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Conserved domains on  [gi|1622912510|ref|XP_014981131|]
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myocardin-related transcription factor B isoform X1 [Macaca mulatta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 421-454 2.94e-10

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


:

Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 56.25  E-value: 2.94e-10
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1622912510  421 LDDLKVSELKTELKLRGLPVSGTKPDLIERLKPY 454
Cdd:pfam02037    1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQEY 34
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
160-185 1.16e-05

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


:

Pssm-ID: 128947  Cd Length: 26  Bit Score: 42.85  E-value: 1.16e-05
                            10        20
                    ....*....|....*....|....*.
gi 1622912510   160 DDLNEKIAQRPGPMELVEKNILPVDS 185
Cdd:smart00707    1 DVLNRKLSQRPTREELEERNILKELS 26
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 218-442 8.68e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 8.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  218 PDQPASQESQGSAASPSEPKVSESPSPVTTNTPAQFASVSPTVPEflkTPPTADQP--PPRPAAPVLPTNTV--SSAKSG 293
Cdd:PHA03247  2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL---PPPTSAQPtaPPPPPGPPPPSLPLggSVAPGG 2860

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  294 PALVK---QSHPKNPNDKHRSKKCKDPKPRVKKLKYHQYIPPDQKGEKNEPQMDSNYARLLQQQQLFLQLQILSQQkqhy 370
Cdd:PHA03247  2861 DVRRRppsRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP---- 2936

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622912510  371 nyqtilPAPFKPLNDKTSNSGNSALNNTTPNtPRQNTSAPVRKPGP---LPSSLDDLKVSELKTElKLRGLPVSG 442
Cdd:PHA03247  2937 ------PRPQPPLAPTTDPAGAGEPSGAVPQ-PWLGALVPGRVAVPrfrVPQPAPSREAPASSTP-PLTGHSLSR 3003
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 117-140 1.49e-04

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


:

Pssm-ID: 460677  Cd Length: 24  Bit Score: 39.56  E-value: 1.49e-04
                           10        20
                   ....*....|....*....|....
gi 1622912510  117 FLKHKIRSRPDRSELVRMHILEET 140
Cdd:pfam02755    1 SLERKLSHRPTREELVERNILPED 24
DUF2130 super family cl38307
Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various ...
 589-624 2.50e-04

Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various hypothetical prokaryotic proteins, has no known function.


The actual alignment was detected with superfamily member pfam09903:

Pssm-ID: 430914 [Multi-domain]  Cd Length: 248  Bit Score: 44.15  E-value: 2.50e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1622912510  589 AEKDRKLQEKEKQIEELKR-KLEQEQKLV-EVLKMQLE 624
Cdd:pfam09903    3 KEKEKQIKDLQEQIEELKRfKAEQSTKLQgEVLEQHCE 40
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
73-97 1.54e-03

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


:

Pssm-ID: 128947  Cd Length: 26  Bit Score: 37.07  E-value: 1.54e-03
                            10        20
                    ....*....|....*....|....*
gi 1622912510    73 VLQLRLQQRRTREQLVDQGIMPPLK 97
Cdd:smart00707    2 VLNRKLSQRPTREELEERNILKELS 26
PTZ00121 super family cl31754
MAEBL; Provisional
 588-664 1.62e-03

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.62e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622912510  588 AAEKDRKLQEKEKQIEELKRKLEQEQKLVEVLKMQLEVEKRGQQQRPLEPQPSAPGHSVNKSDQKHSSLGSSIKDEA 664
Cdd:PTZ00121  1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
 
Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 421-454 2.94e-10

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 56.25  E-value: 2.94e-10
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1622912510  421 LDDLKVSELKTELKLRGLPVSGTKPDLIERLKPY 454
Cdd:pfam02037    1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQEY 34
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
421-452 7.78e-09

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 52.10  E-value: 7.78e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1622912510   421 LDDLKVSELKTELKLRGLPVSGTKPDLIERLK 452
Cdd:smart00513    1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLL 32
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
160-185 1.16e-05

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 42.85  E-value: 1.16e-05
                            10        20
                    ....*....|....*....|....*.
gi 1622912510   160 DDLNEKIAQRPGPMELVEKNILPVDS 185
Cdd:smart00707    1 DVLNRKLSQRPTREELEERNILKELS 26
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 161-184 2.80e-05

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


Pssm-ID: 460677  Cd Length: 24  Bit Score: 41.88  E-value: 2.80e-05
                           10        20
                   ....*....|....*....|....
gi 1622912510  161 DLNEKIAQRPGPMELVEKNILPVD 184
Cdd:pfam02755    1 SLERKLSHRPTREELVERNILPED 24
PHA03247 PHA03247
large tegument protein UL36; Provisional
 218-442 8.68e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 8.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  218 PDQPASQESQGSAASPSEPKVSESPSPVTTNTPAQFASVSPTVPEflkTPPTADQP--PPRPAAPVLPTNTV--SSAKSG 293
Cdd:PHA03247  2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL---PPPTSAQPtaPPPPPGPPPPSLPLggSVAPGG 2860

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  294 PALVK---QSHPKNPNDKHRSKKCKDPKPRVKKLKYHQYIPPDQKGEKNEPQMDSNYARLLQQQQLFLQLQILSQQkqhy 370
Cdd:PHA03247  2861 DVRRRppsRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP---- 2936

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622912510  371 nyqtilPAPFKPLNDKTSNSGNSALNNTTPNtPRQNTSAPVRKPGP---LPSSLDDLKVSELKTElKLRGLPVSG 442
Cdd:PHA03247  2937 ------PRPQPPLAPTTDPAGAGEPSGAVPQ-PWLGALVPGRVAVPrfrVPQPAPSREAPASSTP-PLTGHSLSR 3003
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 117-140 1.49e-04

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


Pssm-ID: 460677  Cd Length: 24  Bit Score: 39.56  E-value: 1.49e-04
                           10        20
                   ....*....|....*....|....
gi 1622912510  117 FLKHKIRSRPDRSELVRMHILEET 140
Cdd:pfam02755    1 SLERKLSHRPTREELVERNILPED 24
DUF2130 pfam09903
Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various ...
 589-624 2.50e-04

Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various hypothetical prokaryotic proteins, has no known function.


Pssm-ID: 430914 [Multi-domain]  Cd Length: 248  Bit Score: 44.15  E-value: 2.50e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1622912510  589 AEKDRKLQEKEKQIEELKR-KLEQEQKLV-EVLKMQLE 624
Cdd:pfam09903    3 KEKEKQIKDLQEQIEELKRfKAEQSTKLQgEVLEQHCE 40
COG4487 COG4487
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
585-624 3.01e-04

Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];


Pssm-ID: 443580 [Multi-domain]  Cd Length: 425  Bit Score: 44.55  E-value: 3.01e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1622912510  585 ELDAAEKDRKLQEKEKQIEELKRKLEQ-EQKLV-EVLKMQLE 624
Cdd:COG4487    167 SLKVAEYEKQLKDMQEQIEELKRKKEQgSTQLQgEVLELEFE 208
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
73-97 1.54e-03

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 37.07  E-value: 1.54e-03
                            10        20
                    ....*....|....*....|....*
gi 1622912510    73 VLQLRLQQRRTREQLVDQGIMPPLK 97
Cdd:smart00707    2 VLNRKLSQRPTREELEERNILKELS 26
PTZ00121 PTZ00121
MAEBL; Provisional
 588-664 1.62e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.62e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622912510  588 AAEKDRKLQEKEKQIEELKRKLEQEQKLVEVLKMQLEVEKRGQQQRPLEPQPSAPGHSVNKSDQKHSSLGSSIKDEA 664
Cdd:PTZ00121  1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
GBP_C cd16269
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ...
 592-636 2.52e-03

Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.


Pssm-ID: 293879 [Multi-domain]  Cd Length: 291  Bit Score: 41.02  E-value: 2.52e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1622912510  592 DRKLQEKEKQIEELKRK---LEQEQKLVEVLKMQLEvEKRGQQQRPLE 636
Cdd:cd16269    190 DQALTEKEKEIEAERAKaeaAEQERKLLEEQQRELE-QKLEDQERSYE 236
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
117-140 2.84e-03

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 36.30  E-value: 2.84e-03
                            10        20
                    ....*....|....*....|....
gi 1622912510   117 FLKHKIRSRPDRSELVRMHILEET 140
Cdd:smart00707    2 VLNRKLSQRPTREELEERNILKEL 25
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 74-95 9.39e-03

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


Pssm-ID: 460677  Cd Length: 24  Bit Score: 34.56  E-value: 9.39e-03
                           10        20
                   ....*....|....*....|..
gi 1622912510   74 LQLRLQQRRTREQLVDQGIMPP 95
Cdd:pfam02755    2 LERKLSHRPTREELVERNILPE 23
 
Name Accession Description Interval E-value
SAP pfam02037
SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding ...
 421-454 2.94e-10

SAP domain; The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.


Pssm-ID: 460424 [Multi-domain]  Cd Length: 35  Bit Score: 56.25  E-value: 2.94e-10
                           10        20        30
                   ....*....|....*....|....*....|....
gi 1622912510  421 LDDLKVSELKTELKLRGLPVSGTKPDLIERLKPY 454
Cdd:pfam02037    1 LSKLTVAELKEELRKRGLPTSGKKAELIERLQEY 34
SAP smart00513
Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;
421-452 7.78e-09

Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation;


Pssm-ID: 128789 [Multi-domain]  Cd Length: 35  Bit Score: 52.10  E-value: 7.78e-09
                            10        20        30
                    ....*....|....*....|....*....|..
gi 1622912510   421 LDDLKVSELKTELKLRGLPVSGTKPDLIERLK 452
Cdd:smart00513    1 LAKLKVSELKDELKKRGLSTSGTKAELVDRLL 32
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
160-185 1.16e-05

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 42.85  E-value: 1.16e-05
                            10        20
                    ....*....|....*....|....*.
gi 1622912510   160 DDLNEKIAQRPGPMELVEKNILPVDS 185
Cdd:smart00707    1 DVLNRKLSQRPTREELEERNILKELS 26
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 161-184 2.80e-05

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


Pssm-ID: 460677  Cd Length: 24  Bit Score: 41.88  E-value: 2.80e-05
                           10        20
                   ....*....|....*....|....
gi 1622912510  161 DLNEKIAQRPGPMELVEKNILPVD 184
Cdd:pfam02755    1 SLERKLSHRPTREELVERNILPED 24
PHA03247 PHA03247
large tegument protein UL36; Provisional
 218-442 8.68e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 8.68e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  218 PDQPASQESQGSAASPSEPKVSESPSPVTTNTPAQFASVSPTVPEflkTPPTADQP--PPRPAAPVLPTNTV--SSAKSG 293
Cdd:PHA03247  2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPL---PPPTSAQPtaPPPPPGPPPPSLPLggSVAPGG 2860

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  294 PALVK---QSHPKNPNDKHRSKKCKDPKPRVKKLKYHQYIPPDQKGEKNEPQMDSNYARLLQQQQLFLQLQILSQQkqhy 370
Cdd:PHA03247  2861 DVRRRppsRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPP---- 2936

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622912510  371 nyqtilPAPFKPLNDKTSNSGNSALNNTTPNtPRQNTSAPVRKPGP---LPSSLDDLKVSELKTElKLRGLPVSG 442
Cdd:PHA03247  2937 ------PRPQPPLAPTTDPAGAGEPSGAVPQ-PWLGALVPGRVAVPrfrVPQPAPSREAPASSTP-PLTGHSLSR 3003
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 117-140 1.49e-04

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


Pssm-ID: 460677  Cd Length: 24  Bit Score: 39.56  E-value: 1.49e-04
                           10        20
                   ....*....|....*....|....
gi 1622912510  117 FLKHKIRSRPDRSELVRMHILEET 140
Cdd:pfam02755    1 SLERKLSHRPTREELVERNILPED 24
DUF2130 pfam09903
Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various ...
 589-624 2.50e-04

Uncharacterized protein conserved in bacteria (DUF2130); This domain, found in various hypothetical prokaryotic proteins, has no known function.


Pssm-ID: 430914 [Multi-domain]  Cd Length: 248  Bit Score: 44.15  E-value: 2.50e-04
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 1622912510  589 AEKDRKLQEKEKQIEELKR-KLEQEQKLV-EVLKMQLE 624
Cdd:pfam09903    3 KEKEKQIKDLQEQIEELKRfKAEQSTKLQgEVLEQHCE 40
COG4487 COG4487
Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];
585-624 3.01e-04

Uncharacterized conserved protein, contains DUF2130 domain [Function unknown];


Pssm-ID: 443580 [Multi-domain]  Cd Length: 425  Bit Score: 44.55  E-value: 3.01e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 1622912510  585 ELDAAEKDRKLQEKEKQIEELKRKLEQ-EQKLV-EVLKMQLE 624
Cdd:COG4487    167 SLKVAEYEKQLKDMQEQIEELKRKKEQgSTQLQgEVLELEFE 208
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
73-97 1.54e-03

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 37.07  E-value: 1.54e-03
                            10        20
                    ....*....|....*....|....*
gi 1622912510    73 VLQLRLQQRRTREQLVDQGIMPPLK 97
Cdd:smart00707    2 VLNRKLSQRPTREELEERNILKELS 26
PTZ00121 PTZ00121
MAEBL; Provisional
 588-664 1.62e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.82  E-value: 1.62e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622912510  588 AAEKDRKLQEKEKQIEELKRKLEQEQKLVEVLKMQLEVEKRGQQQRPLEPQPSAPGHSVNKSDQKHSSLGSSIKDEA 664
Cdd:PTZ00121  1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEA 1739
GBP_C cd16269
Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal ...
 592-636 2.52e-03

Guanylate-binding protein, C-terminal domain; Guanylate-binding protein (GBP), C-terminal domain. Guanylate-binding proteins (GBPs) are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence, and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. This C-terminal domain has been shown to mediate inhibition of endothelial cell proliferation by inflammatory cytokines.


Pssm-ID: 293879 [Multi-domain]  Cd Length: 291  Bit Score: 41.02  E-value: 2.52e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*...
gi 1622912510  592 DRKLQEKEKQIEELKRK---LEQEQKLVEVLKMQLEvEKRGQQQRPLE 636
Cdd:cd16269    190 DQALTEKEKEIEAERAKaeaAEQERKLLEEQQRELE-QKLEDQERSYE 236
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
206-344 2.79e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 41.68  E-value: 2.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  206 FSFDEDSSDALSPDQPASQESQGSAASPSEP-KVSESPSPVTTNTPAQfASVSPTVPEFLKTPPTADQPPPRPaAPVLPT 284
Cdd:PRK14971   363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSaAAAASPSPSQSSAAAQ-PSAPQSATQPAGTPPTVSVDPPAA-VPVNPP 440

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622912510  285 NTVSsaKSGPALVKQSHPKNPNDKHRS-----KKCKDPKPRVKKLKYHQYIPPDQKGEKNEPQMD 344
Cdd:PRK14971   441 STAP--QAVRPAQFKEEKKIPVSKVSSlgpstLRPIQEKAEQATGNIKEAPTGTQKEIFTEEDLQ 503
RPEL smart00707
Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;
117-140 2.84e-03

Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2;


Pssm-ID: 128947  Cd Length: 26  Bit Score: 36.30  E-value: 2.84e-03
                            10        20
                    ....*....|....*....|....
gi 1622912510   117 FLKHKIRSRPDRSELVRMHILEET 140
Cdd:smart00707    2 VLNRKLSQRPTREELEERNILKEL 25
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 214-432 4.51e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.21  E-value: 4.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  214 DALSPDQPASQESQGSAASPSEPKVSESPS-PVTTNTPAqfasvSPTVPEFLKTPPTAdQPPPRPAAPVLPTNTVSSAKS 292
Cdd:PTZ00449   584 DPKHPKDPEEPKKPKRPRSAQRPTRPKSPKlPELLDIPK-----SPKRPESPKSPKRP-PPPQRPSSPERPEGPKIIKSP 657

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622912510  293 GPAlvkqSHPKNPNDkhrskkckdpkPRVKKLKYHQYIPPDQKGEKNEPQMDSNYARLLQQQQLFLQLQILSQQKQHyNY 372
Cdd:PTZ00449   658 KPP----KSPKPPFD-----------PKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPR-PL 721

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622912510  373 QTILP----APFKPLNDKTSNSGNSALNNTTPNTPRQNTsapvrKPGPLPSSLDDLKVSELKTE 432
Cdd:PTZ00449   722 PPKLPrdeeFPFEPIGDPDAEQPDDIEFFTPPEEERTFF-----HETPADTPLPDILAEEFKEE 780
RPEL pfam02755
RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL ...
 74-95 9.39e-03

RPEL repeat; The RPEL repeat is named after four conserved amino acids it contains. The RPEL motif binds to actin.


Pssm-ID: 460677  Cd Length: 24  Bit Score: 34.56  E-value: 9.39e-03
                           10        20
                   ....*....|....*....|..
gi 1622912510   74 LQLRLQQRRTREQLVDQGIMPP 95
Cdd:pfam02755    2 LERKLSHRPTREELVERNILPE 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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