|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-793 |
1.96e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 1.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 166 LQVKDARIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKECVQNKEEQNRLI---IKN 242
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 243 LEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDM 322
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 323 DITLVRKELQ----ELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKV-----------LRNQEDVHTAESISYQKLYNEL 387
Cdd:TIGR02168 394 QIASLNNEIErleaRLERLEDRRERLQQEIEELLKKLEEAELKELQAeleeleeeleeLQEELERLEEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 388 HTCFETTKSNEAMLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAPH---PLSQ--ESDPDYSAQV-------------- 448
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgVLSEliSVDEGYEAAIeaalggrlqavvve 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 449 -----------------------------PYRPSLSSLETLM-----VSQKSEIEYLQEKLKIANEKLSenippSKVFSE 494
Cdd:TIGR02168 554 nlnaakkaiaflkqnelgrvtflpldsikGTEIQGNDREILKniegfLGVAKDLVKFDPKLRKALSYLL-----GGVLVV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 495 KSIMTSAEGKHKEPP-----------VKRSRSLSPKSSFTDS---------EELR-KLRKAERKIENLEKALQLKSQEND 553
Cdd:TIGR02168 629 DDLDNALELAKKLRPgyrivtldgdlVRPGGVITGGSAKTNSsilerrreiEELEeKIEELEEKIAELEKALAELRKELE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 554 ELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEigkiKRADPQKLRQEDCDAVWNELAYFKRENQELMI----QK 629
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE----ERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 630 MNLEEELDELKVHISIDKEAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKngKEMLEQTLQKVIELENRLKSFEKRSR 709
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT--ERRLEDLEEQIEELSEDIESLAAEIE 862
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 710 KLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELEREVTFLKRQVAEANALRNENE 789
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
....
gi 1622872516 790 ELIN 793
Cdd:TIGR02168 943 ERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-748 |
2.47e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 154 KSEGKDRKVLEIL---QVKDARIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKECVQ 230
Cdd:COG1196 219 KEELKELEAELLLlklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 231 NKEEQ---NRLIIKNLEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNALS 307
Cdd:COG1196 299 RLEQDiarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 308 LQLSNKQTELIQKDMDITLVRKELQELQnlyKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLynel 387
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELE---EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---- 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 388 htcfETTKSNEAMLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAPHPLSQ--ESDPDYSAQVPyRPSLSSLETLMVSQK 465
Cdd:COG1196 452 ----AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaeADYEGFLEGVK-AALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 466 SEIEYLQEKLKIANEKLSENIPPSKVFSEKSIMTSAEGKHKE-----------PPVKRSRSLSPKSSFTDSEELRKLRKA 534
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagratflplDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 535 ERKIENL-EKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIGKIKRADPQKLRQEDCDAVWN 613
Cdd:COG1196 607 DLREADArYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 614 ELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTlqk 693
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE--- 763
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622872516 694 viELENRLKSFEKRSRKLKEGN-------KKLMKENDFLKSllkqQQEDTETREKELEQIIK 748
Cdd:COG1196 764 --ELERELERLEREIEALGPVNllaieeyEELEERYDFLSE----QREDLEEARETLEEAIE 819
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
149-804 |
3.83e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 3.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 149 EREKQKSEgKDRKVLEILQVKDARIQEFEQRESVLKQEindlvKRKIAVDEENAFLRKEFSELEkkfkdKSQEIKDTKEC 228
Cdd:PTZ00121 1239 AEEAKKAE-EERNNEEIRKFEEARMAHFARRQAAIKAE-----EARKADELKKAEEKKKADEAK-----KAEEKKKADEA 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 229 VQNKEEQNRLiiknleeenNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNAlsl 308
Cdd:PTZ00121 1308 KKKAEEAKKA---------DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE--- 1375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 309 qlSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESisyQKLYNELH 388
Cdd:PTZ00121 1376 --AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE---AKKADEAK 1450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 389 TCFETTKSNEAMLRQSVVNLQDQLLQKEQENAK----LKEKLQESQGAPHPLSQESDPDYSAQvpyrpslssletlmVSQ 464
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKkadeAKKKAEEAKKKADEAKKAAEAKKKAD--------------EAK 1516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 465 KSEIEYLQEKLKIANEKlsenippskvfseksimTSAEGKHKEPPVKRSRSLSPKSSFTDSEELRKLRKAERKIENLEKA 544
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEA-----------------KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 545 LqlksQENDELRDAHEKRKERLQMLQTNYRAVK-EQLKQWEEGSGMTEigKIKRADPQKLRQEDCDAVWNELayfKRENQ 623
Cdd:PTZ00121 1580 L----RKAEEAKKAEEARIEEVMKLYEEEKKMKaEEAKKAEEAKIKAE--ELKKAEEEKKKVEQLKKKEAEE---KKKAE 1650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 624 ELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERR--EEQLFRSGED----DEVKRSTPE--KNGKEMLEQTLQKVI 695
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKkaAEALKKEAEEakkaEELKKKEAEekKKAEELKKAEEENKI 1730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 696 ELENRLKSFEKRSRKLKEGnKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELqvkisELEREVTFLK 775
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEA-KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM-----EVDKKIKDIF 1804
|
650 660
....*....|....*....|....*....
gi 1622872516 776 RQVAEANALRNENEELINPMEKSHQSADK 804
Cdd:PTZ00121 1805 DNFANIIEGGKEGNLVINDSKEMEDSAIK 1833
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
532-1305 |
9.33e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 9.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 532 RKAERKIENLEKALqlksqenDELRDAHEKRKERLQMLQ------TNYRAVKEQLKQWEEGSgmtEIGKIKRADPQKLRQ 605
Cdd:TIGR02168 175 KETERKLERTRENL-------DRLEDILNELERQLKSLErqaekaERYKELKAELRELELAL---LVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 606 EdcdavwNELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQE-------LNRCVAERREEQLFRSGEDDEVKRST 678
Cdd:TIGR02168 245 Q------EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqkelyaLANEISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 679 PEKNgkEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENT 758
Cdd:TIGR02168 319 EELE--AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 759 ELQVKISELEREVTFLKRQVAEANALRNENEELINPMEKSHQSADKAKSETATTKVRSGRYDCKTTMTKVKFKAAKKNC- 837
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQa 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 838 --SVGRHHTVLNHSIKVMSNVFENLSKDG-----WEDVSESSSDSEAQTSQ------------------TLGTIIVETSQ 892
Cdd:TIGR02168 477 ldAAERELAQLQARLDSLERLQENLEGFSegvkaLLKNQSGLSGILGVLSElisvdegyeaaieaalggRLQAVVVENLN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 893 K-------ISPTEDGK---------DQKESDPTEDSQTKGKEIVQTYLNIDGKTPTDYfhdKNAKKPTFQkkNYKMQKSS 956
Cdd:TIGR02168 557 AakkaiafLKQNELGRvtflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL---RKALSYLLG--GVLVVDDL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 957 HTAVPTRV-NREKYKNITAQ--------------KSSSNVILLRERIIS-LQQQNSVLQNAKKTAELSVKEYKEVNEKLL 1020
Cdd:TIGR02168 632 DNALELAKkLRPGYRIVTLDgdlvrpggvitggsAKTNSSILERRREIEeLEEKIEELEEKIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1021 HQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSSEITSLAEEVSQVTFPRIQVTSLGPSRSMDlEMKQLQCK 1100
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA-EIEELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1101 LKNATNELTKQSSNVKSLKFELLAKEEHIKEMHEKMSRMERDITMKRHLIEDLKFRQKVNLESNESFSEMLQNLDKKVKT 1180
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1181 LTEECSNKKISIDSLKQRLNVAVKEksqyeqmYQKSKEELEKKDLKLTLLVSRISETESAMADIETAASKQLQGLALQSE 1260
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSE-------LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1622872516 1261 QVLEGAQKTLllanEKVEEFTKFVKALAKELQNDVHVVRRQIREL 1305
Cdd:TIGR02168 944 RLSEEYSLTL----EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
480-1357 |
1.55e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 480 EKLSENIPPSKVFSEKSIMT-SAEGKH-----KEPPVKRSRSLSPKSSFTDSEELRKLRKAERKIENLEKALQLKSQEND 553
Cdd:PTZ00121 1030 EELTEYGNNDDVLKEKDIIDeDIDGNHegkaeAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETG 1109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 554 ELRDAhEKRKERLQMLQTNYRAvkEQLKQWEEGSGMTEIGKIKRADPQKLRQEDCDAVWNELAYFKRENQELmiqkmnlE 633
Cdd:PTZ00121 1110 KAEEA-RKAEEAKKKAEDARKA--EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA-------E 1179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 634 EELDELKVHISIDKEAIQELNRCVAERREEQLFRSgedDEVKRSTPEKNGKEMLEQTLQKVIELENRLKSFEKRSRKLKE 713
Cdd:PTZ00121 1180 AARKAEEVRKAEELRKAEDARKAEAARKAEEERKA---EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 714 GNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGS---KDVEKENTELQVKISELEREVTFLKRQVAE----ANALRN 786
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADeakKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkkADAAKK 1336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 787 ENEELINPMEKSHQSADKAKSETATTKVRSGRYDCKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWE 866
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 867 DVSESSSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTEDSQTKGKEIVQTYlNIDGKTPTDYFHDKNAKKPTFQ 946
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD-EAKKKAEEAKKADEAKKKAEEA 1495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 947 KKN----YKMQKSSHTAVPTRVNREKYKNITAQKSSSNVILLRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQ 1022
Cdd:PTZ00121 1496 KKKadeaKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1023 QQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDL-LKKLESSSEITSLAEEVSQVTFPRIQVTSLgpsrsmdlemKQLQCKL 1101
Cdd:PTZ00121 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkAEEAKKAEEAKIKAEELKKAEEEKKKVEQL----------KKKEAEE 1645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1102 KNATNELTKQSSNVKSLKFELLAKEEHIKEMHEKMSRMERDitmKRHLIEDLKfRQKVNLESNESFSEMLQNLDKKVKTL 1181
Cdd:PTZ00121 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED---EKKAAEALK-KEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1182 TEECSNKKISIDSLKQRlnvAVKEKSQYEQM---------YQKSKEELEKKDLKLTLLVSRISETESAMADIE--TAASK 1250
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKE---AEEDKKKAEEAkkdeeekkkIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKrrMEVDK 1798
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1251 QLQGLALQSEQVLEGAQKTLLLANEKVEEFTKFVKalakELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASIL 1330
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIK----EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK 1874
|
890 900
....*....|....*....|....*..
gi 1622872516 1331 NISRSDLEEILDTEDEVEIEKTKIDAE 1357
Cdd:PTZ00121 1875 DLKEDDEEEIEEADEIEKIDKDDIERE 1901
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
148-768 |
1.15e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 148 VEREKQKSEGKDRKVLEILQVKDariQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKE 227
Cdd:pfam02463 195 LKLQELKLKEQAKKALEYYQLKE---KLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 228 CVQNKEEQnrlIIKNLEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVE---------- 297
Cdd:pfam02463 272 KENKEEEK---EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEelekelkele 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 298 -VSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVLN------MDTQKVLRNQE 370
Cdd:pfam02463 349 iKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLelarqlEDLLKEEKKEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 371 DVHTAESisyQKLYNELHTCFETTKSNEAMLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAPHPLSQESDPDYSAQVPY 450
Cdd:pfam02463 429 LEILEEE---EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKA 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 451 RPSLSSLETLMVSQKS----EIEYLQEKLKIANEKLSENIPPSKVFSEKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSE 526
Cdd:pfam02463 506 RSGLKVLLALIKDGVGgriiSAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIP 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 527 ELRKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIGKIKRADPQKLRQE 606
Cdd:pfam02463 586 KLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVK 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 607 DCDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERRE-EQLFRSGEDDEVKRSTPEKNGKE 685
Cdd:pfam02463 666 ASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEElLADRVQEAQDKINEELKLLKQKI 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 686 MLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKIS 765
Cdd:pfam02463 746 DEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIE 825
|
...
gi 1622872516 766 ELE 768
Cdd:pfam02463 826 QEE 828
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
984-1273 |
2.40e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 984 LRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLaglrKEKEDLLK--KLESS 1061
Cdd:pfam10174 420 LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL----KEKVSALQpeLTEKE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1062 SEITSLAEEVSQVTFPRIQVTSLGPSRSMDLEMK-----QLQCKLKNATN-ELTKQSSNVKSLKFELLAKE--EHIKEMH 1133
Cdd:pfam10174 496 SSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKkeecsKLENQLKKAHNaEEAVRTNPEINDRIRLLEQEvaRYKEESG 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1134 EKMSRMER--DITMKRHLIEDLKFRQKVNLESNESFSEMLQNLD-KKVKTLTEECSNKKISIDSLKQRLNVAVKEKSQYE 1210
Cdd:pfam10174 576 KAQAEVERllGILREVENEKNDKDKKIAELESLTLRQMKEQNKKvANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQL 655
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622872516 1211 QMyQKSKEELEKKDLKLTLLVSRISETESAMADIETAASKQLQGLALQSEQVLEGAQKTLLLA 1273
Cdd:pfam10174 656 QL-EELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAA 717
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1093-1348 |
4.84e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1093 EMKQLQCKLKNATNELTKQSSNVKSLKFELLAKEEHIKEMHE-------KMSRMERDITMKRHLIEDLKFRQKVNLESNE 1165
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyellaELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1166 SFSEMLQNLDKKVKTLTEECSNKKISIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMADIE 1245
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1246 TAAsKQLQGLALQSEQVLEGAQKTLLLANEKVEEFTKFVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTL 1325
Cdd:COG1196 407 EAE-EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
250 260
....*....|....*....|...
gi 1622872516 1326 AASILNISRSDLEEILDTEDEVE 1348
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLE 508
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
166-793 |
1.96e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.49 E-value: 1.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 166 LQVKDARIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKECVQNKEEQNRLI---IKN 242
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILrerLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 243 LEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDM 322
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 323 DITLVRKELQ----ELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKV-----------LRNQEDVHTAESISYQKLYNEL 387
Cdd:TIGR02168 394 QIASLNNEIErleaRLERLEDRRERLQQEIEELLKKLEEAELKELQAeleeleeeleeLQEELERLEEALEELREELEEA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 388 HTCFETTKSNEAMLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAPH---PLSQ--ESDPDYSAQV-------------- 448
Cdd:TIGR02168 474 EQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgVLSEliSVDEGYEAAIeaalggrlqavvve 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 449 -----------------------------PYRPSLSSLETLM-----VSQKSEIEYLQEKLKIANEKLSenippSKVFSE 494
Cdd:TIGR02168 554 nlnaakkaiaflkqnelgrvtflpldsikGTEIQGNDREILKniegfLGVAKDLVKFDPKLRKALSYLL-----GGVLVV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 495 KSIMTSAEGKHKEPP-----------VKRSRSLSPKSSFTDS---------EELR-KLRKAERKIENLEKALQLKSQEND 553
Cdd:TIGR02168 629 DDLDNALELAKKLRPgyrivtldgdlVRPGGVITGGSAKTNSsilerrreiEELEeKIEELEEKIAELEKALAELRKELE 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 554 ELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEigkiKRADPQKLRQEDCDAVWNELAYFKRENQELMI----QK 629
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE----ERIAQLSKELTELEAEIEELEERLEEAEEELAeaeaEI 784
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 630 MNLEEELDELKVHISIDKEAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKngKEMLEQTLQKVIELENRLKSFEKRSR 709
Cdd:TIGR02168 785 EELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAAT--ERRLEDLEEQIEELSEDIESLAAEIE 862
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 710 KLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELEREVTFLKRQVAEANALRNENE 789
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
....
gi 1622872516 790 ELIN 793
Cdd:TIGR02168 943 ERLS 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
149-791 |
8.34e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 8.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 149 EREKQKSEGKDRKVLEILQVKDARIQEFEQresvlkqEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKEC 228
Cdd:TIGR02169 314 ERELEDAEERLAKLEAEIDKLLAEIEELER-------EIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 229 VQNKEEQnrliIKNLEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNALSL 308
Cdd:TIGR02169 387 LKDYREK----LEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 309 QLSNKQTELIQKDMDITLVRKELQELQNLYKQNSThtaqQAELIQQLQVLNMDTQKVLR-NQEDVH--TAESISYQKLYn 385
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKaSIQGVHgtVAQLGSVGERY- 537
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 386 elHTCFETTKSNEamlrqsvvnLQDQLLQKEQENAKLKEKLQESQGAPH---PLSQESDPDYSAQVPYRPSLSSLETLMV 462
Cdd:TIGR02169 538 --ATAIEVAAGNR---------LNNVVVEDDAVAKEAIELLKRRKAGRAtflPLNKMRDERRDLSILSEDGVIGFAVDLV 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 463 SQKSEIEYLQeKLKIANEKLSENIPPSKVFSEKSIMTSAEGKHKEPP---VKRSRSLSPKSSFT--DSEELRKLRKAERK 537
Cdd:TIGR02169 607 EFDPKYEPAF-KYVFGDTLVVEDIEAARRLMGKYRMVTLEGELFEKSgamTGGSRAPRGGILFSrsEPAELQRLRERLEG 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 538 IENLEKALQ--LKSQEN------DELRDAHEKRKE---RLQMLQTNYRAVKEQLKQweegsgmteigkiKRADPQKLRQE 606
Cdd:TIGR02169 686 LKRELSSLQseLRRIENrldelsQELSDASRKIGEiekEIEQLEQEEEKLKERLEE-------------LEEDLSSLEQE 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 607 dCDAVWNELAYFKRENQELMIQKMNLEEELDELKVHI--SIDKEAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGK 684
Cdd:TIGR02169 753 -IENVKSELKELEARIEELEEDLHKLEEALNDLEARLshSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 685 EMLEQTLQ-KVIELENRLKSFEKRsrkLKEGNKKLMKendfLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVK 763
Cdd:TIGR02169 832 EKEIQELQeQRIDLKEQIKSIEKE---IENLNGKKEE----LEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904
|
650 660
....*....|....*....|....*....
gi 1622872516 764 ISELEREVTFLKRQVAEANA-LRNENEEL 791
Cdd:TIGR02169 905 IEELEAQIEKKRKRLSELKAkLEALEEEL 933
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
154-748 |
2.47e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 2.47e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 154 KSEGKDRKVLEIL---QVKDARIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKECVQ 230
Cdd:COG1196 219 KEELKELEAELLLlklRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 231 NKEEQ---NRLIIKNLEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNALS 307
Cdd:COG1196 299 RLEQDiarLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 308 LQLSNKQTELIQKDMDITLVRKELQELQnlyKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLynel 387
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELE---EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEE---- 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 388 htcfETTKSNEAMLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAPHPLSQ--ESDPDYSAQVPyRPSLSSLETLMVSQK 465
Cdd:COG1196 452 ----AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEaeADYEGFLEGVK-AALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 466 SEIEYLQEKLKIANEKLSENIPPSKVFSEKSIMTSAEGKHKE-----------PPVKRSRSLSPKSSFTDSEELRKLRKA 534
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagratflplDKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 535 ERKIENL-EKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIGKIKRADPQKLRQEDCDAVWN 613
Cdd:COG1196 607 DLREADArYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 614 ELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTlqk 693
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE--- 763
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622872516 694 viELENRLKSFEKRSRKLKEGN-------KKLMKENDFLKSllkqQQEDTETREKELEQIIK 748
Cdd:COG1196 764 --ELERELERLEREIEALGPVNllaieeyEELEERYDFLSE----QREDLEEARETLEEAIE 819
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
241-808 |
1.88e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.30 E-value: 1.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 241 KNLEEENNKLsTRCTDLLNDLEK-----------------LRKQEAHWRKEKYSTDakIKAFEDNLIEARKEVEVSQSKY 303
Cdd:TIGR02168 179 RKLERTRENL-DRLEDILNELERqlkslerqaekaerykeLKAELRELELALLVLR--LEELREELEELQEELKEAEEEL 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 304 NALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQnstHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKL 383
Cdd:TIGR02168 256 EELTAELQELEEKLEELRLEVSELEEEIEELQKELYA---LANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 384 ynelhtcfETTKSNEAMLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAPHPLSQESDPdysaqvpYRPSLSSLETLMVS 463
Cdd:TIGR02168 333 --------DELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET-------LRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 464 QKSEIEYLQEKLKIANEKLSENippskvfseKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELRKLRKAERKIENLEK 543
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERL---------QQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 544 ALQLKSQENDELRDAHEKRKERLQMLQT-------NYRAVKEQLKQWEEGSGM---------------TEIGKIKRADPQ 601
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQARLDSLERlqenlegFSEGVKALLKNQSGLSGIlgvlselisvdegyeAAIEAALGGRLQ 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 602 KLRQEDCDAVWNELAYFKRENQ------------------ELMIQKMNLEEELDELKVHISIDKEA-------------- 649
Cdd:TIGR02168 549 AVVVENLNAAKKAIAFLKQNELgrvtflpldsikgteiqgNDREILKNIEGFLGVAKDLVKFDPKLrkalsyllggvlvv 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 650 --IQELNRCVAERREEQLF-------------RSGEDDEVKRSTPE-----KNGKEMLEQTLQKVIELENRLKSFEKRSR 709
Cdd:TIGR02168 629 ddLDNALELAKKLRPGYRIvtldgdlvrpggvITGGSAKTNSSILErrreiEELEEKIEELEEKIAELEKALAELRKELE 708
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 710 KLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKISELEREVTFLKRQVAEANALRNENE 789
Cdd:TIGR02168 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE 788
|
650
....*....|....*....
gi 1622872516 790 ELINPMEKSHQSADKAKSE 808
Cdd:TIGR02168 789 AQIEQLKEELKALREALDE 807
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
149-804 |
3.83e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 3.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 149 EREKQKSEgKDRKVLEILQVKDARIQEFEQRESVLKQEindlvKRKIAVDEENAFLRKEFSELEkkfkdKSQEIKDTKEC 228
Cdd:PTZ00121 1239 AEEAKKAE-EERNNEEIRKFEEARMAHFARRQAAIKAE-----EARKADELKKAEEKKKADEAK-----KAEEKKKADEA 1307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 229 VQNKEEQNRLiiknleeenNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNAlsl 308
Cdd:PTZ00121 1308 KKKAEEAKKA---------DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE--- 1375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 309 qlSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDVHTAESisyQKLYNELH 388
Cdd:PTZ00121 1376 --AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEE---AKKADEAK 1450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 389 TCFETTKSNEAMLRQSVVNLQDQLLQKEQENAK----LKEKLQESQGAPHPLSQESDPDYSAQvpyrpslssletlmVSQ 464
Cdd:PTZ00121 1451 KKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKkadeAKKKAEEAKKKADEAKKAAEAKKKAD--------------EAK 1516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 465 KSEIEYLQEKLKIANEKlsenippskvfseksimTSAEGKHKEPPVKRSRSLSPKSSFTDSEELRKLRKAERKIENLEKA 544
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEA-----------------KKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMA 1579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 545 LqlksQENDELRDAHEKRKERLQMLQTNYRAVK-EQLKQWEEGSGMTEigKIKRADPQKLRQEDCDAVWNELayfKRENQ 623
Cdd:PTZ00121 1580 L----RKAEEAKKAEEARIEEVMKLYEEEKKMKaEEAKKAEEAKIKAE--ELKKAEEEKKKVEQLKKKEAEE---KKKAE 1650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 624 ELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERR--EEQLFRSGED----DEVKRSTPE--KNGKEMLEQTLQKVI 695
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKkaAEALKKEAEEakkaEELKKKEAEekKKAEELKKAEEENKI 1730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 696 ELENRLKSFEKRSRKLKEGnKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELqvkisELEREVTFLK 775
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEA-KKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRM-----EVDKKIKDIF 1804
|
650 660
....*....|....*....|....*....
gi 1622872516 776 RQVAEANALRNENEELINPMEKSHQSADK 804
Cdd:PTZ00121 1805 DNFANIIEGGKEGNLVINDSKEMEDSAIK 1833
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
532-1305 |
9.33e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.52 E-value: 9.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 532 RKAERKIENLEKALqlksqenDELRDAHEKRKERLQMLQ------TNYRAVKEQLKQWEEGSgmtEIGKIKRADPQKLRQ 605
Cdd:TIGR02168 175 KETERKLERTRENL-------DRLEDILNELERQLKSLErqaekaERYKELKAELRELELAL---LVLRLEELREELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 606 EdcdavwNELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQE-------LNRCVAERREEQLFRSGEDDEVKRST 678
Cdd:TIGR02168 245 Q------EELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEElqkelyaLANEISRLEQQKQILRERLANLERQL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 679 PEKNgkEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENT 758
Cdd:TIGR02168 319 EELE--AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 759 ELQVKISELEREVTFLKRQVAEANALRNENEELINPMEKSHQSADKAKSETATTKVRSGRYDCKTTMTKVKFKAAKKNC- 837
Cdd:TIGR02168 397 SLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQa 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 838 --SVGRHHTVLNHSIKVMSNVFENLSKDG-----WEDVSESSSDSEAQTSQ------------------TLGTIIVETSQ 892
Cdd:TIGR02168 477 ldAAERELAQLQARLDSLERLQENLEGFSegvkaLLKNQSGLSGILGVLSElisvdegyeaaieaalggRLQAVVVENLN 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 893 K-------ISPTEDGK---------DQKESDPTEDSQTKGKEIVQTYLNIDGKTPTDYfhdKNAKKPTFQkkNYKMQKSS 956
Cdd:TIGR02168 557 AakkaiafLKQNELGRvtflpldsiKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKL---RKALSYLLG--GVLVVDDL 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 957 HTAVPTRV-NREKYKNITAQ--------------KSSSNVILLRERIIS-LQQQNSVLQNAKKTAELSVKEYKEVNEKLL 1020
Cdd:TIGR02168 632 DNALELAKkLRPGYRIVTLDgdlvrpggvitggsAKTNSSILERRREIEeLEEKIEELEEKIAELEKALAELRKELEELE 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1021 HQQQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDLLKKLESSSEITSLAEEVSQVTFPRIQVTSLGPSRSMDlEMKQLQCK 1100
Cdd:TIGR02168 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEA-EIEELEAQ 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1101 LKNATNELTKQSSNVKSLKFELLAKEEHIKEMHEKMSRMERDITMKRHLIEDLKFRQKVNLESNESFSEMLQNLDKKVKT 1180
Cdd:TIGR02168 791 IEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEE 870
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1181 LTEECSNKKISIDSLKQRLNVAVKEksqyeqmYQKSKEELEKKDLKLTLLVSRISETESAMADIETAASKQLQGLALQSE 1260
Cdd:TIGR02168 871 LESELEALLNERASLEEALALLRSE-------LEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1622872516 1261 QVLEGAQKTLllanEKVEEFTKFVKALAKELQNDVHVVRRQIREL 1305
Cdd:TIGR02168 944 RLSEEYSLTL----EEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
525-790 |
1.06e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 1.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 525 SEELRKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMT----------EIGK 594
Cdd:TIGR02169 226 YELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigeleaEIAS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 595 IKRADPQKLRQ------------EDCDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERRE 662
Cdd:TIGR02169 306 LERSIAEKEREledaeerlakleAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 663 EQLFRSGEDDEVKRStpekngKEMLEQTLQKVIELENRLKSfekRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKE 742
Cdd:TIGR02169 386 ELKDYREKLEKLKRE------INELKRELDRLQEELQRLSE---ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1622872516 743 LEQIIKGSKDVEKENTELQVKISELEREVTFLKRQVAEANALRNENEE 790
Cdd:TIGR02169 457 LEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEE 504
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
526-808 |
1.20e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 526 EELRKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEgsgmteigkikradpqklrq 605
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQ-------------------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 606 edcdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERREEQlfrsgeddevkrstpeKNGKE 685
Cdd:COG1196 303 --------DIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL----------------EEAEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 686 MLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKIS 765
Cdd:COG1196 359 ELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 1622872516 766 ELEREVTFLKRQVAEANALRNENEELINPMEKSHQSADKAKSE 808
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
178-793 |
3.30e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 3.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 178 QRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKECVQNKEEQNRLIIKNLEEENNKLSTRCTDL 257
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 258 LNDLEKLRKQEAHWRKEKySTDAKIKAFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNL 337
Cdd:TIGR04523 197 LKLELLLSNLKKKIQKNK-SLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKE 275
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 338 YKQNSTHTAQQAELIQQL--QVLNMDTQKVLRNQEDVHTaESISYQKLYNELHTCFETTKSNEAMLRQSVVNLQDQLLQK 415
Cdd:TIGR04523 276 LEQNNKKIKELEKQLNQLksEISDLNNQKEQDWNKELKS-ELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNS 354
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 416 EQENAKLKEKLQESQGAPHPLSQESDpdysaqvPYRPSLSSLEtlmvSQKSEIEYLQEKLKIANEKLSENIppskvfseK 495
Cdd:TIGR04523 355 ESENSEKQRELEEKQNEIEKLKKENQ-------SYKQEIKNLE----SQINDLESKIQNQEKLNQQKDEQI--------K 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 496 SIMTSAEGKHKEppvkrsrslspkssftdSEELRKLR-KAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYR 574
Cdd:TIGR04523 416 KLQQEKELLEKE-----------------IERLKETIiKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN 478
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 575 AVKEQLKQWEEgsgmteigkikradpqklrqedcdavwnELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELN 654
Cdd:TIGR04523 479 KIKQNLEQKQK----------------------------ELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLE 530
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 655 RCVAERREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQE 734
Cdd:TIGR04523 531 SEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEK 610
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622872516 735 DTETREKELEQIIKGSKDVEKENTELQVKISELEREVTFLKRQVAEANALRNENEELIN 793
Cdd:TIGR04523 611 KISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIK 669
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
480-1357 |
1.55e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.75 E-value: 1.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 480 EKLSENIPPSKVFSEKSIMT-SAEGKH-----KEPPVKRSRSLSPKSSFTDSEELRKLRKAERKIENLEKALQLKSQEND 553
Cdd:PTZ00121 1030 EELTEYGNNDDVLKEKDIIDeDIDGNHegkaeAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETG 1109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 554 ELRDAhEKRKERLQMLQTNYRAvkEQLKQWEEGSGMTEIGKIKRADPQKLRQEDCDAVWNELAYFKRENQELmiqkmnlE 633
Cdd:PTZ00121 1110 KAEEA-RKAEEAKKKAEDARKA--EEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA-------E 1179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 634 EELDELKVHISIDKEAIQELNRCVAERREEQLFRSgedDEVKRSTPEKNGKEMLEQTLQKVIELENRLKSFEKRSRKLKE 713
Cdd:PTZ00121 1180 AARKAEEVRKAEELRKAEDARKAEAARKAEEERKA---EEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRK 1256
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 714 GNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGS---KDVEKENTELQVKISELEREVTFLKRQVAE----ANALRN 786
Cdd:PTZ00121 1257 FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADeakKAEEKKKADEAKKKAEEAKKADEAKKKAEEakkkADAAKK 1336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 787 ENEELINPMEKSHQSADKAKSETATTKVRSGRYDCKTTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWE 866
Cdd:PTZ00121 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA 1416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 867 DVSESSSDSEAQTSQTLGTIIVETSQKISPTEDGKDQKESDPTEDSQTKGKEIVQTYlNIDGKTPTDYFHDKNAKKPTFQ 946
Cdd:PTZ00121 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD-EAKKKAEEAKKADEAKKKAEEA 1495
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 947 KKN----YKMQKSSHTAVPTRVNREKYKNITAQKSSSNVILLRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQ 1022
Cdd:PTZ00121 1496 KKKadeaKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1023 QQVSDQRFQTSRQTIKKLNLDLAGLRKEKEDL-LKKLESSSEITSLAEEVSQVTFPRIQVTSLgpsrsmdlemKQLQCKL 1101
Cdd:PTZ00121 1576 KNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkAEEAKKAEEAKIKAEELKKAEEEKKKVEQL----------KKKEAEE 1645
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1102 KNATNELTKQSSNVKSLKFELLAKEEHIKEMHEKMSRMERDitmKRHLIEDLKfRQKVNLESNESFSEMLQNLDKKVKTL 1181
Cdd:PTZ00121 1646 KKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED---EKKAAEALK-KEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1182 TEECSNKKISIDSLKQRlnvAVKEKSQYEQM---------YQKSKEELEKKDLKLTLLVSRISETESAMADIE--TAASK 1250
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKE---AEEDKKKAEEAkkdeeekkkIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKrrMEVDK 1798
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1251 QLQGLALQSEQVLEGAQKTLLLANEKVEEFTKFVKalakELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASIL 1330
Cdd:PTZ00121 1799 KIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIK----EVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEK 1874
|
890 900
....*....|....*....|....*..
gi 1622872516 1331 NISRSDLEEILDTEDEVEIEKTKIDAE 1357
Cdd:PTZ00121 1875 DLKEDDEEEIEEADEIEKIDKDDIERE 1901
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
161-741 |
2.10e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 161 KVLEILQVKDARIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKF---KDKSQEIKDTKECVQNKEEQNR 237
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELeklEKEVKELEELKEEIEELEKELE 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 238 LI---IKNLEEENNKLSTRCTDLLNDLEKLRKQ-----EAHWRKEKYStdaKIKAFEDNLIEARKEVEVSQSKYNALSLQ 309
Cdd:PRK03918 249 SLegsKRKLEEKIRELEERIEELKKEIEELEEKvkelkELKEKAEEYI---KLSEFYEEYLDELREIEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 310 LSNKQTELIQKDMDITLVRKELQELQNLYkqnsthtaqqAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELht 389
Cdd:PRK03918 326 IEERIKELEEKEERLEELKKKLKELEKRL----------EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL-- 393
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 390 cfETTKSNEAMLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAP-------HPLSQESDpdysaqvpyrpslsslETLMV 462
Cdd:PRK03918 394 --EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgRELTEEHR----------------KELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 463 SQKSEIEYLQEKLKIANEKLSEnIPPSKVFSEKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELRKLRKAERKIEnlE 542
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERK-LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLK--E 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 543 KALQLKSQENDELRDAhekrkERLQMLQTNYRAVKEQLKQWEEgsgmtEIGKIKRADPQKLRQ--EDCDAVWNELAYFKR 620
Cdd:PRK03918 533 KLIKLKGEIKSLKKEL-----EKLEELKKKLAELEKKLDELEE-----ELAELLKELEELGFEsvEELEERLKELEPFYN 602
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 621 ENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERRE-----EQLFRSGEDDEVKRSTPEKNGKEM-LEQTLQKV 694
Cdd:PRK03918 603 EYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEElrkelEELEKKYSEEEYEELREEYLELSReLAGLRAEL 682
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 1622872516 695 IELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREK 741
Cdd:PRK03918 683 EELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREK 729
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
462-810 |
2.38e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 462 VSQKSEIEYLQEKLKIANEKLSENIPPSKVFSEKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSEELRKLRKAERKIENL 541
Cdd:PTZ00121 1235 AKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEA 1314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 542 EKALQLK------SQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIGK----------------IKRAD 599
Cdd:PTZ00121 1315 KKADEAKkkaeeaKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKeeakkkadaakkkaeeKKKAD 1394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 600 PQKLRQEDCDAVWNELAYFKRENQELMIQKMNLEE--ELDELKVHISIDKEAIQELNRCVAERREEQLFRSGED----DE 673
Cdd:PTZ00121 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEkkKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEakkaDE 1474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 674 VKRSTPEKNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNK-KLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKD 752
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKaEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622872516 753 VEKENTELQVKISELEREVTFLKRQVAEANALRNENEELINPMEKSHQSADKAKSETA 810
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
148-768 |
1.15e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 1.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 148 VEREKQKSEGKDRKVLEILQVKDariQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKE 227
Cdd:pfam02463 195 LKLQELKLKEQAKKALEYYQLKE---KLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVL 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 228 CVQNKEEQnrlIIKNLEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVE---------- 297
Cdd:pfam02463 272 KENKEEEK---EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEelekelkele 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 298 -VSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLYKQNSTHTAQQAELIQQLQVLN------MDTQKVLRNQE 370
Cdd:pfam02463 349 iKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLelarqlEDLLKEEKKEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 371 DVHTAESisyQKLYNELHTCFETTKSNEAMLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAPHPLSQESDPDYSAQVPY 450
Cdd:pfam02463 429 LEILEEE---EESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKA 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 451 RPSLSSLETLMVSQKS----EIEYLQEKLKIANEKLSENIPPSKVFSEKSIMTSAEGKHKEPPVKRSRSLSPKSSFTDSE 526
Cdd:pfam02463 506 RSGLKVLLALIKDGVGgriiSAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIP 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 527 ELRKLRKAERKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIGKIKRADPQKLRQE 606
Cdd:pfam02463 586 KLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVK 665
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 607 DCDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERRE-EQLFRSGEDDEVKRSTPEKNGKE 685
Cdd:pfam02463 666 ASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEElLADRVQEAQDKINEELKLLKQKI 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 686 MLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSKDVEKENTELQVKIS 765
Cdd:pfam02463 746 DEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIE 825
|
...
gi 1622872516 766 ELE 768
Cdd:pfam02463 826 QEE 828
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
259-428 |
1.89e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 259 NDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQELQNLY 338
Cdd:COG4942 27 AELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEEL 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 339 kqnsthtaqqAELIQQLQVL-NMDTQKVLRNQEDVHTAESIS--YQKLYNELHTCFETTKSNEAMLRQSVVNLQDQLLQK 415
Cdd:COG4942 107 ----------AELLRALYRLgRQPPLALLLSPEDFLDAVRRLqyLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170
....*....|...
gi 1622872516 416 EQENAKLKEKLQE 428
Cdd:COG4942 177 EALLAELEEERAA 189
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
151-769 |
4.24e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.04 E-value: 4.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 151 EKQKSEGKDRKVLEILQVKDARIQEFEQRESVLKQEINDLV--KRKIAVDEENAFLRKEFSELEKKfkdksqeIKDTKEC 228
Cdd:TIGR01612 480 DIKKDIDENSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVpsKNIIGFDIDQNIKAKLYKEIEAG-------LKESYEL 552
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 229 VQNKEEQNRLIIKNLEEENN---KLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFED------NLIEARKEVEVS 299
Cdd:TIGR01612 553 AKNWKKLIHEIKKELEEENEdsiHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDkneyikKAIDLKKIIENN 632
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 300 QSKYNALSLQLSNKQTELIQ-KDMDITLVRKEL------------QELQNLYKQNSTHTAQQAELIQQLQ---------V 357
Cdd:TIGR01612 633 NAYIDELAKISPYQVPEHLKnKDKIYSTIKSELskiyeddidalyNELSSIVKENAIDNTEDKAKLDDLKskidkeydkI 712
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 358 LNMDTQKVLRNQEDVHTAES-----------ISYQKLYNELHTCFETTKSNEAMLRQSV---VNLQDQLLQKEQENAKLK 423
Cdd:TIGR01612 713 QNMETATVELHLSNIENKKNelldiiveikkHIHGEINKDLNKILEDFKNKEKELSNKIndyAKEKDELNKYKSKISEIK 792
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 424 EKLQESQGAPHPLSQESDPDYSAQVPYRPSLSSLETLMVSQKSEIEYLQEKL--KIANEKLSENIPPSKVFSEKSIMTSA 501
Cdd:TIGR01612 793 NHYNDQINIDNIKDEDAKQNYDKSKEYIKTISIKEDEIFKIINEMKFMKDDFlnKVDKFINFENNCKEKIDSEHEQFAEL 872
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 502 EGKHKEPPVKRSRSLSPKsSFTDSEEL-----RKLRKAERKIENLEKA---LQLKSQENDELRDAHEKRKERLQMLQTNY 573
Cdd:TIGR01612 873 TNKIKAEISDDKLNDYEK-KFNDSKSLineinKSIEEEYQNINTLKKVdeyIKICENTKESIEKFHNKQNILKEILNKNI 951
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 574 RAVKEQ---LKQWEEGSGMTEIGKIKRADP--QKLRQEDCDAVWNEL-AYFKRENQELMIQKMN-LEEELDELKVHISID 646
Cdd:TIGR01612 952 DTIKESnliEKSYKDKFDNTLIDKINELDKafKDASLNDYEAKNNELiKYFNDLKANLGKNKENmLYHQFDEKEKATNDI 1031
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 647 KEAIQELNRCVAerreeqlfrsgeDDEVKRSTPEKNGKEMLEQTLQKVIELENR---------LKSFEKRSRKL------ 711
Cdd:TIGR01612 1032 EQKIEDANKNIP------------NIEIAIHTSIYNIIDEIEKEIGKNIELLNKeileeaeinITNFNEIKEKLkhynfd 1099
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622872516 712 ---KEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIIKGSkdvEKENTELQVKISELER 769
Cdd:TIGR01612 1100 dfgKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKS---ENYIDEIKAQINDLED 1157
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1013-1311 |
5.15e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1013 KEVNEKL--LHQQQVSDQRFQTSRQTIKKLNLDLAGLRkeKEDLLKKLES-SSEITSLAEEVSQVTfPRIQVTSL----- 1084
Cdd:TIGR02168 196 NELERQLksLERQAEKAERYKELKAELRELELALLVLR--LEELREELEElQEELKEAEEELEELT-AELQELEEkleel 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1085 -GPSRSMDLEMKQLQCKLKNATNELTKQSSNVKSLKFELLAKEEHIKEMHEKMSRMERDITMKR---HLIEDLKFRQKVN 1160
Cdd:TIGR02168 273 rLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAeelAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1161 LES----NESFSEMLQNLDKKVKTLTEECSNKKISIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKkdlkltllvsRISE 1236
Cdd:TIGR02168 353 LESleaeLEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER----------LQQE 422
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622872516 1237 TESAMADIETAASKQLQGLALQSEQVLEGAQKTLLLANEKVEEFTKFVKALAKELQ---NDVHVVRRQIRELKKMKKN 1311
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDaaeRELAQLQARLDSLERLQEN 500
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
149-335 |
8.06e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.89 E-value: 8.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 149 EREKQKSEGKDRKVLEILQVKDARIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKEC 228
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERR 832
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 229 VQNKEEQNRLI---IKNLEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNA 305
Cdd:TIGR02168 833 IAATERRLEDLeeqIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
|
170 180 190
....*....|....*....|....*....|
gi 1622872516 306 LSLQLSNKQTELIQKDMDITLVRKELQELQ 335
Cdd:TIGR02168 913 LRRELEELREKLAQLELRLEGLEVRIDNLQ 942
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
212-799 |
8.12e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 8.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 212 EKKFKDKSQEIKDTKECVQNKEeqnrLIIKNLEEENNKLSTRCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIE 291
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKE----KELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 292 ARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKEL----QELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLR 367
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIkkkeKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQK 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 368 NQEDVHTAESISYQKL-----YNELHTCFETTKSNeamLRQSVVNLQDQLLQKEQENAKLKEKLQESQGAPHPLSQESDP 442
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnlkkKIQKNKSLESQISE---LKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 443 DYSAQVPYRPSLSSLETLMVSQKSEIEYLQEKLKIANEKLSENIppSKVFseKSIMTSAEGKHKEPPVKRSRSLSPKSSF 522
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDW--NKEL--KSELKNQEKKLEEIQNQISQNNKIISQL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 523 TDseelrklrkaerKIENLEKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMTEIGKIKRADPQK 602
Cdd:TIGR04523 341 NE------------QISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 603 LRQEDCDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERREEQLFRSGEDDEVKRSTPE-- 680
Cdd:TIGR04523 409 QKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQkq 488
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 681 ---KNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETRE----------------K 741
Cdd:TIGR04523 489 kelKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDfelkkenlekeideknK 568
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622872516 742 ELEQIIKGSKDVEKENTELQVKISELEREVTFLKRQVAEANALRNENEELINPMEKSH 799
Cdd:TIGR04523 569 EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
984-1273 |
2.40e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 984 LRERIISLQQQNSVLQNAKKTAELSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLNLDLaglrKEKEDLLK--KLESS 1061
Cdd:pfam10174 420 LKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKKENKDL----KEKVSALQpeLTEKE 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1062 SEITSLAEEVSQVTFPRIQVTSLGPSRSMDLEMK-----QLQCKLKNATN-ELTKQSSNVKSLKFELLAKE--EHIKEMH 1133
Cdd:pfam10174 496 SSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKkeecsKLENQLKKAHNaEEAVRTNPEINDRIRLLEQEvaRYKEESG 575
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1134 EKMSRMER--DITMKRHLIEDLKFRQKVNLESNESFSEMLQNLD-KKVKTLTEECSNKKISIDSLKQRLNVAVKEKSQYE 1210
Cdd:pfam10174 576 KAQAEVERllGILREVENEKNDKDKKIAELESLTLRQMKEQNKKvANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQL 655
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622872516 1211 QMyQKSKEELEKKDLKLTLLVSRISETESAMADIETAASKQLQGLALQSEQVLEGAQKTLLLA 1273
Cdd:pfam10174 656 QL-EELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLRAERRKQLEEILEMKQEALLAA 717
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
173-359 |
2.41e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 173 IQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKECVQNKEEQnrliIKNLEEENNKLST 252
Cdd:TIGR04523 351 LTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQ----IKKLQQEKELLEK 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 253 RCTDLLNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRKELQ 332
Cdd:TIGR04523 427 EIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180
....*....|....*....|....*..
gi 1622872516 333 ELQNlykQNSTHTAQQAELIQQLQVLN 359
Cdd:TIGR04523 507 ELEE---KVKDLTKKISSLKEKIEKLE 530
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
584-1361 |
2.65e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.27 E-value: 2.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 584 EEGSGMTEIGKIKRADPQKLRQEDCDAVWNELAYFKRENQELMIQKMNLEE----ELDELKVHISIDKEAIQELNRCVAE 659
Cdd:pfam02463 159 EEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKAleyyQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 660 RREEQLFRSGEDDEVKRSTPEKNGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNK--------KLMKENDFLKSLLKQ 731
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEeelksellKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 732 QQEDTETREKELEQIIKGSKDVEKENTELQVKISELEREVTFLKRQVAEANALRNENEELINPMEKSHQSADKAKSETAT 811
Cdd:pfam02463 319 SEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 812 TKVRSGRYDCK----------TTMTKVKFKAAKKNCSVGRHHTVLNHSIKVMSNVFENLSKDGWEDVSESSSDSEAQTSQ 881
Cdd:pfam02463 399 LKSEEEKEAQLllelarqledLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 882 TLGTIIVETSQKISPTEDGKDQKESDPTEDSQTKGKEIVQTYLNIdgktpTDYFHDKNAKKPTfQKKNYKMQKSshTAVP 961
Cdd:pfam02463 479 LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR-----IISAHGRLGDLGV-AVENYKVAIS--TAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 962 TRVNREKYKNITAQKSSSNVILLRERIISLQQQNSVLQNAKKTaeLSVKEYKEVNEKLLHQQQVSDQRFQTSRQTIKKLN 1041
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKS--IAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGI 628
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1042 LDLAGLRKEKEDLLKKLESSSEITSLAEEVSQVTFpriQVTSLGPSRSMDLEMKQLQCKLKNATNELTKQSSNVKSLKFE 1121
Cdd:pfam02463 629 LKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSE---VKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1122 LLAKEEHIKEMHEKMSRMERDITMKRHLI--EDLKFRQKVNLESNESFSEMLQNLDKKVKTLTEECSNKKISIDSLKQRL 1199
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQEAQDKIneELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEK 785
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1200 NVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMADIETAASKQLQGLA--LQSEQVLEGAQKTLLLANEKV 1277
Cdd:pfam02463 786 LKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELkeEQKLEKLAEEELERLEEEITK 865
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1278 EEFTKFVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDEVEIEKTKIDAE 1357
Cdd:pfam02463 866 EELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEA 945
|
....
gi 1622872516 1358 NDKE 1361
Cdd:pfam02463 946 DEKE 949
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1162-1292 |
2.77e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.12 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1162 ESNESFSEM---LQNLDKKVKTLTEECSNKKISIDSLKQRLNvavKEKSQYEQMYQKSKEELEKKDLKltllvsRISETE 1238
Cdd:PRK00409 513 EDKEKLNELiasLEELERELEQKAEEAEALLKEAEKLKEELE---EKKEKLQEEEDKLLEEAEKEAQQ------AIKEAK 583
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1622872516 1239 SAMAD-IETAASKQLQGLALQSEQVLEGAQKTLLLANEKVEEFTKFVKALAKELQ 1292
Cdd:PRK00409 584 KEADEiIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
526-787 |
3.09e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 526 EELRKLRKAERKIENL----EKALQLKSQENDELRDAHEKRKERLQMLQTNYRAVKEqlkqweegsgmteigkikradpq 601
Cdd:PRK03918 179 ERLEKFIKRTENIEELikekEKELEEVLREINEISSELPELREELEKLEKEVKELEE----------------------- 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 602 klRQEDCDAVWNELAYFKRENQELMIQKMNLEEELDELKVHISIDKEAIQELNRCVAERREEQLFRSGEDDEVKRSTPEK 681
Cdd:PRK03918 236 --LKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIE 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 682 NGKEMLEQTLQKVIELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQE-----------DTETREKELEQIIKGS 750
Cdd:PRK03918 314 KRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEakakkeelerlKKRLTGLTPEKLEKEL 393
|
250 260 270
....*....|....*....|....*....|....*..
gi 1622872516 751 KDVEKENTELQVKISELEREVTFLKRQVAEANALRNE 787
Cdd:PRK03918 394 EELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
170-808 |
3.36e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 3.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 170 DARIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKkFKDKSQEIKDTKECVQNKEEQNRLIIKNLEEENNK 249
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 250 LSTRCTDLLNDLEKLRKQEahWRKEKYStdaKIKAFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDITLVRK 329
Cdd:PRK03918 271 LKKEIEELEEKVKELKELK--EKAEEYI---KLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 330 ELQELQNLYkqnsthtaqqAELIQQLQVLNMDTQKVLRNQEDVHTAESISYQKLYNELhtcfETTKSNEAMLRQSVVNLQ 409
Cdd:PRK03918 346 KLKELEKRL----------EELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKEL----EELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 410 DQLLQKEQENAKLKEKLQESQGAP-------HPLSQESDpdysaqvpyrpslsslETLMVSQKSEIEYLQEKLKIANEKL 482
Cdd:PRK03918 412 ARIGELKKEIKELKKAIEELKKAKgkcpvcgRELTEEHR----------------KELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 483 SEnippskvfseksimtsaegkhkeppvKRSRSLSPKSSFTDSEELRKLRKAERKIENLEKALQ-LKSQENDELRDAHEK 561
Cdd:PRK03918 476 RK--------------------------LRKELRELEKVLKKESELIKLKELAEQLKELEEKLKkYNLEELEKKAEEYEK 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 562 RKERLQMLQTNYRAVKEQLKQWEEgsgmteigkikradpqklrqedcdavwnelayFKRENQELMIQKMNLEEELDELKv 641
Cdd:PRK03918 530 LKEKLIKLKGEIKSLKKELEKLEE--------------------------------LKKKLAELEKKLDELEEELAELL- 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 642 hisidkeaiqelnrcvaERREEQLFRSGEDDEVKRSTPEKNGKEMLEqTLQKVIELENRLKSFEKRSRKLKEGNKKLMKE 721
Cdd:PRK03918 577 -----------------KELEELGFESVEELEERLKELEPFYNEYLE-LKDAEKELEREEKELKKLEEELDKAFEELAET 638
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 722 NDFLKSLlkqqqedtetrEKELEQiiKGSKDVEKENTELQVKISELEREVTFLKRQVAEANALRNENEELINPMEKSHQS 801
Cdd:PRK03918 639 EKRLEEL-----------RKELEE--LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE 705
|
....*..
gi 1622872516 802 ADKAKSE 808
Cdd:PRK03918 706 REKAKKE 712
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1093-1348 |
4.84e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 4.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1093 EMKQLQCKLKNATNELTKQSSNVKSLKFELLAKEEHIKEMHE-------KMSRMERDITMKRHLIEDLKFRQKVNLESNE 1165
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAeeyellaELARLEQDIARLEERRRELEERLEELEEELA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1166 SFSEMLQNLDKKVKTLTEECSNKKISIDSLKQRLNVAVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMADIE 1245
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1246 TAAsKQLQGLALQSEQVLEGAQKTLLLANEKVEEFTKFVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTL 1325
Cdd:COG1196 407 EAE-EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEE 485
|
250 260
....*....|....*....|...
gi 1622872516 1326 AASILNISRSDLEEILDTEDEVE 1348
Cdd:COG1196 486 LAEAAARLLLLLEAEADYEGFLE 508
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
161-335 |
5.01e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 5.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 161 KVLEILQVKDARIQEFEQRESVLKQEINDLVKRKIAVDEENAFLRKEFSELEKKFKDKSQEIKDTKECVQNKEEQNRLII 240
Cdd:COG1579 7 RALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 241 KNleeennklstrctdllNDLEKLRKQEAHWRKEKYSTDAKIKAFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELiqk 320
Cdd:COG1579 87 NN----------------KEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAEL--- 147
|
170
....*....|....*
gi 1622872516 321 DMDITLVRKELQELQ 335
Cdd:COG1579 148 DEELAELEAELEELE 162
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1122-1357 |
6.44e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1122 LLAKEEHIKEMHEKMSRMERDITMKRHLIEDLKfrqkvnlesnESFSEMLQNLDKKVKTLTEecsnKKISIDSLKQRLNV 1201
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEKIAELEKALAELR----------KELEELEEELEQLRKELEE----LSRQISALRKDLAR 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1202 AVKEKSQYEQMYQKSKEELEKKDLKLTLLVSRISETESAMADIEtAASKQLQGLALQSEQVLEGAQKTLLLANEKVEEft 1281
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAE-AEIEELEAQIEQLKEELKALREALDELRAELTL-- 814
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622872516 1282 kfVKALAKELQNDVHVVRRQIRELKKMKKNRDACKTSTHKAQTLAASILNISRSDLEEILDTEDEVEIEKTKIDAE 1357
Cdd:TIGR02168 815 --LNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
125-299 |
6.55e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 40.85 E-value: 6.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 125 FVWSLWKRLQVTNPDLTQVVSLVVEREKQKSEGKDRKVLEILQVKDARIQEFEQRESVLKQEINDLVKRKIAVDEEN--- 201
Cdd:PRK12705 21 LVVLLKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAekl 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 202 AFLRKEFSELEKKFKDKSQEIKDTKECVQNK---------EEQNRLIIKNLEEENNKLSTRctdllndLEKLRKQEAHWR 272
Cdd:PRK12705 101 DNLENQLEEREKALSARELELEELEKQLDNElyrvagltpEQARKLLLKLLDAELEEEKAQ-------RVKKIEEEADLE 173
|
170 180
....*....|....*....|....*..
gi 1622872516 273 KEKYSTDAKIKAFEDNLIEARKEVEVS 299
Cdd:PRK12705 174 AERKAQNILAQAMQRIASETASDLSVS 200
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1035-1274 |
7.07e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1035 QTIKKLNLDLAGLRKEKEDLLKKLES-SSEITSLAEEVsqvtfpriqvtslgpsRSMDLEMKQLQCKLKNATNELTKQSS 1113
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAAlKKEEKALLKQL----------------AALERRIAALARRIRALEQELAALEA 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1114 NVKSLKFELLAKEEHIKEMHEKMSRMERDI-TMKRHLIEDLKFRQKVNLESNESFsEMLQNLDKKVKTLTEECSNKKISI 1192
Cdd:COG4942 84 ELAELEKEIAELRAELEAQKEELAELLRALyRLGRQPPLALLLSPEDFLDAVRRL-QYLKYLAPARREQAEELRADLAEL 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 1193 DSLKQRLNVAVKEKSQYEQMYQKSKEELEK----KDLKLTLLVSRISETESAMADIETAAsKQLQGLALQSEQVLEGAQK 1268
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEAlkaeRQKLLARLEKELAELAAELAELQQEA-EELEALIARLEAEAAAAAE 241
|
....*.
gi 1622872516 1269 TLLLAN 1274
Cdd:COG4942 242 RTPAAG 247
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
128-430 |
7.86e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.77 E-value: 7.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 128 SLWKRLQVTNPDLTQVVSLVVErekqkseGKDRKvlEILQVKDARIQEFEQRESVLKQEindlvkrkiAVDEENAFLRKE 207
Cdd:COG3206 122 RLRKNLTVEPVKGSNVIEISYT-------SPDPE--LAAAVANALAEAYLEQNLELRRE---------EARKALEFLEEQ 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 208 FSELEKKFKDKSQEIKDTKEcvqnkeeQNRLIikNLEEENNKLSTRctdllndleklrkqeahwrkekystdakIKAFED 287
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQ-------KNGLV--DLSEEAKLLLQQ----------------------------LSELES 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 288 NLIEARKEVEVSQSKYNALSLQLSNKQTEL--IQKDMDITLVRKELQELQnlykqnsthtAQQAELIQQLQVLNMDTQKV 365
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALpeLLQSPVIQQLRAQLAELE----------AELAELSARYTPNHPDVIAL 296
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622872516 366 LRNQEDVHTAESISYQKLYNELHTCFETTKSNEAMLRQSVVNLQDQLL---QKEQENAKLKEKLQESQ 430
Cdd:COG3206 297 RAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAelpELEAELRRLEREVEVAR 364
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
401-816 |
8.18e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 8.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 401 LRQSVVNLQDQLLQKEQENAKLKEKLQESQGApHPLSQESDPDYSAQVPYRPSLSSLETLMVSQKSEIEYLQEKLKIANE 480
Cdd:PRK03918 257 LEEKIRELEERIEELKKEIEELEEKVKELKEL-KEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 481 KLSENIPPSKVFSE-KSIMTSAEGKHKEppVKRSRSLSpkssftdsEELRKLRK--AERKIENLEKALQLKSQENDELRD 557
Cdd:PRK03918 336 KEERLEELKKKLKElEKRLEELEERHEL--YEEAKAKK--------EELERLKKrlTGLTPEKLEKELEELEKAKEEIEE 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 558 AHEKRKERLQMLQTNYRAVKEQLKQWEEGSGMT-----EIGKIKRADPQKLRQEDCDAVWNELAYFKRENQELMIQKMNL 632
Cdd:PRK03918 406 EISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 633 EEELDELKVHISIDK--EAIQELNRCVAERREEQLFRSGEDDEVKRSTPEKNGKEM--LEQTLQKVIELENRLKSFEKRS 708
Cdd:PRK03918 486 EKVLKKESELIKLKElaEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIksLKKELEKLEELKKKLAELEKKL 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 709 RKLKEGNKKLMKEndfLKSLLKQQQEDTETREKELEQIIK---GSKDVEKENTELQVKISELEREVTFLKRQVAEANALR 785
Cdd:PRK03918 566 DELEEELAELLKE---LEELGFESVEELEERLKELEPFYNeylELKDAEKELEREEKELKKLEEELDKAFEELAETEKRL 642
|
410 420 430
....*....|....*....|....*....|.
gi 1622872516 786 NENEELINPMEKSHQSADKAKSETATTKVRS 816
Cdd:PRK03918 643 EELRKELEELEKKYSEEEYEELREEYLELSR 673
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
671-797 |
8.49e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 40.61 E-value: 8.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622872516 671 DDEVKRSTPEKNGKEMLEQTlqkviELENRLKSFEKRSRKLKEGNKKLMKENDFLKSLLKQQQEDTETREKELEQIikgs 750
Cdd:COG2433 383 EELIEKELPEEEPEAEREKE-----HEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEA---- 453
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 1622872516 751 KDVEKENTELQVKISELEREVTFLKRQVAEanaLRNENEELINPMEK 797
Cdd:COG2433 454 RSEERREIRKDREISRLDREIERLERELEE---ERERIEELKRKLER 497
|
|
| |
