|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
251-458 |
1.49e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 99.70 E-value: 1.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 330
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 331 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFEDVERHYARALSIy 410
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 967498756 411 ealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKEDLPAPL 458
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
267-492 |
1.70e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 95.76 E-value: 1.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 267 QGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDAL--QIREQTLGPEHPAVAATLNNL 344
Cdd:NF040586 405 RGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 345 AVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKT 424
Cdd:NF040586 485 GADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLS 564
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 967498756 425 KNNLASAYLKQNKYQQAEEL-------YKEILHKEDLPAPLGTAGDTEQALRRSSSLSKIRESIRRGSEKLVSRL 492
Cdd:NF040586 565 ANNLARDLRELGRYAEALDLleealerYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRF 639
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
251-444 |
1.59e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 92.67 E-value: 1.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTL 330
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 331 -GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSI 409
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 967498756 410 YEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEEL 444
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
266-492 |
2.66e-17 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 85.36 E-value: 2.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 266 GQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLA 345
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 346 VLYGKRGRYREAEPLCQRALEIREKVL-GADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKT 424
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 967498756 425 KNNLASAYLKQNKYQQAEELYKEILHK------EDLPAPLGTAGDTEQALRRSSSLSKIRESIRRGSEKLVSRL 492
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVLDRyrrvlgEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
294-370 |
6.70e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 72.42 E-value: 6.70e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 967498756 294 DVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREK 370
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
251-387 |
2.56e-15 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 79.19 E-value: 2.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPD-VATMLNiLALVYRDQNKYKEATELLHDALQIREQT 329
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 967498756 330 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLA 387
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYTLAAAVNLA 738
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
292-449 |
5.58e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 5.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 292 HPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYReAEPLCQRALEIRekv 371
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR-ALEYAERALKLA--- 833
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 967498756 372 lgadhPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:TIGR02917 834 -----PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
68-195 |
2.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 68 EELVRQTRQVVQGLEALRAEHRGLAGHLAEALAGQgpvtgLEMLEEKQQVVSHSLEAIELGLGEAQVLLALSAHvgALEA 147
Cdd:COG4913 312 ERLEARLDALREELDELEAQIRGNGGDRLEQLERE-----IERLERELEERERRRARLEALLAALGLPLPASAE--EFAA 384
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 967498756 148 EKQRLRSQARRLAQENVWLREELEETQRRLRASEEAVAQLEEEKRHLE 195
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
338-370 |
3.13e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 3.13e-04
10 20 30
....*....|....*....|....*....|...
gi 967498756 338 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 370
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
108-195 |
8.50e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 8.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 108 LEMLEEKQQVVSHSLEAIELGLGEAQ--------VLLALSAHVGALEAEKQRLRSQARRLAQENVWLREELEETQRRLRA 179
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEeeieelqkELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
90
....*....|....*.
gi 967498756 180 SEEAVAQLEEEKRHLE 195
Cdd:TIGR02168 335 LAEELAELEEKLEELK 350
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
144-232 |
3.25e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.32 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 144 ALEAEKQRLRSQARRLAQENVWLREELEETQRRLRASEEAVAQLEEEKRHLEF-LGQLRQYDPPTETQQSESPPRRDSLA 222
Cdd:PRK11448 146 ALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAqLEQLQEKAAETSQERKQKRKEITDQA 225
|
90
....*....|..
gi 967498756 223 S--LFPSEEEER 232
Cdd:PRK11448 226 AkrLELSEEETR 237
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
251-458 |
1.49e-23 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 99.70 E-value: 1.49e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEdlerssghCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 330
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALE--------LDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 331 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFEDVERHYARALSIy 410
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 967498756 411 ealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKEDLPAPL 458
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLA 180
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
267-492 |
1.70e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 95.76 E-value: 1.70e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 267 QGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDAL--QIREQTLGPEHPAVAATLNNL 344
Cdd:NF040586 405 RGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLerQRRVLGLGEDHPHTLMTAGGL 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 345 AVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKT 424
Cdd:NF040586 485 GADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLS 564
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 967498756 425 KNNLASAYLKQNKYQQAEEL-------YKEILHKEDLPAPLGTAGDTEQALRRSSSLSKIRESIRRGSEKLVSRL 492
Cdd:NF040586 565 ANNLARDLRELGRYAEALDLleealerYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRF 639
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
251-444 |
1.59e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 92.67 E-value: 1.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTL 330
Cdd:NF040586 517 PRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVL 596
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 331 -GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSI 409
Cdd:NF040586 597 gGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR 676
|
170 180 190
....*....|....*....|....*....|....*
gi 967498756 410 YEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEEL 444
Cdd:NF040586 677 YRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
267-470 |
1.32e-18 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 89.28 E-value: 1.32e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 267 QGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAV 346
Cdd:COG3914 91 LGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYLNLGE 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 347 LYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAKTKN 426
Cdd:COG3914 155 ALRRLGRLEEAIAALRRALELD--------PDNAEALNNLGNALQDLGRLEEAIAAYRRALEL--------DPDNADAHS 218
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 967498756 427 NLASAYLKQNKYQQAEELYKEILHKEDLPAPLGT------AGDTEQALRR 470
Cdd:COG3914 219 NLLFALRQACDWEVYDRFEELLAALARGPSELSPfallylPDDDPAELLA 268
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
266-492 |
2.66e-17 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 85.36 E-value: 2.66e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 266 GQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLA 345
Cdd:NF040586 490 ALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLLSANNLA 569
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 346 VLYGKRGRYREAEPLCQRALEIREKVL-GADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKT 424
Cdd:NF040586 570 RDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDTLAA 649
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 967498756 425 KNNLASAYLKQNKYQQAEELYKEILHK------EDLPAPLGTAGDTEQALRRSSSLSKIRESIRRGSEKLVSRL 492
Cdd:NF040586 650 ALSLANDLRALGDADEARELAREVLDRyrrvlgEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERL 723
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
249-449 |
3.99e-17 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 84.66 E-value: 3.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 249 EIPARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSsgHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreq 328
Cdd:COG3914 33 EAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAA--AALLLLAALLELAALLLQALGRYEEALALYRRALAL--- 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 329 tlgpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFEDVERHYARALS 408
Cdd:COG3914 108 -----NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 967498756 409 IyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:COG3914 175 L--------DPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
251-470 |
6.01e-16 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 77.74 E-value: 6.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtl 330
Cdd:COG0457 39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 331 gpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFEDVERHYARALSIY 410
Cdd:COG0457 107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 411 EALggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKEDLPAPLGTAGDTEQALRR 470
Cdd:COG0457 175 LAA----LLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
294-370 |
6.70e-16 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 72.42 E-value: 6.70e-16
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 967498756 294 DVATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREK 370
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
337-412 |
1.46e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 71.65 E-value: 1.46e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 967498756 337 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEA 412
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
251-387 |
2.56e-15 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 79.19 E-value: 2.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPD-VATMLNiLALVYRDQNKYKEATELLHDALQIREQT 329
Cdd:NF040586 602 PDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARELAREVLDRYRRV 680
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 967498756 330 LGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLA 387
Cdd:NF040586 681 LGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPYTLAAAVNLA 738
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
138-405 |
5.17e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 71.56 E-value: 5.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 138 LSAHVGALEAEKQRLRSQARRLAQENVWLREELEETQRRLRASEEAVAQLEEEKRHLEFLGQLRQYDPPTETQQSESPPR 217
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 218 RDSLASLFpseeeERKGPEAAGAAAAQQGGYEIPARLRTLHNLVIQYAGQGRYEVAVPLCRQALEdlerssghCHPDVAT 297
Cdd:COG3914 81 LELAALLL-----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALA--------LNPDFAE 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 298 MLNILALVYRDQNKYKEATELLHDALQIReqtlgPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHP 377
Cdd:COG3914 148 AYLNLGEALRRLGRLEEAIAALRRALELD-----PDNAEA---LNNLGNALQDLGRLEEAIAAYRRALEL--------DP 211
|
250 260
....*....|....*....|....*...
gi 967498756 378 DVAKQLNNLALLCQNQGKFEDVERHYAR 405
Cdd:COG3914 212 DNADAHSNLLFALRQACDWEVYDRFEEL 239
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
337-378 |
7.62e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 62.90 E-value: 7.62e-13
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 967498756 337 VAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPD 378
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
251-470 |
1.75e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.83 E-value: 1.75e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 330
Cdd:COG2956 73 PDRAEALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL----- 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 331 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIy 410
Cdd:COG2956 140 ---GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALEQ- 207
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 411 ealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKEDLPAPLGTAGDTEQALRR 470
Cdd:COG2956 208 -------DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEG 260
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
264-452 |
2.31e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 67.45 E-value: 2.31e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 264 YAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtlgpehPAVAATLNN 343
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 344 LAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAK 423
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180
....*....|....*....|....*....
gi 967498756 424 TKNNLASAYLKQNKYQQAEELYKEILHKE 452
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQD 208
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
378-449 |
2.08e-11 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 59.71 E-value: 2.08e-11
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 967498756 378 DVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERAL 72
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
301-453 |
8.17e-11 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.82 E-value: 8.17e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 301 ILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVA 380
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 967498756 381 KQLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKED 453
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLLEL--------DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGP 141
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
252-410 |
9.52e-11 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.82 E-value: 9.52e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 252 ARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlg 331
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 967498756 332 peHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEirekvLGADHPDVakqLNNLALLCQNQGKFEDVERHYARALSIY 410
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
263-469 |
1.00e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.44 E-value: 1.00e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 263 QYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQTlgpehpavAATLN 342
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDR--------AEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 343 NLAVLYGKRGRYREAEPLCQRALEIREKVLGAdhpdvakqLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVA 422
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELDPDDAEA--------LRLLAEIYEQEGDWEKAIEVLERLLKL--------GPENA 144
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 967498756 423 KTKNNLASAYLKQNKYQQAEELYKEIL--HKEDLPAPLGTA------GDTEQALR 469
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKALklDPDCARALLLLAelyleqGDYEEAIA 199
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
295-335 |
1.07e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 53.66 E-value: 1.07e-09
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 967498756 295 VATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHP 335
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
302-452 |
1.35e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 56.35 E-value: 1.35e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 302 LALVYRDQNKYKEATELLHDALQireqtlgpEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAK 381
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALE--------LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 967498756 382 QLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKE 452
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKL--------DPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
253-328 |
1.75e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.32 E-value: 1.75e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 967498756 253 RLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQ 328
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
347-452 |
7.68e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 52.87 E-value: 7.68e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 347 LYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFEDVERhYARALSIyealggphDPNVAKTKN 426
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIA-LEKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*.
gi 967498756 427 NLASAYLKQNKYQQAEELYKEILHKE 452
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELD 89
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
305-413 |
2.81e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 2.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 305 VYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYREAEPLcQRALEIrekvlgadHPDVAKQLN 384
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*....
gi 967498756 385 NLALLCQNQGKFEDVERHYARALSIYEAL 413
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALELDPSA 92
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
296-454 |
3.81e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 52.66 E-value: 3.81e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 296 ATMLNILALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgad 375
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 967498756 376 HPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKEDL 454
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
333-449 |
6.91e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 51.55 E-value: 6.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 333 EHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyea 412
Cdd:COG4235 12 ANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL--- 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 967498756 413 lggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:COG4235 81 -----DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLL 112
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
264-372 |
7.52e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 50.17 E-value: 7.52e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 264 YAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELlHDALQIreqtlgpeHPAVAATLNN 343
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 967498756 344 LAVLYGKRGRYREAEPLCQRALEIREKVL 372
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
259-446 |
9.84e-08 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 53.00 E-value: 9.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 259 NLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIReqtlgpehPAVA 338
Cdd:COG4785 36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 339 ATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPH- 417
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERAl 179
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 967498756 418 ---------DPNVAKT--KNNLASAYLKQNKYQQAEELYK 446
Cdd:COG4785 180 wlylaerklDPEKALAllLEDWATAYLLQGDTEEARELFK 219
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
336-470 |
1.32e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.96 E-value: 1.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 336 AVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyealgg 415
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 967498756 416 phDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKE-DLPAPLGTAGDTEQALRR 470
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALKLDpEHPEAYLRLARAYRALGR 121
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
292-449 |
5.58e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 52.39 E-value: 5.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 292 HPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtlgpeHPAVAATLNNLAVLYGKRGRYReAEPLCQRALEIRekv 371
Cdd:TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPR-ALEYAERALKLA--- 833
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 967498756 372 lgadhPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:TIGR02917 834 -----PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
251-409 |
1.71e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 1.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIreqtl 330
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 967498756 331 gpeHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAKQLNNLALLCQNQGKFEDVERHYARALSI 409
Cdd:COG5010 84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
302-449 |
4.30e-06 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 48.10 E-value: 4.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 302 LALVYRDQNKYKEATELLHDALQIReqtlgpehPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIrekvlgadHPDVAK 381
Cdd:TIGR02521 37 LALGYLEQGDLEVAKENLDKALEHD--------PDDYLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGD 100
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 967498756 382 QLNNL-ALLCQnQGKFEDVERHYARALSiyealgGPHDPNVAKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:TIGR02521 101 VLNNYgTFLCQ-QGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
302-450 |
5.53e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 47.60 E-value: 5.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 302 LALVYRDQNKYKEATELLHDALQIREQTLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIRekvlgadhPDVAK 381
Cdd:COG4785 37 LAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLAE 108
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 967498756 382 QLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILH 450
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLNRGIALYYLGRYELAIADLEKALE 169
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
251-367 |
2.41e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 2.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQireqtL 330
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----L 101
|
90 100 110
....*....|....*....|....*....|....*..
gi 967498756 331 GPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEI 367
Cdd:COG4783 102 DPEHPEA---YLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
251-367 |
2.78e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDLerssghchPDVATMLNILALVYRDQNKYKEATELLHDALQireqtL 330
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALA-----L 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 967498756 331 GPEHPAVaatLNNLAVLYGKRGRYREAEPLCQRALEI 367
Cdd:COG4235 81 DPDNPEA---LYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
350-451 |
3.23e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.44 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 350 KRGRYREAEPLCQRALEirekvLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYealggPHDPNVAKTKNNLA 429
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALLKLG 74
|
90 100
....*....|....*....|..
gi 967498756 430 SAYLKQNKYQQAEELYKEILHK 451
Cdd:COG1729 75 LSYLELGDYDKARATLEELIKK 96
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
338-370 |
7.51e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 39.71 E-value: 7.51e-05
10 20 30
....*....|....*....|....*....|...
gi 967498756 338 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 370
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
68-195 |
2.44e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 68 EELVRQTRQVVQGLEALRAEHRGLAGHLAEALAGQgpvtgLEMLEEKQQVVSHSLEAIELGLGEAQVLLALSAHvgALEA 147
Cdd:COG4913 312 ERLEARLDALREELDELEAQIRGNGGDRLEQLERE-----IERLERELEERERRRARLEALLAALGLPLPASAE--EFAA 384
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 967498756 148 EKQRLRSQARRLAQENVWLREELEETQRRLRASEEAVAQLEEEKRHLE 195
Cdd:COG4913 385 LRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLE 432
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
338-370 |
3.13e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.20 E-value: 3.13e-04
10 20 30
....*....|....*....|....*....|...
gi 967498756 338 AATLNNLAVLYGKRGRYREAEPLCQRALEIREK 370
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
251-406 |
3.79e-04 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 42.68 E-value: 3.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQAlEDLERSSGHCHPDVATMLnILALVYRDQNKYKEATELLHDALQIREQTL 330
Cdd:pfam17874 37 LARGLATFVLGEAYLCLGDLDAALQAMREA-EALARRADSPHVTLWALL-QQGEILRAQGRLHQALETYQQALQLARDHG 114
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 967498756 331 GPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEIREKVlgadHPDVAKQLN-NLALLCQNQGKFEDVERHYARA 406
Cdd:pfam17874 115 LQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQW----EPDAAVDAYvLLARIALAQGELEEALTLLRRA 187
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
340-375 |
4.01e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 37.90 E-value: 4.01e-04
10 20 30
....*....|....*....|....*....|....*.
gi 967498756 340 TLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGAD 375
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
362-449 |
4.15e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 40.37 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 362 QRALEIREKVlgADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQA 441
Cdd:COG4235 1 EAIARLRQAL--AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRL--------DPDNADALLDLAEALLAAGDTEEA 70
|
....*...
gi 967498756 442 EELYKEIL 449
Cdd:COG4235 71 EELLERAL 78
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
68-195 |
5.94e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 68 EELVRQTRQVVQGLEALRAEHRGLAGHLAEALAGqgpvtgLEMLEEKQQVVSHSLEAIELGLGEAQ-VLLALSAHVGALE 146
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAE------LAELEAELEELRLELEELELELEEAQaEEYELLAELARLE 301
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 967498756 147 AEKQRLRSQARRLAQENVWLREELEETQRRLRASEEAVAQLEEEKRHLE 195
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAE 350
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
306-431 |
7.46e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.20 E-value: 7.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 306 YRDQNKYKEATELLHDALQireqtLGPEHPAVAATLNNLAVLYGKRGRYREAEPLCQRALEirekvLGADHPDVAKQLNN 385
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 967498756 386 LALLCQNQGKFEDVERHYARALSIYealggPHDPNVAKTKNNLASA 431
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLARL 113
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
251-368 |
8.23e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.64 E-value: 8.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 251 PARLRTLHNLVIQYAGQGRYEVAVPLCRQALEDlerssghcHPDVATMLNILALVYRDQNKYKEATELLHDALQireqtl 330
Cdd:COG2956 175 PDCARALLLLAELYLEQGDYEEAIAALERALEQ--------DPDYLPALPRLAELYEKLGDPEEALELLRKALE------ 240
|
90 100 110
....*....|....*....|....*....|....*...
gi 967498756 331 gpEHPAVAAtLNNLAVLYGKRGRYREAEPLCQRALEIR 368
Cdd:COG2956 241 --LDPSDDL-LLALADLLERKEGLEAALALLERQLRRH 275
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
108-195 |
8.50e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 8.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 108 LEMLEEKQQVVSHSLEAIELGLGEAQ--------VLLALSAHVGALEAEKQRLRSQARRLAQENVWLREELEETQRRLRA 179
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEeeieelqkELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
|
90
....*....|....*.
gi 967498756 180 SEEAVAQLEEEKRHLE 195
Cdd:TIGR02168 335 LAEELAELEEKLEELK 350
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
379-420 |
1.17e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 36.71 E-value: 1.17e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 967498756 379 VAKQLNNLALLCQNQGKFEDVERHYARALSIYEALGGPHDPN 420
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
422-449 |
1.76e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.86 E-value: 1.76e-03
10 20
....*....|....*....|....*...
gi 967498756 422 AKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
254-294 |
1.84e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 36.33 E-value: 1.84e-03
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 967498756 254 LRTLHNLVIQYAGQGRYEVAVPLCRQALEDLERSSGHCHPD 294
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
81-195 |
2.03e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 81 LEALRAEHRGLAGHLAEAlagQGPVTGLEMLEEKQQVVSHSLEAIELGLGEAQVLLALSAHVGALEAEKQRLRSQARRLA 160
Cdd:COG4913 612 LAALEAELAELEEELAEA---EERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLA 688
|
90 100 110
....*....|....*....|....*....|....*
gi 967498756 161 QenvwLREELEETQRRLRASEEAVAQLEEEKRHLE 195
Cdd:COG4913 689 A----LEEQLEELEAELEELEEELDELKGEIGRLE 719
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
339-449 |
2.44e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 39.51 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 339 ATLNNLAVLYGKRGRYREAEPLCQRALEIREKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIyealggphD 418
Cdd:COG4785 32 AAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL--------D 103
|
90 100 110
....*....|....*....|....*....|.
gi 967498756 419 PNVAKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:COG4785 104 PDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
263-449 |
3.24e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 39.99 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 263 QYAGQGRYEVAVPLCRQALEDLERSSGHCHPDVATMLNILALVYRDQNKYKEATELLHDALQIREQtlGPEHPAVAATLN 342
Cdd:pfam17874 89 ILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQ--WEPDAAVDAYVL 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 343 nLAVLYGKRGRYREAEPLCQRALEI--REKVLGADHPDVAKQLNNLALLCQNQGKFEDVERHYARALSIYEALggphdpn 420
Cdd:pfam17874 167 -LARIALAQGELEEALTLLRRAELLarQSFFHVDWLANAERVRVRLWLARGDLRAAVRWLRAAEPPSDADNHF------- 238
|
170 180
....*....|....*....|....*....
gi 967498756 421 VAKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:pfam17874 239 LERELRNLARVLLALGRFDDALSLLERLQ 267
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
144-232 |
3.25e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 40.32 E-value: 3.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 144 ALEAEKQRLRSQARRLAQENVWLREELEETQRRLRASEEAVAQLEEEKRHLEF-LGQLRQYDPPTETQQSESPPRRDSLA 222
Cdd:PRK11448 146 ALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAqLEQLQEKAAETSQERKQKRKEITDQA 225
|
90
....*....|..
gi 967498756 223 S--LFPSEEEER 232
Cdd:PRK11448 226 AkrLELSEEETR 237
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
389-470 |
4.08e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 36.69 E-value: 4.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 389 LCQNQGKFEDVERHYARALSIyealggphDPNVAKTKNNLASAYLKQNKYQQAEELYKEILHKEDLPAPLGTAGDTEQAL 468
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLEL 72
|
..
gi 967498756 469 RR 470
Cdd:COG3063 73 GD 74
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
422-449 |
4.68e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 4.68e-03
10 20
....*....|....*....|....*...
gi 967498756 422 AKTKNNLASAYLKQNKYQQAEELYKEIL 449
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKAL 28
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
81-195 |
6.93e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.15 E-value: 6.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 81 LEALRAEHRGLAGHLAEALAGQgpvtgLEMLEEKQQVVSHSLEAIELGLGEAQVLLALSAHVGALEAEKQRLRSQARRLA 160
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAEL-----AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
90 100 110
....*....|....*....|....*....|....*
gi 967498756 161 QENVWLREELEETQRRLRASEEAVAQLEEEKRHLE 195
Cdd:COG1196 428 EALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
68-195 |
7.88e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 39.15 E-value: 7.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 967498756 68 EELVRQTRQVVQGLEALRAEHRGLAGHLAEALAGqgpvtgLEMLEEKQQVVSHSLEAIELGLGEAQVLLAlsahvgALEA 147
Cdd:COG1196 256 EELEAELAELEAELEELRLELEELELELEEAQAE------EYELLAELARLEQDIARLEERRRELEERLE------ELEE 323
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 967498756 148 EKQRLRSQARRLAQENVWLREELEETQRRLRASEEAVAQLEEEKRHLE 195
Cdd:COG1196 324 ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
|
| |
