formyl group plays a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. The N-terminal domain contains a Rossmann fold and it is the catalytic domain of the enzyme.
Pssm-ID: 187715 [Multi-domain] Cd Length: 204 Bit Score: 72.86 E-value: 2.04e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 821 LQALIDStrepnssaQIDV--VISNKAAVAGLDK----------AERAGIPtrvinhkLYK-NRVEFDNAIDLvLEEFSI 887
Cdd:cd08646 16 LEALLKS--------GHEVvaVVTQPDKPRGRGKkltpspvkelALELGLP-------VLQpEKLKDEEFLEE-LKALKP 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 888 DIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGD 967
Cdd:cd08646 80 DLIVVVAYGQILPKEILDLPPYGCINVHPSLLPKYRGAAPIQRAILNGDKETGVTIMKMDEGLDTGDILAQEEVPIDPDD 159
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 1622920952 968 TVATLSErvKLAEHktfpAALQLVasGTVQLGENGKICWVK 1008
Cdd:cd08646 160 TAGELLD--KLAEL----GADLLL--EVLDDIEAGKLNPVP 192
|
|
| FMT_core_like_3 |
cd08653 |
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ... |
881-976 |
3.25e-12 |
|
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.
Pssm-ID: 187721 [Multi-domain] Cd Length: 152 Bit Score: 65.31 E-value: 3.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 881 VLEEFSIDIVCLAGfMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQAL-ETGVTVTGCTVHFVAEEVDAGQIILQE 959
Cdd:cd08653 42 ALRALAPDVVSVYG-CGIIKDALLAIPPLGVLNLHGGILPDYRGVHTGFWALaNGDPDNVGVTVHLVDAGIDTGDVLAQA 120
|
90
....*....|....*..
gi 1622920952 960 AVPVKRGDTVATLSERV 976
Cdd:cd08653 121 RPPLAAGDTLLSLYLRL 137
|
|
| DdlA |
COG1181 |
D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, ... |
86-256 |
5.97e-11 |
|
D-alanine-D-alanine ligase or related ATP-grasp enzyme [Cell wall/membrane/envelope biogenesis, General function prediction only]; D-alanine-D-alanine ligase or related ATP-grasp enzyme is part of the Pathway/BioSystem: Mureine biosynthesis
Pssm-ID: 440794 [Multi-domain] Cd Length: 303 Bit Score: 64.74 E-value: 5.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 86 LTSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPA-LVVKASGLAAGKGVIVAKSK 164
Cdd:COG1181 75 LELLGIPYTGSGVLASALAMDKALTKRVLAAAGLPTPPYVVLRRGELADLEAIEEELGLpLFVKPAREGSSVGVSKVKNA 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 165 EEACKAVQEIMQEkafgaaGETIVIEELLDGEEVSCLCFTDGKTVApMPPAQ----------DHKRllegdggpnTGGMG 234
Cdd:COG1181 155 EELAAALEEAFKY------DDKVLVEEFIDGREVTVGVLGNGGPRA-LPPIEivpengfydyEAKY---------TDGGT 218
|
170 180
....*....|....*....|...
gi 1622920952 235 AY-CPAPqVSNDLLLKIKDTVLQ 256
Cdd:COG1181 219 EYiCPAR-LPEELEERIQELALK 240
|
|
| LysX |
COG0189 |
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport ... |
79-290 |
4.61e-10 |
|
Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily [Amino acid transport and metabolism, Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis, Secondary metabolites biosynthesis, transport and catabolism]; Glutathione synthase, LysX or RimK-type ligase, ATP-grasp superfamily is part of the Pathway/BioSystem: Lysine biosynthesis
Pssm-ID: 439959 [Multi-domain] Cd Length: 289 Bit Score: 61.88 E-value: 4.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 79 AAGIVGNLTSAGVRCFGPtAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPaLVVKASGLAAGKGV 158
Cdd:COG0189 70 GLALLRQLEAAGVPVVND-PEAIRRARDKLFTLQLLARAGIPVPPTLVTRDPDDLRAFLEELGGP-VVLKPLDGSGGRGV 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 159 IVAKSKEEAckavQEIMqEKAFGAAGETIVIEELL---DGEEVSCLCFtDGKTVAPM---PPAQDHKRllegdggpNT-- 230
Cdd:COG0189 148 FLVEDEDAL----ESIL-EALTELGSEPVLVQEFIpeeDGRDIRVLVV-GGEPVAAIrriPAEGEFRT--------NLar 213
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622920952 231 GGMGAYCPAPQVSNDLLLKIkdtvlqrtvdgmqqegTPYTGILYAGI--MLTKDGPKVLEFN 290
Cdd:COG0189 214 GGRAEPVELTDEERELALRA----------------APALGLDFAGVdlIEDDDGPLVLEVN 259
|
|
| FMT_core_like_5 |
cd08823 |
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ... |
882-992 |
1.34e-09 |
|
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.
Pssm-ID: 187725 [Multi-domain] Cd Length: 177 Bit Score: 58.23 E-value: 1.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 882 LEEFSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAV 961
Cdd:cd08823 67 LRALAADTVVVFTFPYRIPQHILDLPPLGFYNLHPGLLPAYRGPDPLFWQIRNQEQETAITVHKMTAEIDRGPIVLEQFT 146
|
90 100 110
....*....|....*....|....*....|.
gi 1622920952 962 PVKRGDTVATLSERVKLAEHKTFPAALQLVA 992
Cdd:cd08823 147 PIHPDDTYGLLCSRLAMLAVGLLEELYQNLA 177
|
|
| FMT_core_like_2 |
cd08822 |
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ... |
915-976 |
2.94e-09 |
|
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.
Pssm-ID: 187724 [Multi-domain] Cd Length: 192 Bit Score: 57.86 E-value: 2.94e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622920952 915 HPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTVATLSERV 976
Cdd:cd08822 95 HPSLLPRHRGRDAVEWTIRMRDPITGGTVYHLDDGVDGGPIAAQDWCHVRPGDTAAELWRRA 156
|
|
| PRK12767 |
PRK12767 |
carbamoyl phosphate synthase-like protein; Provisional |
57-294 |
5.40e-09 |
|
carbamoyl phosphate synthase-like protein; Provisional
Pssm-ID: 237195 [Multi-domain] Cd Length: 326 Bit Score: 59.13 E-value: 5.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 57 ALAQFCKEEKIEFVVVG--PEAPLAAGIVGNLTSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQ-WKAFTKPE-E 132
Cdd:PRK12767 60 RLLDICKKEKIDLLIPLidPELPLLAQNRDRFEEIGVKVLVSSKEVIEICNDKWLTYEFLKENGIPTPKsYLPESLEDfK 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 133 ACSFILSADFPaLVVKASGLAAGKGVIVAKSKEEACKAVQEImqekafgaagETIVIEELLDGEE--VSCLCFTDGKTVA 210
Cdd:PRK12767 140 AALAKGELQFP-LFVKPRDGSASIGVFKVNDKEELEFLLEYV----------PNLIIQEFIEGQEytVDVLCDLNGEVIS 208
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 211 PMPpaqdHKRLLEGDGGPNTGGMGAYcpaPQVsNDLLLKIKDTVlqrtvdgmqqegtPYTGILYAGIMLTKDGPKVLEFN 290
Cdd:PRK12767 209 IVP----RKRIEVRAGETSKGVTVKD---PEL-FKLAERLAEAL-------------GARGPLNIQCFVTDGEPYLFEIN 267
|
....
gi 1622920952 291 CRFG 294
Cdd:PRK12767 268 PRFG 271
|
|
| FMT_core_like_6 |
cd08820 |
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ... |
878-972 |
7.54e-09 |
|
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.
Pssm-ID: 187722 [Multi-domain] Cd Length: 173 Bit Score: 56.30 E-value: 7.54e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 878 IDLVLEEFSIDIVCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIIL 957
Cdd:cd08820 61 LLEILENKGVDILISVQYHWILPGSILEKAKEIAFNLHNAPLPEYRGCNQFSHAILNGDDQFGTTIHWMAEGIDSGDIIF 140
|
90
....*....|....*
gi 1622920952 958 QEAVPVKRGDTVATL 972
Cdd:cd08820 141 EKRFPIPSDCTVISL 155
|
|
| PRK08125 |
PRK08125 |
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ... |
912-998 |
2.86e-08 |
|
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA;
Pssm-ID: 236156 [Multi-domain] Cd Length: 660 Bit Score: 57.69 E-value: 2.86e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 912 LNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKTFPAALQLV 991
Cdd:PRK08125 101 FNLHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQQRVAIAPDDTALTLHHKLCHAARQLLEQTLPAI 180
|
....*..
gi 1622920952 992 ASGTVQL 998
Cdd:PRK08125 181 KHGNIPE 187
|
|
| CPSaseII_lrg |
TIGR01369 |
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes ... |
65-292 |
2.97e-08 |
|
carbamoyl-phosphate synthase, large subunit; Carbamoyl-phosphate synthase (CPSase) catalyzes the first committed step in pyrimidine, arginine, and urea biosynthesis. In general, it is a glutamine-dependent enzyme, EC 6.3.5.5, termed CPSase II in eukaryotes. An exception is the mammalian mitochondrial urea-cycle form, CPSase I, in which the glutamine amidotransferase domain active site Cys on the small subunit has been lost, and the enzyme is ammonia-dependent. In both CPSase I and the closely related, glutamine-dependent CPSase III (allosterically activated by acetyl-glutamate) demonstrated in some other vertebrates, the small and large chain regions are fused in a single polypeptide chain. This model represents the large chain of glutamine-hydrolysing carbamoyl-phosphate synthases, or the corresponding regions of larger, multifunctional proteins, as found in all domains of life, and CPSase I forms are considered exceptions within the family. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes. [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]
Pssm-ID: 273581 [Multi-domain] Cd Length: 1050 Bit Score: 58.09 E-value: 2.97e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 65 EKIEFVVVGPEAPLAAGIVGNLTSAGVRCFGPTAEAA-QLESSKRFAkEFMDRHGIPTAQWKAFTKPEEACSFILSADFP 143
Cdd:TIGR01369 628 EKPEGVIVQFGGQTPLNLAKALEEAGVPILGTSPESIdRAEDREKFS-ELLDELGIPQPKWKTATSVEEAVEFASEIGYP 706
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 144 ALvVKASGLAAGKGVIVAKSKEEackaVQEIMQEKAFGAAGETIVIEELL-DGEEVSCLCFTDGKTVApMPPAQDHkrlL 222
Cdd:TIGR01369 707 VL-VRPSYVLGGRAMEIVYNEEE----LRRYLEEAVAVSPEHPVLIDKYLeDAVEVDVDAVSDGEEVL-IPGIMEH---I 777
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 223 EgDGGPNTGGMGAYCPAPQVSNDLLLKIKDTVlQRTVDGMQqegtpYTGILYAGIMLTKDGPKVLEFNCR 292
Cdd:TIGR01369 778 E-EAGVHSGDSTCVLPPQTLSAEIVDRIKDIV-RKIAKELN-----VKGLMNIQFAVKDGEVYVIEVNPR 840
|
|
| FMT_core_NRPS_like |
cd08649 |
N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins ... |
836-972 |
3.31e-08 |
|
N-terminal formyl transferase catalytic core domain of NRPS_like proteins, one of the proteins involved in the synthesis of Oxazolomycin; This family represents the N-terminal formyl transferase catalytic core domain present in a subgroup of non-ribosomal peptide synthetases. In Streptomyces albus a member of this family has been shown to be involved in the synthesis of oxazolomycin (OZM). OZM is a hybrid peptide-polyketide antibiotic and exhibits potent antitumor and antiviral activities. It is a multi-domain protein consisting of a formyl transferase domain, a Flavin-utilizing monoxygenase domain, a LuxE domain functioning as an acyl protein synthetase and a pp-binding domain, which may function as an acyl carrier. It shows sequence similarity with other peptide-polyketide biosynthesis proteins.
Pssm-ID: 187718 [Multi-domain] Cd Length: 166 Bit Score: 54.19 E-value: 3.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 836 QIDVVISNKAAVAglDKAERAGIPtrvinhklyknRVEFDNAIDLVLEEFSID----IVCLagfmRILSGPFVRKWNGKM 911
Cdd:cd08649 24 RIAAVVSTDPAIR--AWAAAEGIA-----------VLEPGEALEELLSDEPFDwlfsIVNL----RILPSEVLALPRKGA 86
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622920952 912 LNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTVATL 972
Cdd:cd08649 87 INFHDGPLPRYAGLNATSWALLAGETRHGVTWHRIEEGVDAGDILVQRPFDIAPDDTALSL 147
|
|
| PRK06988 |
PRK06988 |
formyltransferase; |
912-996 |
3.69e-08 |
|
formyltransferase;
Pssm-ID: 235902 [Multi-domain] Cd Length: 312 Bit Score: 56.24 E-value: 3.69e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 912 LNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKTFPAALQLV 991
Cdd:PRK06988 103 YNMHGSLLPKYRGRVPVNWAVLNGETETGATLHEMVAKPDAGAIVDQTAVPILPDDTAAQVFDKVTVAAEQTLWRVLPAL 182
|
....*
gi 1622920952 992 ASGTV 996
Cdd:PRK06988 183 LAGEA 187
|
|
| FMT_core_ArnA_N |
cd08644 |
ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for ... |
912-996 |
3.99e-08 |
|
ArnA, N-terminal formyltransferase domain; ArnA_N: ArnA is a bifunctional enzyme required for the modification of lipid A with 4-amino-4-deoxy-L-arabinose (Ara4N) that leads to resistance to cationic antimicrobial peptides (CAMPs) and clinical antimicrobials such as polymyxin. The C-terminal dehydrogenase domain of ArnA catalyzes the oxidative decarboxylation of UDP-glucuronic acid (UDP-GlcUA) to UDP-4-keto-arabinose (UDP-Ara4O), while the N-terminal formyltransferase domain of ArnA catalyzes the addition of a formyl group to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N) to form UDP-L-4-formamido-arabinose (UDP-L-Ara4FN). This domain family represents the catalytic core of the N-terminal formyltransferase domain. The formyltransferase also contains a smaller C-terminal domain the may be involved in substrate binding. ArnA forms a hexameric structure, in which the dehydrogenase domains are arranged at the center of the particle with the transformylase domains on the outside of the particle.
Pssm-ID: 187713 [Multi-domain] Cd Length: 203 Bit Score: 54.66 E-value: 3.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 912 LNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKTFPAALQLV 991
Cdd:cd08644 101 FNLHGSLLPKYRGRAPLNWALINGETETGVTLHRMTKKPDAGAIVDQEKVPILPDDTAKSLFHKLCVAARRLLARTLPAL 180
|
....*
gi 1622920952 992 ASGTV 996
Cdd:cd08644 181 KAGKA 185
|
|
| COG3919 |
COG3919 |
Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only]; |
1-294 |
4.28e-08 |
|
Predicted ATP-dependent carboligase, ATP-grasp superfamily [General function prediction only];
Pssm-ID: 443124 [Multi-domain] Cd Length: 382 Bit Score: 56.48 E-value: 4.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 1 MAARVLIIGsgGREHTLAwkLAQSHH---VKQVLV-----APGNAGTACSEKISNNAISTSDHT---ALAQFCKEEKIEF 69
Cdd:COG3919 4 MRFRVVVLG--GDINALA--VARSLGeagVRVIVVdrdplGPAARSRYVDEVVVVPDPGDDPEAfvdALLELAERHGPDV 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 70 VV-VGPEAPLAagIVGNLT--SAGVRCFGPTAEA-AQLESSKRFAkEFMDRHGIPTAQWKAFTKPEEACSFILSADFPaL 145
Cdd:COG3919 80 LIpTGDEYVEL--LSRHRDelEEHYRLPYPDADLlDRLLDKERFY-ELAEELGVPVPKTVVLDSADDLDALAEDLGFP-V 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 146 VVKAS--------GLAAGKGVIVAKSKEEACKAVQEImqekafGAAGETIVIEELLDGEE-----VSCLCFTDGKTVApm 212
Cdd:COG3919 156 VVKPAdsvgydelSFPGKKKVFYVDDREELLALLRRI------AAAGYELIVQEYIPGDDgemrgLTAYVDRDGEVVA-- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 213 ppAQDHKRLLEgdgGPNTGGMGAYCPApqVSNDLLLKIKDTVLqrtvdgmqqEGTPYTGILYAGIMLT-KDG-PKVLEFN 290
Cdd:COG3919 228 --TFTGRKLRH---YPPAGGNSAARES--VDDPELEEAARRLL---------EALGYHGFANVEFKRDpRDGeYKLIEIN 291
|
....
gi 1622920952 291 CRFG 294
Cdd:COG3919 292 PRFW 295
|
|
| FMT_core_like_4 |
cd08651 |
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; ... |
821-979 |
1.94e-07 |
|
Formyl transferase catalytic core domain found in a group of proteins with unknown functions; Formyl transferase catalytic core domain found in a group of proteins with unknown functions. Formyl transferase catalyzes the transfer of one-carbon groups, specifically the formyl- or hydroxymethyl- group. This domain contains a Rossmann fold and it is the catalytic domain of the enzyme.
Pssm-ID: 187720 [Multi-domain] Cd Length: 180 Bit Score: 52.27 E-value: 1.94e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 821 LQALIDSTREpnssaqIDVVISNKAAVAG--------LDKAERAGIP---TRVINhklyknrvefDNAIDLVLEEFSIDI 889
Cdd:cd08651 15 LEAILEAGGE------VVGVITLDDSSSNndsdyldlDSFARKNGIPyykFTDIN----------DEEIIEWIKEANPDI 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 890 VCLAGFMRILSGPFVRKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTV 969
Cdd:cd08651 79 IFVFGWSQLLKPEILAIPRLGVIGFHPTKLPKNRGRAPIPWAILLGLKETASTFFWMDEGADSGDILSQEPFPIDKDDTA 158
|
170
....*....|
gi 1622920952 970 ATLSERVKLA 979
Cdd:cd08651 159 NSLYDKIMEA 168
|
|
| carB |
PRK12815 |
carbamoyl phosphate synthase large subunit; Reviewed |
62-209 |
1.99e-07 |
|
carbamoyl phosphate synthase large subunit; Reviewed
Pssm-ID: 237215 [Multi-domain] Cd Length: 1068 Bit Score: 55.36 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 62 CKEEKIEFVVVGPEAPLAAGIVGNLTSAGVRCFGPTAEAA-QLESSKRFaKEFMDRHGIPTAQWKAFTKPEEACSFILSA 140
Cdd:PRK12815 626 AEAENIKGVIVQFGGQTAINLAKGLEEAGLTILGTSPDTIdRLEDRDRF-YQLLDELGLPHVPGLTATDEEEAFAFAKRI 704
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622920952 141 DFPALvVKASGLAAGKGVIVAKSKeeacKAVQEIMQEKAfgAAGETIVIEELLDGEEVSCLCFTDGKTV 209
Cdd:PRK12815 705 GYPVL-IRPSYVIGGQGMAVVYDE----PALEAYLAENA--SQLYPILIDQFIDGKEYEVDAISDGEDV 766
|
|
| PRK08654 |
PRK08654 |
acetyl-CoA carboxylase biotin carboxylase subunit; |
53-193 |
2.44e-07 |
|
acetyl-CoA carboxylase biotin carboxylase subunit;
Pssm-ID: 236325 [Multi-domain] Cd Length: 499 Bit Score: 54.60 E-value: 2.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 53 SDHTALAQFCKEEKIEFVvvgpeaplaagivgnltsagvrcfGPTAEAAQLESSKRFAKEFMDRHGIPTAQW--KAFTKP 130
Cdd:PRK08654 86 AENPEFAKACEKAGIVFI------------------------GPSSDVIEAMGSKINAKKLMKKAGVPVLPGteEGIEDI 141
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622920952 131 EEACSFILSADFPaLVVKASGLAAGKGVIVAKSKEEACKAVQEIMQ--EKAFGAAgeTIVIEELL 193
Cdd:PRK08654 142 EEAKEIAEEIGYP-VIIKASAGGGGIGMRVVYSEEELEDAIESTQSiaQSAFGDS--TVFIEKYL 203
|
|
| PurK |
COG0026 |
Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and ... |
111-199 |
9.99e-07 |
|
Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]; Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) is part of the Pathway/BioSystem: Purine biosynthesis
Pssm-ID: 439797 [Multi-domain] Cd Length: 353 Bit Score: 52.00 E-value: 9.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 111 KEFMDRHGIPTAQWKAFTKPEEACSFILSADFPAlVVKasglAA-----GKGVIVAKSKEEACKAVQEImqekafgaAGE 185
Cdd:COG0026 94 KAFLAELGIPVAPFAAVDSLEDLEAAIAELGLPA-VLK----TRrggydGKGQVVIKSAADLEAAWAAL--------GGG 160
|
90
....*....|....*
gi 1622920952 186 TIVIEELLDGE-EVS 199
Cdd:COG0026 161 PCILEEFVPFErELS 175
|
|
| ATP-grasp_2 |
pfam08442 |
ATP-grasp domain; |
110-194 |
1.23e-06 |
|
ATP-grasp domain;
Pssm-ID: 400651 [Multi-domain] Cd Length: 202 Bit Score: 50.34 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 110 AKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGK----GVIVAKSKEEACKAVQEIM-------QEK 178
Cdd:pfam08442 7 AKEIFAKYGIPVPRGEVATSPEEAEEIAKKLGGKVYVVKAQVLAGGRgkagGVKLAKSPEEAKEVAKEMLgknlvtkQTG 86
|
90
....*....|....*.
gi 1622920952 179 AFGAAGETIVIEELLD 194
Cdd:pfam08442 87 PDGQPVNKVLVEEALD 102
|
|
| FMT_core_FDH_N |
cd08647 |
10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain; This family ... |
915-995 |
6.44e-06 |
|
10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain; This family represents the N-terminal hydrolase domain of the bifunctional protein 10-formyltetrahydrofolate dehydrogenase (FDH). This domain contains a 10-formyl-tetrahydrofolate (10-formyl-THF) binding site and shares sequence homology and structural topology with other enzymes utilizing this substrate. This domain functions as a hydrolase, catalyzing the conversion of 10-formyl-THF, a precursor for nucleotide biosynthesis, to tetrahydrofolate (THF). The overall FDH reaction mechanism is a coupling of two sequential reactions, a hydrolase and a formyl dehydrogenase, bridged by a substrate transfer step. The N-terminal hydrolase domain removes the formyl group from 10-formyl-THF and the C-terminal NADP-dependent dehydrogenase domain then reduces the formyl group to carbon dioxide. The two catalytic domains are connected by a third intermediate linker domain that transfers the formyl group, covalently attached to the sulfhydryl group of the phosphopantetheine arm, from the N-terminal domain to the C-terminal domain.
Pssm-ID: 187716 [Multi-domain] Cd Length: 203 Bit Score: 48.21 E-value: 6.44e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 915 HPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEEVDAGQIILQEAVPVKRGDTVATLSERVKLAEH-KTFPAALQLVAS 993
Cdd:cd08647 106 HPSILPRHRGASAINWTLIHGDKKAGFTIFWADDGLDTGPILLQKECDVLPNDTVDTLYNRFLYPEGiKAMVEAVRLIAE 185
|
..
gi 1622920952 994 GT 995
Cdd:cd08647 186 GK 187
|
|
| ATP-grasp |
pfam02222 |
ATP-grasp domain; This family does not contain all known ATP-grasp domain members. This family ... |
115-220 |
1.15e-05 |
|
ATP-grasp domain; This family does not contain all known ATP-grasp domain members. This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Pssm-ID: 396689 [Multi-domain] Cd Length: 169 Bit Score: 46.86 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 115 DRHGIPTAQWKAFTKPEEACSFILSADFPAlVVKASGLA-AGKGVIVAKSKEEACKAVQEimqekafgAAGETIVIEELL 193
Cdd:pfam02222 1 QKLGLPTPRFMAAESLEELIEAGQELGYPC-VVKARRGGyDGKGQYVVRSEADLPQAWEE--------LGDGPVIVEEFV 71
|
90 100 110
....*....|....*....|....*....|
gi 1622920952 194 DGE-EVSCLC--FTDGKTVAPmPPAQDHKR 220
Cdd:pfam02222 72 PFDrELSVLVvrSVDGETAFY-PVVETIQE 100
|
|
| PRK06019 |
PRK06019 |
phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed |
1-199 |
1.35e-05 |
|
phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Pssm-ID: 235674 [Multi-domain] Cd Length: 372 Bit Score: 48.61 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 1 MAARVLIIGSGgrehTLAWKLAQS-----HHVkqVLVAPGNAGTACSekISNNAI--STSDHTALAQFCKE------EkI 67
Cdd:PRK06019 1 GMKTIGIIGGG----QLGRMLALAaaplgYKV--IVLDPDPDSPAAQ--VADEVIvaDYDDVAALRELAEQcdvityE-F 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 68 EFVvvgPEAPLAAgivgnltSAGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPAlVV 147
Cdd:PRK06019 72 ENV---PAEALDA-------LAARVPVPPGPDALAIAQDRLTEKQFLDKLGIPVAPFAVVDSAEDLEAALADLGLPA-VL 140
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622920952 148 KasglAA-----GKGVIVAKSKEEACKAVQEImqekafgaAGETIVIEELLDGE-EVS 199
Cdd:PRK06019 141 K----TRrggydGKGQWVIRSAEDLEAAWALL--------GSVPCILEEFVPFErEVS 186
|
|
| ThiL |
cd02194 |
ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage ... |
512-620 |
6.08e-05 |
|
ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Pssm-ID: 100030 [Multi-domain] Cd Length: 291 Bit Score: 46.01 E-value: 6.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 512 IGQDLVAMCVNDILAQGAEPLFFLdyfscgkldLSVT----------EAVVAGIAKACGKAGCALLGGETAEMPDMYppg 581
Cdd:cd02194 59 IGWKALAVNLSDLAAMGARPLGFL---------LSLGlppdtdeewlEEFYRGLAEAADRYGVPLVGGDTTSGSELV--- 126
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1622920952 582 eydLAGFAVGAMERDQKLPhleR--ITEGDVVV-----GIASSGLH 620
Cdd:cd02194 127 ---ISVTALGEVEKGKPLR---RsgAKPGDLLYvtgtlGDAAAGLA 166
|
|
| rimK_fam |
TIGR00768 |
alpha-L-glutamate ligase, RimK family; This family, related to bacterial glutathione ... |
86-290 |
6.65e-05 |
|
alpha-L-glutamate ligase, RimK family; This family, related to bacterial glutathione synthetases, contains at least three different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Pssm-ID: 273261 [Multi-domain] Cd Length: 276 Bit Score: 45.80 E-value: 6.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 86 LTSAGVRCFGPTaEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPAlVVKASGLAAGKGVIVAKSKE 165
Cdd:TIGR00768 69 LESLGVPVINSS-DAILNAGDKFLSHQLLAKAGIPLPRTGLAGSPEEALKLIEEIGFPV-VLKPVFGSWGRGVSLARDRQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 166 EACKAvqeIMQEKAFGAAGETIVIEELLD---GEEVSCLCfTDGKTVAPMppaqdhKRLLEGDGGPNT--GGMGAYCPAP 240
Cdd:TIGR00768 147 AAESL---LEHFEQLNGPQNLFLVQEYIKkpgGRDIRVFV-VGDEVVAAI------YRITSGHWRSNLarGGKAEPCSLT 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1622920952 241 QVSNDLLLKIKDTVlqrtvdgmqqegtpytGILYAGIML--TKDGPKVLEFN 290
Cdd:TIGR00768 217 EEIEELAIKAAKAL----------------GLDVAGVDLleSEDGLLVNEVN 252
|
|
| CarB |
COG0458 |
Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide ... |
78-207 |
7.10e-05 |
|
Carbamoylphosphate synthase large subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Carbamoylphosphate synthase large subunit is part of the Pathway/BioSystem: Arginine biosynthesis
Pssm-ID: 440226 [Multi-domain] Cd Length: 536 Bit Score: 46.80 E-value: 7.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 78 LAAGIVGNLTSAGVRCFGPTAEAAQL-ESSKRFaKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPaLVVKAS---Gla 153
Cdd:COG0458 86 LAVELEEAGILEGVKILGTSPDAIDLaEDRELF-KELLDKLGIPQPKSGTATSVEEALAIAEEIGYP-VIVRPSyvlG-- 161
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622920952 154 aGKGVIVAKSKEEackaVQEIMqEKAFGAAGET-IVIEELLDG--E-EVSCLCftDGK 207
Cdd:COG0458 162 -GRGMGIVYNEEE----LEEYL-ERALKVSPDHpVLIDESLLGakEiEVDVVR--DGE 211
|
|
| carB |
PRK12815 |
carbamoyl phosphate synthase large subunit; Reviewed |
78-198 |
1.73e-04 |
|
carbamoyl phosphate synthase large subunit; Reviewed
Pssm-ID: 237215 [Multi-domain] Cd Length: 1068 Bit Score: 45.73 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 78 LAAGIvgnLTSAGVRCFGPTAEAAQL-ESSKRFaKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLaAGK 156
Cdd:PRK12815 103 HEDGI---LEQYGVELLGTNIEAIQKgEDRERF-RALMKELGEPVPESEIVTSVEEALAFAEKIGFPIIVRPAYTL-GGT 177
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 1622920952 157 GVIVAKSKEEACKAVQEIMQEKAFgaagETIVIEELLDG-EEV 198
Cdd:PRK12815 178 GGGIAENLEELEQLFKQGLQASPI----HQCLLEESIAGwKEI 216
|
|
| sucC |
PRK00696 |
ADP-forming succinate--CoA ligase subunit beta; |
110-194 |
2.87e-04 |
|
ADP-forming succinate--CoA ligase subunit beta;
Pssm-ID: 234813 [Multi-domain] Cd Length: 388 Bit Score: 44.31 E-value: 2.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 110 AKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGK----GVIVAKSKEEACKAVQEI--MQ--EKAFG 181
Cdd:PRK00696 8 AKELFAKYGVPVPRGIVATTPEEAVEAAEELGGGVWVVKAQVHAGGRgkagGVKLAKSPEEAREFAKQIlgMTlvTHQTG 87
|
90
....*....|....*.
gi 1622920952 182 AAGET---IVIEELLD 194
Cdd:PRK00696 88 PKGQPvnkVLVEEGAD 103
|
|
| PRK05586 |
PRK05586 |
acetyl-CoA carboxylase biotin carboxylase subunit; |
53-194 |
3.00e-04 |
|
acetyl-CoA carboxylase biotin carboxylase subunit;
Pssm-ID: 180150 [Multi-domain] Cd Length: 447 Bit Score: 44.32 E-value: 3.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 53 SDHTALAQFCKEEKIEFVvvgpeaplaagivgnltsagvrcfGPTAEAAQLESSKRFAKEFMDRHGIPT--AQWKAFTKP 130
Cdd:PRK05586 86 SENSKFAKMCKECNIVFI------------------------GPDSETIELMGNKSNAREIMIKAGVPVvpGSEGEIENE 141
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622920952 131 EEACSFILSADFPaLVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKAFGAAGETIVIEELLD 194
Cdd:PRK05586 142 EEALEIAKEIGYP-VMVKASAGGGGRGIRIVRSEEELIKAFNTAKSEAKAAFGDDSMYIEKFIE 204
|
|
| ATP-grasp_4 |
pfam13535 |
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent ... |
142-209 |
4.17e-04 |
|
ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent carboxylate-amine ligase activity.
Pssm-ID: 316093 [Multi-domain] Cd Length: 160 Bit Score: 41.89 E-value: 4.17e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622920952 142 FPaLVVKASGLAAGKGVIVAKSKEE---ACKAVQEIMQE-----KAFGAAGETIVIEELLDGEEVSCLCF--TDGKTV 209
Cdd:pfam13535 3 YP-CVIKPSVGFFSVGVYKINNREEwkaAFAAIREEIEQwkemyPEAVVDGGSFLVEEYIEGEEFAVDAYfdENGEPV 79
|
|
| PRK06111 |
PRK06111 |
acetyl-CoA carboxylase biotin carboxylase subunit; Validated |
53-209 |
6.03e-04 |
|
acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Pssm-ID: 180406 [Multi-domain] Cd Length: 450 Bit Score: 43.48 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 53 SDHTALAQFCKEEKIEFVvvgpeaplaagivgnltsagvrcfGPTAEAAQLESSKRFAKEFMDRHGIPTAQW--KAFTKP 130
Cdd:PRK06111 86 SENASFAERCKEEGIVFI------------------------GPSADIIAKMGSKIEARRAMQAAGVPVVPGitTNLEDA 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 131 EEACSFILSADFPaLVVKASGLAAGKGVIVAKSKEEACKAVqEIMQEKAFGAAGE-TIVIEELLDGE---EVSCLCFTDG 206
Cdd:PRK06111 142 EEAIAIARQIGYP-VMLKASAGGGGIGMQLVETEQELTKAF-ESNKKRAANFFGNgEMYIEKYIEDPrhiEIQLLADTHG 219
|
...
gi 1622920952 207 KTV 209
Cdd:PRK06111 220 NTV 222
|
|
| SucC |
COG0045 |
Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Succinyl-CoA ... |
110-194 |
8.08e-04 |
|
Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Succinyl-CoA synthetase, beta subunit is part of the Pathway/BioSystem: TCA cycle
Pssm-ID: 439815 [Multi-domain] Cd Length: 388 Bit Score: 43.12 E-value: 8.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 110 AKEFMDRHGIPTAQWKAFTKPEEACSFILSADFPALVVKASGLAAGK----GVIVAKSKEEACKAVQEIM----QEKAFG 181
Cdd:COG0045 8 AKELLAKYGVPVPRGIVATTPEEAVAAAEELGGPPVVVKAQVHAGGRgkagGVKLAKSPEEAREAAEEILgmtlVTHQTG 87
|
90
....*....|....*.
gi 1622920952 182 AAG---ETIVIEELLD 194
Cdd:COG0045 88 PKGkpvNKVLVEEGVD 103
|
|
| ATP-grasp_3 |
pfam02655 |
ATP-grasp domain; No functional information or experimental verification of function is known ... |
105-296 |
9.17e-04 |
|
ATP-grasp domain; No functional information or experimental verification of function is known in this family. This family appears to be an ATP-grasp domain (Pers. obs. A Bateman).
Pssm-ID: 396979 [Multi-domain] Cd Length: 160 Bit Score: 40.83 E-value: 9.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 105 SSKRFAKEFMDRHGIPTaqwkaftkPEEACSFILSADFPALVVKASGLAAGKGVIVAKSKEEACkavqeimqekafgAAG 184
Cdd:pfam02655 2 SDKLKTYKALKNAGVPT--------PETLQAEELLREEKKYVVKPRDGCGGEGVRKVENGREDE-------------AFI 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 185 ETIVIEELLDGEEVSCLCFTDGKTVAPMPPaqdHKRLLEGDGGPN--TGGMGaycPAPQVSNDLLLKIKDTVLQRtvdgm 262
Cdd:pfam02655 61 ENVLVQEFIEGEPLSVSLLSDGEKALPLSV---NRQYIDNGGSGFvyAGNVT---PSRTELKEEIIELAEEVVEC----- 129
|
170 180 190
....*....|....*....|....*....|....*..
gi 1622920952 263 qqegtpYTGIL-YAGI--MLTKDGPKVLEFNCRFGDP 296
Cdd:pfam02655 130 ------LPGLRgYVGVdlVLKDNEPYVIEVNPRITTS 160
|
|
| Dala_Dala_lig_C |
pfam07478 |
D-ala D-ala ligase C-terminus; This family represents the C-terminal, catalytic domain of the ... |
113-200 |
1.58e-03 |
|
D-ala D-ala ligase C-terminus; This family represents the C-terminal, catalytic domain of the D-alanine--D-alanine ligase enzyme EC:6.3.2.4. D-Alanine is one of the central molecules of the cross-linking step of peptidoglycan assembly. There are three enzymes involved in the D-alanine branch of peptidoglycan biosynthesis: the pyridoxal phosphate-dependent D-alanine racemase (Alr), the ATP-dependent D-alanine:D-alanine ligase (Ddl), and the ATP-dependent D-alanine:D-alanine-adding enzyme (MurF).
Pssm-ID: 429483 [Multi-domain] Cd Length: 204 Bit Score: 40.76 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 113 FMDRHGIPTAQWKAFTK------PEEACSFILSA-DFPaLVVKASGLAAGKGVIVAKSKEEACKAVQEIMQEKafgaagE 185
Cdd:pfam07478 1 LLKAAGLPVVPFVTFTRadwklnPKEWCAQVEEAlGYP-VFVKPARLGSSVGVSKVESREELQAAIEEAFQYD------E 73
|
90
....*....|....*
gi 1622920952 186 TIVIEELLDGEEVSC 200
Cdd:pfam07478 74 KVLVEEGIEGREIEC 88
|
|
| HypE |
cd02197 |
HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase ... |
521-612 |
1.66e-03 |
|
HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Pssm-ID: 100033 [Multi-domain] Cd Length: 293 Bit Score: 41.67 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 521 VNDILAQGAEPLffldYFSCG-----KLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDmyppGEYD-----LAGfaV 590
Cdd:cd02197 67 VNDLAMMGAKPL----YLSLGfileeGFPLEDLERIVKSMAEAAREAGVKIVTGDTKVVPK----GKADgifinTTG--I 136
|
90 100
....*....|....*....|..
gi 1622920952 591 GAMERDQKLpHLERITEGDVVV 612
Cdd:cd02197 137 GVIPRGVII-SPSNIRPGDKII 157
|
|
| ddl |
PRK01966 |
D-alanine--D-alanine ligase; |
89-200 |
1.70e-03 |
|
D-alanine--D-alanine ligase;
Pssm-ID: 234993 [Multi-domain] Cd Length: 333 Bit Score: 41.64 E-value: 1.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622920952 89 AGVRCFGPTAEAAQLESSKRFAKEFMDRHGIPTAQWKAFTKPEEACSFILSA----DFPaLVVKASGLAAGKGVIVAKSK 164
Cdd:PRK01966 106 LGIPYVGCGVLASALSMDKILTKRLLAAAGIPVAPYVVLTRGDWEEASLAEIeaklGLP-VFVKPANLGSSVGISKVKNE 184
|
90 100 110
....*....|....*....|....*....|....*.
gi 1622920952 165 EEACKAVqeimqEKAFGAAgETIVIEELLDGEEVSC 200
Cdd:PRK01966 185 EELAAAL-----DLAFEYD-RKVLVEQGIKGREIEC 214
|
|
| PRK05731 |
PRK05731 |
thiamine monophosphate kinase; Provisional |
518-577 |
4.58e-03 |
|
thiamine monophosphate kinase; Provisional
Pssm-ID: 235583 [Multi-domain] Cd Length: 318 Bit Score: 40.20 E-value: 4.58e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622920952 518 AMCVN--DILAQGAEPLFFLdyFSCG---KLDLSVTEAVVAGIAKACGKAGCALLGGETAEMPDM 577
Cdd:PRK05731 66 ALAVNlsDLAAMGARPAAFL--LALAlpkDLDEAWLEALADGLFELADRYGAELIGGDTTRGPDL 128
|
|
| PRK07579 |
PRK07579 |
dTDP-4-amino-4,6-dideoxyglucose formyltransferase; |
912-984 |
6.22e-03 |
|
dTDP-4-amino-4,6-dideoxyglucose formyltransferase;
Pssm-ID: 236058 [Multi-domain] Cd Length: 245 Bit Score: 39.50 E-value: 6.22e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622920952 912 LNIHPSLLPSFKGSNAHEQALETGVTVtGCTVHFVAEEVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKTF 984
Cdd:PRK07579 89 INIHPGFNPYNRGWFPQVFSIINGLKI-GATIHEMDEQLDHGPIIAQREVEIESWDSSGSVYARVMDIERELV 160
|
|
| |
