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Conserved domains on  [gi|1622877756|ref|XP_014974136|]
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TBC1 domain family member 26 isoform X2 [Macaca mulatta]

Protein Classification

TBC domain-containing protein( domain architecture ID 771)

TBC (Tre-2, BUB2p, Cdc16p) domain-containing protein may perform a GTP-activator activity on Rab-like GTPases

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TBC super family cl47029
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
 98-182 5.72e-15

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


The actual alignment was detected with superfamily member smart00164:

Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 70.41  E-value: 5.72e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622877756   98 VYKGIPLAVRGQAWSLLLDI-NKVKSQNPGKYKVMKEKGKRSSR-IIHRIQLDVNSTLQNHMMFIQRCGVKQQELCDILV 175
Cdd:smart00164   1 VRKGVPPSLRGVVWKLLLNAqPMDTSADKDLYSRLLKETAPDDKsIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80


                   ....*..
gi 1622877756  176 AYSAYNP 182
Cdd:smart00164  81 AYALYNP 87
 
Name Accession Description Interval E-value
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
 98-182 5.72e-15

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 70.41  E-value: 5.72e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622877756   98 VYKGIPLAVRGQAWSLLLDI-NKVKSQNPGKYKVMKEKGKRSSR-IIHRIQLDVNSTLQNHMMFIQRCGVKQQELCDILV 175
Cdd:smart00164   1 VRKGVPPSLRGVVWKLLLNAqPMDTSADKDLYSRLLKETAPDDKsIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80


                   ....*..
gi 1622877756  176 AYSAYNP 182
Cdd:smart00164  81 AYALYNP 87
COG5210 COG5210
GTPase-activating protein [General function prediction only];
63-184 4.68e-12

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 64.05  E-value: 4.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622877756  63 LEVKQRRKESKRTNKWLKMFAEWPKYR---NTKKLSQRVYKGIPLAVRGQAWSLLLDINKVKSQNPGKYKV----MKEKG 135
Cdd:COG5210   171 EPQKLRYYELAADKLWISYLDPNPLSFlpvQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERllnlHREAK 250

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1622877756 136 KRSSRIIHRIQLDVNSTLQNHMMFIQRCGVKQQELCDILVAYSAYNPVS 184
Cdd:COG5210   251 IPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEV 299
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
 143-182 1.14e-03

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 38.39  E-value: 1.14e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1622877756 143 HRIQLDVNSTLQNHMMFIQRCGvkQQELCDILVAYSAYNP 182
Cdd:pfam00566  10 EQIEKDVPRTFPHSFFFDNGPG--QNSLRRILKAYSIYNP 47
 
Name Accession Description Interval E-value
TBC smart00164
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ...
 98-182 5.72e-15

Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.


Pssm-ID: 214540 [Multi-domain]  Cd Length: 216  Bit Score: 70.41  E-value: 5.72e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622877756   98 VYKGIPLAVRGQAWSLLLDI-NKVKSQNPGKYKVMKEKGKRSSR-IIHRIQLDVNSTLQNHMMFIQRCGVKQQELCDILV 175
Cdd:smart00164   1 VRKGVPPSLRGVVWKLLLNAqPMDTSADKDLYSRLLKETAPDDKsIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80


                   ....*..
gi 1622877756  176 AYSAYNP 182
Cdd:smart00164  81 AYALYNP 87
COG5210 COG5210
GTPase-activating protein [General function prediction only];
63-184 4.68e-12

GTPase-activating protein [General function prediction only];


Pssm-ID: 227535 [Multi-domain]  Cd Length: 496  Bit Score: 64.05  E-value: 4.68e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622877756  63 LEVKQRRKESKRTNKWLKMFAEWPKYR---NTKKLSQRVYKGIPLAVRGQAWSLLLDINKVKSQNPGKYKV----MKEKG 135
Cdd:COG5210   171 EPQKLRYYELAADKLWISYLDPNPLSFlpvQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERllnlHREAK 250

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1622877756 136 KRSSRIIHRIQLDVNSTLQNHMMFIQRCGVKQQELCDILVAYSAYNPVS 184
Cdd:COG5210   251 IPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEV 299
RabGAP-TBC pfam00566
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ...
 143-182 1.14e-03

Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.


Pssm-ID: 459855  Cd Length: 178  Bit Score: 38.39  E-value: 1.14e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1622877756 143 HRIQLDVNSTLQNHMMFIQRCGvkQQELCDILVAYSAYNP 182
Cdd:pfam00566  10 EQIEKDVPRTFPHSFFFDNGPG--QNSLRRILKAYSIYNP 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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