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Conserved domains on  [gi|1622871504|ref|XP_014972498|]
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kinesin-like protein KIF12 isoform X2 [Macaca mulatta]

Protein Classification

kinesin family protein( domain architecture ID 10058885)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; similar to N-type kinesins that are (+) end-directed motors and have an N-terminal motor domain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
25-363 2.28e-133

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 394.31  E-value: 2.28e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  25 PIQVVLRVRPMSAAElRRGQQNVLHCSGTRTLQVSPPGGG--PEVAFRFGAVLDAACTQEDVFRACGvRRMGELALRGFS 102
Cdd:cd00106     1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKNRvaPPKTFAFDAVFDSTSTQEEVYEGTA-KPLVDSALEGYN 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 103 CTVFTFGQTGSGKTYTLTGPPPqgegvpvppSLAGIMQRTFAWLLDRVQHLGAP---VTLRASYLEIYNEQVRDLLSLGS 179
Cdd:cd00106    79 GTIFAYGQTGSGKTYTMLGPDP---------EQRGIIPRALEDIFERIDKRKETkssFSVSASYLEIYNEKIYDLLSPVP 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 180 PRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIshqtaQQMPPVDPGAPC 259
Cdd:cd00106   150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHV-----KQRNREKSGESV 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 260 VGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQRKqsHIPFRDSKLTKLLADSLGGRGVTLMV 339
Cdd:cd00106   225 TSSKLNLVDLAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQNK--HIPYRDSKLTRLLQDSLGGNSKTIMI 302
                         330       340
                  ....*....|....*....|....
gi 1622871504 340 ACVSPSAQCLPETLSTLRYASRAQ 363
Cdd:cd00106   303 ACISPSSENFEETLSTLRFASRAK 326
YhaN super family cl34808
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
381-477 4.00e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


The actual alignment was detected with superfamily member COG4717:

Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.14  E-value: 4.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 381 QRLETEMLQLQEENRRLQFQLDQMdcktsgLSGARVAWAQRnlygmLQEFMLENERLRKEKSQLQNSQDLARNEQRILAQ 460
Cdd:COG4717   159 RELEEELEELEAELAELQEELEEL------LEQLSLATEEE-----LQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
                          90
                  ....*....|....*..
gi 1622871504 461 QVHALERRLLSASYRHQ 477
Cdd:COG4717   228 ELEQLENELEAAALEER 244
 
Name Accession Description Interval E-value
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
25-363 2.28e-133

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 394.31  E-value: 2.28e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  25 PIQVVLRVRPMSAAElRRGQQNVLHCSGTRTLQVSPPGGG--PEVAFRFGAVLDAACTQEDVFRACGvRRMGELALRGFS 102
Cdd:cd00106     1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKNRvaPPKTFAFDAVFDSTSTQEEVYEGTA-KPLVDSALEGYN 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 103 CTVFTFGQTGSGKTYTLTGPPPqgegvpvppSLAGIMQRTFAWLLDRVQHLGAP---VTLRASYLEIYNEQVRDLLSLGS 179
Cdd:cd00106    79 GTIFAYGQTGSGKTYTMLGPDP---------EQRGIIPRALEDIFERIDKRKETkssFSVSASYLEIYNEKIYDLLSPVP 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 180 PRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIshqtaQQMPPVDPGAPC 259
Cdd:cd00106   150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHV-----KQRNREKSGESV 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 260 VGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQRKqsHIPFRDSKLTKLLADSLGGRGVTLMV 339
Cdd:cd00106   225 TSSKLNLVDLAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQNK--HIPYRDSKLTRLLQDSLGGNSKTIMI 302
                         330       340
                  ....*....|....*....|....
gi 1622871504 340 ACVSPSAQCLPETLSTLRYASRAQ 363
Cdd:cd00106   303 ACISPSSENFEETLSTLRFASRAK 326
Kinesin pfam00225
Kinesin motor domain;
31-365 6.16e-130

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 385.39  E-value: 6.16e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  31 RVRPMSAAELRRGQQNVLHCSGTRTLQV---SPPGGGPEVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGFSCTVFT 107
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVDSETVessHLTNKNRTKTFTFDKVFDPEATQEDVYEET-AKPLVESVLEGYNVTIFA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 108 FGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAWLLDRVQHLGAPV--TLRASYLEIYNEQVRDLLSLG--SPRPL 183
Cdd:pfam00225  80 YGQTGSGKTYTMEGSDEQ----------PGIIPRALEDLFDRIQKTKERSefSVKVSYLEIYNEKIRDLLSPSnkNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 184 PVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIshqTAQQMPPVDPGAPCVGgK 263
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITV---EQRNRSTGGEESVKTG-K 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 264 LCFVDLAGSEKVAATGSR-GELMLEANSINRSLLALGHCISLLLDPQrkQSHIPFRDSKLTKLLADSLGGRGVTLMVACV 342
Cdd:pfam00225 226 LNLVDLAGSERASKTGAAgGQRLKEAANINKSLSALGNVISALADKK--SKHIPYRDSKLTRLLQDSLGGNSKTLMIANI 303
                         330       340
                  ....*....|....*....|...
gi 1622871504 343 SPSAQCLPETLSTLRYASRAQRV 365
Cdd:pfam00225 304 SPSSSNYEETLSTLRFASRAKNI 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
25-370 3.91e-113

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 342.63  E-value: 3.91e-113
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504   25 PIQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQV---SPPGGGPEVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGF 101
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLtvrSPKNRQGEKKFTFDKVFDATASQEDVFEET-AAPLVDSVLEGY 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  102 SCTVFTFGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAWLLDRVQHLGAPV--TLRASYLEIYNEQVRDLLSlGS 179
Cdd:smart00129  80 NATIFAYGQTGSGKTYTMIGTPDS----------PGIIPRALKDLFEKIDKREEGWqfSVKVSYLEIYNEKIRDLLN-PS 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  180 PRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIShqtaQQMPPVDPGAPC 259
Cdd:smart00129 149 SKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVE----QKIKNSSSGSGK 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  260 VGgKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQrKQSHIPFRDSKLTKLLADSLGGRGVTLMV 339
Cdd:smart00129 225 AS-KLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHS-KSRHIPYRDSKLTRLLQDSLGGNSKTLMI 302
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1622871504  340 ACVSPSAQCLPETLSTLRYASRAQRVTTRPQ 370
Cdd:smart00129 303 ANVSPSSSNLEETLSTLRFASRAKEIKNKPI 333
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
66-469 2.72e-73

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 246.19  E-value: 2.72e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  66 EVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGFSCTVFTFGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAW 145
Cdd:COG5059    55 EGTYAFDKVFGPSATQEDVYEET-IKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEE----------PGIIPLSLKE 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 146 LLDRVQHL--GAPVTLRASYLEIYNEQVRDLLSLGSPRPLpVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSS 223
Cdd:COG5059   124 LFSKLEDLsmTKDFAVSISYLEIYNEKIYDLLSPNEESLN-IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTA 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 224 AHTLNQASSRSHALLTLYIsHQTAQQMPPVdpgapcVGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCIS 303
Cdd:COG5059   203 STEINDESSRSHSIFQIEL-ASKNKVSGTS------ETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVIN 275
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 304 LLLDPqRKQSHIPFRDSKLTKLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRVTTRPQApKSPVAKQPQRL 383
Cdd:COG5059   276 ALGDK-KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQV-NSSSDSSREIE 353
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 384 ET--EMLQLQEENRRLQFQLDQMDCKTSGlsgarvawaqRNLYGMLQEFMLENERLrKEKSQLQNSQDLARNEQRILAQQ 461
Cdd:COG5059   354 EIkfDLSEDRSEIEILVFREQSQLSQSSL----------SGIFAYMQSLKKETETL-KSRIDLIMKSIISGTFERKKLLK 422

                  ....*...
gi 1622871504 462 VHALERRL 469
Cdd:COG5059   423 EEGWKYKS 430
PLN03188 PLN03188
kinesin-12 family protein; Provisional
14-432 9.33e-58

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 211.33  E-value: 9.33e-58
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504   14 SLEQGPEG--PETPIQVVLRVRPMSAAElrRGQQNVLHCSGTrTLQVSppgggpEVAFRFGAVLDAACTQEDVFRACGVR 91
Cdd:PLN03188    86 SAETAPENgvSDSGVKVIVRMKPLNKGE--EGEMIVQKMSND-SLTIN------GQTFTFDSIADPESTQEDIFQLVGAP 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504   92 rMGELALRGFSCTVFTFGQTGSGKTYTLTGPPPQGEGVPVPPSLAGIMQRTFAWLLDRVQHLGAPVT-------LRASYL 164
Cdd:PLN03188   157 -LVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHAdrqlkyqCRCSFL 235
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  165 EIYNEQVRDLLSlGSPRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYISH 244
Cdd:PLN03188   236 EIYNEQITDLLD-PSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVES 314
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  245 QTAQQmppVDPGAPCVGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQR--KQSHIPFRDSKL 322
Cdd:PLN03188   315 RCKSV---ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQtgKQRHIPYRDSRL 391
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  323 TKLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRVTTRpqapkspvAKQPQRLETEMLQLQEENRRLQFQLD 402
Cdd:PLN03188   392 TFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNK--------AVVNEVMQDDVNFLREVIRQLRDELQ 463
                          410       420       430
                   ....*....|....*....|....*....|....
gi 1622871504  403 QMDCKTSGLSGARVA----WAQRNLYGMLQEFML 432
Cdd:PLN03188   464 RVKANGNNPTNPNVAystaWNARRSLNLLKSFGL 497
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
381-477 4.00e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.14  E-value: 4.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 381 QRLETEMLQLQEENRRLQFQLDQMdcktsgLSGARVAWAQRnlygmLQEFMLENERLRKEKSQLQNSQDLARNEQRILAQ 460
Cdd:COG4717   159 RELEEELEELEAELAELQEELEEL------LEQLSLATEEE-----LQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
                          90
                  ....*....|....*..
gi 1622871504 461 QVHALERRLLSASYRHQ 477
Cdd:COG4717   228 ELEQLENELEAAALEER 244
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
378-469 4.46e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.43  E-value: 4.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  378 KQPQRLETEMLQLQEENRRLQFQLDQMDCKTSGLSGARVAWAQRNLYGMLQEFMLEN---------ERLRKEKSQLQNSQ 448
Cdd:TIGR02168  316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESrleeleeqlETLRSKVAQLELQI 395
                           90       100
                   ....*....|....*....|.
gi 1622871504  449 DLARNEQRILAQQVHALERRL 469
Cdd:TIGR02168  396 ASLNNEIERLEARLERLEDRR 416
 
Name Accession Description Interval E-value
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
25-363 2.28e-133

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 394.31  E-value: 2.28e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  25 PIQVVLRVRPMSAAElRRGQQNVLHCSGTRTLQVSPPGGG--PEVAFRFGAVLDAACTQEDVFRACGvRRMGELALRGFS 102
Cdd:cd00106     1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPKNRvaPPKTFAFDAVFDSTSTQEEVYEGTA-KPLVDSALEGYN 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 103 CTVFTFGQTGSGKTYTLTGPPPqgegvpvppSLAGIMQRTFAWLLDRVQHLGAP---VTLRASYLEIYNEQVRDLLSLGS 179
Cdd:cd00106    79 GTIFAYGQTGSGKTYTMLGPDP---------EQRGIIPRALEDIFERIDKRKETkssFSVSASYLEIYNEKIYDLLSPVP 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 180 PRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIshqtaQQMPPVDPGAPC 259
Cdd:cd00106   150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHV-----KQRNREKSGESV 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 260 VGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQRKqsHIPFRDSKLTKLLADSLGGRGVTLMV 339
Cdd:cd00106   225 TSSKLNLVDLAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALADGQNK--HIPYRDSKLTRLLQDSLGGNSKTIMI 302
                         330       340
                  ....*....|....*....|....
gi 1622871504 340 ACVSPSAQCLPETLSTLRYASRAQ 363
Cdd:cd00106   303 ACISPSSENFEETLSTLRFASRAK 326
Kinesin pfam00225
Kinesin motor domain;
31-365 6.16e-130

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 385.39  E-value: 6.16e-130
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  31 RVRPMSAAELRRGQQNVLHCSGTRTLQV---SPPGGGPEVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGFSCTVFT 107
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVESVDSETVessHLTNKNRTKTFTFDKVFDPEATQEDVYEET-AKPLVESVLEGYNVTIFA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 108 FGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAWLLDRVQHLGAPV--TLRASYLEIYNEQVRDLLSLG--SPRPL 183
Cdd:pfam00225  80 YGQTGSGKTYTMEGSDEQ----------PGIIPRALEDLFDRIQKTKERSefSVKVSYLEIYNEKIRDLLSPSnkNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 184 PVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIshqTAQQMPPVDPGAPCVGgK 263
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITV---EQRNRSTGGEESVKTG-K 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 264 LCFVDLAGSEKVAATGSR-GELMLEANSINRSLLALGHCISLLLDPQrkQSHIPFRDSKLTKLLADSLGGRGVTLMVACV 342
Cdd:pfam00225 226 LNLVDLAGSERASKTGAAgGQRLKEAANINKSLSALGNVISALADKK--SKHIPYRDSKLTRLLQDSLGGNSKTLMIANI 303
                         330       340
                  ....*....|....*....|...
gi 1622871504 343 SPSAQCLPETLSTLRYASRAQRV 365
Cdd:pfam00225 304 SPSSSNYEETLSTLRFASRAKNI 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
25-370 3.91e-113

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 342.63  E-value: 3.91e-113
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504   25 PIQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQV---SPPGGGPEVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGF 101
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLtvrSPKNRQGEKKFTFDKVFDATASQEDVFEET-AAPLVDSVLEGY 79
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  102 SCTVFTFGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAWLLDRVQHLGAPV--TLRASYLEIYNEQVRDLLSlGS 179
Cdd:smart00129  80 NATIFAYGQTGSGKTYTMIGTPDS----------PGIIPRALKDLFEKIDKREEGWqfSVKVSYLEIYNEKIRDLLN-PS 148
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  180 PRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIShqtaQQMPPVDPGAPC 259
Cdd:smart00129 149 SKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVE----QKIKNSSSGSGK 224
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  260 VGgKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQrKQSHIPFRDSKLTKLLADSLGGRGVTLMV 339
Cdd:smart00129 225 AS-KLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHS-KSRHIPYRDSKLTRLLQDSLGGNSKTLMI 302
                          330       340       350
                   ....*....|....*....|....*....|.
gi 1622871504  340 ACVSPSAQCLPETLSTLRYASRAQRVTTRPQ 370
Cdd:smart00129 303 ANVSPSSSNLEETLSTLRFASRAKEIKNKPI 333
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
24-362 2.87e-93

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 291.54  E-value: 2.87e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  24 TPIQVVLRVRPMSAAELRRGQQNVLH-CSGTRTLQVsppggGPEVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGFS 102
Cdd:cd01372     1 SSVRVAVRVRPLLPKEIIEGCRICVSfVPGEPQVTV-----GTDKSFTFDYVFDPSTEQEEVYNTC-VAPLVDGLFEGYN 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 103 CTVFTFGQTGSGKTYTLTGpppqGEGVPVPPSLAGIMQRTFAWLLDRVQHL--GAPVTLRASYLEIYNEQVRDLLSLGSP 180
Cdd:cd01372    75 ATVLAYGQTGSGKTYTMGT----AYTAEEDEEQVGIIPRAIQHIFKKIEKKkdTFEFQLKVSFLEIYNEEIRDLLDPETD 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 181 R--PLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIshqtaQQMPPVDPGAP 258
Cdd:cd01372   151 KkpTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITL-----EQTKKNGPIAP 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 259 CVGG--------KLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQRKQSHIPFRDSKLTKLLADSL 330
Cdd:cd01372   226 MSADdknstftsKFHFVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGDESKKGAHVPYRDSKLTRLLQDSL 305
                         330       340       350
                  ....*....|....*....|....*....|..
gi 1622871504 331 GGRGVTLMVACVSPSAQCLPETLSTLRYASRA 362
Cdd:cd01372   306 GGNSHTLMIACVSPADSNFEETLNTLKYANRA 337
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
26-362 3.82e-90

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 283.47  E-value: 3.82e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  26 IQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVSPPGGGP------------------EVAFRFGAVLDAACTQEDVFRA 87
Cdd:cd01370     2 LTVAVRVRPFSEKEKNEGFRRIVKVMDNHMLVFDPKDEEDgffhggsnnrdrrkrrnkELKYVFDRVFDETSTQEEVYEE 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  88 CgVRRMGELALRGFSCTVFTFGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAWLLDRVQHLGAP--VTLRASYLE 165
Cdd:cd01370    82 T-TKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQE----------PGLMVLTMKELFKRIESLKDEkeFEVSMSYLE 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 166 IYNEQVRDLLSLGSpRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIshq 245
Cdd:cd01370   151 IYNETIRDLLNPSS-GPLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITV--- 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 246 taQQMPPVDPGAPCVG-GKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQRKQSHIPFRDSKLTK 324
Cdd:cd01370   227 --RQQDKTASINQQVRqGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALADPGKKNKHIPYRDSKLTR 304
                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 1622871504 325 LLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRA 362
Cdd:cd01370   305 LLKDSLGGNCRTVMIANISPSSSSYEETHNTLKYANRA 342
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
26-365 1.07e-84

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 268.95  E-value: 1.07e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  26 IQVVLRVRPMSAAELRRGQQNVLHCS-GTRTLQVSPPGGG---PEVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGF 101
Cdd:cd01371     3 VKVVVRCRPLNGKEKAAGALQIVDVDeKRGQVSVRNPKATanePPKTFTFDAVFDPNSKQLDVYDET-ARPLVDSVLEGY 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 102 SCTVFTFGQTGSGKTYTLtgpppqgEGVPVPPSLAGIMQRTFAWLLDRVQHLGAPVT--LRASYLEIYNEQVRDLLSLGS 179
Cdd:cd01371    82 NGTIFAYGQTGTGKTYTM-------EGKREDPELRGIIPNSFAHIFGHIARSQNNQQflVRVSYLEIYNEEIRDLLGKDQ 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 180 PRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYI----------SHQTAqq 249
Cdd:cd01371   155 TKRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIecsekgedgeNHIRV-- 232
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 250 mppvdpgapcvgGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPqrKQSHIPFRDSKLTKLLADS 329
Cdd:cd01371   233 ------------GKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDG--KSTHIPYRDSKLTRLLQDS 298
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1622871504 330 LGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRV 365
Cdd:cd01371   299 LGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 334
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
26-366 2.99e-84

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 267.54  E-value: 2.99e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  26 IQVVLRVRPMSAAELRRGQQNVL-HCSGTRTLQVSPPGGGpEVAFRFGAVLDAACTQEDVFRAcgVRRMGELALRGFSCT 104
Cdd:cd01366     4 IRVFCRVRPLLPSEENEDTSHITfPDEDGQTIELTSIGAK-QKEFSFDKVFDPEASQEDVFEE--VSPLVQSALDGYNVC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 105 VFTFGQTGSGKTYTLTGPPpqgegvpvppSLAGIMQRTFAWLLDRVQHL---GAPVTLRASYLEIYNEQVRDLLS--LGS 179
Cdd:cd01366    81 IFAYGQTGSGKTYTMEGPP----------ESPGIIPRALQELFNTIKELkekGWSYTIKASMLEIYNETIRDLLApgNAP 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 180 PRPLPVRWNKTQG-FYVEQLRVVEFRSLEALMELLQMGlSRRRSSAHT-LNQASSRSHALLTLYIS--HQTAQQmppvdp 255
Cdd:cd01366   151 QKKLEIRHDSEKGdTTVTNLTEVKVSSPEEVRQLLKKA-SKNRSTASTaMNEHSSRSHSVFILHISgrNLQTGE------ 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 256 gapCVGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLdpqRKQSHIPFRDSKLTKLLADSLGGRGV 335
Cdd:cd01366   224 ---ISVGKLNLVDLAGSERLNKSGATGDRLKETQAINKSLSALGDVISALR---QKQSHIPYRNSKLTYLLQDSLGGNSK 297
                         330       340       350
                  ....*....|....*....|....*....|.
gi 1622871504 336 TLMVACVSPSAQCLPETLSTLRYASRAQRVT 366
Cdd:cd01366   298 TLMFVNISPAESNLNETLNSLRFASKVNSCE 328
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
23-370 4.10e-82

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 263.03  E-value: 4.10e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  23 ETPIQVVLRVRPMSAAELRRGQQNVLHCSGTRTlQVSPPGGGPEVA-----FRFGAVLDAACTQEDVFRACgVRRMGELA 97
Cdd:cd01364     1 GKNIQVVVRCRPFNLRERKASSHSVVEVDPVRK-EVSVRTGGLADKsstktYTFDMVFGPEAKQIDVYRSV-VCPILDEV 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  98 LRGFSCTVFTFGQTGSGKTYTLTGP-PPQGEGVPVPPSLAGIMQRTFAWLLDRVQHLGAPVTLRASYLEIYNEQVRDLLS 176
Cdd:cd01364    79 LMGYNCTIFAYGQTGTGKTYTMEGDrSPNEEYTWELDPLAGIIPRTLHQLFEKLEDNGTEYSVKVSYLEIYNEELFDLLS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 177 LGSPRPLPVR----WNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHAL--LTLYISHQTAQqm 250
Cdd:cd01364   159 PSSDVSERLRmfddPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVfsITIHIKETTID-- 236
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 251 ppvdpGAPCVG-GKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDpqrKQSHIPFRDSKLTKLLADS 329
Cdd:cd01364   237 -----GEELVKiGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE---RAPHVPYRESKLTRLLQDS 308
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 1622871504 330 LGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRVTTRPQ 370
Cdd:cd01364   309 LGGRTKTSIIATISPASVNLEETLSTLEYAHRAKNIKNKPE 349
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
26-371 1.27e-79

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 256.90  E-value: 1.27e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  26 IQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVSPPGG--------GPEVAFRFGAVLDAA-------CTQEDVFRACGv 90
Cdd:cd01365     3 VKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdknnkatrEVPKSFSFDYSYWSHdsedpnyASQEQVYEDLG- 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  91 RRMGELALRGFSCTVFTFGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAWLLDRV-----QHLGAPVTLraSYLE 165
Cdd:cd01365    82 EELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQ----------PGIIPRLCEDLFSRIadttnQNMSYSVEV--SYME 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 166 IYNEQVRDLLS---LGSPRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLyi 242
Cdd:cd01365   150 IYNEKVRDLLNpkpKKNKGNLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTI-- 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 243 shQTAQQMPPVDPGAPC-VGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQR-----KQSHIP 316
Cdd:cd01365   228 --VLTQKRHDAETNLTTeKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSgkskkKSSFIP 305
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1622871504 317 FRDSKLTKLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRVTTRPQA 371
Cdd:cd01365   306 YRDSVLTWLLKENLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKIVNRAVV 360
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
23-365 3.07e-79

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 254.56  E-value: 3.07e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  23 ETPIQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVSppGGGPEVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGFS 102
Cdd:cd01369     1 ECNIKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIA--TSETGKTFSFDRVFDPNTTQEDVYNFA-AKPIVDDVLNGYN 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 103 CTVFTFGQTGSGKTYTLtgpppqgEGVPVPPSLAGIMQRTFAWLLDRVQHL--GAPVTLRASYLEIYNEQVRDLLSLgSP 180
Cdd:cd01369    78 GTIFAYGQTSSGKTYTM-------EGKLGDPESMGIIPRIVQDIFETIYSMdeNLEFHVKVSYFEIYMEKIRDLLDV-SK 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 181 RPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHA--LLTLYISHQTAQQMppvdpgap 258
Cdd:cd01369   150 TNLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSifLINVKQENVETEKK-------- 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 259 cVGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDpqRKQSHIPFRDSKLTKLLADSLGGRGVTLM 338
Cdd:cd01369   222 -KSGKLYLVDLAGSEKVSKTGAEGAVLDEAKKINKSLSALGNVINALTD--GKKTHIPYRDSKLTRILQDSLGGNSRTTL 298
                         330       340
                  ....*....|....*....|....*..
gi 1622871504 339 VACVSPSAQCLPETLSTLRYASRAQRV 365
Cdd:cd01369   299 IICCSPSSYNESETLSTLRFGQRAKTI 325
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
26-365 2.93e-76

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 246.48  E-value: 2.93e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  26 IQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVSPPGGgpevAFRFGAVLDAACTQEDVFRACgVRRMGELALRGFSCTV 105
Cdd:cd01374     2 ITVTVRVRPLNSREIGINEQVAWEIDNDTIYLVEPPST----SFTFDHVFGGDSTNREVYELI-AKPVVKSALEGYNGTI 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 106 FTFGQTGSGKTYTLTGpppqGEGVPvppslaGIMQRTFAWLLDRVQ-HLGAPVTLRASYLEIYNEQVRDLLSLGSpRPLP 184
Cdd:cd01374    77 FAYGQTSSGKTFTMSG----DEDEP------GIIPLAIRDIFSKIQdTPDREFLLRVSYLEIYNEKINDLLSPTS-QNLK 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 185 VRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYISHQTAQQMppvDPGAPCVGgKL 264
Cdd:cd01374   146 IRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIESSERGEL---EEGTVRVS-TL 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 265 CFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDpQRKQSHIPFRDSKLTKLLADSLGGRGVTLMVACVSP 344
Cdd:cd01374   222 NLIDLAGSERAAQTGAAGVRRKEGSHINKSLLTLGTVISKLSE-GKVGGHIPYRDSKLTRILQPSLGGNSRTAIICTITP 300
                         330       340
                  ....*....|....*....|.
gi 1622871504 345 SAQCLPETLSTLRYASRAQRV 365
Cdd:cd01374   301 AESHVEETLNTLKFASRAKKI 321
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
25-369 2.40e-75

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 245.11  E-value: 2.40e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  25 PIQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVSppgGGPEVAFRFGAVLDAACTQEDVFRACGVRrMGELALRGFSCT 104
Cdd:cd01373     2 AVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLH---SKPPKTFTFDHVADSNTNQESVFQSVGKP-IVESCLSGYNGT 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 105 VFTFGQTGSGKTYTLTGPPpqGEGVPVPPSLAGIMQRTFAWLLDRVQH------LGAPVTLRASYLEIYNEQVRDLLSLG 178
Cdd:cd01373    78 IFAYGQTGSGKTYTMWGPS--ESDNESPHGLRGVIPRIFEYLFSLIQRekekagEGKSFLCKCSFLEIYNEQIYDLLDPA 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 179 SpRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYISHQTAQQmppvdpgap 258
Cdd:cd01373   156 S-RNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKA--------- 225
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 259 CVG----GKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLD-PQRKQSHIPFRDSKLTKLLADSLGGR 333
Cdd:cd01373   226 CFVnirtSRLNLVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDvAHGKQRHVCYRDSKLTFLLRDSLGGN 305
                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 1622871504 334 GVTLMVACVSPSAQCLPETLSTLRYASRAQRVTTRP 369
Cdd:cd01373   306 AKTAIIANVHPSSKCFGETLSTLRFAQRAKLIKNKA 341
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
66-469 2.72e-73

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 246.19  E-value: 2.72e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  66 EVAFRFGAVLDAACTQEDVFRACgVRRMGELALRGFSCTVFTFGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAW 145
Cdd:COG5059    55 EGTYAFDKVFGPSATQEDVYEET-IKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEE----------PGIIPLSLKE 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 146 LLDRVQHL--GAPVTLRASYLEIYNEQVRDLLSLGSPRPLpVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSS 223
Cdd:COG5059   124 LFSKLEDLsmTKDFAVSISYLEIYNEKIYDLLSPNEESLN-IREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTA 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 224 AHTLNQASSRSHALLTLYIsHQTAQQMPPVdpgapcVGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCIS 303
Cdd:COG5059   203 STEINDESSRSHSIFQIEL-ASKNKVSGTS------ETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVIN 275
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 304 LLLDPqRKQSHIPFRDSKLTKLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRVTTRPQApKSPVAKQPQRL 383
Cdd:COG5059   276 ALGDK-KKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQV-NSSSDSSREIE 353
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 384 ET--EMLQLQEENRRLQFQLDQMDCKTSGlsgarvawaqRNLYGMLQEFMLENERLrKEKSQLQNSQDLARNEQRILAQQ 461
Cdd:COG5059   354 EIkfDLSEDRSEIEILVFREQSQLSQSSL----------SGIFAYMQSLKKETETL-KSRIDLIMKSIISGTFERKKLLK 422

                  ....*...
gi 1622871504 462 VHALERRL 469
Cdd:COG5059   423 EEGWKYKS 430
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
25-361 1.15e-70

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 232.19  E-value: 1.15e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  25 PIQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVSPP------GGGPEVA-FRFGAVLDAACTQEDVFRACgVRRMGELA 97
Cdd:cd01367     1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPklkvdlTKYIENHtFRFDYVFDESSSNETVYRST-VKPLVPHI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  98 LRGFSCTVFTFGQTGSGKTYTLTGPPPQGEGVPVPPSLAGimQRTFAWLLDRVQHLGAPVTlrASYLEIYNEQVRDLLSL 177
Cdd:cd01367    80 FEGGKATCFAYGQTGSGKTYTMGGDFSGQEESKGIYALAA--RDVFRLLNKLPYKDNLGVT--VSFFEIYGGKVFDLLNR 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 178 GspRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYIShqtaqqmppvDPGA 257
Cdd:cd01367   156 K--KRVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILR----------DRGT 223
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 258 PCVGGKLCFVDLAGSEKVAATGSRG-ELMLEANSINRSLLALGHCISLLldpQRKQSHIPFRDSKLTKLLADSL-GGRGV 335
Cdd:cd01367   224 NKLHGKLSFVDLAGSERGADTSSADrQTRMEGAEINKSLLALKECIRAL---GQNKAHIPFRGSKLTQVLKDSFiGENSK 300
                         330       340
                  ....*....|....*....|....*.
gi 1622871504 336 TLMVACVSPSAQCLPETLSTLRYASR 361
Cdd:cd01367   301 TCMIATISPGASSCEHTLNTLRYADR 326
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
25-363 4.20e-70

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 231.13  E-value: 4.20e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  25 PIQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVSPP-----------GGGPEVAFRFGAVLDAACTQEDVFRACgVRRM 93
Cdd:cd01368     2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPkgsaanksernGGQKETKFSFSKVFGPNTTQKEFFQGT-ALPL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  94 GELALRGFSCTVFTFGQTGSGKTYTLTGPPPQGegvpvppslaGIMQRTFAWLLDRVQHLGAPVtlraSYLEIYNEQVRD 173
Cdd:cd01368    81 VQDLLHGKNGLLFTYGVTNSGKTYTMQGSPGDG----------GILPRSLDVIFNSIGGYSVFV----SYIEIYNEYIYD 146
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 174 LL-----SLGSPR-PLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYI--SHQ 245
Cdd:cd01368   147 LLepspsSPTKKRqSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLvqAPG 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 246 TAQQMPPVDPGAPCVGgKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQ--RKQSHIPFRDSKLT 323
Cdd:cd01368   227 DSDGDVDQDKDQITVS-QLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLRENQlqGTNKMVPFRDSKLT 305
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 1622871504 324 KLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQ 363
Cdd:cd01368   306 HLFQNYFDGEGKASMIVNVNPCASDYDETLHVMKFSAIAQ 345
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
68-361 3.14e-60

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 204.74  E-value: 3.14e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  68 AFRFGAVLDAAcTQEDVFRACGvRRMGELALRGFSCTVFTFGQTGSGKTYTLTGpppQGEGVpvppSLAGIMQRTFAWLL 147
Cdd:cd01375    49 SFKFDGVLHNA-SQELVYETVA-KDVVSSALAGYNGTIFAYGQTGAGKTFTMTG---GTENY----KHRGIIPRALQQVF 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 148 DRVQHLGAPV-TLRASYLEIYNEQVRDLLS-----LGSPRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRR 221
Cdd:cd01375   120 RMIEERPTKAyTVHVSYLEIYNEQLYDLLStlpyvGPSVTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRI 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 222 SSAHTLNQASSRSHALLTLYISHQTAqqmppvDPG-APCVGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGH 300
Cdd:cd01375   200 IASHTMNKNSSRSHCIFTIHLEAHSR------TLSsEKYITSKLNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQ 273
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622871504 301 CISLLLDPQRkqSHIPFRDSKLTKLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASR 361
Cdd:cd01375   274 AIIALSDKDR--THVPFRQSKLTHVLRDSLGGNCNTVMVANIYGEAAQLEETLSTLRFASR 332
PLN03188 PLN03188
kinesin-12 family protein; Provisional
14-432 9.33e-58

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 211.33  E-value: 9.33e-58
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504   14 SLEQGPEG--PETPIQVVLRVRPMSAAElrRGQQNVLHCSGTrTLQVSppgggpEVAFRFGAVLDAACTQEDVFRACGVR 91
Cdd:PLN03188    86 SAETAPENgvSDSGVKVIVRMKPLNKGE--EGEMIVQKMSND-SLTIN------GQTFTFDSIADPESTQEDIFQLVGAP 156
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504   92 rMGELALRGFSCTVFTFGQTGSGKTYTLTGPPPQGEGVPVPPSLAGIMQRTFAWLLDRVQHLGAPVT-------LRASYL 164
Cdd:PLN03188   157 -LVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHAdrqlkyqCRCSFL 235
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  165 EIYNEQVRDLLSlGSPRPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGLSRRRSSAHTLNQASSRSHALLTLYISH 244
Cdd:PLN03188   236 EIYNEQITDLLD-PSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVES 314
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  245 QTAQQmppVDPGAPCVGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLDPQR--KQSHIPFRDSKL 322
Cdd:PLN03188   315 RCKSV---ADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQtgKQRHIPYRDSRL 391
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  323 TKLLADSLGGRGVTLMVACVSPSAQCLPETLSTLRYASRAQRVTTRpqapkspvAKQPQRLETEMLQLQEENRRLQFQLD 402
Cdd:PLN03188   392 TFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNK--------AVVNEVMQDDVNFLREVIRQLRDELQ 463
                          410       420       430
                   ....*....|....*....|....*....|....
gi 1622871504  403 QMDCKTSGLSGARVA----WAQRNLYGMLQEFML 432
Cdd:PLN03188   464 RVKANGNNPTNPNVAystaWNARRSLNLLKSFGL 497
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
25-363 1.26e-57

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 197.34  E-value: 1.26e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  25 PIQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVS-PPGGGPEVAFRFGAVLDAACTQEDVFR---ACGVRRMgelaLRG 100
Cdd:cd01376     1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELAdPRNHGETLKYQFDAFYGEESTQEDIYArevQPIVPHL----LEG 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 101 FSCTVFTFGQTGSGKTYTLTGPPPQgegvpvppslAGIMQRTFAWLLDRVQHLGAPVTLRASYLEIYNEQVRDLLSlGSP 180
Cdd:cd01376    77 QNATVFAYGSTGAGKTFTMLGSPEQ----------PGLMPLTVMDLLQMTRKEAWALSFTMSYLEIYQEKILDLLE-PAS 145
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 181 RPLPVRWNKTQGFYVEQLRVVEFRSLEALMELLQMGlSRRRSSAHT-LNQASSRSHALLTlyISHQTAQQMPPVDPgapc 259
Cdd:cd01376   146 KELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPA-SKNRTVAATrLNDNSSRSHAVLL--IKVDQRERLAPFRQ---- 218
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 260 VGGKLCFVDLAGSEKVAATGSRGELMLEANSINRSLLALGHCISLLLdpqRKQSHIPFRDSKLTKLLADSLGGRGVTLMV 339
Cdd:cd01376   219 RTGKLNLIDLAGSEDNRRTGNEGIRLKESGAINSSLFVLSKVVNALN---KNLPRIPYRDSKLTRLLQDSLGGGSRCIMV 295
                         330       340
                  ....*....|....*....|....
gi 1622871504 340 ACVSPSAQCLPETLSTLRYASRAQ 363
Cdd:cd01376   296 ANIAPERTFYQDTLSTLNFAARSR 319
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
26-175 2.54e-07

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 50.30  E-value: 2.54e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  26 IQVVLRVRPMSAAELRRGQQNVLHCSGTRTLQVSPpgggpevaFRFGAVLDAACTQEDVFRACGVrrMGELALRGFSCTV 105
Cdd:pfam16796  22 IRVFARVRPELLSEAQIDYPDETSSDGKIGSKNKS--------FSFDRVFPPESEQEDVFQEISQ--LVQSCLDGYNVCI 91
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622871504 106 FTFGQTGSGKTytltgpppqgegvpvppslAGIMQRTFAWLLDRVQHL--GAPVTLRASYLEIYNEQVRDLL 175
Cdd:pfam16796  92 FAYGQTGSGSN-------------------DGMIPRAREQIFRFISSLkkGWKYTIELQFVEIYNESSQDLL 144
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
381-477 4.00e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 40.14  E-value: 4.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504 381 QRLETEMLQLQEENRRLQFQLDQMdcktsgLSGARVAWAQRnlygmLQEFMLENERLRKEKSQLQNSQDLARNEQRILAQ 460
Cdd:COG4717   159 RELEEELEELEAELAELQEELEEL------LEQLSLATEEE-----LQDLAEELEELQQRLAELEEELEEAQEELEELEE 227
                          90
                  ....*....|....*..
gi 1622871504 461 QVHALERRLLSASYRHQ 477
Cdd:COG4717   228 ELEQLENELEAAALEER 244
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
378-469 4.46e-03

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 40.43  E-value: 4.46e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871504  378 KQPQRLETEMLQLQEENRRLQFQLDQMDCKTSGLSGARVAWAQRNLYGMLQEFMLEN---------ERLRKEKSQLQNSQ 448
Cdd:TIGR02168  316 RQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESrleeleeqlETLRSKVAQLELQI 395
                           90       100
                   ....*....|....*....|.
gi 1622871504  449 DLARNEQRILAQQVHALERRL 469
Cdd:TIGR02168  396 ASLNNEIERLEARLERLEDRR 416
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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