NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|967505963|ref|XP_014983131|]
View 

zinc finger MYM-type protein 3 isoform X3 [Macaca mulatta]

Protein Classification

DHHC family palmitoyltransferase; LCP family protein( domain architecture ID 13363461)

DHHC family palmitoyltransferase may catalyze the addition of palmitate onto various protein substrates and be involved in a variety of cellular processes| LytR-CpsA-Psr (LCP) family protein is implicated in the attachment of anionic polymers to cell wall peptidoglycan in bacteria

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
DUF3504 pfam12012
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. ...
 1176-1344 1.06e-83

Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.


:

Pssm-ID: 463430  Cd Length: 162  Bit Score: 270.29  E-value: 1.06e-83
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  1176 VFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCttprGTTKVVSIRYYAPvrqr 1255
Cdd:pfam12012    1 VFSRVEEEHLWECKQLGAHSPIVLLNTLVYFNTKYFNLRTVEEHRRLSFSNVVRHTKPN----PREKSTYLRYYEP---- 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  1256 kGRDTGPGKRKREDEA--PILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPERSCIAESPLWYSVIPMDRS 1333
Cdd:pfam12012   73 -PDQVETGGRKKRDEGvnKVVEQHENSENPLRCPVKLYEFYLSKCPESVKQRKDVFYLQPEPSCVPDSPLWYSSQPLGRN 151

                          170
                   ....*....|.
gi 967505963  1334 MLESMLNRILA 1344
Cdd:pfam12012  152 TLESMLTRILL 162
PHA03307 super family cl33723
transcriptional regulator ICP4; Provisional
 2-307 3.00e-12

transcriptional regulator ICP4; Provisional


The actual alignment was detected with superfamily member PHA03307:

Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 71.74  E-value: 3.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963    2 DPSDFPSPFDPLTLPEKPLAGD----LPVDMEFGEDLLESQTAPTRGWAPPGPSPSSGALDLLDTPAGL-EKDPGVLDGA 76
Cdd:PHA03307   66 EPPTGPPPGPGTEAPANESRSTptwsLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLsEMLRPVGSPG 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   77 TELLGLGGLLYKAPSPPEVD--HGPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGllEPLAP----DSPI 150
Cdd:PHA03307  146 PPPAASPPAAGASPAAVASDaaSSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRS--SPISAsassPAPA 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  151 TLQSPHIEEEETTSIATARRGSP---GQEEELPQGQPQSPNAP-----PSPSVGETLGDGINSSQTKPGGSSPPAHPSLP 222
Cdd:PHA03307  224 PGRSAADDAGASSSDSSSSESSGcgwGPENECPLPRPAPITLPtriweASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  223 GDGLTAkasekPPERVQKRSERVRRAEPPKP---EVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPRRSPRMSLR-SSV 298
Cdd:PHA03307  304 GSGPAP-----SSPRASSSSSSSRESSSSSTsssSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRApSSP 378


                  ....*....
gi 967505963  299 SQRAGRSAV 307
Cdd:PHA03307  379 AASAGRPTR 387
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 495-534 4.59e-07

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 47.37  E-value: 4.59e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   495 TRVYPCVWCKTLCKNFEMLSHVDRNGKTSLFCSLCCTTSY 534
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTVIVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 448-490 8.13e-06

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.90  E-value: 8.13e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 967505963   448 LKTNCCDQCGAYIYTKtgsPGPELLFHEGQQKRFCNTTCLGAY 490
Cdd:pfam06467    1 LVKATCWFCKKLIKNK---PTVIVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 350-391 9.14e-06

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.90  E-value: 9.14e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 967505963   350 SGKKTCTFCKKEIWNTKDsvVAQTGSGGSFHEFCTSVCLSLY 391
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPT--VIVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 588-625 1.31e-05

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.51  E-value: 1.31e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   588 GIHLSCHYCHSLFSGKPE--VLDWQDQVFQFCCRDCCEDF 625
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTviVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 676-712 3.37e-05

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 42.36  E-value: 3.37e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   676 LCCITCTYCSQTCQRG---VTEQLDGSTWDFCSEDCKSKY 712
Cdd:pfam06467    1 LVKATCWFCKKLIKNKptvIVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 717-753 1.90e-04

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 40.05  E-value: 1.90e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   717 CKAARCHACKRQGKLLET---IHWRGQIRHFCNQQCLLRF 753
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 543-580 8.66e-04

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 38.12  E-value: 8.66e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   543 GPPRPCSFCRRSLSDPCYYNKVDR--TVYQFCSPSCWTKF 580
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTVIVLQNdgSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 630-666 1.92e-03

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 37.35  E-value: 1.92e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   630 GVVSQCEHCRQEKLLHEK---LRFSGVEKSFCSEGCVLLY 666
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
TRASH smart00746
metallochaperone-like domain;
313-349 3.25e-03

metallochaperone-like domain;


:

Pssm-ID: 214799  Cd Length: 39  Bit Score: 36.59  E-value: 3.25e-03
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    313 CAHCRTPLQKGQTA--YQRKGLPQLFCSSSCLTTFSKKP 349
Cdd:smart00746    1 CSFCGKDIYNPGTGimVVNDGKVYYFCSSKCLSKFKKKR 39
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 406-442 4.80e-03

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


:

Pssm-ID: 428958  Cd Length: 40  Bit Score: 36.19  E-value: 4.80e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   406 ADATRCSICQKTGEVLHE---VSNGSVVHRLCSDSCFSKF 442
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
 
Name Accession Description Interval E-value
DUF3504 pfam12012
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. ...
 1176-1344 1.06e-83

Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.


Pssm-ID: 463430  Cd Length: 162  Bit Score: 270.29  E-value: 1.06e-83
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  1176 VFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCttprGTTKVVSIRYYAPvrqr 1255
Cdd:pfam12012    1 VFSRVEEEHLWECKQLGAHSPIVLLNTLVYFNTKYFNLRTVEEHRRLSFSNVVRHTKPN----PREKSTYLRYYEP---- 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  1256 kGRDTGPGKRKREDEA--PILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPERSCIAESPLWYSVIPMDRS 1333
Cdd:pfam12012   73 -PDQVETGGRKKRDEGvnKVVEQHENSENPLRCPVKLYEFYLSKCPESVKQRKDVFYLQPEPSCVPDSPLWYSSQPLGRN 151

                          170
                   ....*....|.
gi 967505963  1334 MLESMLNRILA 1344
Cdd:pfam12012  152 TLESMLTRILL 162
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2-307 3.00e-12

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 71.74  E-value: 3.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963    2 DPSDFPSPFDPLTLPEKPLAGD----LPVDMEFGEDLLESQTAPTRGWAPPGPSPSSGALDLLDTPAGL-EKDPGVLDGA 76
Cdd:PHA03307   66 EPPTGPPPGPGTEAPANESRSTptwsLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLsEMLRPVGSPG 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   77 TELLGLGGLLYKAPSPPEVD--HGPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGllEPLAP----DSPI 150
Cdd:PHA03307  146 PPPAASPPAAGASPAAVASDaaSSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRS--SPISAsassPAPA 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  151 TLQSPHIEEEETTSIATARRGSP---GQEEELPQGQPQSPNAP-----PSPSVGETLGDGINSSQTKPGGSSPPAHPSLP 222
Cdd:PHA03307  224 PGRSAADDAGASSSDSSSSESSGcgwGPENECPLPRPAPITLPtriweASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  223 GDGLTAkasekPPERVQKRSERVRRAEPPKP---EVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPRRSPRMSLR-SSV 298
Cdd:PHA03307  304 GSGPAP-----SSPRASSSSSSSRESSSSSTsssSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRApSSP 378


                  ....*....
gi 967505963  299 SQRAGRSAV 307
Cdd:PHA03307  379 AASAGRPTR 387
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 495-534 4.59e-07

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 47.37  E-value: 4.59e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   495 TRVYPCVWCKTLCKNFEMLSHVDRNGKTSLFCSLCCTTSY 534
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTVIVLQNDGSVGQFCSQSCLDSY 40
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 12-311 2.16e-06

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 51.99  E-value: 2.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   12 PLTLPEKPLAGDLPVDMEFGEDLLESQTAPTRGWAPPGPSPSSGALDLLDTPAGLEKDPGVLD-GATELLGLGGLLYKAP 90
Cdd:COG5180   158 SDPILAKDPDGDSASTLPPPAEKLDKVLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLTGGaDHPRPEAASSPKVDPP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   91 SPPE-------VDHGPEGTLAWDAGDqtLEPGPGGQTPEvvPPDPGAGANSCSPEGlleplAPDSPITLQSPHIEEEETT 163
Cdd:COG5180   238 STSEarsrpatVDAQPEMRPPADAKE--RRRAAIGDTPA--AEPPGLPVLEAGSEP-----QSDAPEAETARPIDVKGVA 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  164 SIATA-------------RRGSPGQEEELPQGQPQS---PNAPPSPS-VGETLGDGINSSQTKP--GGSSPPAHPSLPGD 224
Cdd:COG5180   309 SAPPAtrpvrppggardpGTPRPGQPTERPAGVPEAasdAGQPPSAYpPAEEAVPGKPLEQGAPrpGSSGGDGAPFQPPN 388

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  225 GLTAKAS-EKPPERVQKRSERVRRAEPPKP---EVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPRRSPRMSLRSSVSQ 300
Cdd:COG5180   389 GAPQPGLgRRGAPGPPMGAGDLVQAALDGGgreTASLGGAAGGAGQGPKADFVPGDAESVSGPAGLADQAGAAASTAMAD 468

                         330
                  ....*....|.
gi 967505963  301 RAGRSAVGTKM 311
Cdd:COG5180   469 FVAPVTDATPV 479
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 34-272 6.61e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 50.69  E-value: 6.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963    34 LLESQTAPTRGWAPPGPSPSSGALDLLD-TPAGlekdpgVLDGATELlglggllykAPSPPEVDHGPEGT----LAWDAG 108
Cdd:pfam05109  448 LPSSTHVPTNLTAPASTGPTVSTADVTSpTPAG------TTSGASPV---------TPSPSPRDNGTESKapdmTSPTSA 512

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   109 DQTLEPGPGGQTPEVVPPDPgagaNSCSPEglLEPLAPDSPITLQSPHIEEEE--------TTSIATARRGSPGQEEELP 180
Cdd:pfam05109  513 VTTPTPNATSPTPAVTTPTP----NATSPT--LGKTSPTSAVTTPTPNATSPTpavttptpNATIPTLGKTSPTSAVTTP 586

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   181 qgqpqSPNAPpSPSVGETLGDGINSSQTKPGGSSPPAHPSLPGDGLTAKASEKPPERVQKRSERVRRaeppkPEVVDSTE 260
Cdd:pfam05109  587 -----TPNAT-SPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLR-----PSSISETL 655

                          250
                   ....*....|..
gi 967505963   261 SIPVSDEDSDAM 272
Cdd:pfam05109  656 SPSTSDNSTSHM 667
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 448-490 8.13e-06

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.90  E-value: 8.13e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 967505963   448 LKTNCCDQCGAYIYTKtgsPGPELLFHEGQQKRFCNTTCLGAY 490
Cdd:pfam06467    1 LVKATCWFCKKLIKNK---PTVIVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 350-391 9.14e-06

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.90  E-value: 9.14e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 967505963   350 SGKKTCTFCKKEIWNTKDsvVAQTGSGGSFHEFCTSVCLSLY 391
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPT--VIVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 588-625 1.31e-05

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.51  E-value: 1.31e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   588 GIHLSCHYCHSLFSGKPE--VLDWQDQVFQFCCRDCCEDF 625
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTviVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 676-712 3.37e-05

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 42.36  E-value: 3.37e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   676 LCCITCTYCSQTCQRG---VTEQLDGSTWDFCSEDCKSKY 712
Cdd:pfam06467    1 LVKATCWFCKKLIKNKptvIVLQNDGSVGQFCSQSCLDSY 40
TRASH smart00746
metallochaperone-like domain;
500-538 6.10e-05

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 41.59  E-value: 6.10e-05
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    500 CVWCKTLCKNFEMLSHVDRNGKTSLFCSLCCTTSYKVKQ 538
Cdd:smart00746    1 CSFCGKDIYNPGTGIMVVNDGKVYYFCSSKCLSKFKKKR 39
TRASH smart00746
metallochaperone-like domain;
453-494 1.19e-04

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 40.44  E-value: 1.19e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 967505963    453 CDQCGAYIYTKTGspgPELLFHEGQQKRFCNTTCLGAYKKKN 494
Cdd:smart00746    1 CSFCGKDIYNPGT---GIMVVNDGKVYYFCSSKCLSKFKKKR 39
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 717-753 1.90e-04

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 40.05  E-value: 1.90e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   717 CKAARCHACKRQGKLLET---IHWRGQIRHFCNQQCLLRF 753
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
TRASH smart00746
metallochaperone-like domain;
593-629 3.62e-04

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 39.28  E-value: 3.62e-04
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    593 CHYCHSLFS--GKPEVLDWQDQVFQFCCRDCCEDFKRLR 629
Cdd:smart00746    1 CSFCGKDIYnpGTGIMVVNDGKVYYFCSSKCLSKFKKKR 39
TRASH smart00746
metallochaperone-like domain;
681-713 6.40e-04

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 38.51  E-value: 6.40e-04
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 967505963    681 CTYCSQTCQRGVTE---QLDGSTWDFCSEDCKSKYL 713
Cdd:smart00746    1 CSFCGKDIYNPGTGimvVNDGKVYYFCSSKCLSKFK 36
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 543-580 8.66e-04

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 38.12  E-value: 8.66e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   543 GPPRPCSFCRRSLSDPCYYNKVDR--TVYQFCSPSCWTKF 580
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTVIVLQNdgSVGQFCSQSCLDSY 40
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 106-244 1.27e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 42.83  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  106 DAGDQTLEPGPGGQTPEVVP-PDPGAGANSCSPEGLLEPLAPDSPITLQSPHIEEEETTSIATARR-----GSPGQEEEL 179
Cdd:NF040712  182 DEARWLIDPDFGRPLRPLATvPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRrragvEQPEDEPVG 261

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 967505963  180 PQGQPQSPNAPPSPSVGETLGDGINSS--QTKPGGSSP--PAHPSLPGDGLTAKASEKPPERVQKRSER 244
Cdd:NF040712  262 PGAAPAAEPDEATRDAGEPPAPGAAETpeAAEPPAPAPaaPAAPAAPEAEEPARPEPPPAPKPKRRRRR 330
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 630-666 1.92e-03

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 37.35  E-value: 1.92e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   630 GVVSQCEHCRQEKLLHEK---LRFSGVEKSFCSEGCVLLY 666
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
TRASH smart00746
metallochaperone-like domain;
313-349 3.25e-03

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 36.59  E-value: 3.25e-03
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    313 CAHCRTPLQKGQTA--YQRKGLPQLFCSSSCLTTFSKKP 349
Cdd:smart00746    1 CSFCGKDIYNPGTGimVVNDGKVYYFCSSKCLSKFKKKR 39
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 406-442 4.80e-03

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 36.19  E-value: 4.80e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   406 ADATRCSICQKTGEVLHE---VSNGSVVHRLCSDSCFSKF 442
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
TRASH smart00746
metallochaperone-like domain;
548-582 6.93e-03

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 35.82  E-value: 6.93e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 967505963    548 CSFCRRSLSDPCYYNKV--DRTVYQFCSPSCWTKFQR 582
Cdd:smart00746    1 CSFCGKDIYNPGTGIMVvnDGKVYYFCSSKCLSKFKK 37
TRASH smart00746
metallochaperone-like domain;
722-757 9.41e-03

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 35.43  E-value: 9.41e-03
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    722 CHACKRQGKLLETIH---WRGQIRHFCNQQCLLRFYSQQ 757
Cdd:smart00746    1 CSFCGKDIYNPGTGImvvNDGKVYYFCSSKCLSKFKKKR 39
 
Name Accession Description Interval E-value
DUF3504 pfam12012
Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. ...
 1176-1344 1.06e-83

Domain of unknown function (DUF3504); This presumed domain is functionally uncharacterized. This domain is found in eukaryotes. This domain is typically between 156 to 173 amino acids in length.


Pssm-ID: 463430  Cd Length: 162  Bit Score: 270.29  E-value: 1.06e-83
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  1176 VFSRVEEEHLWECKQLGVYSPFVLLNTLMFFNTKFFGLQTAEEHMQLSFTNVVRQSRKCttprGTTKVVSIRYYAPvrqr 1255
Cdd:pfam12012    1 VFSRVEEEHLWECKQLGAHSPIVLLNTLVYFNTKYFNLRTVEEHRRLSFSNVVRHTKPN----PREKSTYLRYYEP---- 72

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  1256 kGRDTGPGKRKREDEA--PILEQRENRMNPLRCPVKFYEFYLSKCPESLRTRNDVFYLQPERSCIAESPLWYSVIPMDRS 1333
Cdd:pfam12012   73 -PDQVETGGRKKRDEGvnKVVEQHENSENPLRCPVKLYEFYLSKCPESVKQRKDVFYLQPEPSCVPDSPLWYSSQPLGRN 151

                          170
                   ....*....|.
gi 967505963  1334 MLESMLNRILA 1344
Cdd:pfam12012  152 TLESMLTRILL 162
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2-307 3.00e-12

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 71.74  E-value: 3.00e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963    2 DPSDFPSPFDPLTLPEKPLAGD----LPVDMEFGEDLLESQTAPTRGWAPPGPSPSSGALDLLDTPAGL-EKDPGVLDGA 76
Cdd:PHA03307   66 EPPTGPPPGPGTEAPANESRSTptwsLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLsEMLRPVGSPG 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   77 TELLGLGGLLYKAPSPPEVD--HGPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGllEPLAP----DSPI 150
Cdd:PHA03307  146 PPPAASPPAAGASPAAVASDaaSSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRS--SPISAsassPAPA 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  151 TLQSPHIEEEETTSIATARRGSP---GQEEELPQGQPQSPNAP-----PSPSVGETLGDGINSSQTKPGGSSPPAHPSLP 222
Cdd:PHA03307  224 PGRSAADDAGASSSDSSSSESSGcgwGPENECPLPRPAPITLPtriweASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  223 GDGLTAkasekPPERVQKRSERVRRAEPPKP---EVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPRRSPRMSLR-SSV 298
Cdd:PHA03307  304 GSGPAP-----SSPRASSSSSSSRESSSSSTsssSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRApSSP 378


                  ....*....
gi 967505963  299 SQRAGRSAV 307
Cdd:PHA03307  379 AASAGRPTR 387
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 495-534 4.59e-07

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 47.37  E-value: 4.59e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   495 TRVYPCVWCKTLCKNFEMLSHVDRNGKTSLFCSLCCTTSY 534
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTVIVLQNDGSVGQFCSQSCLDSY 40
PHA03247 PHA03247
large tegument protein UL36; Provisional
 7-299 1.35e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.40  E-value: 1.35e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963    7 PSPFDPLTlPEKPLAGDLPVdmefgedlleSQTAPTRGWAPPGPSPSSGALDLLDTPAGLEKDPGVLDGATELLGLGGLL 86
Cdd:PHA03247 2734 ALPAAPAP-PAVPAGPATPG----------GPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   87 YKAPsPPEVDHGPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGllePLAPDSPItlqsphieeeettsia 166
Cdd:PHA03247 2803 DPAD-PPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG---SVAPGGDV---------------- 2862

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  167 tARRGSPGQEeelpqgqPQSPNAPPSPSVgETLGDGINSSQTKPGGSSPPAHPSLPGDGLTAKASEKPPERVQKRSERVR 246
Cdd:PHA03247 2863 -RRRPPSRSP-------AAKPAAPARPPV-RRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP 2933

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 967505963  247 RaEPPKPEVVDSTESIPVSDEDSDAMVDDPNDEDFVPFR---PRR---SPRMSLRSSVS 299
Cdd:PHA03247 2934 P-PPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRvavPRFrvpQPAPSREAPAS 2991
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 12-311 2.16e-06

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 51.99  E-value: 2.16e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   12 PLTLPEKPLAGDLPVDMEFGEDLLESQTAPTRGWAPPGPSPSSGALDLLDTPAGLEKDPGVLD-GATELLGLGGLLYKAP 90
Cdd:COG5180   158 SDPILAKDPDGDSASTLPPPAEKLDKVLTEPRDALKDSPEKLDRPKVEVKDEAQEEPPDLTGGaDHPRPEAASSPKVDPP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   91 SPPE-------VDHGPEGTLAWDAGDqtLEPGPGGQTPEvvPPDPGAGANSCSPEGlleplAPDSPITLQSPHIEEEETT 163
Cdd:COG5180   238 STSEarsrpatVDAQPEMRPPADAKE--RRRAAIGDTPA--AEPPGLPVLEAGSEP-----QSDAPEAETARPIDVKGVA 308

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  164 SIATA-------------RRGSPGQEEELPQGQPQS---PNAPPSPS-VGETLGDGINSSQTKP--GGSSPPAHPSLPGD 224
Cdd:COG5180   309 SAPPAtrpvrppggardpGTPRPGQPTERPAGVPEAasdAGQPPSAYpPAEEAVPGKPLEQGAPrpGSSGGDGAPFQPPN 388

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  225 GLTAKAS-EKPPERVQKRSERVRRAEPPKP---EVVDSTESIPVSDEDSDAMVDDPNDEDFVPFRPRRSPRMSLRSSVSQ 300
Cdd:COG5180   389 GAPQPGLgRRGAPGPPMGAGDLVQAALDGGgreTASLGGAAGGAGQGPKADFVPGDAESVSGPAGLADQAGAAASTAMAD 468

                         330
                  ....*....|.
gi 967505963  301 RAGRSAVGTKM 311
Cdd:COG5180   469 FVAPVTDATPV 479
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
 34-272 6.61e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 50.69  E-value: 6.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963    34 LLESQTAPTRGWAPPGPSPSSGALDLLD-TPAGlekdpgVLDGATELlglggllykAPSPPEVDHGPEGT----LAWDAG 108
Cdd:pfam05109  448 LPSSTHVPTNLTAPASTGPTVSTADVTSpTPAG------TTSGASPV---------TPSPSPRDNGTESKapdmTSPTSA 512

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   109 DQTLEPGPGGQTPEVVPPDPgagaNSCSPEglLEPLAPDSPITLQSPHIEEEE--------TTSIATARRGSPGQEEELP 180
Cdd:pfam05109  513 VTTPTPNATSPTPAVTTPTP----NATSPT--LGKTSPTSAVTTPTPNATSPTpavttptpNATIPTLGKTSPTSAVTTP 586

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   181 qgqpqSPNAPpSPSVGETLGDGINSSQTKPGGSSPPAHPSLPGDGLTAKASEKPPERVQKRSERVRRaeppkPEVVDSTE 260
Cdd:pfam05109  587 -----TPNAT-SPTVGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLR-----PSSISETL 655

                          250
                   ....*....|..
gi 967505963   261 SIPVSDEDSDAM 272
Cdd:pfam05109  656 SPSTSDNSTSHM 667
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 448-490 8.13e-06

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.90  E-value: 8.13e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|...
gi 967505963   448 LKTNCCDQCGAYIYTKtgsPGPELLFHEGQQKRFCNTTCLGAY 490
Cdd:pfam06467    1 LVKATCWFCKKLIKNK---PTVIVLQNDGSVGQFCSQSCLDSY 40
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-253 9.05e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 9.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963    2 DPSDFPSPFDPLTLPEKPLAGDLPvdmefGEDLLESQTAPTRGWAPPGPSPSSGALDLLDTPAGLEKDPGVLDGATELLG 81
Cdd:PHA03247 2604 DRGDPRGPAPPSPLPPDTHAPDPP-----PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASS 2678

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   82 LGGLLYKAPSPPEVdhGPEGTLAwDAGDQ--TLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPLAPDSPITLQSPHIEE 159
Cdd:PHA03247 2679 PPQRPRRRAARPTV--GSLTSLA-DPPPPppTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPA 2755

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  160 EETTSIATARRGSPGQEEELPQGQPQSPNAPPSPSVGETLgdgiNSSQTKPGGSSPPAHPSLPGDGLTAKASEKPPERVQ 239
Cdd:PHA03247 2756 RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESR----ESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPP 2831

                         250
                  ....*....|....
gi 967505963  240 KRSERVRRAEPPKP 253
Cdd:PHA03247 2832 TSAQPTAPPPPPGP 2845
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 350-391 9.14e-06

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.90  E-value: 9.14e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 967505963   350 SGKKTCTFCKKEIWNTKDsvVAQTGSGGSFHEFCTSVCLSLY 391
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPT--VIVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 588-625 1.31e-05

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 43.51  E-value: 1.31e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   588 GIHLSCHYCHSLFSGKPE--VLDWQDQVFQFCCRDCCEDF 625
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTviVLQNDGSVGQFCSQSCLDSY 40
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 676-712 3.37e-05

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 42.36  E-value: 3.37e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   676 LCCITCTYCSQTCQRG---VTEQLDGSTWDFCSEDCKSKY 712
Cdd:pfam06467    1 LVKATCWFCKKLIKNKptvIVLQNDGSVGQFCSQSCLDSY 40
TRASH smart00746
metallochaperone-like domain;
500-538 6.10e-05

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 41.59  E-value: 6.10e-05
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    500 CVWCKTLCKNFEMLSHVDRNGKTSLFCSLCCTTSYKVKQ 538
Cdd:smart00746    1 CSFCGKDIYNPGTGIMVVNDGKVYYFCSSKCLSKFKKKR 39
TRASH smart00746
metallochaperone-like domain;
453-494 1.19e-04

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 40.44  E-value: 1.19e-04
                            10        20        30        40
                    ....*....|....*....|....*....|....*....|..
gi 967505963    453 CDQCGAYIYTKTGspgPELLFHEGQQKRFCNTTCLGAYKKKN 494
Cdd:smart00746    1 CSFCGKDIYNPGT---GIMVVNDGKVYYFCSSKCLSKFKKKR 39
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 88-272 1.70e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.13  E-value: 1.70e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   88 KAPSPPEVDH--GPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPLAP--DSPITLQSPHIEEEETT 163
Cdd:PRK07764  605 SSGPPEEAARpaAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGgdGWPAKAGGAAPAAPPPA 684

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  164 SIATARRGSPGQEEelPQGQPQSPNAPPSPSVGETLGDGINSSQT-------KPGGSSPPAHPSLPGDGLTAKASEKPPE 236
Cdd:PRK07764  685 PAPAAPAAPAGAAP--AQPAPAPAATPPAGQADDPAAQPPQAAQGasapspaADDPVPLPPEPDDPPDPAGAPAQPPPPP 762

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 967505963  237 RV------QKRSERVRRAEPPKPEVVDSTESIPVSDEDSDAM 272
Cdd:PRK07764  763 APapaaapAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEV 804
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 717-753 1.90e-04

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 40.05  E-value: 1.90e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   717 CKAARCHACKRQGKLLET---IHWRGQIRHFCNQQCLLRF 753
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 93-247 1.95e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 45.75  E-value: 1.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   93 PEVDHGPEGTLA--------WDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPLAPDSPITLQSPHIEEEETTS 164
Cdd:PRK07764  365 PSASDDERGLLArlerlerrLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSP 444

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  165 IATARRGSPGQEEELPQGQPQS-PNAPPSPSVGETLGDGINSSQTKPGGSSPPAHPSLPGDGLTAKA-SEKPPERVQKRS 242
Cdd:PRK07764  445 AGNAPAGGAPSPPPAAAPSAQPaPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATlRERWPEILAAVP 524


                  ....*
gi 967505963  243 ERVRR 247
Cdd:PRK07764  525 KRSRK 529
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-247 2.90e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.70  E-value: 2.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   46 APPGPSPSSGALDLLDTPAGlekdPGVLDGATellglggllykAPSPPEVDHGPEGTLAWDAGDQTLEPGPGGQTPEVVP 125
Cdd:PHA03247 2492 AGAAPDPGGGGPPDPDAPPA----PSRLAPAI-----------LPDEPVGEPVHPRMLTWIRGLEELASDDAGDPPPPLP 2556

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  126 PDPgaganscspegllEPLAPDS--PITLQSPHIEEEETTSIAT--------ARRGSPGQEEELPQGQPQSPNAPPSPsv 195
Cdd:PHA03247 2557 PAA-------------PPAAPDRsvPPPRPAPRPSEPAVTSRARrpdappqsARPRAPVDDRGDPRGPAPPSPLPPDT-- 2621

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 967505963  196 getlgdginsSQTKPGGSSPPAHPSLPGDGLTAKASEKPPERVQKRSERVRR 247
Cdd:PHA03247 2622 ----------HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663
TRASH smart00746
metallochaperone-like domain;
593-629 3.62e-04

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 39.28  E-value: 3.62e-04
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    593 CHYCHSLFS--GKPEVLDWQDQVFQFCCRDCCEDFKRLR 629
Cdd:smart00746    1 CSFCGKDIYnpGTGIMVVNDGKVYYFCSSKCLSKFKKKR 39
PHA03169 PHA03169
hypothetical protein; Provisional
 31-255 4.10e-04

hypothetical protein; Provisional


Pssm-ID: 223003 [Multi-domain]  Cd Length: 413  Bit Score: 44.58  E-value: 4.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   31 GEDLLESQTAPTRGWAP---PGPSPSSGALDLLDTPAGLEKDPGvlDGATELLGlggllykAPSPPEVD-----HGPEGT 102
Cdd:PHA03169   96 GSESVGSPTPSPSGSAEelaSGLSPENTSGSSPESPASHSPPPS--PPSHPGPH-------EPAPPESHnpspnQQPSSF 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  103 LAWDAGDQTLEPGPGGQTPEVVPPDPGAGANSCSPEGLLEPlaPDSPITLQSPHIEEEEttsiaTARRGSPGQEEELPQG 182
Cdd:PHA03169  167 LQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSP--PDEPGEPQSPTPQQAP-----SPNTQQAVEHEDEPTE 239

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  183 qPQSPNAPPSPSVGETLGDGINSSQTKPGG--------SSPPAHPSLPGDGltAKASEKPPERVQKR----SERVRRAEP 250
Cdd:PHA03169  240 -PEREGPPFPGHRSHSYTVVGWKPSTRPGGvpklclrcTSHPSHRSRLPEG--QQSEDKVPRKYQARrrffRQVLPSILP 316


                  ....*
gi 967505963  251 PKPEV 255
Cdd:PHA03169  317 PRPGP 321
TRASH smart00746
metallochaperone-like domain;
681-713 6.40e-04

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 38.51  E-value: 6.40e-04
                            10        20        30
                    ....*....|....*....|....*....|....*.
gi 967505963    681 CTYCSQTCQRGVTE---QLDGSTWDFCSEDCKSKYL 713
Cdd:smart00746    1 CSFCGKDIYNPGTGimvVNDGKVYYFCSSKCLSKFK 36
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 543-580 8.66e-04

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 38.12  E-value: 8.66e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   543 GPPRPCSFCRRSLSDPCYYNKVDR--TVYQFCSPSCWTKF 580
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTVIVLQNdgSVGQFCSQSCLDSY 40
SepH NF040712
septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces ...
 106-244 1.27e-03

septation protein SepH; Septation protein H (SepH) was firstly characterized in Streptomyces venezuelae, and homologs were identified in Mycobacterium smegmatis. SepH contains a N-terminal DUF3071 domain and a conserved C-terminal region. It binds directly to cell division protein FtsZ to stimulate the assembly of FtsZ protofilaments.


Pssm-ID: 468676 [Multi-domain]  Cd Length: 346  Bit Score: 42.83  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  106 DAGDQTLEPGPGGQTPEVVP-PDPGAGANSCSPEGLLEPLAPDSPITLQSPHIEEEETTSIATARR-----GSPGQEEEL 179
Cdd:NF040712  182 DEARWLIDPDFGRPLRPLATvPRLAREPADARPEEVEPAPAAEGAPATDSDPAEAGTPDDLASARRrragvEQPEDEPVG 261

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 967505963  180 PQGQPQSPNAPPSPSVGETLGDGINSS--QTKPGGSSP--PAHPSLPGDGLTAKASEKPPERVQKRSER 244
Cdd:NF040712  262 PGAAPAAEPDEATRDAGEPPAPGAAETpeAAEPPAPAPaaPAAPAAPEAEEPARPEPPPAPKPKRRRRR 330
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 98-276 1.53e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.05  E-value: 1.53e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   98 GPEGTLAWDAGDQTLEPGPGGQTPEVVPPDPGAGA----------------NSCSPEGLLEPLAPDS----PITLQSPHI 157
Cdd:PRK07764  599 GPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAaapaeasaapapgvaaPEHHPKHVAVPDASDGgdgwPAKAGGAAP 678

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  158 EEEETTSIATARRGSPGQEEelPQGQPQSPNAPPSPSVGETLGDGINSSQT-------KPGGSSPPAHPSLPGDGLTAKA 230
Cdd:PRK07764  679 AAPPPAPAPAAPAAPAGAAP--AQPAPAPAATPPAGQADDPAAQPPQAAQGasapspaADDPVPLPPEPDDPPDPAGAPA 756

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 967505963  231 SEKPPERVQKRServrrAEPPKPEVVDSTESiPVSDEDSDAMVDDP 276
Cdd:PRK07764  757 QPPPPPAPAPAA-----APAAAPPPSPPSEE-EEMAEDDAPSMDDE 796
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 630-666 1.92e-03

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 37.35  E-value: 1.92e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   630 GVVSQCEHCRQEKLLHEK---LRFSGVEKSFCSEGCVLLY 666
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
PHA03247 PHA03247
large tegument protein UL36; Provisional
 40-260 2.67e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.62  E-value: 2.67e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963   40 APTRGWAPPGPSPSSGALDLLDTPaglekDPGVLDGATELLGLGgllyKAPSPPEVDHGPEGTLAWDAGDQtlepgpggQ 119
Cdd:PHA03247  270 ETARGATGPPPPPEAAAPNGAAAP-----PDGVWGAALAGAPLA----LPAPPDPPPPAPAGDAEEEDDED--------G 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  120 TPEVVPPDPGAGAN-----------SCSPEGLLEPL-APDSPITLQSPHIEEEETTSIATA--RRGSPGQEEELPQ---- 181
Cdd:PHA03247  333 AMEVVSPLPRPRQHyplgfpkrrrpTWTPPSSLEDLsAGRHHPKRASLPTRKRRSARHAATpfARGPGGDDQTRPAapvp 412

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967505963  182 GQPQSPNAPPSPSVGETLGDGINSSQTKPGGSSPPAHPS-LPGDGLTAKASEKPPERVQKRSERVRRAEPPKPEVVDSTE 260
Cdd:PHA03247  413 ASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPErQPPAPATEPAPDDPDDATRKALDALRERRPPEPPGADLAE 492
TRASH smart00746
metallochaperone-like domain;
313-349 3.25e-03

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 36.59  E-value: 3.25e-03
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    313 CAHCRTPLQKGQTA--YQRKGLPQLFCSSSCLTTFSKKP 349
Cdd:smart00746    1 CSFCGKDIYNPGTGimVVNDGKVYYFCSSKCLSKFKKKR 39
zf-FCS pfam06467
MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM ...
 406-442 4.80e-03

MYM-type Zinc finger with FCS sequence motif; MYM-type zinc fingers were identified in MYM family proteins. Human protein Swiss:Q14202 is involved in a chromosomal translocation and may be responsible for X-linked retardation in XQ13.1. Swiss:Q9UBW7 is also involved in disease. In myeloproliferative disorders it is fused to FGF receptor 1; in atypical myeloproliferative disorders it is rearranged. Members of the family generally are involved in development. This Zn-finger domain functions as a transcriptional trans-activator of late vaccinia viral genes, and orthologues are also found in all nucleocytoplasmic large DNA viruses, NCLDV. This domain is also found fused to the C termini of recombinases from certain prokaryotic transposons.


Pssm-ID: 428958  Cd Length: 40  Bit Score: 36.19  E-value: 4.80e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 967505963   406 ADATRCSICQKTGEVLHE---VSNGSVVHRLCSDSCFSKF 442
Cdd:pfam06467    1 LVKATCWFCKKLIKNKPTvivLQNDGSVGQFCSQSCLDSY 40
TRASH smart00746
metallochaperone-like domain;
548-582 6.93e-03

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 35.82  E-value: 6.93e-03
                            10        20        30
                    ....*....|....*....|....*....|....*..
gi 967505963    548 CSFCRRSLSDPCYYNKV--DRTVYQFCSPSCWTKFQR 582
Cdd:smart00746    1 CSFCGKDIYNPGTGIMVvnDGKVYYFCSSKCLSKFKK 37
TRASH smart00746
metallochaperone-like domain;
722-757 9.41e-03

metallochaperone-like domain;


Pssm-ID: 214799  Cd Length: 39  Bit Score: 35.43  E-value: 9.41e-03
                            10        20        30
                    ....*....|....*....|....*....|....*....
gi 967505963    722 CHACKRQGKLLETIH---WRGQIRHFCNQQCLLRFYSQQ 757
Cdd:smart00746    1 CSFCGKDIYNPGTGImvvNDGKVYYFCSSKCLSKFKKKR 39
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH