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Conserved domains on  [gi|966930836|ref|XP_014988117|]
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leucine-rich repeat and calponin homology domain-containing protein 3 isoform X2 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CH_SF super family cl00030
calponin homology (CH) domain superfamily; CH domains are actin filament (F-actin) binding ...
 633-742 3.17e-61

calponin homology (CH) domain superfamily; CH domains are actin filament (F-actin) binding motifs, which may be present as a single copy or in tandem repeats (which increase binding affinity). They either function as autonomous actin binding motifs or serve a regulatory function. CH domains are found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, as well as proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).


The actual alignment was detected with superfamily member cd21270:

Pssm-ID: 469584  Cd Length: 112  Bit Score: 201.62  E-value: 3.17e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 633 EELELIDQLRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIG 712
Cdd:cd21270    1 EERELTEQLRENIETRLKVSLPEDLGAALMDGVVLCHLVNHVRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKIG 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 966930836 713 VPQDNLCSPSDILQLNL-SVKRTVETLLSLG 742
Cdd:cd21270   81 VPEADLCSPYDILQLNLrGIRKTVETLLALG 111
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
80-286 6.05e-43

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 161.25  E-value: 6.05e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  80 DLTDTTRADLSRNRLSEIPIEACHFVSLENLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLP-LKVLIAS 158
Cdd:COG4886  111 NLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTnLKELDLS 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 159 NNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPeELAELP-LIRLDFSCNKITTIPVCY 237
Cdd:COG4886  191 NNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTnLEELDLSNNQLTDLPPLA 269

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 966930836 238 rNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDY 286
Cdd:COG4886  270 -NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILL 317
DUF874 super family cl26645
Helicobacter pylori protein of unknown function (DUF874); This family consists of several ...
 427-590 2.31e-04

Helicobacter pylori protein of unknown function (DUF874); This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam05917:

Pssm-ID: 283549 [Multi-domain]  Cd Length: 398  Bit Score: 44.46  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  427 REFQKTEDMRRYLHQNRVPVEpSSLLSLSASHNQLSHTDLELHRRReQLVERTRREAQLAALQYEEEKIRTKQIQRDAVL 506
Cdd:pfam05917 131 QEKKEAENAEDRANKNGIELE-QEKQKTNKSGIELANNQIKAEQEQ-QKTEQEKQKAEKEAIELEQEKQKTIKTQRDLIK 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  507 ---DFVK--QKASQSPQKQQPLLDGESLSGLN---QVGCAAPLPHSSAFTPLKSDDRPNTllSSPTTEtvHHSSAYAFPA 578
Cdd:pfam05917 209 eqkDFIKetEQNCQENHNQFFIEKGGIKAGIAievEAECKTPKPAKTNQTPIQPKHLPNS--KQPHSQ--RGSKAQEFIA 284

                         170
                  ....*....|..
gi 966930836  579 AIQRNQPQRPES 590
Cdd:pfam05917 285 YLQKELEFLPYS 296
 
Name Accession Description Interval E-value
CH_LRCH1 cd21270
calponin homology (CH) domain found in leucine-rich repeat and calponin homology ...
 633-742 3.17e-61

calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 1; Leucine-rich repeat and calponin homology domain-containing protein 1 (LRCH1), also called calponin homology domain-containing protein 1, or neuronal protein 81 (NP81), acts as a negative regulator of GTPase CDC42 by sequestering CDC42-guanine exchange factor DOCK8. LRCH1 contains a single copy of the CH domain at the C-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409119  Cd Length: 112  Bit Score: 201.62  E-value: 3.17e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 633 EELELIDQLRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIG 712
Cdd:cd21270    1 EERELTEQLRENIETRLKVSLPEDLGAALMDGVVLCHLVNHVRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKIG 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 966930836 713 VPQDNLCSPSDILQLNL-SVKRTVETLLSLG 742
Cdd:cd21270   81 VPEADLCSPYDILQLNLrGIRKTVETLLALG 111
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
80-286 6.05e-43

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 161.25  E-value: 6.05e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  80 DLTDTTRADLSRNRLSEIPIEACHFVSLENLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLP-LKVLIAS 158
Cdd:COG4886  111 NLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTnLKELDLS 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 159 NNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPeELAELP-LIRLDFSCNKITTIPVCY 237
Cdd:COG4886  191 NNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTnLEELDLSNNQLTDLPPLA 269

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 966930836 238 rNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDY 286
Cdd:COG4886  270 -NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILL 317
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
81-234 8.00e-14

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 75.50  E-value: 8.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  81 LTDTTR-ADLSRNRLSEIPIeacHFVS-LENLNLYQNCIRYIPEAILnlQALTFLNISRNQLSTLPVHL----------- 147
Cdd:PRK15370 239 LPDTIQeMELSINRITELPE---RLPSaLQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLpsgithlnvqs 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 148 -------CNLP--LKVLIASNNKLVSLPEEIGhlRHLMELDVSCNEIQTIPSQIGnlEALRDLNVRRNHLVHLPEELAEl 218
Cdd:PRK15370 314 nsltalpETLPpgLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLPA- 388

                        170
                 ....*....|....*.
gi 966930836 219 PLIRLDFSCNKITTIP 234
Cdd:PRK15370 389 ALQIMQASRNNLVRLP 404
CH smart00033
Calponin homology domain; Actin binding domains present in duplicate at the N-termini of ...
 639-741 4.17e-13

Calponin homology domain; Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.


Pssm-ID: 214479 [Multi-domain]  Cd Length: 101  Bit Score: 65.80  E-value: 4.17e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836   639 DQLRKHIEYRLKVALPC---DLGAALTDGVVLCHLANHVRPRSVPSIHVPspavPKLTMAKCRRNVENFLEACRKIGVPQ 715
Cdd:smart00033   1 KTLLRWVNSLLAEYDKPpvtNFSSDLKDGVALCALLNSLSPGLVDKKKVA----ASLSRFKKIENINLALSFAEKLGGKV 76

                           90       100
                   ....*....|....*....|....*.
gi 966930836   716 DNLcSPSDILQLNLSVKRTVETLLSL 741
Cdd:smart00033  77 VLF-EPEDLVEGPKLILGVIWTLISL 101
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 89-212 4.47e-12

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 66.35  E-value: 4.47e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  89 LSRNRLSEI-PIEAChfVSLENLNLYQNCIRYIpEAILNLQALTFLNISRNQLStLPVHLCNLP---------LKVLIAS 158
Cdd:cd21340   53 LQNNQIEKIeNLENL--VNLKKLYLGGNRISVV-EGLENLTNLEELHIENQRLP-PGEKLTFDPrslaalsnsLRVLNIS 128

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 966930836 159 NNKLVSLpEEIGHLRHLMELDVSCNEIQTIPSQ---IGNLEALRDLNVRRNHLVHLP 212
Cdd:cd21340  129 GNNIDSL-EPLAPLRNLEQLDASNNQISDLEELldlLSSWPSLRELDLTGNPVCKKP 184
CH pfam00307
Calponin homology (CH) domain; The CH domain is found in both cytoskeletal proteins and signal ...
 635-744 4.95e-09

Calponin homology (CH) domain; The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy.


Pssm-ID: 425596 [Multi-domain]  Cd Length: 109  Bit Score: 54.60  E-value: 4.95e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  635 LELIDQLRKHIEYRLKVALPC----DLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVpkltmaKCRRNVENFLE-ACR 709
Cdd:pfam00307   1 LELEKELLRWINSHLAEYGPGvrvtNFTTDLRDGLALCALLNKLAPGLVDKKKLNKSEF------DKLENINLALDvAEK 74

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 966930836  710 KIGVPQDNLcSPSDILQLNLsvKRTVETLLSLGAH 744
Cdd:pfam00307  75 KLGVPKVLI-EPEDLVEGDN--KSVLTYLASLFRR 106
LRR_8 pfam13855
Leucine rich repeat;
152-208 8.52e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.75  E-value: 8.52e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 966930836  152 LKVLIASNNKLVSLPEEI-GHLRHLMELDVSCNEIQTI-PSQIGNLEALRDLNVRRNHL 208
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAfKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
DUF874 pfam05917
Helicobacter pylori protein of unknown function (DUF874); This family consists of several ...
 427-590 2.31e-04

Helicobacter pylori protein of unknown function (DUF874); This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.


Pssm-ID: 283549 [Multi-domain]  Cd Length: 398  Bit Score: 44.46  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  427 REFQKTEDMRRYLHQNRVPVEpSSLLSLSASHNQLSHTDLELHRRReQLVERTRREAQLAALQYEEEKIRTKQIQRDAVL 506
Cdd:pfam05917 131 QEKKEAENAEDRANKNGIELE-QEKQKTNKSGIELANNQIKAEQEQ-QKTEQEKQKAEKEAIELEQEKQKTIKTQRDLIK 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  507 ---DFVK--QKASQSPQKQQPLLDGESLSGLN---QVGCAAPLPHSSAFTPLKSDDRPNTllSSPTTEtvHHSSAYAFPA 578
Cdd:pfam05917 209 eqkDFIKetEQNCQENHNQFFIEKGGIKAGIAievEAECKTPKPAKTNQTPIQPKHLPNS--KQPHSQ--RGSKAQEFIA 284

                         170
                  ....*....|..
gi 966930836  579 AIQRNQPQRPES 590
Cdd:pfam05917 285 YLQKELEFLPYS 296
SCP1 COG5199
Calponin [Cytoskeleton];
636-726 3.24e-03

Calponin [Cytoskeleton];


Pssm-ID: 227526 [Multi-domain]  Cd Length: 178  Bit Score: 39.13  E-value: 3.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 636 ELIDQLRKHIEYRL--KVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPkltmakcRRNVENFLEACRKIGV 713
Cdd:COG5199   13 KQQKEVTLWIETVLgeKFEPPGDLLSLLKDGVRLCRILNEASPLDIKYKESKMPFVQ-------MENISSFINGLKKLRV 85

                         90
                 ....*....|...
gi 966930836 714 PQDNLCSPSDILQ 726
Cdd:COG5199   86 PEYELFQTNDLFE 98
 
Name Accession Description Interval E-value
CH_LRCH1 cd21270
calponin homology (CH) domain found in leucine-rich repeat and calponin homology ...
 633-742 3.17e-61

calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 1; Leucine-rich repeat and calponin homology domain-containing protein 1 (LRCH1), also called calponin homology domain-containing protein 1, or neuronal protein 81 (NP81), acts as a negative regulator of GTPase CDC42 by sequestering CDC42-guanine exchange factor DOCK8. LRCH1 contains a single copy of the CH domain at the C-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409119  Cd Length: 112  Bit Score: 201.62  E-value: 3.17e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 633 EELELIDQLRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIG 712
Cdd:cd21270    1 EERELTEQLRENIETRLKVSLPEDLGAALMDGVVLCHLVNHVRPRSVASIHVPSPAVPKLSMAKCRRNVENFLEACRKIG 80

                         90       100       110
                 ....*....|....*....|....*....|.
gi 966930836 713 VPQDNLCSPSDILQLNL-SVKRTVETLLSLG 742
Cdd:cd21270   81 VPEADLCSPYDILQLNLrGIRKTVETLLALG 111
CH_LRCH cd21205
calponin homology (CH) domain found in the leucine-rich repeat and calponin homology ...
 636-740 8.22e-58

calponin homology (CH) domain found in the leucine-rich repeat and calponin homology domain-containing protein family; The leucine-rich repeat and calponin homology domain-containing protein (LRCH) family includes LRCH1-4. LRCH1, also called calponin homology domain-containing protein 1, or neuronal protein 81 (NP81), acts as a negative regulator of GTPase Cdc42 by sequestering Cdc42-guanine exchange factor DOCK8. LRCH2 may play a role in the organization of the cytoskeleton. LRCH3 is part of the DISP complex and may regulate the association of septins with actin and thereby regulate the actin cytoskeleton. LRCH4, also called leucine-rich repeat neuronal protein 4, or leucine-rich neuronal protein, acts as a novel Toll-like receptor (TLR) accessory protein that regulates the innate immune response. Members of this family contain a single copy of the CH domain at the C-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409054 [Multi-domain]  Cd Length: 107  Bit Score: 192.13  E-value: 8.22e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 636 ELIDQLRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQ 715
Cdd:cd21205    1 EQIEQLRKSIESRLKVTLPDDLGEALMDGVVLCHLANHVRPRSVPSIHVPSPAVPKLSMAKCRRNVENFLEACRKLGVPE 80

                         90       100
                 ....*....|....*....|....*..
gi 966930836 716 DNLCSPSDILQLN--LSVKRTVETLLS 740
Cdd:cd21205   81 ERLCSPGDILEEKglVRVAVTVQALLQ 107
CH_LRCH3 cd21272
calponin homology (CH) domain found in leucine-rich repeat and calponin homology ...
 636-741 1.35e-57

calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 3; Leucine-rich repeat and calponin homology domain-containing protein 3 (LRCH3) is part of the DISP (DOCK7-Induced Septin disPlacement) complex. It may regulate the association of septins with actin and thereby regulate the actin cytoskeleton. LRCH3 contains a single copy of the CH domain at the C-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409121  Cd Length: 109  Bit Score: 191.74  E-value: 1.35e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 636 ELIDQLRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIGVPQ 715
Cdd:cd21272    1 ELIEQLRKNIESRLKVSLPSDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRRIGVPQ 80

                         90       100
                 ....*....|....*....|....*...
gi 966930836 716 DNLCSPSDILQLN--LSVKRTVETLLSL 741
Cdd:cd21272   81 EQLCLPLHILEEKglSQVAVTVQALLEL 108
CH_LRCH2 cd21271
calponin homology (CH) domain found in leucine-rich repeat and calponin homology ...
 633-739 1.80e-50

calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 2; Leucine-rich repeat and calponin homology domain-containing protein 2 (LRCH2) may play a role in the organization of the cytoskeleton. It contains a single copy of the CH domain at the C-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409120  Cd Length: 111  Bit Score: 172.04  E-value: 1.80e-50
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 633 EELELIDQLRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIG 712
Cdd:cd21271    2 EELELIEQLRENIESRLKVILPEDLGAALMDGVVLCHLANHIRPRSVGSIHVPSPAVPKLSMAKCRRNVENFLDACRKLG 81

                         90       100
                 ....*....|....*....|....*....
gi 966930836 713 VPQDNLCSPSDILQLN--LSVKRTVETLL 739
Cdd:cd21271   82 VPEDKLCLPHHILEEKglVKVSVTVQALL 110
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
80-286 6.05e-43

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 161.25  E-value: 6.05e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  80 DLTDTTRADLSRNRLSEIPIEACHFVSLENLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLP-LKVLIAS 158
Cdd:COG4886  111 NLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTnLKELDLS 190

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 159 NNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPeELAELP-LIRLDFSCNKITTIPVCY 237
Cdd:COG4886  191 NNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQLTDLP-ELGNLTnLEELDLSNNQLTDLPPLA 269

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 966930836 238 rNLRHLQMITLDNNPLQSPPAQICIKGKVHIFKYLNIQACKIAPDLPDY 286
Cdd:COG4886  270 -NLTNLKTLDLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILL 317
CH_LRCH4 cd21273
calponin homology (CH) domain found in leucine-rich repeat and calponin homology ...
 633-739 9.11e-43

calponin homology (CH) domain found in leucine-rich repeat and calponin homology domain-containing protein 4; Leucine-rich repeat and calponin homology domain-containing protein 4 (LRCH4), also called leucine-rich repeat neuronal protein 4, or leucine-rich neuronal protein, acts as a novel Toll-like receptor (TLR) accessory protein that regulates the innate immune response. LRCH4 contains a single copy of the CH domain at the C-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409122  Cd Length: 109  Bit Score: 150.44  E-value: 9.11e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 633 EELELIDQLRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTMAKCRRNVENFLEACRKIG 712
Cdd:cd21273    1 DEKELRAQLRKTLESRLKVTLPEDLAEALSNGAVLCQLANQLRPRSVSIIHVPSPAVPKLSKAKCRKNVENFIEACRKMG 80

                         90       100
                 ....*....|....*....|....*...
gi 966930836 713 VPQDNLCSPSDILQLNLS-VKRTVETLL 739
Cdd:cd21273   81 VPEVDLCSPSDVLLQGPAaVLRTVLALL 108
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
107-285 1.64e-26

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 113.10  E-value: 1.64e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 107 LENLNLYQNCIRYIPEAILNLQALTFLNISRNQlstlpvHLCNLP-LKVLIASNNKLVSLPEEIGHLRHLMELDVSCNEI 185
Cdd:COG4886   75 LLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE------ELSNLTnLESLDLSGNQLTDLPEELANLTNLKELDLSNNQL 148

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 186 QTIPSQIGNLEALRDLNVRRNHLVHLPEELAELP-LIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQIcikG 264
Cdd:COG4886  149 TDLPEPLGNLTNLKSLDLSNNQLTDLPEELGNLTnLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQLTDLPEPL---A 225

                        170       180
                 ....*....|....*....|.
gi 966930836 265 KVHIFKYLNIQACKIApDLPD 285
Cdd:COG4886  226 NLTNLETLDLSNNQLT-DLPE 245
CH_SF cd00014
calponin homology (CH) domain superfamily; CH domains are actin filament (F-actin) binding ...
 638-742 7.85e-21

calponin homology (CH) domain superfamily; CH domains are actin filament (F-actin) binding motifs, which may be present as a single copy or in tandem repeats (which increase binding affinity). They either function as autonomous actin binding motifs or serve a regulatory function. CH domains are found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, as well as proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).


Pssm-ID: 409031 [Multi-domain]  Cd Length: 103  Bit Score: 87.78  E-value: 7.85e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 638 IDQLRKHIEYRLKVALP---CDLGAALTDGVVLCHLANHVRPRSVPSIHVPSpavpkLTMAKCRRNVENFLEACRKIGVP 714
Cdd:cd00014    1 EEELLKWINEVLGEELPvsiTDLFESLRDGVLLCKLINKLSPGSIPKINKKP-----KSPFKKRENINLFLNACKKLGLP 75

                         90       100
                 ....*....|....*....|....*...
gi 966930836 715 QDNLCSPSDILQLNlSVKRTVETLLSLG 742
Cdd:cd00014   76 ELDLFEPEDLYEKG-NLKKVLGTLWALA 102
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
78-285 8.52e-19

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 89.61  E-value: 8.52e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  78 NHDLTDTTRADLSRNRLSEIPIEACHFVSLENLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLP-LKVLI 156
Cdd:COG4886   23 TLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTnLTELD 102

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 157 ASNNklvslpEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPEELAELP-LIRLDFSCNKITTIPV 235
Cdd:COG4886  103 LSGN------EELSNLTNLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPLGNLTnLKSLDLSNNQLTDLPE 176

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 966930836 236 CYRNLRHLQMITLDNNPLQSPPAQIcikGKVHIFKYLNIQACKIApDLPD 285
Cdd:COG4886  177 ELGNLTNLKELDLSNNQITDLPEPL---GNLTNLEELDLSGNQLT-DLPE 222
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
81-234 8.00e-14

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 75.50  E-value: 8.00e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  81 LTDTTR-ADLSRNRLSEIPIeacHFVS-LENLNLYQNCIRYIPEAILnlQALTFLNISRNQLSTLPVHL----------- 147
Cdd:PRK15370 239 LPDTIQeMELSINRITELPE---RLPSaLQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLpsgithlnvqs 313

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 148 -------CNLP--LKVLIASNNKLVSLPEEIGhlRHLMELDVSCNEIQTIPSQIGnlEALRDLNVRRNHLVHLPEELAEl 218
Cdd:PRK15370 314 nsltalpETLPpgLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPENLPA- 388

                        170
                 ....*....|....*.
gi 966930836 219 PLIRLDFSCNKITTIP 234
Cdd:PRK15370 389 ALQIMQASRNNLVRLP 404
CH smart00033
Calponin homology domain; Actin binding domains present in duplicate at the N-termini of ...
 639-741 4.17e-13

Calponin homology domain; Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.


Pssm-ID: 214479 [Multi-domain]  Cd Length: 101  Bit Score: 65.80  E-value: 4.17e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836   639 DQLRKHIEYRLKVALPC---DLGAALTDGVVLCHLANHVRPRSVPSIHVPspavPKLTMAKCRRNVENFLEACRKIGVPQ 715
Cdd:smart00033   1 KTLLRWVNSLLAEYDKPpvtNFSSDLKDGVALCALLNSLSPGLVDKKKVA----ASLSRFKKIENINLALSFAEKLGGKV 76

                           90       100
                   ....*....|....*....|....*.
gi 966930836   716 DNLcSPSDILQLNLSVKRTVETLLSL 741
Cdd:smart00033  77 VLF-EPEDLVEGPKLILGVIWTLISL 101
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 89-212 4.47e-12

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 66.35  E-value: 4.47e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  89 LSRNRLSEI-PIEAChfVSLENLNLYQNCIRYIpEAILNLQALTFLNISRNQLStLPVHLCNLP---------LKVLIAS 158
Cdd:cd21340   53 LQNNQIEKIeNLENL--VNLKKLYLGGNRISVV-EGLENLTNLEELHIENQRLP-PGEKLTFDPrslaalsnsLRVLNIS 128

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 966930836 159 NNKLVSLpEEIGHLRHLMELDVSCNEIQTIPSQ---IGNLEALRDLNVRRNHLVHLP 212
Cdd:cd21340  129 GNNIDSL-EPLAPLRNLEQLDASNNQISDLEELldlLSSWPSLRELDLTGNPVCKKP 184
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 88-253 1.40e-11

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 68.34  E-value: 1.40e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  88 DLSRNRLS-EIPIEACHFVSLENLNLYQNCIR-YIPEAILNLQALTFLNISRNQLS-TLPVHLCNL-PLK-VLIASNNKL 162
Cdd:PLN00113 146 DLSNNMLSgEIPNDIGSFSSLKVLDLGGNVLVgKIPNSLTNLTSLEFLTLASNQLVgQIPRELGQMkSLKwIYLGYNNLS 225

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 163 VSLPEEIGHLRHLMELD-VSCNEIQTIPSQIGNLEALRDLNVRRNHLV-HLPEELAELP-LIRLDFSCNKIT-TIPVCYR 238
Cdd:PLN00113 226 GEIPYEIGGLTSLNHLDlVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSgPIPPSIFSLQkLISLDLSDNSLSgEIPELVI 305

                        170
                 ....*....|....*
gi 966930836 239 NLRHLQMITLDNNPL 253
Cdd:PLN00113 306 QLQNLEILHLFSNNF 320
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 89-257 5.59e-11

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 62.88  E-value: 5.59e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  89 LSRNRLSEIP-IEACHfvSLENLNLYQNCIRYIpEAILNLQALTFLNISRNQLSTLPvHLCNLP-LKVLIASNNKLVSLp 166
Cdd:cd21340    9 LNDKNITKIDnLSLCK--NLKVLYLYDNKITKI-ENLEFLTNLTHLYLQNNQIEKIE-NLENLVnLKKLYLGGNRISVV- 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 167 EEIGHLRHLMELDVSCneiQTIP----------SQIGNLEALRDLNVRRNHLVHLpEELAELP-LIRLDFSCNKITTI-P 234
Cdd:cd21340   84 EGLENLTNLEELHIEN---QRLPpgekltfdprSLAALSNSLRVLNISGNNIDSL-EPLAPLRnLEQLDASNNQISDLeE 159

                        170       180
                 ....*....|....*....|....*
gi 966930836 235 VC--YRNLRHLQMITLDNNPLQSPP 257
Cdd:cd21340  160 LLdlLSSWPSLRELDLTGNPVCKKP 184
CH_VAV cd21201
calponin homology (CH) domain found in VAV proteins; VAV proteins function both as cytoplasmic ...
 652-738 9.78e-11

calponin homology (CH) domain found in VAV proteins; VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and as scaffold proteins, and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. This model corresponds to the CH domain, an actin-binding domain which is present as a single copy in VAV proteins.


Pssm-ID: 409050  Cd Length: 117  Bit Score: 59.58  E-value: 9.78e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 652 ALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVpspaVPKLTMAK--CRRNVENFLEACR-KIGVPQDNLCSPSDILQLN 728
Cdd:cd21201   27 ATVFDLAQALRDGVLLCQLLNRLSPGSVDDREI----NLRPQMSQflCLKNIRTFLQACRtVFGLRSADLFEPEDLYDVT 102

                         90
                 ....*....|
gi 966930836 729 lSVKRTVETL 738
Cdd:cd21201  103 -NFGKVIRTL 111
CH_LMO7-like cd21208
calponin homology (CH) domain found in LIM domain only protein 7 and similar proteins; This ...
 639-724 4.20e-10

calponin homology (CH) domain found in LIM domain only protein 7 and similar proteins; This family includes LIM domain only protein 7 (LMO-7) and LIM and calponin homology domains-containing protein 1 (LIMCH1), and similar proteins. LMO-7, also called F-box only protein 20, or LOMP, is a transcription regulator for expression of many Emery-Dreifuss muscular dystrophy (EDMD)-relevant genes. It binds to alpha-actinin and AF6/afadin at adherens junctions for epithelial cell-cell adhesion. LIMCH1 acts as an actin stress fiber-associated protein that activates the non-muscle myosin IIa complex by promoting the phosphorylation of its regulatory subunit MRLC/MYL9. It positively regulates actin stress fiber assembly and stabilizes focal adhesions, and therefore negatively regulates cell spreading and cell migration. Members of this family contain a single copy of the CH domain at the N-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409057 [Multi-domain]  Cd Length: 119  Bit Score: 57.73  E-value: 4.20e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 639 DQLRKHIEYRLKVALPCDL-GAALTDGVVLCHLANHVRPRSVPSI-HVPSPAVpkltmakCRRNVENFLEACRKIGVPQD 716
Cdd:cd21208    3 KEARTWIEAVTGKKFPSDDfRESLEDGILLCELINAIKPGSIKKInRLPTPIA-------GLDNLNLFLKACEDLGLKDS 75


                 ....*...
gi 966930836 717 NLCSPSDI 724
Cdd:cd21208   76 QLFDPTDL 83
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 81-251 8.20e-10

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 62.56  E-value: 8.20e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  81 LTDTTRADLSRNRLS-EIPIEACHFVSLENLNLYQNCIR-YIPEAILNLQALTFLNISRNQLS----------------- 141
Cdd:PLN00113 235 LTSLNHLDLVYNNLTgPIPSSLGNLKNLQYLFLYQNKLSgPIPPSIFSLQKLISLDLSDNSLSgeipelviqlqnleilh 314

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 142 --------TLPVHLCNLP-LKVLIASNNKLV-SLPEEIGHLRHLMELDVSCNEIQ------------------------- 186
Cdd:PLN00113 315 lfsnnftgKIPVALTSLPrLQVLQLWSNKFSgEIPKNLGKHNNLTVLDLSTNNLTgeipeglcssgnlfklilfsnsleg 394

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966930836 187 TIPSQIGNLEALRDLNVRRNHLV-HLPEELAELPLIR-LDFSCNKIT-TIPVCYRNLRHLQMITLDNN 251
Cdd:PLN00113 395 EIPKSLGACRSLRRVRLQDNSFSgELPSEFTKLPLVYfLDISNNNLQgRINSRKWDMPSLQMLSLARN 462
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
119-260 2.65e-09

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 60.87  E-value: 2.65e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 119 YIPEAIlnlqalTFLNISRNQLSTLPVHLcNLPLKVLIASNNKLVSLPEEIGHLRHLMELD------------------- 179
Cdd:PRK15370 196 CIPEQI------TTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLPDTIQEMELSinritelperlpsalqsld 268

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 180 VSCNEIQTIPSQIGnlEALRDLNVRRNHLVHLPEELAElPLIRLDFSCNKITTIPVCYRnlRHLQMITLDNNPLQSPPAQ 259
Cdd:PRK15370 269 LFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPS-GITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPAS 343


                 .
gi 966930836 260 I 260
Cdd:PRK15370 344 L 344
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
61-252 3.40e-09

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 59.56  E-value: 3.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  61 VLSLSGRKLREFPRGAANhdLTDTTRADLSRNRLSEIPiEACHFVSLENLNLYQNCIRYIPEaILNLQALTFLNISRNQL 140
Cdd:COG4886  209 ELDLSGNQLTDLPEPLAN--LTNLETLDLSNNQLTDLP-ELGNLTNLEELDLSNNQLTDLPP-LANLTNLKTLDLSNNQL 284

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 141 STLPV-HLCNLPLKVLIASNNKLVSLPEEIGHLRHLMELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVHLPEELAELP 219
Cdd:COG4886  285 TDLKLkELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSLLLT 364

                        170       180       190
                 ....*....|....*....|....*....|...
gi 966930836 220 LIRLDFSCNKITTIPVCYRNLRHLQMITLDNNP 252
Cdd:COG4886  365 LLLTLGLLGLLEATLLTLALLLLTLLLLLLTTT 397
CH_dMP20-like cd21207
calponin homology (CH) domain found in Drosophila melanogaster muscle-specific protein 20 ...
 656-726 3.78e-09

calponin homology (CH) domain found in Drosophila melanogaster muscle-specific protein 20 (dMP20) and similar domains; This subfamily contains Drosophila melanogaster muscle-specific protein 20 (dMP20), Echinococcus granulosus myophilin, Dictyostelium discoideum Rac guanine nucleotide exchange factor B (also called Trix), and similar proteins. dMP20 is present only in the synchronous muscles of D. melanogaster. It may be involved in the system linking the nerve impulse with the contraction or the relaxation process. Trix is involved in the regulation of the late steps of the endocytic pathway. dMP20 contains a single copy of the CH domain, while Trix (triple CH-domain array exchange factor) contains three, two type 3 CH domains which are included in this model, and one type 1 CH domain that is not included in this subfamily, but is part of the superfamily. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409056 [Multi-domain]  Cd Length: 107  Bit Score: 54.62  E-value: 3.78e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966930836 656 DLGAALTDGVVLCHLANHVRPRSVPSIHvpspavpklTMA---KCRRNVENFLEACRKIGVPqdnlcsPSDILQ 726
Cdd:cd21207   27 DYEDVLKDGVILCKLINILKPGSVKKIN---------TSKmafKLMENIENFLTACKGYGVP------KTDLFQ 85
CH pfam00307
Calponin homology (CH) domain; The CH domain is found in both cytoskeletal proteins and signal ...
 635-744 4.95e-09

Calponin homology (CH) domain; The CH domain is found in both cytoskeletal proteins and signal transduction proteins. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity. Most member proteins have from two to four copies of the CH domain, however some proteins such as calponin have only a single copy.


Pssm-ID: 425596 [Multi-domain]  Cd Length: 109  Bit Score: 54.60  E-value: 4.95e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  635 LELIDQLRKHIEYRLKVALPC----DLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVpkltmaKCRRNVENFLE-ACR 709
Cdd:pfam00307   1 LELEKELLRWINSHLAEYGPGvrvtNFTTDLRDGLALCALLNKLAPGLVDKKKLNKSEF------DKLENINLALDvAEK 74

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 966930836  710 KIGVPQDNLcSPSDILQLNLsvKRTVETLLSLGAH 744
Cdd:pfam00307  75 KLGVPKVLI-EPEDLVEGDN--KSVLTYLASLFRR 106
CH_AtKIN14-like cd21203
calponin homology (CH) domain found in Arabidopsis thaliana Kinesin-like KIN-14 protein family; ...
 656-741 1.03e-08

calponin homology (CH) domain found in Arabidopsis thaliana Kinesin-like KIN-14 protein family; Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. This family includes a group of kinesin-like proteins belonging to KIN-14 protein family. They all contain a single copy of the CH domain at the N-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409052 [Multi-domain]  Cd Length: 112  Bit Score: 53.57  E-value: 1.03e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 656 DLGAALTDGVVLCHLANHVRPRSVPSI--HVPSPAVPKLTMAKCRRNVENFLEACRKIGVPqdnLCSPSDILQLNL-SVK 732
Cdd:cd21203   25 EFRLCLRDGVVLCKLLNKLQPGAVPKVveSPDDPDGAAGSAFQYFENVRNFLVAIEEMGLP---TFEASDLEQGGGgSRP 101


                 ....*....
gi 966930836 733 RTVETLLSL 741
Cdd:cd21203  102 RVVDCILAL 110
CH_SCP1-like cd21210
calponin homology (CH) domain found in Saccharomyces cerevisiae transgelin (SCP1) and similar ...
 654-743 1.45e-08

calponin homology (CH) domain found in Saccharomyces cerevisiae transgelin (SCP1) and similar proteins; The family includes transgelins from Saccharomyces cerevisiae and Schizosaccharomyces pombe, which are also called SCP1 and STG1, respectively. Transgelin, also called calponin homolog 1, has actin-binding and actin-bundling activity. It stabilizes actin filaments against disassembly. Transgelin contains a single copy of the CH domain. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409059 [Multi-domain]  Cd Length: 101  Bit Score: 52.75  E-value: 1.45e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 654 PCDLGAALTDGVVLCHLANHVRPRSVPSIHvpSPAVPKLTMakcrRNVENFLEACRKIGVPQDNLCSPSDILQlNLSVKR 733
Cdd:cd21210   19 QGDLLDALKDGVVLCKLANRILPADIRKYK--ESKMPFVQM----ENISAFLNAARKLGVPENDLFQTVDLFE-RKNPAQ 91

                         90
                 ....*....|
gi 966930836 734 TVETLLSLGA 743
Cdd:cd21210   92 VLQCLHALSR 101
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 80-208 3.50e-08

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 57.17  E-value: 3.50e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  80 DLTDTTRADLSRNRLS-EIPiEACHFVSLENLNLYQNCIR-YIPEAILNLQALTFLNISRNQLS-TLPVHLCNLP-LKVL 155
Cdd:PLN00113 450 DMPSLQMLSLARNKFFgGLP-DSFGSKRLENLDLSRNQFSgAVPRKLGSLSELMQLKLSENKLSgEIPDELSSCKkLVSL 528

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 966930836 156 IASNNKLV-SLPEEIGHLRHLMELDVSCNEIQ-TIPSQIGNLEALRDLNVRRNHL 208
Cdd:PLN00113 529 DLSHNQLSgQIPASFSEMPVLSQLDLSQNQLSgEIPKNLGNVESLVQVNISHNHL 583
CH_PIX cd21202
calponin homology (CH) domain found in the Pak Interactive eXchange factor family; Pak ...
 657-738 2.34e-07

calponin homology (CH) domain found in the Pak Interactive eXchange factor family; Pak Interactive eXchange factor (PIX) proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX family, alpha-PIX and beta-PIX. Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6), is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7), plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. Both alpha-PIX and beta-PIX contain a single copy of the CH domain at the N-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409051 [Multi-domain]  Cd Length: 114  Bit Score: 49.84  E-value: 2.34e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 657 LGAALTDGVVLCHLANHVRPRSVPSIHvPSPavpkLTMAKCRRNVENFLEACRKIGVPQDNLCSPSDILQL--NLSVKRT 734
Cdd:cd21202   30 LSESLKNGVVLCRLVNRLKPGTVEKIY-DEP----TTEEECLYNFESFLKACQELGILAEEIFDPNDLYSGgnFQKVLST 104


                 ....
gi 966930836 735 VETL 738
Cdd:cd21202  105 LERL 108
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
107-285 6.00e-07

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 52.63  E-value: 6.00e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 107 LENLNLYQNCIRYIPEAILNLQALTFLNISRNQLSTLPVHLCNLPLKVLIASNNKLVSLPEEIGHLRHLMELDV-----S 181
Cdd:COG4886    2 LLLLLSLTLKLLLLLLLELLTTLILLLLLLLLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLllsllL 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 182 CNEIQTIPSQIGNLEALRDLNVRRNhlvhlpEELAELP-LIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQI 260
Cdd:COG4886   82 LSLLLLGLTDLGDLTNLTELDLSGN------EELSNLTnLESLDLSGNQLTDLPEELANLTNLKELDLSNNQLTDLPEPL 155

                        170       180
                 ....*....|....*....|....*
gi 966930836 261 cikGKVHIFKYLNIQACKIApDLPD 285
Cdd:COG4886  156 ---GNLTNLKSLDLSNNQLT-DLPE 176
LRR_8 pfam13855
Leucine rich repeat;
152-208 8.52e-07

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 46.75  E-value: 8.52e-07
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 966930836  152 LKVLIASNNKLVSLPEEI-GHLRHLMELDVSCNEIQTI-PSQIGNLEALRDLNVRRNHL 208
Cdd:pfam13855   3 LRSLDLSNNRLTSLDDGAfKGLSNLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGNRL 61
CH_CNN cd21211
calponin homology (CH) domain found in the calponin family; Calponin is an actin ...
 630-743 9.95e-07

calponin homology (CH) domain found in the calponin family; Calponin is an actin filament-associated regulatory protein expressed in smooth muscle and many types of non-muscle cells. There are three calponin isoforms, calponin-1, -2, -3. All of them are actin-binding proteins with functions in inhibiting actin-activated myosin ATPase and stabilizing the actin cytoskeleton. Calponin-1 is specifically expressed in smooth muscle cells and plays a role in fine-tuning smooth muscle contractility. Calponin-2 is expressed in both smooth muscle and non-muscle cells and regulates multiple actin cytoskeleton-based functions. Calponin-3 is expressed in the brain and participates in actin cytoskeleton-based activities in embryonic development and myogenesis. Members of this family contain a single copy of the CH domain. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409060 [Multi-domain]  Cd Length: 108  Bit Score: 48.07  E-value: 9.95e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 630 QREEELelidqlRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLtmakcrRNVENFLEACR 709
Cdd:cd21211    3 QKEAEL------RTWIEGVTGLSIGPNFQKGLKDGIILCELINKLQPGSVKKINESMQNWHQL------ENIGNFIKAIV 70

                         90       100       110
                 ....*....|....*....|....*....|....
gi 966930836 710 KIGVPQDNLCSPSDILQlNLSVKRTVETLLSLGA 743
Cdd:cd21211   71 SYGMKPHDIFEANDLFE-NGNMTQVQVTLLALAG 103
LRR_8 pfam13855
Leucine rich repeat;
173-253 3.11e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 45.21  E-value: 3.11e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  173 RHLMELDVSCNEIQTIPSqignlEALRDLNvrrnhlvhlpeelaelPLIRLDFSCNKITTI-PVCYRNLRHLQMITLDNN 251
Cdd:pfam13855   1 PNLRSLDLSNNRLTSLDD-----GAFKGLS----------------NLKVLDLSNNLLTTLsPGAFSGLPSLRYLDLSGN 59


                  ..
gi 966930836  252 PL 253
Cdd:pfam13855  60 RL 61
PRK15387 PRK15387
type III secretion system effector E3 ubiquitin transferase SspH2;
81-247 4.09e-06

type III secretion system effector E3 ubiquitin transferase SspH2;


Pssm-ID: 185285 [Multi-domain]  Cd Length: 788  Bit Score: 50.55  E-value: 4.09e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  81 LTDTTRADLSRNRLSEIPIEAChfvsleNLNLYQNCIRYIPEAILNLQALTflnISRNQLSTLPV-------------HL 147
Cdd:PRK15387 304 LQELSVSDNQLASLPALPSELC------KLWAYNNQLTSLPTLPSGLQELS---VSDNQLASLPTlpselyklwaynnRL 374

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 148 CNLP-----LKVLIASNNKLVSLPEEIGHLRHLMeldVSCNEIQTIPSQIgnlEALRDLNVRRNHLVHLPEELAELplir 222
Cdd:PRK15387 375 TSLPalpsgLKELIVSGNRLTSLPVLPSELKELM---VSGNRLTSLPMLP---SGLLSLSVYRNQLTRLPESLIHL---- 444

                        170       180       190
                 ....*....|....*....|....*....|
gi 966930836 223 ldfscNKITTI-----PVCYRNLRHLQMIT 247
Cdd:PRK15387 445 -----SSETTVnlegnPLSERTLQALREIT 469
PRK15370 PRK15370
type III secretion system effector E3 ubiquitin transferase SlrP;
106-173 5.79e-06

type III secretion system effector E3 ubiquitin transferase SlrP;


Pssm-ID: 185268 [Multi-domain]  Cd Length: 754  Bit Score: 50.08  E-value: 5.79e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 106 SLENLNLYQNCIRYIPEAILnlQALTFLNISRNQLSTLPVhlcNLP--LKVLIASNNKLVSLPEEIGHLR 173
Cdd:PRK15370 347 ELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNLPE---NLPaaLQIMQASRNNLVRLPESLPHFR 411
CH_GAS2-like cd21204
calponin homology (CH) domain found in the growth arrest-specific protein 2 family; The growth ...
 660-715 6.25e-06

calponin homology (CH) domain found in the growth arrest-specific protein 2 family; The growth arrest-specific protein 2 (GAS-2) family includes GAS-2, and GAS-2 like proteins, GAS2L1-3. GAS-2 may play a role in apoptosis by acting as a cell death substrate for caspases. GAS2L1 (also called GAS2-related protein on chromosome 22 or growth arrest-specific protein 2-like 1) and GAS2L2 (also called GAS2-related protein on chromosome 17 or growth arrest-specific protein 2-like 2) may be involved in the cross-linking of microtubules and microfilaments. GAS2L3, also called GAS2-like protein 3, is a cytoskeletal linker protein that may promote and stabilize the formation of the actin and microtubule network. Members of this family contain a single copy of the CH domain at the N-terminal region. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409053  Cd Length: 131  Bit Score: 46.11  E-value: 6.25e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966930836 660 ALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTM-AKC-----------RRNVENFLEACRKIGVPQ 715
Cdd:cd21204   31 ELRNGVVLCQLAQKIQEAAEKAREAGKKNGPPPSYkLKCnenakpgsffaRDNVANFLRWCRKLGVDE 98
CH_PLS_FIM_rpt1 cd21217
first calponin homology (CH) domain found in the plastin/fimbrin family; This family includes ...
 656-728 2.12e-05

first calponin homology (CH) domain found in the plastin/fimbrin family; This family includes plastin and fimbrin. Plastin has three isoforms, plastin-1, -2, and -3, which are all actin-bundling proteins. Plastin-1, also called intestine-specific plastin, or I-plastin, is an actin-bundling protein in the absence of calcium. Plastin-2, also called L-plastin, LC64P, or lymphocyte cytosolic protein 1 (LCP-1), plays a role in the activation of T-cells in response to costimulation through TCR/CD3 and CD2 or CD28. It modulates the cell surface expression of IL2RA/CD25 and CD69. Plastin-3, also called T-plastin, is found in intestinal microvilli, hair cell stereocilia, and fibroblast filopodia. It may play a role in the regulation of bone development. Fimbrin has been found in plants and fungi. Arabidopsis thaliana fimbrin (AtFIM) includes fimbrin-1, -2, -3, -4, and -5; they cross-link actin filaments (F-actin) in a calcium independent manner. They stabilize and prevent F-actin depolymerization mediated by profilin. They act as key regulators of actin cytoarchitecture, probably involved in cell cycle, cell division, cell elongation and cytoplasmic tractus. AtFIM5 is an actin bundling factor that is required for pollen germination and pollen tube growth. Fungal fimbrin binds to actin, and functionally associates with actin structures involved in the development and maintenance of cell polarity. Members of this family contain four copies of the CH domain. This model corresponds to the first CH domain. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409066 [Multi-domain]  Cd Length: 114  Bit Score: 44.10  E-value: 2.12e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966930836 656 DLGAALTDGVVLCHLANHVRPRSVP--SIHVPSPavpkLTMAKCRRNVENFLEACRKIGVPQDNLcSPSDILQLN 728
Cdd:cd21217   32 DLFEALRDGVLLCKLINKIVPGTIDerKLNKKKP----KNIFEATENLNLALNAAKKIGCKVVNI-GPQDILDGN 101
CH_TAGLN2 cd21280
calponin homology (CH) domain found in transgelin-2; Transgelin-2, also called epididymis ...
 661-751 2.95e-05

calponin homology (CH) domain found in transgelin-2; Transgelin-2, also called epididymis tissue protein Li 7e, or SM22-alpha homolog, acts as an actin-binding protein that induces actin gelation and regulates the actin cytoskeleton. It may participate in the development and progression of multiple cancers. It contains a single copy of the CH domain. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409129 [Multi-domain]  Cd Length: 137  Bit Score: 44.48  E-value: 2.95e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 661 LTDGVVLCHLANHVRPRSvpsiHVPSPAVPKLTMA-KCRRNVENFLEACRKIGVPqdnlcsPSDILQL-------NL-SV 731
Cdd:cd21280   39 LKDGTVLCHLINSLYPKG----QAPVKKIQASTMAfKQMEQISQFLQAAERYGIN------TTDIFQTvdlwegkNMaSV 108

                         90       100
                 ....*....|....*....|
gi 966930836 732 KRTVETLLSLGAHSEESSFV 751
Cdd:cd21280  109 QRTLMNLGGLAVTRDDGLFV 128
CH_VAV1 cd21262
calponin homology (CH) domain found in VAV1 protein; VAV1 is expressed predominantly in the ...
 655-741 2.99e-05

calponin homology (CH) domain found in VAV1 protein; VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. This model corresponds to the CH domain, an actin-binding domain which is present as a single copy in VAV1 protein.


Pssm-ID: 409111  Cd Length: 120  Bit Score: 44.16  E-value: 2.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 655 CDLGAALTDGVVLCHLANHVRPRSVPSIHVpsPAVPKLTMAKCRRNVENFLEAC-RKIGVPQDNLCSPSDILQLNlSVKR 733
Cdd:cd21262   30 CDLAQALRDGVLLCQLLNNLLPHAVNLREI--NLRPQMSQFLCLKNIRTFLSTCcEKFGLRKSELFEAFDLFDVR-DFGK 106


                 ....*...
gi 966930836 734 TVETLLSL 741
Cdd:cd21262  107 VIDTLSIL 114
CH_CNN2 cd21283
calponin homology (CH) domain found in calponin-2; Calponin-2 (CNN2), also called neutral ...
 630-741 3.57e-05

calponin homology (CH) domain found in calponin-2; Calponin-2 (CNN2), also called neutral calponin, or smooth muscle calponin H2, is an actin cytoskeleton-associated regulatory protein that inhibits the activity of myosin-ATPase and cytoskeleton dynamics. It contains a single copy of the CH domain. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409132 [Multi-domain]  Cd Length: 109  Bit Score: 43.38  E-value: 3.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 630 QREEELelidqlRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLtmakcrRNVENFLEACR 709
Cdd:cd21283    3 QKEAEL------RTWIEGLTGRSIGPDFQKGLKDGVILCELMNKLQPGSVPKINRSMQNWHQL------ENLSNFIKAMV 70

                         90       100       110
                 ....*....|....*....|....*....|..
gi 966930836 710 KIGVPQDNLCSPSDILQlNLSVKRTVETLLSL 741
Cdd:cd21283   71 SYGMKPVDLFEANDLFE-SGNMTQVQVSLLAL 101
CH_CNN1 cd21282
calponin homology (CH) domain found in calponin-1 and similar proteins; Calponin-1 (CNN1), ...
 630-728 6.13e-05

calponin homology (CH) domain found in calponin-1 and similar proteins; Calponin-1 (CNN1), also called basic calponin, or smooth muscle calponin H1, is a thin filament-associated protein that is implicated in the regulation and modulation of smooth muscle contraction. It is capable of binding to actin, calmodulin, troponin C, and tropomyosin. Calponin-1 contains a single copy of the CH domain. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409131 [Multi-domain]  Cd Length: 108  Bit Score: 42.94  E-value: 6.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 630 QREEELelidqlRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLtmakcrRNVENFLEACR 709
Cdd:cd21282    3 QTEEEL------RVWIEGVTGRRIGDNFMDGLKDGVILCELINKLQPGSVRKINESTQNWHKL------ENIGNFIKAIM 70

                         90
                 ....*....|....*....
gi 966930836 710 KIGVpqdnlcSPSDILQLN 728
Cdd:cd21282   71 HYGV------KPHDIFEAN 83
CH_LMO7 cd21277
calponin homology (CH) domain found in LIM domain only protein 7; LIM domain only protein 7 ...
 656-736 6.92e-05

calponin homology (CH) domain found in LIM domain only protein 7; LIM domain only protein 7 (LMO-7), also called F-box only protein 20, or LOMP, is a transcription regulator for expression of many Emery-Dreifuss muscular dystrophy (EDMD)-relevant genes. It binds to alpha-actinin and AF6/afadin at adherens junctions for epithelial cell-cell adhesion. It contains a single copy of the CH domain at the N-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409126 [Multi-domain]  Cd Length: 116  Bit Score: 42.90  E-value: 6.92e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 656 DLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLTmakcrrNVENFLEACRKIGVPQDNLCSPSDiLQlNLSVKRTV 735
Cdd:cd21277   21 DFRSALENGVLLCDLINKIKPGIIKKINRLSTPIAGLD------NINVFLKACEKLGLKEAQLFHPGD-LQ-DLSTRVTV 92


                 .
gi 966930836 736 E 736
Cdd:cd21277   93 K 93
CH_CNN3 cd21284
calponin homology (CH) domain found in calponin-3; Calponin-3 (CNN3), also called acidic ...
 630-741 1.52e-04

calponin homology (CH) domain found in calponin-3; Calponin-3 (CNN3), also called acidic isoform calponin, is an F-actin-binding protein that is expressed in the brain and has been shown to control dendritic spine morphology, density, and plasticity by regulating actin cytoskeletal reorganization and dynamics. It contains a single copy of the CH domain. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409133 [Multi-domain]  Cd Length: 111  Bit Score: 41.81  E-value: 1.52e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 630 QREEELelidqlRKHIEYRLKVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPKLtmakcrRNVENFLEACR 709
Cdd:cd21284    5 QKEEEL------RNWIEEVTGMSIGENFQKGLKDGVILCELINKLQPGSIRKINESKLNWHQL------ENIGNFIKAIQ 72

                         90       100       110
                 ....*....|....*....|....*....|..
gi 966930836 710 KIGVPQDNLCSPSDILQlNLSVKRTVETLLSL 741
Cdd:cd21284   73 AYGMKPHDIFEANDLFE-NGNMTQVQTTLLAL 103
CH_VAV3 cd21264
calponin homology (CH) domain found in VAV3 protein and similar proteins; VAV3 is ubiquitously ...
 656-741 2.07e-04

calponin homology (CH) domain found in VAV3 protein and similar proteins; VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. Its function has been implicated in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The model corresponds to CH domain, an actin-binding domain which is present as a single copy in VAV3 protein.


Pssm-ID: 409113  Cd Length: 117  Bit Score: 41.49  E-value: 2.07e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 656 DLGAALTDGVVLCHLANHVRPRSV--PSIHVPspavPKLTMAKCRRNVENFLEA-CRKIGVPQDNLCSPSDILQLNlSVK 732
Cdd:cd21264   31 DLAQTLRDGVLLCQLLNNLRPHSInlKEINLR----PQMSQFLCLKNIRTFLSAcCETFGMRKSELFEAFDLFDVR-DFG 105


                 ....*....
gi 966930836 733 RTVETLLSL 741
Cdd:cd21264  106 KVIETLSKL 114
DUF874 pfam05917
Helicobacter pylori protein of unknown function (DUF874); This family consists of several ...
 427-590 2.31e-04

Helicobacter pylori protein of unknown function (DUF874); This family consists of several hypothetical proteins specific to Helicobacter pylori. The function of this family is unknown.


Pssm-ID: 283549 [Multi-domain]  Cd Length: 398  Bit Score: 44.46  E-value: 2.31e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  427 REFQKTEDMRRYLHQNRVPVEpSSLLSLSASHNQLSHTDLELHRRReQLVERTRREAQLAALQYEEEKIRTKQIQRDAVL 506
Cdd:pfam05917 131 QEKKEAENAEDRANKNGIELE-QEKQKTNKSGIELANNQIKAEQEQ-QKTEQEKQKAEKEAIELEQEKQKTIKTQRDLIK 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  507 ---DFVK--QKASQSPQKQQPLLDGESLSGLN---QVGCAAPLPHSSAFTPLKSDDRPNTllSSPTTEtvHHSSAYAFPA 578
Cdd:pfam05917 209 eqkDFIKetEQNCQENHNQFFIEKGGIKAGIAievEAECKTPKPAKTNQTPIQPKHLPNS--KQPHSQ--RGSKAQEFIA 284

                         170
                  ....*....|..
gi 966930836  579 AIQRNQPQRPES 590
Cdd:pfam05917 285 YLQKELEFLPYS 296
CH_betaPIX cd21266
calponin homology (CH) domain found in beta-Pak Interactive eXchange factor; Beta-Pak ...
 657-708 6.09e-04

calponin homology (CH) domain found in beta-Pak Interactive eXchange factor; Beta-Pak Interactive eXchange factor (beta-PIX), also called PAK-interacting exchange factor beta, Rho guanine nucleotide exchange factor 7 (ARHGEF7), p85, or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. Beta-PIX contains a single copy of the CH domain at its N-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409115  Cd Length: 112  Bit Score: 40.29  E-value: 6.09e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 966930836 657 LGAALTDGVVLCHLANHVRPRSVPSIHvPSPAvpklTMAKCRRNVENFLEAC 708
Cdd:cd21266   29 LQASLKDGVVLCRLLERLLPGSIDKVY-PEPR----TESECLSNIREFLRGC 75
CH_alphaPIX cd21265
calponin homology (CH) domain found in alpha-Pak Interactive eXchange factor; Alpha-Pak ...
 657-748 6.80e-04

calponin homology (CH) domain found in alpha-Pak Interactive eXchange factor; Alpha-Pak Interactive eXchange factor (alpha-PIX), also called PAK-interacting exchange factor alpha, Rho guanine nucleotide exchange factor 6 (ARHGEF6), Rac/Cdc42 guanine nucleotide exchange factor 6, or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Alpha-PIX contains a single copy of the CH domain at its N-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409114  Cd Length: 117  Bit Score: 40.19  E-value: 6.80e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 657 LGAALTDGVVLCHLANHVRPRSVPSiHVPSPAvpklTMAKCRRNVENFLEACRKIGVpqdNLCSPSDILQ-LNLSvkRTV 735
Cdd:cd21265   31 LKSSLKDGVVLCKLIERLLPGSVEK-YCLEPK----TEADCIGNIKEFLKGCAALKV---ETFEPDDLYTgENFS--KVL 100

                         90
                 ....*....|...
gi 966930836 736 ETLLSLGAHSEES 748
Cdd:cd21265  101 STLLAVNKATEDR 113
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 120-260 1.19e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 42.53  E-value: 1.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 120 IPEAILNLQALTFLNISRNQLS-TLPVHLCNL--PLKVLIASNNKLV-SLPEeiGHLRHLMELDVSCNEIQ-TIPSQIGN 194
Cdd:PLN00113  85 ISSAIFRLPYIQTINLSNNQLSgPIPDDIFTTssSLRYLNLSNNNFTgSIPR--GSIPNLETLDLSNNMLSgEIPNDIGS 162

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 195 LEALRDLNVRRNHLV-HLPEELAELPLIR-LDFSCNKIT-TIPVCYRNLRHLQMITLDNNPLQSP-PAQI 260
Cdd:PLN00113 163 FSSLKVLDLGGNVLVgKIPNSLTNLTSLEfLTLASNQLVgQIPRELGQMKSLKWIYLGYNNLSGEiPYEI 232
CH_IQGAP cd21206
calponin homology (CH) domain found in the IQ motif containing GTPase activating protein ...
 638-714 1.21e-03

calponin homology (CH) domain found in the IQ motif containing GTPase activating protein family; Members of the IQ motif containing GTPase activating protein (IQGAP) family are associated with the Ras GTP-binding protein and act as essential regulators of cytoskeletal function. There are three known IQGAP family members: IQGAP1, IQGAP2, and IQGAP3. They are multi-domain molecules having a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeats, a single WW domain, four IQ motifs that mediate interactions with calmodulin, and a RasGAP related domain that binds active Rho family GTPases. IQGAP1 negatively regulates Ras family GTPases by stimulating their intrinsic GTPase activity. It lacks GAP activity. Both IQGAP1 and IQGAP2 specifically bind to Cdc42 and Rac1, but not to RhoA. Despite similarities to part of the sequence of RasGAP, neither IQGAP1 nor IQGAP2 interacts with Ras. IQGAP3 regulates the organization of the cytoskeleton under the regulation of Rac1 and Cdc42 in neuronal cells. The depletion of IQGAP3 is shown to impair neurite or axon outgrowth in neuronal cells with disorganized cytoskeleton.


Pssm-ID: 409055 [Multi-domain]  Cd Length: 118  Bit Score: 39.52  E-value: 1.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 638 IDQLRKHIEYRLKVALPC--DLGAALTDGVVLCHLANHVRPRSVPSIHVPSpavPKLTMakcrRNVEN---FLEACRKIG 712
Cdd:cd21206   10 LEEAKQWIEACLNEELPPttEFEEELRNGVVLAKLANKFAPKLVPLKKIYD---VGLQF----RHTDNinhFLRALKKIG 82


                 ..
gi 966930836 713 VP 714
Cdd:cd21206   83 LP 84
CH_LIMCH1 cd21278
calponin homology (CH) domain found in LIM and calponin homology domains-containing protein 1; ...
 656-765 1.70e-03

calponin homology (CH) domain found in LIM and calponin homology domains-containing protein 1; LIM and calponin homology domains-containing protein 1 (LIMCH1) acts as an actin stress fiber-associated protein that activates the non-muscle myosin IIa complex by promoting the phosphorylation of its regulatory subunit MRLC/MYL9. It positively regulates actin stress fiber assembly and stabilizes focal adhesions, and therefore negatively regulates cell spreading and cell migration. LIMCH1 contains a single copy of the CH domain at the N-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409127 [Multi-domain]  Cd Length: 118  Bit Score: 39.08  E-value: 1.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 656 DLGAALTDGVVLCHLANHVRPRSVPSIH-VPSPaVPKLTmakcrrNVENFLEACRKIGVPQDNLCSPSDiLQlNLSVKRT 734
Cdd:cd21278   21 DFRSGLENGILLCELLNAIKPGLVKKINrLPTP-IAGLD------NITLFLRGCKELGLKESQLFDPGD-LQ-DTSNRVT 91

                         90       100       110
                 ....*....|....*....|....*....|.
gi 966930836 735 VETLlslgAHSEESSFVCLSIQLLGFVAFYC 765
Cdd:cd21278   92 IKSS----DCSRKLKNVLITIYWLGKAANSC 118
CH_DIXDC1 cd21213
calponin homology (CH) domain found in Dixin and similar proteins; Dixin, also called ...
 640-744 2.41e-03

calponin homology (CH) domain found in Dixin and similar proteins; Dixin, also called coiled-coil protein DIX1, coiled-coil-DIX1, or DIX domain-containing protein 1, is a positive effector of the Wnt signaling pathway. It activates WNT3A signaling via DVL2 and regulates JNK activation by AXIN1 and DVL2. Members of this family contain a single copy of the CH domain at the N-terminus. CH domains are actin filament (F-actin) binding motifs.


Pssm-ID: 409062  Cd Length: 107  Bit Score: 38.05  E-value: 2.41e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 640 QLRKHIEYRLKValpcDLGAALTDGVVLCHLANHVRPRSVPSIHVPspavPKlTMAKCRRNVENFLE--ACRKIGVPQdn 717
Cdd:cd21213   12 QLKKRPGIRPVQ----DLRRDLRDGVALAQLIEILAGEKLPGIDWN----PT-TDAERKENVEKVLQfmASKRIRMHQ-- 80

                         90       100
                 ....*....|....*....|....*..
gi 966930836 718 lCSPSDILQLNLsvKRTVETLLSLGAH 744
Cdd:cd21213   81 -TSAKDIVDGNL--KAIMRLILALAAH 104
CH_VAV2 cd21263
calponin homology (CH) domain found in VAV2 protein and similar proteins; VAV2 is widely ...
 656-727 2.90e-03

calponin homology (CH) domain found in VAV2 protein and similar proteins; VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The model corresponds to CH domain, an actin-binding domain which is present as a single copy in VAV2 protein.


Pssm-ID: 409112  Cd Length: 119  Bit Score: 38.40  E-value: 2.90e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966930836 656 DLGAALTDGVVLCHLANHVRPRSVPSIHVPSPavPKLTMAKCRRNVENFLEACR-KIGVPQDNLCSPSDILQL 727
Cdd:cd21263   31 DLAQALRDGVLLCQLLHNLSPGSIDLKDINFR--PQMSQFLCLKNIRTFLKVCHdKFGLRNSELFDPFDLFDV 101
SCP1 COG5199
Calponin [Cytoskeleton];
636-726 3.24e-03

Calponin [Cytoskeleton];


Pssm-ID: 227526 [Multi-domain]  Cd Length: 178  Bit Score: 39.13  E-value: 3.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836 636 ELIDQLRKHIEYRL--KVALPCDLGAALTDGVVLCHLANHVRPRSVPSIHVPSPAVPkltmakcRRNVENFLEACRKIGV 713
Cdd:COG5199   13 KQQKEVTLWIETVLgeKFEPPGDLLSLLKDGVRLCRILNEASPLDIKYKESKMPFVQ-------MENISSFINGLKKLRV 85

                         90
                 ....*....|...
gi 966930836 714 PQDNLCSPSDILQ 726
Cdd:COG5199   86 PEYELFQTNDLFE 98
LRR_8 pfam13855
Leucine rich repeat;
106-162 3.87e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.35  E-value: 3.87e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 966930836  106 SLENLNLYQNCIRYI-PEAILNLQALTFLNISRNQLSTL-PVHLCNLP-LKVLIASNNKL 162
Cdd:pfam13855   2 NLRSLDLSNNRLTSLdDGAFKGLSNLKVLDLSNNLLTTLsPGAFSGLPsLRYLDLSGNRL 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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