|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1346-2209 |
5.59e-26 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 117.46 E-value: 5.59e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1346 RASKRQSEKEMEELHHN---IDDLLQEkksLECEVEELHRTVQKRQQQKDfidgnVESLMTELEIEKSLKHHEDIVDEIE 1422
Cdd:TIGR02168 171 KERRKETERKLERTRENldrLEDILNE---LERQLKSLERQAEKAERYKE-----LKAELRELELALLVLRLEELREELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1423 CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLLQ 1502
Cdd:TIGR02168 243 ELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1503 ADAKDLEQHKIKQEEILKEinkivaaedsdfqclskkkekLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAEL 1582
Cdd:TIGR02168 323 AQLEELESKLDELAEELAE---------------------LEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1583 EKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKALRLGETevaekcNHIKEVKSLLEELSFQKGELNVQ 1662
Cdd:TIGR02168 382 ETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE------AELKELQAELEELEEELEELQEE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1663 ISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQK---------VSEL----EKT 1729
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQsglsgilgvLSELisvdEGY 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1730 QVAVLEEKLELEnlQQI----AQQQKGEIEWQKQ----------LLERNKREIERMTAESRALQSCVECLSKEKEDLQEK 1795
Cdd:TIGR02168 536 EAAIEAALGGRL--QAVvvenLNAAKKAIAFLKQnelgrvtflpLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPK 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1796 CDIWEKKLAQtkRVLAAAEENSKMEQSNLEKLELNVRKLQQELdqLNRDKLSLHNDISAIQQQLQEKQEavnslqeeLAN 1875
Cdd:TIGR02168 614 LRKALSYLLG--GVLVVDDLDNALELAKKLRPGYRIVTLDGDL--VRPGGVITGGSAKTNSSILERRRE--------IEE 681
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1876 VQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQK 1955
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1956 ERESEESKLE---TSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEE----ERWGESLEKTLSQTKRELS 2028
Cdd:TIGR02168 762 EIEELEERLEeaeEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEaanlRERLESLERRIAATERRLE 841
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2029 EREQQLVEKSGELLALQKEadsmRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKnlleqkqenscMQKEMATI 2108
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAE----IEELEELIEELESELEALLNERASLEEALALLRSELEE-----------LSEELREL 906
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2109 ELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKD--LERRQMEISDAMrtlksEVKDEIRTSLKNLNQFLPELPADL 2186
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQErlSEEYSLTLEEAE-----ALENKIEDDEEEARRRLKRLENKI 981
|
890 900
....*....|....*....|...
gi 1622871293 2187 EAILERNENLEGELESLKENFPF 2209
Cdd:TIGR02168 982 KELGPVNLAAIEEYEELKERYDF 1004
|
|
| PPP1R42 |
cd21340 |
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ... |
105-261 |
2.58e-23 |
|
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.
Pssm-ID: 411060 [Multi-domain] Cd Length: 220 Bit Score: 100.63 E-value: 2.58e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 105 LSLSkdgGKKFKYIENLEKCIKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHI 184
Cdd:cd21340 7 LYLN---DKNITKIDNLSLCKNLKVLYLYDNKITKIENLEFLTNLTHLYLQNNQIEKIENLENLVNLKKLYLGGNRISVV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 185 -------------------PvwLGKKL-----------KSLRVLNLKGNKISSLQDISKLKPLQDLI------------- 221
Cdd:cd21340 84 eglenltnleelhienqrlP--PGEKLtfdprslaalsNSLRVLNISGNNIDSLEPLAPLRNLEQLDasnnqisdleell 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1622871293 222 ----------SLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQ 261
Cdd:cd21340 162 dllsswpslrELDLTGNPVCKKPKYRDKIILASKSLEVLDGKEITDTERQ 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
435-1058 |
1.63e-21 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 102.71 E-value: 1.63e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLKKISEAgkdllykQLSGRLQLVNKLRQEALD 514
Cdd:COG1196 244 LEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELA-------RLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 515 LELQMEKQKQEIAEKQKEIKDLQIAIdsldskdpkhshmKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKD 594
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEEL-------------EEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 595 LEQQLTEGQIAANEALKKDLEgvisglqeylgtIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEivamdaENMR 674
Cdd:COG1196 384 LAEELLEALRAAAELAAQLEE------------LEEAEEALLERLERLEEELEELEEALAELEEEEEEEE------EALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 675 KELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLkEELEKVTRLTQLEQSALQAELEKERQALKNA 754
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARL-LLLLEAEADYEGFLEGVKAALLLAGLRGLAG 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 755 LGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLV--RPEEVAARVDELRRKLKLGAGEMNIHSP 832
Cdd:COG1196 525 AVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAtfLPLDKIRARAALAAALARGAIGAAVDLV 604
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 833 SDVLGKSLADLQKQFSEILAHSQWERNEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARINFDKRQHEARIQQL 912
Cdd:COG1196 605 ASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEEL 684
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 913 ENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQFFGLDKELKKLKKAVATSDKLATA 992
Cdd:COG1196 685 AERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEE 764
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 993 ---ELTIAKDQLKSLhGTVmkiNQERAEELQEA-ERFSRKAAQAArDLTRAEAEIELL-QNLLRQKEEQFR 1058
Cdd:COG1196 765 lerELERLEREIEAL-GPV---NLLAIEEYEELeERYDFLSEQRE-DLEEARETLEEAiEEIDRETRERFL 830
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1327-2081 |
2.27e-21 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 102.44 E-value: 2.27e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1327 RLEDIMQHLKSKQQE-ERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL 1405
Cdd:TIGR02168 190 RLEDILNELERQLKSlERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKL 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1406 EiEKSLKHHEDiVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQ 1485
Cdd:TIGR02168 270 E-ELRLEVSEL-EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1486 ETAINLVKAHQELRLLQADAKDLEQHKIKQEEIL-------KEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEmaE 1558
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLetlrskvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE--E 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1559 RSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLqKALRLGETEVAEK 1638
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL-DSLERLQENLEGF 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1639 CNHIKEVKSLLEELSFQKGELNVQIS-----ERKTQLTLIKQEIEKEEENLQIVLRQ---MSKHKTELKNILDMLQLENN 1710
Cdd:TIGR02168 505 SEGVKALLKNQSGLSGILGVLSELISvdegyEAAIEAALGGRLQAVVVENLNAAKKAiafLKQNELGRVTFLPLDSIKGT 584
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1711 ELQGLKLQHDQKV-------SELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERN------------------- 1764
Cdd:TIGR02168 585 EIQGNDREILKNIegflgvaKDLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYrivtldgdlvrpggvitgg 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1765 -----------KREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRK 1833
Cdd:TIGR02168 665 saktnssilerRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1834 LQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWAN 1913
Cdd:TIGR02168 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE 824
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1914 RFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLET---SKVTLKEQQHQLEKELTDQKSKLD 1990
Cdd:TIGR02168 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEEALALLRSELEELSEELR 904
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1991 QVLSKVLAAEERVRILQEEErwgESLEKTLSQTKRELSEREQQLVEKSGELLALQKEadsmradfslLRNQFLTERKKAE 2070
Cdd:TIGR02168 905 ELESKRSELRRELEELREKL---AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA----------LENKIEDDEEEAR 971
|
810
....*....|.
gi 1622871293 2071 KQVASLKEALK 2081
Cdd:TIGR02168 972 RRLKRLENKIK 982
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-345 |
2.07e-20 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 96.54 E-value: 2.07e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCIKLEVLNLSYNLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQ 172
Cdd:COG4886 134 NLTNLKELDLS-----NNQLTDLpEPLGNLTNLKSLDLSNNQLTDLpEELGNLTNLKELDLSNNQITDLpEPLGNLTNLE 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 173 KLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQDISKLKPLQdliSLILVENPVVTLPHYLQFTifHLRSLeSLEG 252
Cdd:COG4886 209 ELDLSGNQLTDLPEPLA-NLTNLETLDLSNNQLTDLPELGNLTNLE---ELDLSNNQLTDLPPLANLT--NLKTL-DLSN 281
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 253 QPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKN 332
Cdd:COG4886 282 NQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLNLLSL 361
|
250
....*....|...
gi 1622871293 333 ELLKQKTIELTRA 345
Cdd:COG4886 362 LLTLLLTLGLLGL 374
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
443-1097 |
4.67e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 94.62 E-value: 4.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 443 EKKISAAQTRLSELHDEIEKAEQQIlrateefKQLEEavqlkkisEAGKDLLYKQLSGRLQL--VNKLRQEALDLELQME 520
Cdd:COG1196 178 ERKLEATEENLERLEDILGELERQL-------EPLER--------QAEKAERYRELKEELKEleAELLLLKLRELEAELE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 521 KQKQEIAEKQKEIKDLQIAIDSLDSKdpkHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLT 600
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAE---LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 601 EgqiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEivamdaENMRKELAEL 680
Cdd:COG1196 320 E-----LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE------EELEELAEEL 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 681 ESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEkvtrltqlEQSALQAELEKERQALknalgkaqf 760
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE--------EEEEEEEALEEAAEEE--------- 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 761 sEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHvvdglvrpeevaarvDELRRKLKLGAGEMNIHSPSDVLGKSL 840
Cdd:COG1196 452 -AELEEEEEALLELLAELLEEAALLEAALAELLEELAE---------------AAARLLLLLEAEADYEGFLEGVKAALL 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 841 ADLQKQFSEILA-HSQWERNEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARINF---------DKRQHEARIQ 910
Cdd:COG1196 516 LAGLRGLAGAVAvLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlpldkirarAALAAALARG 595
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 911 QLENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQFFGLDKELKKLKKAVATSDKLA 990
Cdd:COG1196 596 AIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 991 TAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFRLEMEKTGVGTGS 1070
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE 755
|
650 660
....*....|....*....|....*..
gi 1622871293 1071 NSQVLEIEKLKETMERQRIEIARLQNV 1097
Cdd:COG1196 756 LPEPPDLEELERELERLEREIEALGPV 782
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
435-1133 |
1.91e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.81 E-value: 1.91e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLKKISEAGKDLLYKQLSGRLQlvnKLRQEALD 514
Cdd:TIGR02168 258 LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLE---ELESKLDE 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 515 LELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKhshMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKD 594
Cdd:TIGR02168 335 LAEELAELEEKLEELKEELESLEAELEELEAELEE---LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 595 LEQQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMR 674
Cdd:TIGR02168 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 675 KELAELESALQEQHEVNASLQQTQGDLSA--------------YEAELEARLNLR-------------DTEASQLKEELE 727
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGilgvlselisvdegYEAAIEAALGGRlqavvvenlnaakKAIAFLKQNELG 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 728 KVTRLtQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKL----------KHLQDDNNLLKQQLKDFqnhLN 797
Cdd:TIGR02168 572 RVTFL-PLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvDDLDNALELAKKLRPGY---RI 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 798 HVVDG-LVRPE---------------EVAARVDELRRKLKLGAGEMNIhspsdvLGKSLADLQKQFSEIlahsQWERNEA 861
Cdd:TIGR02168 648 VTLDGdLVRPGgvitggsaktnssilERRREIEELEEKIEELEEKIAE------LEKALAELRKELEEL----EEELEQL 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 862 QVRERKLQEEMALQQEKLATGQEEFRQACERAleARINFDKRQHEARIQQLENEIHYLQENLKSMEEIQGLTDLQLQEAD 941
Cdd:TIGR02168 718 RKELEELSRQISALRKDLARLEAEVEQLEERI--AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 942 EEKERILAQLRELEKKKKLEDAKSQEQFFGLDKELKKLKKAVATSDKLAtAELTIAKDQLKSLHGTVMKINQERAEELQE 1021
Cdd:TIGR02168 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE-EQIEELSEDIESLAAEIEELEELIEELESE 874
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1022 AERFSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFR-LEMEKTGVGTGSNSQVLEIEKLKetMERQRIeIARLQNVLDL 1100
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELRELESKRSeLRRELEELREKLAQLELRLEGLE--VRIDNL-QERLSEEYSL 951
|
730 740 750
....*....|....*....|....*....|...
gi 1622871293 1101 TGTDSKGGFENVLEEIAELRREVSYQNDYISSM 1133
Cdd:TIGR02168 952 TLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
55-250 |
4.72e-18 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 89.22 E-value: 4.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 55 QVEIADENNMLLDYQDHKGADSHAGVRYITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCIKLEVLNLSY 134
Cdd:COG4886 43 LSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNEELSNLTNLESLDLSG 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 135 NLIGKI-EKLDKLLKLRELNLSYNKISKI-EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQD-I 211
Cdd:COG4886 123 NQLTDLpEELANLTNLKELDLSNNQLTDLpEPLGNLTNLKSLDLSNNQLTDLPEELG-NLTNLKELDLSNNQITDLPEpL 201
|
170 180 190
....*....|....*....|....*....|....*....
gi 1622871293 212 SKLKPLQdliSLILVENPVVTLPHylqfTIFHLRSLESL 250
Cdd:COG4886 202 GNLTNLE---ELDLSGNQLTDLPE----PLANLTNLETL 233
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1829-2099 |
1.14e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.83 E-value: 1.14e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1829 LNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLhttkhqdVLLSEQTRLQKDI 1908
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEY-------ELLAELARLEQDI 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1909 SEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSK 1988
Cdd:COG1196 305 ARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1989 LDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADfsllRNQFLTERKK 2068
Cdd:COG1196 385 AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEE----EAELEEEEEA 460
|
250 260 270
....*....|....*....|....*....|.
gi 1622871293 2069 AEKQVASLKEALKIQRSQLEKNLLEQKQENS 2099
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAA 491
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1821-2097 |
1.23e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.45 E-value: 1.23e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1821 QSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSE 1900
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1901 QTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLEtskvTLKEQQHQLEK 1980
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELE----ELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1981 ELTDQKSKLDQVLSKVLAAEERVRILQEEErwgESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRAdfslLRN 2060
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEEL---EELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE----LLA 466
|
250 260 270
....*....|....*....|....*....|....*..
gi 1622871293 2061 QFLTERKKAEKQVASLKEALKIQRSQLEKNLLEQKQE 2097
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1753-2036 |
1.79e-15 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 83.06 E-value: 1.79e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1753 EIEWQKQLLERNKR--EIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELN 1830
Cdd:COG1196 217 ELKEELKELEAELLllKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1831 VRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISE 1910
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1911 WANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLD 1990
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA----ELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1622871293 1991 QVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVE 2036
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1536-2253 |
4.35e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 82.03 E-value: 4.35e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1536 LSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQG 1615
Cdd:TIGR02168 198 LERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1616 SMVQAKADLQKALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEiekeeenlqivLRQMSKHK 1695
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE-----------LAELEEKL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1696 TELKNILDMLQLENNELQGLKLQHDQKVSELEKtqvAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAES 1775
Cdd:TIGR02168 347 EELKEELESLEAELEELEAELEELESRLEELEE---QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1776 RALQScvECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNdisaI 1855
Cdd:TIGR02168 424 EELLK--KLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER----L 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1856 QQQLQEKQEAVNSLQEELANVQDHLNLAkQDLLHTTKHQDVLLSE--QTRLQKDISEWANRFEDC---QKEEETKQQQLQ 1930
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGILGVL-SELISVDEGYEAAIEAalGGRLQAVVVENLNAAKKAiafLKQNELGRVTFL 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1931 VLQS----EIEENKLKLVQQEMIFQRLQKERESEESKLE-------------TSKVTLKEQQHQLEKE----------LT 1983
Cdd:TIGR02168 577 PLDSikgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvDDLDNALELAKKLRPGyrivtldgdlVR 656
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1984 DQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL 2063
Cdd:TIGR02168 657 PGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2064 TERKKAEkQVASLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQ 2143
Cdd:TIGR02168 737 RLEAEVE-QLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2144 KDLERRQMEISDAMRTLKSEVKDEIRtslknlnqflpELPADLEAILERNENLEGELESLKEnfpftinegpFEEKLNFS 2223
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLE-----------DLEEQIEELSEDIESLAAEIEELEE----------LIEELESE 874
|
730 740 750
....*....|....*....|....*....|
gi 1622871293 2224 QVHIMDEHWRGEALREKLRHREDRLKAQLR 2253
Cdd:TIGR02168 875 LEALLNERASLEEALALLRSELEELSEELR 904
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1319-1983 |
1.35e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 1.35e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1319 HNLENEVSRLEDIMQHLKSKQQE--ERWMRASKRQSEKEMEELHHN--IDDLLQEKKSLECEVEELHRTVQKRQQQKDFI 1394
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEElqKELYALANEISRLEQQKQILRerLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1395 DGNVESLMTELEIEKSLkhHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTE 1474
Cdd:TIGR02168 343 EEKLEELKEELESLEAE--LEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1475 SDAEELERRAQETAINLVKAH-----QELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKK---EKLTEE 1546
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAEleeleEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdslERLQEN 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1547 LQKLQKDV--EMAERSEDH-HLQVLKES-----------ETLLQAKRAEL-----EKLKSQVTSQQQE------MAVLDR 1601
Cdd:TIGR02168 501 LEGFSEGVkaLLKNQSGLSgILGVLSELisvdegyeaaiEAALGGRLQAVvvenlNAAKKAIAFLKQNelgrvtFLPLDS 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1602 QLGYKKEELHLLQ-----------GSMVQAKADLQKAL--RLGETEVAEKCNHIKEVKSLLEE----------------- 1651
Cdd:TIGR02168 581 IKGTEIQGNDREIlkniegflgvaKDLVKFDPKLRKALsyLLGGVLVVDDLDNALELAKKLRPgyrivtldgdlvrpggv 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1652 LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQV 1731
Cdd:TIGR02168 661 ITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA 740
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1732 AVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLA 1811
Cdd:TIGR02168 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1812 AAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTT 1891
Cdd:TIGR02168 821 NLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELS 900
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1892 KHQDVLLSEQTRLQKDISEwanrfedCQKEEETKQQQLQVLQSEIEENKLKLVQQemiFQRLQKERESEESKLETSKVTL 1971
Cdd:TIGR02168 901 EELRELESKRSELRRELEE-------LREKLAQLELRLEGLEVRIDNLQERLSEE---YSLTLEEAEALENKIEDDEEEA 970
|
730
....*....|..
gi 1622871293 1972 KEQQHQLEKELT 1983
Cdd:TIGR02168 971 RRRLKRLENKIK 982
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1321-2196 |
4.36e-14 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 78.55 E-value: 4.36e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1321 LENEVSRLEDIMQHLKSKQQEERWMRASKRQSEKEMEELHH---NIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGN 1397
Cdd:TIGR00606 212 LKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNrlkEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1398 VESLM--TELEIEKSLKHHEDIVDEIE----CIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFT--DAKRS 1469
Cdd:TIGR00606 292 MEKVFqgTDEQLNDLYHNHQRTVREKErelvDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRarDSLIQ 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1470 LLQTESDAEELER-----RAQETAINLVKAHQElRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLT 1544
Cdd:TIGR00606 372 SLATRLELDGFERgpfseRQIKNFHTLVIERQE-DEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1545 EELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRaELEKLKSQVTSQQQEMAVLdrqlgykkeelhllqgSMVQAKADL 1624
Cdd:TIGR00606 451 KKQEELKFVIKELQQLEGSSDRILELDQELRKAER-ELSKAEKNSLTETLKKEVK----------------SLQNEKADL 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1625 QKALRLGETEVAEKcNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDM 1704
Cdd:TIGR00606 514 DRKLRKLDQEMEQL-NHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDR 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1705 LQLENNELQGLKLQHDQKVSELEKTQvAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVEC 1784
Cdd:TIGR00606 593 LAKLNKELASLEQNKNHINNELESKE-EQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQ 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1785 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQE 1864
Cdd:TIGR00606 672 LTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRN 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1865 AVNSLQEELANVQDhlNLAKQDLLHTTKHQDVLLSEQtrLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLV 1944
Cdd:TIGR00606 752 KLQKVNRDIQRLKN--DIEEQETLLGTIMPEEESAKV--CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQV 827
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1945 QQEMifQRLQKERESEESKLETSKVTLKEQQHQLEKeltdQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTK 2024
Cdd:TIGR00606 828 NQEK--QEKQHELDTVVSKIELNRKLIQDQQEQIQH----LKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLI 901
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2025 RELSEREQQLVEKSGELLALQKEADSmradfslLRNQFLTERKKAEKQVASLKEALK---IQRSQLEKNLLEQKqENSCM 2101
Cdd:TIGR00606 902 REIKDAKEQDSPLETFLEKDQQEKEE-------LISSKETSNKKAQDKVNDIKEKVKnihGYMKDIENKIQDGK-DDYLK 973
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2102 QKEMATIELVAQ--DNHERARRLMKELNQMQYEYTELKKQ---MANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLN 2176
Cdd:TIGR00606 974 QKETELNTVNAQleECEKHQEKINEDMRLMRQDIDTQKIQerwLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMK 1053
|
890 900
....*....|....*....|
gi 1622871293 2177 QFLPELPADLEAIlERNENL 2196
Cdd:TIGR00606 1054 QEHQKLEENIDLI-KRNHVL 1072
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
255-1044 |
4.63e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 4.63e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 255 VTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNEL 334
Cdd:TIGR02168 294 ANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 335 LKQKTIELTRACQKQYELEQELAfyKIDAKFEplnyypseYAEIDKapdespyigkSRYKRNMFATESYIIDNAQAIQIK 414
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIA--SLNNEIE--------RLEARL----------ERLEDRRERLQQEIEELLKKLEEA 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 415 KMEPDEqlrndhvnlRGHAPLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAV--------QLKKI 486
Cdd:TIGR02168 434 ELKELQ---------AELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLdslerlqeNLEGF 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 487 SEAGKDLLYKQ--LSGRLQLVNKLRQEALDLELQMEKQKQEIAEkQKEIKDLQIA---IDSLDSKDPKHSHMKAQKRGKE 561
Cdd:TIGR02168 505 SEGVKALLKNQsgLSGILGVLSELISVDEGYEAAIEAALGGRLQ-AVVVENLNAAkkaIAFLKQNELGRVTFLPLDSIKG 583
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 562 QQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQL-------TEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQ 634
Cdd:TIGR02168 584 TEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLlggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITG 663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 635 AQNEcrklqdEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEqhevnasLQQTQGDLSAYEAELEARLNL 714
Cdd:TIGR02168 664 GSAK------TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEEELEQLRKELEELSRQISA 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 715 RDTEASQLKEELEKVTRLTQLEQSALqAELEKERQALKNALGKAQFS-EEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 793
Cdd:TIGR02168 731 LRKDLARLEAEVEQLEERIAQLSKEL-TELEAEIEELEERLEEAEEElAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 794 NHLNhvvdglvrpeEVAARVDELRRKLKlgagemNIHSPSDVLGKSLADLQKQFSEILAhsQWERNEAQVRErkLQEEMA 873
Cdd:TIGR02168 810 AELT----------LLNEEAANLRERLE------SLERRIAATERRLEDLEEQIEELSE--DIESLAAEIEE--LEELIE 869
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 874 LQQEKLATGQEEFRQACERALEARINFDKRQHEarIQQLENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRE 953
Cdd:TIGR02168 870 ELESELEALLNERASLEEALALLRSELEELSEE--LRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 954 lEKKKKLEDAKSQEQffgldkelkklkkAVATSDKLATAELTIAKDQLKSLhGTVmkiNQERAEELQE-AERFSRKAAQA 1032
Cdd:TIGR02168 948 -EYSLTLEEAEALEN-------------KIEDDEEEARRRLKRLENKIKEL-GPV---NLAAIEEYEElKERYDFLTAQK 1009
|
810
....*....|..
gi 1622871293 1033 ArDLTRAEAEIE 1044
Cdd:TIGR02168 1010 E-DLTEAKETLE 1020
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
583-963 |
1.39e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 77.02 E-value: 1.39e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 583 SRIAKETEEIKDLEQQLTEGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQER 660
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKEleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 661 DQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYEA---ELEARLNLRDTEASQLKEELEKVT-RLTQL 735
Cdd:TIGR02168 757 TELEAEIEELEERLEEAeEELAEAEAEIEELEAQIEQLKEELKALREaldELRAELTLLNEEAANLRERLESLErRIAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 736 EQSALQAELEKERQALKNALGKAQFSEEKEQENsELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVDE 815
Cdd:TIGR02168 837 ERRLEDLEEQIEELSEDIESLAAEIEELEELIE-ELESELEALLNERASLEEALALLRSELEELSEEL---RELESKRSE 912
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 816 LRRKLklgagemnihspsdvlgksladlqKQFSEILAHSQWERNEAQVRERKLQEEMALQQEKLATGQEEfrqaceraLE 895
Cdd:TIGR02168 913 LRREL------------------------EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEA--------LE 960
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 896 ARINFDKRQHEARIQQLENEIHYLQE-NLKSMEEiqgltdlqLQEADEEKERILAQLRELEK-KKKLEDA 963
Cdd:TIGR02168 961 NKIEDDEEEARRRLKRLENKIKELGPvNLAAIEE--------YEELKERYDFLTAQKEDLTEaKETLEEA 1022
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1349-1984 |
1.65e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 1.65e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1349 KRQSEKEMEELHHN---IDDLLQEK----KSLE--CEVEELHRTVQKRQQQKDfidgnveSLMTELEIEKSLKHHEDIVD 1419
Cdd:COG1196 174 KEEAERKLEATEENlerLEDILGELerqlEPLErqAEKAERYRELKEELKELE-------AELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1420 EIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELR 1499
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELA 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1500 LLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKR 1579
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1580 AELEKLKSQVTSQQQEMAVLDRQLgykkeelhllqgsmvQAKADLQKALRLGETEVAEKcnhIKEVKSLLEELSFQKGEL 1659
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEAL---------------AELEEEEEEEEEALEEAAEE---EAELEEEEEALLELLAEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1660 NVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLE 1739
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAL 548
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1740 LENLQQIAQQQKGEIEWQKQ-------LLERNKREIERMTAESRALQScVECLSKEKEDLQEKCDIWEKKLAQTKRVLAA 1812
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAakagratFLPLDKIRARAALAAALARGA-IGAAVDLVASDLREADARYYVLGDTLLGRTL 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1813 AEENSKMEQSNLEKLELNVRKLQQELDQLNRDK----LSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLL 1888
Cdd:COG1196 628 VAARLEAALRRAVTLAGRLREVTLEGEGGSAGGsltgGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEER 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1889 HTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERES--------- 1959
Cdd:COG1196 708 ELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAlgpvnllai 787
|
650 660
....*....|....*....|....*.
gi 1622871293 1960 -EESKLETSKVTLKEQQHQLEKELTD 1984
Cdd:COG1196 788 eEYEELEERYDFLSEQREDLEEARET 813
|
|
| LRR_9 |
pfam14580 |
Leucine-rich repeat; |
130-279 |
1.75e-13 |
|
Leucine-rich repeat;
Pssm-ID: 405295 [Multi-domain] Cd Length: 175 Bit Score: 70.56 E-value: 1.75e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 130 LNLSYNLIGKIEKLDKLL-KLRELNLSYNKISKIEGIENMCNLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL 208
Cdd:pfam14580 24 LDLRGYKIPIIENLGATLdQFDTIDFSDNEIRKLDGFPLLRRLKTLLLNNNRICRIGEGLGEALPNLTELILTNNNLQEL 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 209 QDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDL 279
Cdd:pfam14580 104 GDLDPLASLKKLTFLSLLRNPVTNKPHYRLYVIYKVPQLRLLDFRKVKQKERQAAEKMFRSKQGKQLAKEI 174
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1665-2205 |
3.27e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 75.74 E-value: 3.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1665 ERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQvavleeKLELENLQ 1744
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQ------AEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1745 QIAQQQKGEIEwQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNL 1824
Cdd:COG1196 296 ELARLEQDIAR-LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1825 EKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRL 1904
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1905 QKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKL-VQQEMIFQRLQKERESEESKL------------------- 1964
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLlLLLEAEADYEGFLEGVKAALLlaglrglagavavligvea 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1965 -------------------ETSKVTLKEQQHQLEKEL---------TDQKSKLDQVLSKVLAAEERVRILQEEERWGESL 2016
Cdd:COG1196 535 ayeaaleaalaaalqnivvEDDEVAAAAIEYLKAAKAgratflpldKIRARAALAAALARGAIGAAVDLVASDLREADAR 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2017 EKTLSQTKRE-------LSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEK 2089
Cdd:COG1196 615 YYVLGDTLLGrtlvaarLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELE 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2090 NLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKdEIR 2169
Cdd:COG1196 695 LEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELE-RLE 773
|
570 580 590
....*....|....*....|....*....|....*.
gi 1622871293 2170 TSLKNLNQFLPELPADLEAILERNENLEGELESLKE 2205
Cdd:COG1196 774 REIEALGPVNLLAIEEYEELEERYDFLSEQREDLEE 809
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1320-2034 |
3.41e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.49 E-value: 3.41e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1320 NLENEVSRLEDIMQHLKSKQQEerwMRASKRQSEKEMEELHHNIDDL-------LQEK-KSLECEVEELHRTVQKRQQQK 1391
Cdd:TIGR02169 241 AIERQLASLEEELEKLTEEISE---LEKRLEEIEQLLEELNKKIKDLgeeeqlrVKEKiGELEAEIASLERSIAEKEREL 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1392 DFIDGnvESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLL 1471
Cdd:TIGR02169 318 EDAEE--RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1472 QTESDAEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQ 1551
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1552 KDvemaersedhhLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKAL--- 1628
Cdd:TIGR02169 476 EE-----------YDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIeva 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1629 ---RLG-----ETEVAEKC-NHIKEVKslLEELSFQKgeLNVQISERKTQLTLIKQEIEKEEENL--------------- 1684
Cdd:TIGR02169 545 agnRLNnvvveDDAVAKEAiELLKRRK--AGRATFLP--LNKMRDERRDLSILSEDGVIGFAVDLvefdpkyepafkyvf 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1685 --QIVLRQMSKHKtELKNILDMLQLENNELQ----------GLKLQHDQKVSELEKTQvAVLEEKLELENLQQIAQQQKG 1752
Cdd:TIGR02169 621 gdTLVVEDIEAAR-RLMGKYRMVTLEGELFEksgamtggsrAPRGGILFSRSEPAELQ-RLRERLEGLKRELSSLQSELR 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1753 EIEwqkQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVR 1832
Cdd:TIGR02169 699 RIE---NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1833 KLQQELDQLNRDKLslhndisaiQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWA 1912
Cdd:TIGR02169 776 KLEEALNDLEARLS---------HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLK 846
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1913 NRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERE---SEESKLETSKVTLKEQQHQLEKELTDQKSKL 1989
Cdd:TIGR02169 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDeleAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1622871293 1990 DQVLSKVLAAEERVRILQEEERWGESLEKtLSQTKRELSEREQQL 2034
Cdd:TIGR02169 927 EALEEELSEIEDPKGEDEEIPEEELSLED-VQAELQRVEEEIRAL 970
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1338-2166 |
5.80e-13 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 75.08 E-value: 5.80e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1338 KQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEkSLKHHEDI 1417
Cdd:TIGR00606 310 HQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELD-GFERGPFS 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1418 VDEIECIEKTLLKRRS-ELREADRLLAEAESELSCTKEktknAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQ 1496
Cdd:TIGR00606 389 ERQIKNFHTLVIERQEdEAKTAAQLCADLQSKERLKQE----QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQ 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1497 ELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAERseDHHLQVLKESETLLQ 1576
Cdd:TIGR00606 465 QLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQL--NHHTTTRTQMEMLTK 542
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1577 AKRAELEKLKSQVTSQQQEMAVLDRQLGYKK---EELHLLQGSMVQAKADLQKaLRLGETEVAEKCNHI-KEVKSLLEEL 1652
Cdd:TIGR00606 543 DKMDKDEQIRKIKSRHSDELTSLLGYFPNKKqleDWLHSKSKEINQTRDRLAK-LNKELASLEQNKNHInNELESKEEQL 621
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1653 SFQKGELNVQISERKTQLTLIKQEIEKEEENLQivlRQMSKHKTEL-KNILDMLQLENNELQGLKLQHDQKVSELE---- 1727
Cdd:TIGR00606 622 SSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQ---RAMLAGATAVySQFITQLTDENQSCCPVCQRVFQTEAELQefis 698
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1728 KTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTK 1807
Cdd:TIGR00606 699 DLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM 778
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1808 RVLAAAEE---NSKMEQSNLEKLELNVRKLQQELDQLnrDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAK 1884
Cdd:TIGR00606 779 PEEESAKVcltDVTIMERFQMELKDVERKIAQQAAKL--QGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQ 856
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1885 QDLLHTTKHQDVLLSEQTRlqkdISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKL 1964
Cdd:TIGR00606 857 EQIQHLKSKTNELKSEKLQ----IGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1965 ETSKvtlkeqqHQLEKELTDQKSKLDQVLSKVLAAEERVRilQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLAL 2044
Cdd:TIGR00606 933 ETSN-------KKAQDKVNDIKEKVKNIHGYMKDIENKIQ--DGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLM 1003
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2045 QKEADSMRADFSLLRNQFltERKKAEKQVASLKEALKIQRSQL-EKNLLEQKQENSCMQKEMATIelvaQDNHERARRLM 2123
Cdd:TIGR00606 1004 RQDIDTQKIQERWLQDNL--TLRKRENELKEVEEELKQHLKEMgQMQVLQMKQEHQKLEENIDLI----KRNHVLALGRQ 1077
|
810 820 830 840
....*....|....*....|....*....|....*....|...
gi 1622871293 2124 KELNQmQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKD 2166
Cdd:TIGR00606 1078 KGYEK-EIKHFKKELREPQFRDAEEKYREMMIVMRTTELVNKD 1119
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
443-1123 |
6.44e-13 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 74.57 E-value: 6.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 443 EKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLKKiseagkdlLYKQLSGRLQlvnklRQEALDLELQMEKQ 522
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERAHEALEDAREQIELLEPIRELAE--------RYAAARERLA-----ELEYLRAALRLWFA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 523 KQEIAEKQKEIKDLQIAIDSLDskdpkhshmkAQKRGKEQQLDimnkqykQLESRLDEILSRIAK-ETEEIKDLEQqlte 601
Cdd:COG4913 287 QRRLELLEAELEELRAELARLE----------AELERLEARLD-------ALREELDELEAQIRGnGGDRLEQLER---- 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 602 gQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNE----CRKLQDEKETLLQRLTEVEQERDQLEIvamDAENMRKEL 677
Cdd:COG4913 346 -EIERLERELEERERRRARLEALLAALGLPLPASAEEfaalRAEAAALLEALEEELEALEEALAEAEA---ALRDLRREL 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 678 AELESALqeqhevnASLQQTQGDLSAYE----AELEARLNLRDTEAS------QLKEE-------LEKV---TRLTQLeq 737
Cdd:COG4913 422 RELEAEI-------ASLERRKSNIPARLlalrDALAEALGLDEAELPfvgeliEVRPEeerwrgaIERVlggFALTLL-- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 738 salqAELEKERQALK--NAL---GKAQFSEEKEQENSELHAKLkhlqDDNNLL-KQQLKD--FQNHLNHVvdgLVRPEEV 809
Cdd:COG4913 493 ----VPPEHYAAALRwvNRLhlrGRLVYERVRTGLPDPERPRL----DPDSLAgKLDFKPhpFRAWLEAE---LGRRFDY 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 810 A--ARVDELRR-----------KLKLGAGEMNIHSPSD---VLGKS----LADLQKQfseiLAHSQWERNEAQVRERKLQ 869
Cdd:COG4913 562 VcvDSPEELRRhpraitragqvKGNGTRHEKDDRRRIRsryVLGFDnrakLAALEAE----LAELEEELAEAEERLEALE 637
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 870 EEMALQQEKLATgqeefRQACERALEARInfDKRQHEARIQQLENEihyLQENLKSMEEIQGLTDlQLQEADEEKERILA 949
Cdd:COG4913 638 AELDALQERREA-----LQRLAEYSWDEI--DVASAEREIAELEAE---LERLDASSDDLAALEE-QLEELEAELEELEE 706
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 950 QLRELEKK-----KKLEDAKSQEQffgldkelkklkkavATSDKLATAELTIAKDQLKSLhgtvmkinQERAEELQEAER 1024
Cdd:COG4913 707 ELDELKGEigrleKELEQAEEELD---------------ELQDRLEAAEDLARLELRALL--------EERFAAALGDAV 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1025 FSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFRLE--MEKTGVGTG--SNSQVLEI-EKLKET-MERQRIEIARLQNvl 1098
Cdd:COG4913 764 ERELRENLEERIDALRARLNRAEEELERAMRAFNREwpAETADLDADleSLPEYLALlDRLEEDgLPEYEERFKELLN-- 841
|
730 740
....*....|....*....|....*
gi 1622871293 1099 dltgTDSKGGFENVLEEIAELRREV 1123
Cdd:COG4913 842 ----ENSIEFVADLLSKLRRAIREI 862
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1477-2076 |
8.22e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 8.22e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1477 AEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEM 1556
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1557 AERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKALRLGETEVA 1636
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1637 EkcnhikevkslLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLK 1716
Cdd:COG1196 380 E-----------LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1717 LQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRAlqscveclSKEKEDLQEKC 1796
Cdd:COG1196 449 EEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG--------VKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1797 DIWEKK--LAQTKRVLAAAEENSkMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELA 1874
Cdd:COG1196 521 GLAGAVavLIGVEAAYEAALEAA-LAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1875 NVQDHLNLAKQDLLHTTKHQDVLLSEqtrlqkdiSEWANRFEDCQKEEETKQQQLQVLQSEIEEnklkLVQQEMIFQRLQ 1954
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGR--------TLVAARLEAALRRAVTLAGRLREVTLEGEG----GSAGGSLTGGSR 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1955 KERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQvlskvlAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQL 2034
Cdd:COG1196 668 RELLAALLEAEAELEELAERLAEEELELEEALLAEEE------EERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 1622871293 2035 VEKSGELLALQKEADSMRADFSLLRnqflTERKKAEKQVASL 2076
Cdd:COG1196 742 LEEEELLEEEALEELPEPPDLEELE----RELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1706-2081 |
1.08e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 1.08e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1706 QLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECL 1785
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1786 SKEKEDLQEKcdiwekklaqtkrvLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEA 1865
Cdd:COG1196 301 EQDIARLEER--------------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1866 VNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENklklvq 1945
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE------ 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1946 qemifQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEErwgESLEKTLSQTKR 2025
Cdd:COG1196 441 -----EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE---ADYEGFLEGVKA 512
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 2026 ELSEREQQLVEKSGELLA---LQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALK 2081
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIgveAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKA 571
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1342-2154 |
2.51e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 72.84 E-value: 2.51e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1342 ERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEIEKSLKHH--EDIVD 1419
Cdd:pfam15921 91 QRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDmlEDSNT 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1420 EIECIEKTLLKRRSELREADRLLAEaeselsctkektknavekFTDAKRSLLQTESDAEELERRAQETAINLVkahqeLR 1499
Cdd:pfam15921 171 QIEQLRKMMLSHEGVLQEIRSILVD------------------FEEASGKKIYEHDSMSTMHFRSLGSAISKI-----LR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1500 LLQADAKDLEqhkikqeeilkeiNKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEmaersedhhlQVLKESETLLQAKR 1579
Cdd:pfam15921 228 ELDTEISYLK-------------GRIFPVEDQLEALKSESQNKIELLLQQHQDRIE----------QLISEHEVEITGLT 284
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1580 AELEKLKSQVTSQQQEMAVLDRQLGYKKE----ELHLLQGSMVQAKADLQKALRLGETEVaekcnhikevksllEELSFQ 1655
Cdd:pfam15921 285 EKASSARSQANSIQSQLEIIQEQARNQNSmymrQLSDLESTVSQLRSELREAKRMYEDKI--------------EELEKQ 350
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1656 KGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKnildmLQLENNEL-----QGLKLQHDQKVSELEKTQ 1730
Cdd:pfam15921 351 LVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELS-----LEKEQNKRlwdrdTGNSITIDHLRRELDDRN 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1731 VAVLEEKLELENLQQIAQqqkGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVL 1810
Cdd:pfam15921 426 MEVQRLEALLKAMKSECQ---GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLT 502
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1811 AAAEENSK-MEQSNLE--KLELNVRKLQQELDQLNRDKLSLHN---DISAIQQQLQEKQEAVNSLQEELANVQdhlnlak 1884
Cdd:pfam15921 503 ASLQEKERaIEATNAEitKLRSRVDLKLQELQHLKNEGDHLRNvqtECEALKLQMAEKDKVIEILRQQIENMT------- 575
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1885 QDLLHTTKHQDVLLSEQTRLQKDISEWA---NRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMifQRLQKEREsee 1961
Cdd:pfam15921 576 QLVGQHGRTAGAMQVEKAQLEKEINDRRlelQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGS--ERLRAVKD--- 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1962 skletskvtLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEE-ERWGESLEKTLSQTKRELSEREQQLVEKSGE 2040
Cdd:pfam15921 651 ---------IKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEmETTTNKLKMQLKSAQSELEQTRNTLKSMEGS 721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2041 -------LLALQKEADSMRADFSLLRN--QFLTE-RKKAEKQVASLKEalkiqrsqlEKNLLEQKQENSCMQKEMATIEL 2110
Cdd:pfam15921 722 dghamkvAMGMQKQITAKRGQIDALQSkiQFLEEaMTNANKEKHFLKE---------EKNKLSQELSTVATEKNKMAGEL 792
|
810 820 830 840
....*....|....*....|....*....|....*....|....
gi 1622871293 2111 VAQDNHEraRRLMKELNQMQYEYTELKKQMANQKDLERRQMEIS 2154
Cdd:pfam15921 793 EVLRSQE--RRLKEKVANMEVALDKASLQFAECQDIIQRQEQES 834
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1353-2124 |
3.91e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 72.02 E-value: 3.91e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1353 EKEMEELHHNIDDLLQEKKSLECEVEELHR--TVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTLLK 1430
Cdd:TIGR02169 183 EENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISE 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1431 RRSELREADRLLAEAESELSCTKEKTKNAV-EKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLLQADAKDLE 1509
Cdd:TIGR02169 263 LEKRLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1510 QhkikqeeilkeinkivaaedsDFQCLSKKKEKLTEELQKLqKDVEMAERSEdhhlqvLKESETLLQAKRAELEKLKSQV 1589
Cdd:TIGR02169 343 R---------------------EIEEERKRRDKLTEEYAEL-KEELEDLRAE------LEEVDKEFAETRDELKDYREKL 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1590 TSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKA---LRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISER 1666
Cdd:TIGR02169 395 EKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIeakINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1667 KTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVleEKLELENLQQI 1746
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAI--EVAAGNRLNNV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1747 AQQQKGEIEWQKQLLERnkREIERMT----AESRALQSCVECLSKEKE-----DLQEKCDIWEKKLAQ------------ 1805
Cdd:TIGR02169 553 VVEDDAVAKEAIELLKR--RKAGRATflplNKMRDERRDLSILSEDGVigfavDLVEFDPKYEPAFKYvfgdtlvvedie 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1806 TKRVLAAAEENSKMEQSNLEK-------------LELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEE 1872
Cdd:TIGR02169 631 AARRLMGKYRMVTLEGELFEKsgamtggsraprgGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1873 LANvqdhlnlAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEM---- 1948
Cdd:TIGR02169 711 LSD-------ASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEalnd 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1949 IFQRLQKER----ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQ----EEERWGESLEKTL 2020
Cdd:TIGR02169 784 LEARLSHSRipeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKeqikSIEKEIENLNGKK 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2021 SQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLR---NQFLTERKKAEKQVASLKEALKIQRSQLeKNLLEQKQE 2097
Cdd:TIGR02169 864 EELEEELEELEAALRDLESRLGDLKKERDELEAQLRELErkiEELEAQIEKKRKRLSELKAKLEALEEEL-SEIEDPKGE 942
|
810 820
....*....|....*....|....*..
gi 1622871293 2098 NSCMQKEMATIELVAQDNHERARRLMK 2124
Cdd:TIGR02169 943 DEEIPEEELSLEDVQAELQRVEEEIRA 969
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
83-250 |
4.59e-12 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 70.73 E-value: 4.59e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 83 ITEALIKKLTKQDNLALIKSLNLSLSKDGGKKFKYIENLEKCIKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNkiski 162
Cdd:COG4886 32 LLLLALLLLSLLSLLLLLTLLLSLLLRDLLLSSLLLLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGN----- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 163 EGIENMCNLQKLNLAGNEIEHIPVWLGkKLKSLRVLNLKGNKISSLQdiSKLKPLQDLISLILVENPVVTLPHylqfTIF 242
Cdd:COG4886 107 EELSNLTNLESLDLSGNQLTDLPEELA-NLTNLKELDLSNNQLTDLP--EPLGNLTNLKSLDLSNNQLTDLPE----ELG 179
|
....*...
gi 1622871293 243 HLRSLESL 250
Cdd:COG4886 180 NLTNLKEL 187
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
245-1097 |
1.26e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.47 E-value: 1.26e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 245 RSLESLEGQPVTTQDRQEAferfsLEEVERLERDLEKKMIEtEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQScEEL 324
Cdd:TIGR02168 200 RQLKSLERQAEKAERYKEL-----KAELRELELALLVLRLE-ELREELEELQEELKEAEEELEELTAELQELEEKL-EEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 325 KSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKidAKFEPLNYYPSEYAEidkapdespYIGKSRYKRNMFATESyi 404
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILR--ERLANLERQLEELEA---------QLEELESKLDELAEEL-- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 405 idNAQAIQIKKMEPD-EQLRNDHVNLRGHAP-LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQ 482
Cdd:TIGR02168 340 --AELEEKLEELKEElESLEAELEELEAELEeLESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 483 ---------LKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHM 553
Cdd:TIGR02168 418 rlqqeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 554 KAQKRGKEQQLDIMNKQYKQLESRLDEILSRI--------AKETEEIKDLEQQLTEGQIAANEA---LKKDLEGVISGLQ 622
Cdd:TIGR02168 498 QENLEGFSEGVKALLKNQSGLSGILGVLSELIsvdegyeaAIEAALGGRLQAVVVENLNAAKKAiafLKQNELGRVTFLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 623 eyLGTIKGQATQAQNECRKLQdeKETLLQRLTEVEQERDQLEIV-------------AMDAENMRKELAELESAL-QEQH 688
Cdd:TIGR02168 578 --LDSIKGTEIQGNDREILKN--IEGFLGVAKDLVKFDPKLRKAlsyllggvlvvddLDNALELAKKLRPGYRIVtLDGD 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 689 EVNASLQQTQGDLSAYEAELEarlnlRDTEASQLKEELEkvtrltqlEQSALQAELEKERQALKNALgkaqfsEEKEQEN 768
Cdd:TIGR02168 654 LVRPGGVITGGSAKTNSSILE-----RRREIEELEEKIE--------ELEEKIAELEKALAELRKEL------EELEEEL 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 769 SELHAKLKHLQDDNNLLKQQLKDFQNhlnhvvdglvRPEEVAARVDELRRKLKLGAGEMNihspsdvlgKSLADLQKQFS 848
Cdd:TIGR02168 715 EQLRKELEELSRQISALRKDLARLEA----------EVEQLEERIAQLSKELTELEAEIE---------ELEERLEEAEE 775
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 849 EILAHSQwERNEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARinFDKRQHEARIQQLENEIHYLQENLKSMEE 928
Cdd:TIGR02168 776 ELAEAEA-EIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLR--ERLESLERRIAATERRLEDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 929 IQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEqffgldkelkklkkavatsdklataeltiAKDQLKSLHGTV 1008
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALAL-----------------------------LRSELEELSEEL 903
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1009 MKINQERAEELQEAERFSRKAAQAARDLTRAEAEIellQNLLRQKEEQFRLEMEktGVGTGSNSQVLEIEKLKETMERQR 1088
Cdd:TIGR02168 904 RELESKRSELRRELEELREKLAQLELRLEGLEVRI---DNLQERLSEEYSLTLE--EAEALENKIEDDEEEARRRLKRLE 978
|
....*....
gi 1622871293 1089 IEIARLQNV 1097
Cdd:TIGR02168 979 NKIKELGPV 987
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1317-1875 |
1.83e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 1.83e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1317 EHHNLENEVSRLEDIMQHLKSKQQEERwmrASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFidg 1396
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELE---AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIAR--- 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1397 nveslmTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESD 1476
Cdd:COG1196 307 ------LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1477 AEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEM 1556
Cdd:COG1196 381 LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1557 AERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQ-----KALRLG 1631
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLigveaAYEAAL 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1632 ETEVAEKCNHIkeVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSK---HKTELKNILDMLQLE 1708
Cdd:COG1196 541 EAALAAALQNI--VVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAvdlVASDLREADARYYVL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1709 NNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKE 1788
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1789 KEDLQEKcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKqeaVNS 1868
Cdd:COG1196 699 LLAEEEE----ERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE---LER 771
|
....*..
gi 1622871293 1869 LQEELAN 1875
Cdd:COG1196 772 LEREIEA 778
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
437-1076 |
1.91e-11 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.17 E-value: 1.91e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 437 RQLEDKEKKISAAQTRLSELHDEIEKAEQqiLRATEEFKQLEEAVQLKKISEAGKDLLYKQlSGRLQLVNKLRQEALDLE 516
Cdd:PTZ00121 1164 RKAEEARKAEDAKKAEAARKAEEVRKAEE--LRKAEDARKAEAARKAEEERKAEEARKAED-AKKAEAVKKAEEAKKDAE 1240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 517 LQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPK-HSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDL 595
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFARRQAAIKaEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEA 1320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 596 EQQLTEGQIAANEALKKDLEGvisglQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMD------ 669
Cdd:PTZ00121 1321 KKKAEEAKKKADAAKKKAEEA-----KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEkkkade 1395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 670 ----AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQLEQSALQA-EL 744
Cdd:PTZ00121 1396 akkkAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAdEA 1475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 745 EKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHV-----VDGLVRPEEVAaRVDELRRK 819
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAeeakkADEAKKAEEKK-KADELKKA 1554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 820 LKLGAGEMNIHSPSDVLGKSLADLQKQFSEILAHSQWERNEAQVRERKLQEEMALQQEKLAT----------GQEEFRQA 889
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEeakikaeelkKAEEEKKK 1634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 890 CERALEARINFDKRQHEARIQQLENEIHYLQENLKSMEEIQGLTDLQLQEaDEEKERILAQLRELEKKKKLEDAKSQEQf 969
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE-EDEKKAAEALKKEAEEAKKAEELKKKEA- 1712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 970 fgldkelkkLKKAVATSDKLATAELTIAKDQLKSLHgtvmKINQERAEELQEAERFSRKAAQAARDLTRAEAEIE----- 1044
Cdd:PTZ00121 1713 ---------EEKKKAEELKKAEEENKIKAEEAKKEA----EEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRkekea 1779
|
650 660 670
....*....|....*....|....*....|..
gi 1622871293 1045 LLQNLLRQKEEQFRLEMEKTGVGTGSNSQVLE 1076
Cdd:PTZ00121 1780 VIEEELDEEDEKRRMEVDKKIKDIFDNFANII 1811
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1469-1794 |
1.94e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 1.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1469 SLLQTESDAEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQ 1548
Cdd:TIGR02168 671 SILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1549 KLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQ---GSMVQAKADLQ 1625
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNeeaANLRERLESLE 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1626 KALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDML 1705
Cdd:TIGR02168 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKR 910
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1706 QLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQ--------QKGEIEWQKQLLERNKREIERM------ 1771
Cdd:TIGR02168 911 SELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeaealenkIEDDEEEARRRLKRLENKIKELgpvnla 990
|
330 340
....*....|....*....|....
gi 1622871293 1772 -TAESRALQSCVECLSKEKEDLQE 1794
Cdd:TIGR02168 991 aIEEYEELKERYDFLTAQKEDLTE 1014
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1635-2004 |
3.28e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.33 E-value: 3.28e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1635 VAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLtlikqEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQg 1714
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQL-----ERLRREREKAERYQALLKEKREYEGYELLKEKEALERQ- 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1715 lKLQHDQKVSELEKTQvavleeklelENLQQIAQQQKGEIEWQKQLLERNKREIERMTA-ESRALQSCVECLSKEKEDLq 1793
Cdd:TIGR02169 239 -KEAIERQLASLEEEL----------EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASL- 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1794 ekcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEEL 1873
Cdd:TIGR02169 307 ------ERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1874 ANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRL 1953
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 1954 QKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVR 2004
Cdd:TIGR02169 461 AADLSKYEQELY----DLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
270-824 |
5.75e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.42 E-value: 5.75e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:COG1196 246 AELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 350 YELEQELAfykidakfeplnyypSEYAEIDKAPDEspyigksrykrnmfatesyIIDNAQAIQIKKMEPDEQLRNDHVNL 429
Cdd:COG1196 326 AELEEELE---------------ELEEELEELEEE-------------------LEEAEEELEEAEAELAEAEEALLEAE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 430 RGHAPLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAV----QLKKISEAGKDLLYKQLSGRLQLV 505
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELeeleEALAELEEEEEEEEEALEEAAEEE 451
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 506 NKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSK----------------DPKHSHMKAQKRGKEQQLDIM-- 567
Cdd:COG1196 452 AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARllllleaeadyegfleGVKAALLLAGLRGLAGAVAVLig 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 568 --NKQYKQLESRLDEILSRIAKETEEI-KDLEQQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQD 644
Cdd:COG1196 532 veAAYEAALEAALAAALQNIVVEDDEVaAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 645 EKETLLQRLTEVEQERDQlEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKE 724
Cdd:COG1196 612 DARYYVLGDTLLGRTLVA-ARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 725 ELEKVTRLTQLEQSALQAELEKERQALKNalgKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDfqnhlnhVVDGLV 804
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEE---ELEEEALEEQLEAEREELLEELLEEEELLEEEALE-------ELPEPP 760
|
570 580
....*....|....*....|.
gi 1622871293 805 RPEEVAARVDELRRKLK-LGA 824
Cdd:COG1196 761 DLEELERELERLEREIEaLGP 781
|
|
| LRR |
COG4886 |
Leucine-rich repeat (LRR) protein [Transcription]; |
96-280 |
6.32e-11 |
|
Leucine-rich repeat (LRR) protein [Transcription];
Pssm-ID: 443914 [Multi-domain] Cd Length: 414 Bit Score: 66.88 E-value: 6.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 96 NLALIKSLNLSlskdgGKKFKYI-ENLEKCIKLEVLNLSYNLIGKIEKLDKLLKLRELNLSYNKISKIEGIENMCNLQKL 174
Cdd:COG4886 203 NLTNLEELDLS-----GNQLTDLpEPLANLTNLETLDLSNNQLTDLPELGNLTNLEELDLSNNQLTDLPPLANLTNLKTL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 175 NLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSLQDISKLKPLQDLISLILVENPVVTLPHYLQFTIFHLRSLESLEGQP 254
Cdd:COG4886 278 DLSNNQLTDLKLKELELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLLN 357
|
170 180
....*....|....*....|....*.
gi 1622871293 255 VTTQDRQEAFERFSLEEVERLERDLE 280
Cdd:COG4886 358 LLSLLLTLLLTLGLLGLLEATLLTLA 383
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1319-2098 |
7.20e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 68.07 E-value: 7.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1319 HNLENEVSRLEDIMQHLKSKQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQQKDFIDGNV 1398
Cdd:pfam02463 229 LDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQ-EEELKLLAKEEEELKSELLKLER 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1399 ESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADR-LLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDA 1477
Cdd:pfam02463 308 RKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIkREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLS 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1478 EELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMA 1557
Cdd:pfam02463 388 SAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELEL 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1558 ERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQ--KALRLGETEV 1635
Cdd:pfam02463 468 KKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGvaVENYKVAIST 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1636 AEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGL 1715
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEG 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1716 KLQHDQKVSELEKtqvavleekLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEK 1795
Cdd:pfam02463 628 ILKDTELTKLKES---------AKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQ 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1796 CDIWEKKLAQTKRvlaaaeenskMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELAN 1875
Cdd:pfam02463 699 LEIKKKEQREKEE----------LKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1876 VQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQK 1955
Cdd:pfam02463 769 LSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKL 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1956 ERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLV 2035
Cdd:pfam02463 849 EKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAE 928
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622871293 2036 EKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLEQKQEN 2098
Cdd:pfam02463 929 ILLKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYN 991
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1536-2115 |
1.48e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 66.67 E-value: 1.48e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1536 LSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQG 1615
Cdd:pfam05483 217 LKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTK 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1616 SMVQAKADLQKALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHK 1695
Cdd:pfam05483 297 ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1696 TELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQ---IAQQQKGEIEWQKQLLERNKREIERMT 1772
Cdd:pfam05483 377 DQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQfekIAEELKGKEQELIFLLQAREKEIHDLE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1773 AESRALQSCVECLSKEKEDLqeKCDIWEKKLAQTKRVlaaaeenskmeqSNLEKLELNVRKLQQELDQLNRDKLSLHNDI 1852
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDL--KTELEKEKLKNIELT------------AHCDKLLLENKELTQEASDMTLELKKHQEDI 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1853 SAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLH-----------TTKHQDVLLSEQTRLQKDISEWANRFEDCQKE 1921
Cdd:pfam05483 523 INCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQkgdevkckldkSEENARSIEYEVLKKEKQMKILENKCNNLKKQ 602
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1922 EETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVlaaeE 2001
Cdd:pfam05483 603 IENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEV----E 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2002 RVRILQEEErwgeslektlSQTKRELSEREQQlveKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALK 2081
Cdd:pfam05483 679 KAKAIADEA----------VKLQKEIDKRCQH---KIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALE 745
|
570 580 590
....*....|....*....|....*....|....
gi 1622871293 2082 IQRSQLEKNLLEQKQENSCMQKEMATIELVAQDN 2115
Cdd:pfam05483 746 IELSNIKAELLSLKKQLEIEKEEKEKLKMEAKEN 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
431-779 |
1.76e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 66.63 E-value: 1.76e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 431 GHAPLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEE--AVQLKKISEAGKDLLYKQLSGRLQLVNKL 508
Cdd:TIGR02169 164 GVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqALLKEKREYEGYELLKEKEALERQKEAIE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 509 RQEAlDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKdpkhshmkAQKRGKEQQLdimnkqykQLESRLDEILSRIAKE 588
Cdd:TIGR02169 244 RQLA-SLEEELEKLTEEISELEKRLEEIEQLLEELNKK--------IKDLGEEEQL--------RVKEKIGELEAEIASL 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 589 TEEIKDLEQQL--TEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQE----RDQ 662
Cdd:TIGR02169 307 ERSIAEKERELedAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEfaetRDE 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 663 LEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRltQLEQsaLQA 742
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW--KLEQ--LAA 462
|
330 340 350
....*....|....*....|....*....|....*...
gi 1622871293 743 ELEKERQALKNALGK-AQFSEEKEQENSELHAKLKHLQ 779
Cdd:TIGR02169 463 DLSKYEQELYDLKEEyDRVEKELSKLQRELAEAEAQAR 500
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1800-2033 |
5.12e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.01 E-value: 5.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDH 1879
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1880 LN--LAKQDLLHTTKHQDVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEEnklklvqqemiFQRLQKER 1957
Cdd:COG4942 106 LAelLRALYRLGRQPPLALLLS-----PEDFLDAVRRLQYLKYLAPARREQAEELRADLAE-----------LAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 1958 ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEErwgESLEKTLSQTKRELSEREQQ 2033
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEA---EELEALIARLEAEAAAAAER 242
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1324-2138 |
6.46e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.99 E-value: 6.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1324 EVSRLEDIMQHLKSKQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEV------------EELHRTVQKRQQQK 1391
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEyllyldylklneERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1392 DFIDGNVESLMTELEI-EKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSL 1470
Cdd:pfam02463 251 EEIESSKQEIEKEEEKlAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1471 LQTESDAEELERRAQE----TAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEE 1546
Cdd:pfam02463 331 KKEKEEIEELEKELKEleikREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1547 LQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQK 1626
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLL 490
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1627 ALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRqmskHKTELKNILDMLQ 1706
Cdd:pfam02463 491 SRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEV----SATADEVEERQKL 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1707 LENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLS 1786
Cdd:pfam02463 567 VRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKES 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1787 KEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAV 1866
Cdd:pfam02463 647 GLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADR 726
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1867 NSLQEELANVQdhLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQ 1946
Cdd:pfam02463 727 VQEAQDKINEE--LKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELR 804
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1947 EMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRE 2026
Cdd:pfam02463 805 ALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 884
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2027 LSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEK------QVASLKEALKIQRSQLEKNLLEQKQENSC 2100
Cdd:pfam02463 885 KDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEIllkyeeEPEELLLEEADEKEKEENNKEEEEERNKR 964
|
810 820 830 840
....*....|....*....|....*....|....*....|....*
gi 1622871293 2101 MQKEMATIELV-------AQDNHERARRLMKELNQMQYEYTELKK 2138
Cdd:pfam02463 965 LLLAKEELGKVnlmaieeFEEKEERYNKDELEKERLEEEKKKLIR 1009
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
629-966 |
8.90e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 8.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 629 KGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKEL-AELESALQEQHEVNASLQQTQGDLSAYE-- 705
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKERLEELEEDLSSLEqe 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 706 --------AELEARLNLRDTEASQLKEELEKVTRLTQLEQ----SALQAELEKERQALKNALGKAQFSEEKEQENSE-LH 772
Cdd:TIGR02169 753 ienvkselKELEARIEELEEDLHKLEEALNDLEARLSHSRipeiQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEyLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 773 AKLKHLQDDNNLLKQQLKDFQNhlnhvvdglvRPEEVAARVDELRRKLKLGAGEMNihspsdVLGKSLADLQKQFSEILA 852
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIKSIEK----------EIENLNGKKEELEEELEELEAALR------DLESRLGDLKKERDELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 853 H---SQWERNEAQVRERKLQEEMALQQEKLATGQEEfrqacERALEARINFDKR--QHEARIQQLENEIHYLQENLKSME 927
Cdd:TIGR02169 897 QlreLERKIEELEAQIEKKRKRLSELKAKLEALEEE-----LSEIEDPKGEDEEipEEELSLEDVQAELQRVEEEIRALE 971
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 1622871293 928 EIQGLtdlqlqeADEEKERILAQLRELEKKK-KLEDAKSQ 966
Cdd:TIGR02169 972 PVNML-------AIQEYEEVLKRLDELKEKRaKLEEERKA 1004
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1357-2199 |
9.06e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 64.61 E-value: 9.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1357 EELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDgnveslmteleiekslkhheDIVDEIECIEKTLLKRRSELR 1436
Cdd:pfam02463 152 PERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELII--------------------DLEELKLQELKLKEQAKKALE 211
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1437 EADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQ- 1515
Cdd:pfam02463 212 YYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLl 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1516 EEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESEtllqAKRAELEKLKSQVTSQQQE 1595
Cdd:pfam02463 292 AKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELE----IKREAEEEEEEELEKLQEK 367
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1596 MAVLDRQLGYKKEElhllqgsmvqAKADLQKALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQ 1675
Cdd:pfam02463 368 LEQLEEELLAKKKL----------ESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEE 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1676 EIEKEEENLQIV---LRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKG 1752
Cdd:pfam02463 438 SIELKQGKLTEEkeeLEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIK 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1753 EIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVR 1832
Cdd:pfam02463 518 DGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1833 KLQQELDQLNRDKlslhndiSAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWA 1912
Cdd:pfam02463 598 EIDPILNLAQLDK-------ATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSE 670
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1913 NRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKldqV 1992
Cdd:pfam02463 671 LTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKID---E 747
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1993 LSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADfSLLRNQFLTERKKAEKQ 2072
Cdd:pfam02463 748 EEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEE-LKEEAELLEEEQLLIEQ 826
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2073 VASLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQME 2152
Cdd:pfam02463 827 EEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEES 906
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 1622871293 2153 ISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGE 2199
Cdd:pfam02463 907 QKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEEN 953
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1800-2165 |
9.28e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 9.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNR------------------DKLSLHNDISAIQQQLQE 1861
Cdd:TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERyqallkekreyegyellkEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1862 KQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS-EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIeenk 1940
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL---- 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1941 lklvqqemifQRLQKERESEESKLEtskvtlkeqqhQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEerwGESLEKTL 2020
Cdd:TIGR02169 325 ----------AKLEAEIDKLLAEIE-----------ELEREIEEERKRRDKLTEEYAELKEELEDLRAE---LEEVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2021 SQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEaLKIQRSQLEKNLLEQKQENSC 2100
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINE-LEEEKEDKALEIKKQEWKLEQ 459
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622871293 2101 MQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQmanQKDLERRQMEISDAMRTLKSEVK 2165
Cdd:TIGR02169 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQ---ARASEERVRGGRAVEEVLKASIQ 521
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
510-757 |
1.36e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 62.47 E-value: 1.36e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 510 QEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLdskdpkhshmKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKET 589
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL----------LKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 590 EEIKDLEQQLtegqiaanEALKKDLEGVI-----SGLQEYLGTIKGQ--ATQAQNECRKLQDEKETLLQRLTEVEQERDQ 662
Cdd:COG4942 90 KEIAELRAEL--------EAQKEELAELLralyrLGRQPPLALLLSPedFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 663 LEIVAMDAENMRKELAELESALQEQHevnASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRL-TQLEQSALQ 741
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER---AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALiARLEAEAAA 238
|
250
....*....|....*.
gi 1622871293 742 AELEKERQALKNALGK 757
Cdd:COG4942 239 AAERTPAAGFAALKGK 254
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1354-2195 |
3.65e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 62.47 E-value: 3.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1354 KEMEEL--HHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESL----MTELEIEKSLKHHEDIVDEIECIEKT 1427
Cdd:PTZ00121 1027 EKIEELteYGNNDDVLKEKDIIDEDIDGNHEGKAEAKAHVGQDEGLKPSYkdfdFDAKEDNRADEATEEAFGKAEEAKKT 1106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1428 LLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSllqTESDAEELERRAQET-AINLVKAHQELRLLQADAK 1506
Cdd:PTZ00121 1107 ETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKA---EDAKRVEIARKAEDArKAEEARKAEDAKKAEAARK 1183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1507 DLEQHKIKQEEILKEINKIVAAEDSDfqclskkKEKLTEELQKLQ--KDVEMAERSEdhhlQVLKESEtllQAKRAELEK 1584
Cdd:PTZ00121 1184 AEEVRKAEELRKAEDARKAEAARKAE-------EERKAEEARKAEdaKKAEAVKKAE----EAKKDAE---EAKKAEEER 1249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1585 LKSQVTSQQQEMAV--LDRQLGYKKEELHllQGSMVQAKADLQKALRLGETEVAEKCNHIK----------EVKSLLEEL 1652
Cdd:PTZ00121 1250 NNEEIRKFEEARMAhfARRQAAIKAEEAR--KADELKKAEEKKKADEAKKAEEKKKADEAKkkaeeakkadEAKKKAEEA 1327
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1653 SFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMS---KHKTELKNILDMLQ------LENNELQGLKLQHDQKV 1723
Cdd:PTZ00121 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEaaeKKKEEAKKKADAAKkkaeekKKADEAKKKAEEDKKKA 1407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1724 SELEKTQVAVLEEKLELENLQQI--AQQQKGEIEWQKQLLERNKREIERMTAES---RALQSCVECLSKEKEDLQEKCDI 1798
Cdd:PTZ00121 1408 DELKKAAAAKKKADEAKKKAEEKkkADEAKKKAEEAKKADEAKKKAEEAKKAEEakkKAEEAKKADEAKKKAEEAKKADE 1487
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1799 WEKKLAQTKRvlaAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQ----EELA 1874
Cdd:PTZ00121 1488 AKKKAEEAKK---KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEElkkaEEKK 1564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1875 NVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDI----SEWANRFEDCQKEEETKQQQLQVLQSEIEEnklKLVQQEMIF 1950
Cdd:PTZ00121 1565 KAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMklyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEK---KKVEQLKKK 1641
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1951 QRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSER 2030
Cdd:PTZ00121 1642 EAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEEL 1721
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2031 EQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLE--KNLLEQKQENSCMQKEMATI 2108
Cdd:PTZ00121 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAviEEELDEEDEKRRMEVDKKIK 1801
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2109 ELvaQDNHERARRLMKE----LNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPA 2184
Cdd:PTZ00121 1802 DI--FDNFANIIEGGKEgnlvINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKED 1879
|
890
....*....|.
gi 1622871293 2185 DLEAILERNEN 2195
Cdd:PTZ00121 1880 DEEEIEEADEI 1890
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1351-1995 |
4.39e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.96 E-value: 4.39e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1351 QSEKEMEELHHNIDDLLQEKKSLECEVEELhrtvqkRQQQKDFID-GNVESLMTELEIEKSLKHHEDIVDEIECI---EK 1426
Cdd:TIGR04523 51 NKEKELKNLDKNLNKDEEKINNSNNKIKIL------EQQIKDLNDkLKKNKDKINKLNSDLSKINSEIKNDKEQKnklEV 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1427 TLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLLQADAK 1506
Cdd:TIGR04523 125 ELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLS 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1507 DLEQHKIKQEEILKEINKIvaaeDSDFQCLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLK 1586
Cdd:TIGR04523 205 NLKKKIQKNKSLESQISEL----KKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNN 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1587 SQVTSqqqemavLDRQLGYKKEELHLLQGsmvQAKADLQKALRlgetevaekcNHIKEVKSLLEELSFQKGELNVQISER 1666
Cdd:TIGR04523 281 KKIKE-------LEKQLNQLKSEISDLNN---QKEQDWNKELK----------SELKNQEKKLEEIQNQISQNNKIISQL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1667 KTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQI 1746
Cdd:TIGR04523 341 NEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQE 420
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1747 AQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLaqtkrvlaaaeensKMEQSNLEK 1826
Cdd:TIGR04523 421 KELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI--------------NKIKQNLEQ 486
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1827 LELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDL--LHTTKHQDVLLSEQTRL 1904
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELnkDDFELKKENLEKEIDEK 566
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1905 QKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERES---EESKLETSKVTLKEQQHQLEKE 1981
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKakkENEKLSSIIKNIKSKKNKLKQE 646
|
650
....*....|....
gi 1622871293 1982 LTDQKSKLDQVLSK 1995
Cdd:TIGR04523 647 VKQIKETIKEIRNK 660
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
414-955 |
5.09e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 61.99 E-value: 5.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 414 KKMEPDEQLRNDH-------VNLRGHAPLDRQLED----KEKKISAAQTRLSELHDEIEKAEQ-------QILRATEEFK 475
Cdd:TIGR00606 543 DKMDKDEQIRKIKsrhsdelTSLLGYFPNKKQLEDwlhsKSKEINQTRDRLAKLNKELASLEQnknhinnELESKEEQLS 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 476 QLEEAV------------------QLKKISE-----AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEK-QK 531
Cdd:TIGR00606 623 SYEDKLfdvcgsqdeesdlerlkeEIEKSSKqramlAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDlQS 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 532 EIKDLQIAIDSLDS----KDPKHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLteGQIAAN 607
Cdd:TIGR00606 703 KLRLAPDKLKSTESelkkKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL--GTIMPE 780
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 608 EALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQ--DEKETLLQRLTEVEQERDQLEIVAMDAENMRKelaelesALQ 685
Cdd:TIGR00606 781 EESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQgsDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK-------LIQ 853
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 686 EQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVtrltqleQSALQAELEKERQALKNALGKAQFSEEKE 765
Cdd:TIGR00606 854 DQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEV-------QSLIREIKDAKEQDSPLETFLEKDQQEKE 926
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 766 QENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEvaarvDELRRKlklgagEMNIHSPSDVLGKSlADLQK 845
Cdd:TIGR00606 927 ELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD-----DYLKQK------ETELNTVNAQLEEC-EKHQE 994
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 846 QFSEILAHSQWERNEAQVRERKLQEEMALQ--QEKLATGQEEFRQaceralearinFDKRQHEARIQQLENEIHYLQENL 923
Cdd:TIGR00606 995 KINEDMRLMRQDIDTQKIQERWLQDNLTLRkrENELKEVEEELKQ-----------HLKEMGQMQVLQMKQEHQKLEENI 1063
|
570 580 590
....*....|....*....|....*....|..
gi 1622871293 924 KSMEEIQGLTDLQLQEADEEKERILAQLRELE 955
Cdd:TIGR00606 1064 DLIKRNHVLALGRQKGYEKEIKHFKKELREPQ 1095
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
1773-2098 |
6.77e-09 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 61.46 E-value: 6.77e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1773 AESRALQScVECLSKEKEDLQEKCDIWEKKLAQT-KRVLAAAEENSKME--QSNLEKLELN-----------VRKLQQEL 1838
Cdd:PLN02939 150 ARLQALED-LEKILTEKEALQGKINILEMRLSETdARIKLAAQEKIHVEilEEQLEKLRNEllirgateglcVHSLSKEL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1839 DQLNRDKLSLHNDISAIQQQLQEKQEAVNSLqeelanvqdhLNLAKQDLLHTTKHQDvLLSEQTRLQKDISEWANRFEDC 1918
Cdd:PLN02939 229 DVLKEENMLLKDDIQFLKAELIEVAETEERV----------FKLEKERSLLDASLRE-LESKFIVAQEDVSKLSPLQYDC 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1919 QKEE-ETKQQQLQVLQSEIEENKLKLVQQemifQRLQKERESEESKLETSKVTlkeqqhqlekELTDQKSKLDQvlSKVL 1997
Cdd:PLN02939 298 WWEKvENLQDLLDRATNQVEKAALVLDQN----QDLRDKVDKLEASLKEANVS----------KFSSYKVELLQ--QKLK 361
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1998 AAEERVRILQEEErwgESLEKTLSQTKRELSEREQQLVEKSGElLALQKEADSMRADF----SLLRNQFLTERKKAEKQV 2073
Cdd:PLN02939 362 LLEERLQASDHEI---HSYIQLYQESIKEFQDTLSKLKEESKK-RSLEHPADDMPSEFwsriLLLIDGWLLEKKISNNDA 437
|
330 340
....*....|....*....|....*
gi 1622871293 2074 ASLKEALKIQRSQLEKNLLEQKQEN 2098
Cdd:PLN02939 438 KLLREMVWKRDGRIREAYLSCKGKN 462
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
259-969 |
6.91e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 6.91e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 259 DRQEAFERFSLEEVERLERDLEKKmIETEELKSKqtrfLEEIKNQDKLNKSLKEEAMLqkqscEELKSDLNTKNELLKQK 338
Cdd:TIGR02169 187 ERLDLIIDEKRQQLERLRREREKA-ERYQALLKE----KREYEGYELLKEKEALERQK-----EAIERQLASLEEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 339 TIELTRACQKQYELEQELAfyKIDAKFEPLNyyPSEYAEIdKAPDESPYIGKSRYKRNMFATESYIIDNAQAIQIKKMEP 418
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLE--ELNKKIKDLG--EEEQLRV-KEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 419 DEQLRNdhvnlrgHAPLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQL-EEAVQLKKISEAGKDLLY-- 495
Cdd:TIGR02169 332 DKLLAE-------IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETrDELKDYREKLEKLKREINel 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 496 -KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSkdpKHSHMKAQKRGKEQQLDIMNKQYKQL 574
Cdd:TIGR02169 405 kRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW---KLEQLAADLSKYEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 575 ESRLDEILSRIAkETEEIKDLEQQLTEGQIAANEALKKDLEGVIsGLQEYLGTIKGQ----------------------- 631
Cdd:TIGR02169 482 EKELSKLQRELA-EAEAQARASEERVRGGRAVEEVLKASIQGVH-GTVAQLGSVGERyataievaagnrlnnvvveddav 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 632 ATQAQNECRKLQDEKETLLQrLTEVEQERDQLEIVAMDA--------------------------------ENMRKELAE 679
Cdd:TIGR02169 560 AKEAIELLKRRKAGRATFLP-LNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvediEAARRLMGK 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 680 LESALQEQHEVNASLQQTQGDLSAYEAELEARLNLrdTEASQLKEELEKVTRltqlEQSALQAELEKERQALKNALGKAQ 759
Cdd:TIGR02169 639 YRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEP--AELQRLRERLEGLKR----ELSSLQSELRRIENRLDELSQELS 712
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 760 fseEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPE----EVAARVDELRRKL-KLGAGEMNI----- 829
Cdd:TIGR02169 713 ---DASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKselkELEARIEELEEDLhKLEEALNDLearls 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 830 HSPSDVLGKSLADLQKQFSEI---LAHSQWERNEAQVRERKLQEEMALQQEKLATGQEefRQACERALEARINFDKRQHE 906
Cdd:TIGR02169 790 HSRIPEIQAELSKLEEEVSRIearLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKE--QIKSIEKEIENLNGKKEELE 867
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622871293 907 ARIQQLENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQF 969
Cdd:TIGR02169 868 EELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALE 930
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1438-2025 |
7.10e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 7.10e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1438 ADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEE 1517
Cdd:PRK03918 163 AYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1518 ILKEINKI---VAAEDSDFQCLSKKKEKLTEELQKLQ---KDVEMAERSEDHHLQVLKESETLLQAKRaELEKLKSQVTS 1591
Cdd:PRK03918 243 LEKELESLegsKRKLEEKIRELEERIEELKKEIEELEekvKELKELKEKAEEYIKLSEFYEEYLDELR-EIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1592 QQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKAlrlgeTEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKtqlt 1671
Cdd:PRK03918 322 EINGIEERIKELEEKEERLEELKKKLKELEKRLEEL-----EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE---- 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1672 likqeiekeeenlqivLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENlqqiaqqqk 1751
Cdd:PRK03918 393 ----------------LEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTE--------- 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1752 geiEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLqEKCDIWEKKLAQTKRVLAAAEE-NSKMEQSNLEKLELN 1830
Cdd:PRK03918 448 ---EHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLKELAEQLKElEEKLKKYNLEELEKK 523
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1831 ---VRKLQQELDQLNRDKLSLHNDISAIQQ---QLQEKQEAVNSLQEELANVQDHLnlakqdLLHTTKHQDVLLSEQTRL 1904
Cdd:PRK03918 524 aeeYEKLKEKLIKLKGEIKSLKKELEKLEElkkKLAELEKKLDELEEELAELLKEL------EELGFESVEELEERLKEL 597
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1905 QKDISEWaNRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKE--------RESEESKLETSKVTLKEQQH 1976
Cdd:PRK03918 598 EPFYNEY-LELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKEleelekkySEEEYEELREEYLELSRELA 676
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1622871293 1977 QLEKELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKR 2025
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1800-2206 |
8.31e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.19 E-value: 8.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDH 1879
Cdd:TIGR04523 123 EVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELL 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1880 LNLAKQdllhttkhqdvLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERES 1959
Cdd:TIGR04523 203 LSNLKK-----------KIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE 271
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1960 EESKLETSKVTLKE---QQHQLEKELTDQKSKLDQVLSKVLAAEErvrilqeeerwgESLEKTLSQTKRELSEREQQLVE 2036
Cdd:TIGR04523 272 KQKELEQNNKKIKElekQLNQLKSEISDLNNQKEQDWNKELKSEL------------KNQEKKLEEIQNQISQNNKIISQ 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2037 KSGELLALQKEADSMRADFSLLRNQF---LTERKKAEKQVASLKEA---LKIQRSQLEKNLLEQKQENSCMQKEMATIEL 2110
Cdd:TIGR04523 340 LNEQISQLKKELTNSESENSEKQRELeekQNEIEKLKKENQSYKQEiknLESQINDLESKIQNQEKLNQQKDEQIKKLQQ 419
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2111 VAQDNHERARRLMKELNQMQYEYTELKKQMANQ----KDLERRQMEISDAMRTLKSEVKdEIRTSLKNLNQFLPELPADL 2186
Cdd:TIGR04523 420 EKELLEKEIERLKETIIKNNSEIKDLTNQDSVKeliiKNLDNTRESLETQLKVLSRSIN-KIKQNLEQKQKELKSKEKEL 498
|
410 420
....*....|....*....|
gi 1622871293 2187 EAILERNENLEGELESLKEN 2206
Cdd:TIGR04523 499 KKLNEEKKELEEKVKDLTKK 518
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1809-2050 |
8.95e-09 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 59.84 E-value: 8.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1809 VLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLL 1888
Cdd:COG3883 10 TPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1889 HTTKHQ----------DVLLSeqtrlQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKlklvqqemifqRLQKERE 1958
Cdd:COG3883 90 ERARALyrsggsvsylDVLLG-----SESFSDFLDRLSALSKIADADADLLEELKADKAELE-----------AKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1959 SEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKS 2038
Cdd:COG3883 154 AKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
250
....*....|..
gi 1622871293 2039 GELLALQKEADS 2050
Cdd:COG3883 234 AAAAAAAAAAAS 245
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
437-893 |
9.94e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.55 E-value: 9.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 437 RQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALD 514
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALeaELAELPERLEELEERLEELRE 160
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 515 LELQMEKQKQEIAEKQKEIKDLqiaidsldskdpkhshMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKD 594
Cdd:COG4717 161 LEEELEELEAELAELQEELEEL----------------LEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEE 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 595 LEQQLTEGQiaaNEALKKDLEGVISGLQEYLGTIKGQATQAQnecrkLQDEKETLLQRLTEVEQERdqLEIVAMDAENMR 674
Cdd:COG4717 225 LEEELEQLE---NELEAAALEERLKEARLLLLIAAALLALLG-----LGGSLLSLILTIAGVLFLV--LGLLALLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 675 KELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKV-TRLTQLEQSALQAELEKERQALKN 753
Cdd:COG4717 295 REKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELqELLREAEELEEELQLEELEQEIAA 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 754 ALGKAQFSEEKE-QENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVrPEEVAARVDELRRKLKLGAGEMnihsp 832
Cdd:COG4717 375 LLAEAGVEDEEElRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALD-EEELEEELEELEEELEELEEEL----- 448
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 833 sDVLGKSLADLQKQFSEILAHSQWERNEAQVRERKLQ-EEMALQQEKLATGQEEFRQACERA 893
Cdd:COG4717 449 -EELREELAELEAELEQLEEDGELAELLQELEELKAElRELAEEWAALKLALELLEEAREEY 509
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1328-2013 |
1.11e-08 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 60.75 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1328 LEDIMQHLKSKQQEER---WMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFidgnveslmte 1404
Cdd:TIGR00618 224 LEKELKHLREALQQTQqshAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKA----------- 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1405 LEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRA 1484
Cdd:TIGR00618 293 APLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1485 QETAINlvkahQELRLLQAD---AKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAERSE 1561
Cdd:TIGR00618 373 QQHTLT-----QHIHTLQQQkttLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAI 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1562 DHHLQVLKESETLL----QAKRAELEKLKSQVTSQQQEM---AVLDRQLGYKKEELHLLQGSMVQAKADLQKALRLGETE 1634
Cdd:TIGR00618 448 TCTAQCEKLEKIHLqesaQSLKEREQQLQTKEQIHLQETrkkAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLT 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1635 vAEKCNHIKEVKSLLEELSFQKGELnvqISERKtQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLennelqg 1714
Cdd:TIGR00618 528 -RRMQRGEQTYAQLETSEEDVYHQL---TSERK-QRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVR------- 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1715 lkLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQllernkreiERMTAESRALQSCVECLSKEKEDLQE 1794
Cdd:TIGR00618 596 --LQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCS---------QELALKLTALHALQLTLTQERVREHA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1795 KCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELN-----VRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSL 1869
Cdd:TIGR00618 665 LSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAqcqtlLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQS 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1870 QEELANVQDHlNLAKQDLLHTTKHQDVLLSEQTRLQkdISEWANRFEDCQKEEETKQQQLQVLQSEIEENK-----LKLV 1944
Cdd:TIGR00618 745 LKELMHQART-VLKARTEAHFNNNEEVTAALQTGAE--LSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIpsdedILNL 821
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 1945 QQEMIfqrlQKERESEESKLETSKVTLKEQQHQLEkELTDQKSKLDQvlskvlAAEERVRILQEEERWG 2013
Cdd:TIGR00618 822 QCETL----VQEEEQFLSRLEEKSATLGEITHQLL-KYEECSKQLAQ------LTQEQAKIIQLSDKLN 879
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1580-1940 |
1.24e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.85 E-value: 1.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1580 AELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKALRLGETEVAEkcnHIKEVKSLLEELSFQKGEL 1659
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE---LLKEKEALERQKEAIERQL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1660 NvQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNildmlqlenNELQGLKLQHDQKVSELEKTQVAVLEEKLE 1739
Cdd:TIGR02169 247 A-SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE---------EEQLRVKEKIGELEAEIASLERSIAEKERE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1740 LENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKM 1819
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1820 EQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLlhttkhqDVLLS 1899
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-------SKYEQ 469
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 1622871293 1900 EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENK 1940
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGR 510
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1461-2252 |
1.37e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 1.37e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1461 EKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQE-LRLLQADAKDLEQHKIKQEEILKEINKIVA---AEDSDFQCL 1536
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRErEKAERYQALLKEKREYEGYELLKEKEALERqkeAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1537 SKKKEKLTEELQKLQKDVEMAErsedhhlQVLKESETLLQAK-RAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQG 1615
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIE-------QLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1616 SMVQAKADLQKALRlgetevaekcnHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHK 1695
Cdd:TIGR02169 323 RLAKLEAEIDKLLA-----------EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1696 TELknilDMLQLENNELQGlklQHDQKVSELEKTQVAVLeeklelenlqQIAQQQKGEIEWQKQLLERNKREIERMTAES 1775
Cdd:TIGR02169 392 EKL----EKLKREINELKR---ELDRLQEELQRLSEELA----------DLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1776 RALQSCVECLSKEKE---DLQEKCDIWEKKLAQTKRVLAAAEEnskmEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDI 1852
Cdd:TIGR02169 455 WKLEQLAADLSKYEQelyDLKEEYDRVEKELSKLQRELAEAEA----QARASEERVRGGRAVEEVLKASIQGVHGTVAQL 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1853 SAIQQQLQEKQE--AVNSLQ----EELANVQDHLNLAKQ------DLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQK 1920
Cdd:TIGR02169 531 GSVGERYATAIEvaAGNRLNnvvvEDDAVAKEAIELLKRrkagraTFLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDP 610
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1921 EEETKQQQlqVLQSEIEENKLKLVQQEMIFQRL---------------------------QKERESEESKLETSKVTLKE 1973
Cdd:TIGR02169 611 KYEPAFKY--VFGDTLVVEDIEAARRLMGKYRMvtlegelfeksgamtggsraprggilfSRSEPAELQRLRERLEGLKR 688
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1974 QQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEerwGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRA 2053
Cdd:TIGR02169 689 ELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE---IEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEA 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2054 DFSLLrnqflterkkaEKQVASLKEALkiqrSQLEKNLLEQKQENScmQKEMATIELVAQDNHERARRLMKELNQMQYEY 2133
Cdd:TIGR02169 766 RIEEL-----------EEDLHKLEEAL----NDLEARLSHSRIPEI--QAELSKLEEEVSRIEARLREIEQKLNRLTLEK 828
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2134 TELKKQMANqkdLERRQMEISDAMRTLKSEVkDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENFpftine 2213
Cdd:TIGR02169 829 EYLEKEIQE---LQEQRIDLKEQIKSIEKEI-ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL------ 898
|
810 820 830
....*....|....*....|....*....|....*....
gi 1622871293 2214 GPFEEKLNfsqvhimdehwRGEALREKLRHREDRLKAQL 2252
Cdd:TIGR02169 899 RELERKIE-----------ELEAQIEKKRKRLSELKAKL 926
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
438-660 |
2.32e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.62 E-value: 2.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeavqlKKISEAGKDLlyKQLSGRLqlvNKLRQEALDLEL 517
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE-----RRIAALARRI--RALEQEL---AALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 518 QMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQkrgKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQ 597
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPE---DFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 598 QLT------EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQER 660
Cdd:COG4942 168 ELEaeraelEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
1483-2194 |
2.66e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 59.68 E-value: 2.66e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1483 RAQETAINLVKAH-QELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDfQCLSKKKEKLTEELQKLQKDVEMAERSe 1561
Cdd:TIGR00606 186 KALETLRQVRQTQgQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESS-REIVKSYENELDPLKNRLKEIEHNLSK- 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1562 dhhLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHllqgsmvqakadlQKALRLGETEVAEKCNH 1641
Cdd:TIGR00606 264 ---IMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNH-------------QRTVREKERELVDCQRE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1642 IKEVKSLLEELSFQKGELNVQISERKTQltlikqeieKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQ 1721
Cdd:TIGR00606 328 LEKLNKERRLLNQEKTELLVEQGRLQLQ---------ADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1722 KVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLER---NKREI-ERMTAESRALQSCVECLSKEKEDLQEKcd 1797
Cdd:TIGR00606 399 VIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRtieLKKEIlEKKQEELKFVIKELQQLEGSSDRILEL-- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1798 iwEKKLAQTKRVLAAAEENS-----KMEQSNLEKLELNV----RKLQQELDQLNRDKLSLHNDIS--------------- 1853
Cdd:TIGR00606 477 --DQELRKAERELSKAEKNSltetlKKEVKSLQNEKADLdrklRKLDQEMEQLNHHTTTRTQMEMltkdkmdkdeqirki 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1854 -------------------AIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISE---- 1910
Cdd:TIGR00606 555 ksrhsdeltsllgyfpnkkQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDvcgs 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1911 --WANRFEDCQKEEETKQQQLQVL-------QSEIEENKLKLVQQEMIFQR-LQKERESEE--SKLETSKVTLKEQQHQL 1978
Cdd:TIGR00606 635 qdEESDLERLKEEIEKSSKQRAMLagatavySQFITQLTDENQSCCPVCQRvFQTEAELQEfiSDLQSKLRLAPDKLKST 714
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1979 EKELTDQKSKLDQVLSKVlaaEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKS---GELLALQKEADSMRADF 2055
Cdd:TIGR00606 715 ESELKKKEKRRDEMLGLA---PGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQEtllGTIMPEEESAKVCLTDV 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2056 SLLRnQFLTERKKAEKQVASLkeALKIQRSQLEKNLLEQKQENSCMQKEMATI-------ELVAQDNHERARRLMKELNQ 2128
Cdd:TIGR00606 792 TIME-RFQMELKDVERKIAQQ--AAKLQGSDLDRTVQQVNQEKQEKQHELDTVvskielnRKLIQDQQEQIQHLKSKTNE 868
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 2129 MQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEiRTSLKNLNQFLPELPADLEAILERNE 2194
Cdd:TIGR00606 869 LKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDA-KEQDSPLETFLEKDQQEKEELISSKE 933
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1530-2182 |
3.61e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 58.88 E-value: 3.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1530 DSDFQCLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEE 1609
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSE 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1610 LHLLQGSMVQAK---ADLQKALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQI 1686
Cdd:TIGR04523 112 IKNDKEQKNKLEvelNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDK 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1687 VLRQMSKHKTELKNILDMLQLEN---NELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLER 1763
Cdd:TIGR04523 192 IKNKLLKLELLLSNLKKKIQKNKsleSQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSE 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1764 NKREIERMTAESRALQSCVECLSKEKEDL-QEKCDIWEKKLaqtKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLN 1842
Cdd:TIGR04523 272 KQKELEQNNKKIKELEKQLNQLKSEISDLnNQKEQDWNKEL---KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLK 348
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1843 RDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQD---HLNLAKQDLLHTTKHQDVLLSEqtrLQKDISEWANRFEDCQ 1919
Cdd:TIGR04523 349 KELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQeikNLESQINDLESKIQNQEKLNQQ---KDEQIKKLQQEKELLE 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1920 KEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLE---KELTDQKSKLDQVLSKV 1996
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEqkqKELKSKEKELKKLNEEK 505
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1997 LAAEERVRILQEEErwgESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADsmradfsllrnqflterkkaekqvasl 2076
Cdd:TIGR04523 506 KELEEKVKDLTKKI---SSLKEKIEKLESEKKEKESKISDLEDELNKDDFELK--------------------------- 555
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2077 KEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQM----ANQKDLERRQME 2152
Cdd:TIGR04523 556 KENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELekakKENEKLSSIIKN 635
|
650 660 670
....*....|....*....|....*....|
gi 1622871293 2153 ISDAMRTLKSEVKdEIRTSLKNLNQFLPEL 2182
Cdd:TIGR04523 636 IKSKKNKLKQEVK-QIKETIKEIRNKWPEI 664
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
441-820 |
4.79e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 58.77 E-value: 4.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEavqlkkiseagkdllykqlsgrlqlvnklRQEALDLELQME 520
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEALEAELDALQE-----------------------------RREALQRLAEYS 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 521 KQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMkaqkrgkEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLT 600
Cdd:COG4913 658 WDEIDVASAEREIAELEAELERLDASSDDLAAL-------EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELD 730
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 601 EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNEcRKLQDEKETLLQRLtevEQERDQLEivamdaenmrkelAEL 680
Cdd:COG4913 731 ELQDRLEAAEDLARLELRALLEERFAAALGDAVERELR-ENLEERIDALRARL---NRAEEELE-------------RAM 793
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 681 ESALQEQHEVNASLQQTQGDLSAYEAELEarlNLRDTEASQLKEELEK-VTRLTQLEQSALQAELEKERQALKN------ 753
Cdd:COG4913 794 RAFNREWPAETADLDADLESLPEYLALLD---RLEEDGLPEYEERFKElLNENSIEFVADLLSKLRRAIREIKEridpln 870
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622871293 754 -ALGKAQFSEEkeqenselhaklKHLQ-DDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAA-----RVDELRRKL 820
Cdd:COG4913 871 dSLKRIPFGPG------------RYLRlEARPRPDPEVREFRQELRAVTSGASLFDEELSearfaALKRLIERL 932
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
270-1093 |
1.06e-07 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 57.67 E-value: 1.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQ 349
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQEL 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 350 YELEQElafyKIDAKFEPLNYYPSEYAEIDKAPDEspyigKSRYKRNMFATESYIIDNAQAIQIKKMEPDEQLRNDHVNL 429
Cdd:pfam02463 246 LRDEQE----EIESSKQEIEKEEEKLAQVLKENKE-----EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKL 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 430 RGHAPLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEE-AVQLKKISEAGKDLLYKQLSGRLQLVNKL 508
Cdd:pfam02463 317 KESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEkLEQLEEELLAKKKLESERLSSAAKLKEEE 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 509 RQEA--------------------LDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKEQQLDIMN 568
Cdd:pfam02463 397 LELKseeekeaqlllelarqledlLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKE 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 569 KQYKQLESRLDEILSRIAKETEEIKDLE-QQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKE 647
Cdd:pfam02463 477 TQLVKLQEQLELLLSRQKLEERSQKESKaRSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSAT 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 648 TLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELE 727
Cdd:pfam02463 557 ADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTK 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 728 KVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPE 807
Cdd:pfam02463 637 LKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLK 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 808 EVAARVDELRRKLKLGAGEMNIHSPSDVLGKSLADLQKQFSEILAHSQWERNEAQVRERKLQEEMALQQEKLATGQEEFR 887
Cdd:pfam02463 717 LEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKL 796
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 888 QACERALEARINFDKRQ--HEARIQQLENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKS 965
Cdd:pfam02463 797 KAQEEELRALEEELKEEaeLLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKE 876
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 966 QEQFFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIEL 1045
Cdd:pfam02463 877 EELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADEKEKEENNKE 956
|
810 820 830 840
....*....|....*....|....*....|....*....|....*...
gi 1622871293 1046 LQNLLRQKEEQFRLEMEKTGVGTGSNSQVLEIEKLKETMERQRIEIAR 1093
Cdd:pfam02463 957 EEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDELEKERLEEEK 1004
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
435-732 |
1.17e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEavQLKKISEAGKDLLYKQLSGRLQLVNKlrqeald 514
Cdd:TIGR02169 728 LEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE--DLHKLEEALNDLEARLSHSRIPEIQA------- 798
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 515 lelQMEKQKQEIAEKQKEIKDLQiaiDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKD 594
Cdd:TIGR02169 799 ---ELSKLEEEVSRIEARLREIE---QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEE 872
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 595 LEQQLT--EGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVA---MD 669
Cdd:TIGR02169 873 LEAALRdlESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPeeeLS 952
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622871293 670 AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRL 732
Cdd:TIGR02169 953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
631-1058 |
1.30e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 57.08 E-value: 1.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 631 QATQAQNECRKLQDEKETLLQRLTEVEQERDQLEivamDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEA 710
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELR----EELEKLEKLLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 711 RLNLRDTEASQLKEELEKVTRLTQLEQSALQAELEKERQALKNAlgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLK 790
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL-------EELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 791 DFQNHLnhvvdglvRPEEVAARVDELRRKLKLGAG----EMNIHSPSDVLGKSLADLQKQFSEILAHSQWERNEAQVRER 866
Cdd:COG4717 231 QLENEL--------EAAALEERLKEARLLLLIAAAllalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGK 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 867 KLQEEMALQQEKLATGQEEFRQACERALEARIN----FDKRQHEARIQQLENEIHYLQENLK---SMEEIQGLTDLQLQE 939
Cdd:COG4717 303 EAEELQALPALEELEEEELEELLAALGLPPDLSpeelLELLDRIEELQELLREAEELEEELQleeLEQEIAALLAEAGVE 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 940 ADEEKERILAQLREL-EKKKKLEDAKSQ-EQFFGLDKELKKLKKAVATSDKLATAELTIA--KDQLKSLHGTVMKINQER 1015
Cdd:COG4717 383 DEEELRAALEQAEEYqELKEELEELEEQlEELLGELEELLEALDEEELEEELEELEEELEelEEELEELREELAELEAEL 462
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 1016 ---------AEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFR 1058
Cdd:COG4717 463 eqleedgelAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
631-1060 |
1.42e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 56.70 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 631 QATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESA---LQEQHEVNASLQQTQGDLSAYEAE 707
Cdd:COG4717 75 ELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlplYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 708 LEARLNLRDTEASQLKEELEKVTRLTQLEQSALQAELEKERQALKNAlgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQ 787
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEEL-------EELQQRLAELEEELEEAQEELEELEE 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 788 QLKDFQNHLnhvvdglvRPEEVAARVDELRRKLKLGAG----EMNIHSPSDVLGKSLADLQKQFSEILAHSQWERNEAQV 863
Cdd:COG4717 228 ELEQLENEL--------EAAALEERLKEARLLLLIAAAllalLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKAS 299
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 864 RERKLQEEMALQQEKLATGQEEFRQACERALEARIN----FDKRQHEARIQQLENEIHYLQENLK---SMEEIQGLTDLQ 936
Cdd:COG4717 300 LGKEAEELQALPALEELEEEELEELLAALGLPPDLSpeelLELLDRIEELQELLREAEELEEELQleeLEQEIAALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 937 LQEADEEKERILAQLREL-EKKKKLEDAKSQ-EQFFGLDKELKKLKKAVATSDKLATAELTIA--KDQLKSLHGTVMKIN 1012
Cdd:COG4717 380 GVEDEEELRAALEQAEEYqELKEELEELEEQlEELLGELEELLEALDEEELEEELEELEEELEelEEELEELREELAELE 459
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1622871293 1013 Q-----ERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFRLE 1060
Cdd:COG4717 460 AeleqlEEDGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
427-818 |
1.83e-07 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 56.89 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 427 VNLRGHAPLDRQLEDKEKKISAAQTRLSELHDEIEKA-------EQQILRATEEFKQLEEAV-QLKKISEAGKDL--LYK 496
Cdd:PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELneaesdlEQDYQAASDHLNLVQTALrQQEKIERYQADLeeLEE 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 497 QLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLES 576
Cdd:PRK04863 363 RLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED 442
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 577 RLDEILSRIAKETEEIKDLEQQLTEGQiaanealkkdlegvisglqeylgTIKGQATQAQNECRKLQDE--KETLLQRLT 654
Cdd:PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQ-----------------------AAHSQFEQAYQLVRKIAGEvsRSEAWDVAR 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 655 EVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSA---YEAELEARLNLRDTEASQLKEELEKVtR 731
Cdd:PRK04863 500 ELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKnldDEDELEQLQEELEARLESLSESVSEA-R 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 732 LTQLEQSALQAELEKERQALknalgkaqfsEEKEQENSELHAKLKHLQD---DNNLLKQQLKDF-QNHLNHVVDGLVRPE 807
Cdd:PRK04863 579 ERRMALRQQLEQLQARIQRL----------AARAPAWLAAQDALARLREqsgEEFEDSQDVTEYmQQLLERERELTVERD 648
|
410
....*....|.
gi 1622871293 808 EVAARVDELRR 818
Cdd:PRK04863 649 ELAARKQALDE 659
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
435-609 |
1.99e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.61 E-value: 1.99e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAV--QLKKISEAGKDLLY----------KQLSGRL 502
Cdd:COG3883 42 LQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELgeRARALYRSGGSVSYldvllgsesfSDFLDRL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 503 QLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKdpkhshMKAQKRGKEQQLDIMNKQYKQLESRLDEIL 582
Cdd:COG3883 122 SALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAE------LEAAKAELEAQQAEQEALLAQLSAEEAAAE 195
|
170 180
....*....|....*....|....*..
gi 1622871293 583 SRIAKETEEIKDLEQQLTEGQIAANEA 609
Cdd:COG3883 196 AQLAELEAELAAAEAAAAAAAAAAAAA 222
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1536-2204 |
2.14e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.52 E-value: 2.14e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1536 LSKKKEKLTEELQKLQKDVEMAERSEDHHLQVL----KESETLLQAKRAELEKLKSQVTSQQQEMAvLDRQLGYKKEELH 1611
Cdd:TIGR00618 192 LHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLekelKHLREALQQTQQSHAYLTQKREAQEEQLK-KQQLLKQLRARIE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1612 LLQgSMVQAKADLQKALrlgetEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQM 1691
Cdd:TIGR00618 271 ELR-AQEAVLEETQERI-----NRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQR 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1692 SKHKT-------------ELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQK 1758
Cdd:TIGR00618 345 RLLQTlhsqeihirdaheVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQG 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1759 QLLERNKREI---ERMTAESRALQSCVECLSKEKEDLQE---KCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVR 1832
Cdd:TIGR00618 425 QLAHAKKQQElqqRYAELCAAAITCTAQCEKLEKIHLQEsaqSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPC 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1833 KLQQELDQLNRdKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQdhlnlakQDLLHTTKHQDVLLSEQTRLQKDISEWA 1912
Cdd:TIGR00618 505 PLCGSCIHPNP-ARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVY-------HQLTSERKQRASLKEQMQEIQQSFSILT 576
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1913 NRFEDCQKEEETKQQQLQVLQSEIEENklklvqqemifqrlQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQV 1992
Cdd:TIGR00618 577 QCDNRSKEDIPNLQNITVRLQDLTEKL--------------SEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELA 642
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1993 LSKVLAAEERVRILQEEERwgESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQfLTERKKAEKQ 2072
Cdd:TIGR00618 643 LKLTALHALQLTLTQERVR--EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLREL-ETHIEEYDRE 719
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2073 VASLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKdleRRQME 2152
Cdd:TIGR00618 720 FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN---RLREE 796
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 2153 ISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLK 2204
Cdd:TIGR00618 797 DTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEIT 848
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
516-761 |
2.31e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.61 E-value: 2.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 516 ELQMEKQKQEIAEKQKEIKDLQIAIDSLDskdpkhshmkaqkrgkeQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDL 595
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQ-----------------AELEELNEEYNELQAELEALQAEIDKLQAEIAEA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 596 EQQLTEGQIAANEALK------------------KDLEGVISGLQeYLGTIkgqATQAQNECRKLQDEKETLLQRLTEVE 657
Cdd:COG3883 78 EAEIEERREELGERARalyrsggsvsyldvllgsESFSDFLDRLS-ALSKI---ADADADLLEELKADKAELEAKKAELE 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 658 QERDQLEIVAMDAENMRKELaelESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQLEQ 737
Cdd:COG3883 154 AKLAELEALKAELEAAKAEL---EAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
250 260
....*....|....*....|....
gi 1622871293 738 SALQAELEKERQALKNALGKAQFS 761
Cdd:COG3883 231 AAAAAAAAAAAAAASAAGAGAAGA 254
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
561-769 |
2.32e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.18 E-value: 2.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 561 EQQLDIMNKQYKQLESRLDEILSR--IAKETEEIKDLEQQLTE--GQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 636
Cdd:COG3206 181 EEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSEleSQLAEARAELAEAEARLAALRAQLGSGPDALPELL 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 637 NecrklQDEKETLLQRLTEVEQERDQLEIVAMDA----ENMRKELAELESAL-QEQHEVNASLQQTQGDLSAYEAELEAR 711
Cdd:COG3206 261 Q-----SPVIQQLRAQLAELEAELAELSARYTPNhpdvIALRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQ 335
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622871293 712 LNlrdteasQLKEELEKVTRLtQLEQSALQAELEKERQALKNALGKAQFSEEKEQENS 769
Cdd:COG3206 336 LA-------QLEARLAELPEL-EAELRRLEREVEVARELYESLLQRLEEARLAEALTV 385
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
148-205 |
2.42e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 49.45 E-value: 2.42e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 148 KLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEIEHI-PVWLGKkLKSLRVLNLKGNKI 205
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLsPGAFSG-LPSLRYLDLSGNRL 61
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1847-2069 |
2.66e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1847 SLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQ 1926
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1927 ----QQLQVLQSEIEENKLKL----------VQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQv 1992
Cdd:COG4942 104 eelaELLRALYRLGRQPPLALllspedfldaVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAE- 182
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622871293 1993 lskvlaaeervrilQEEERwgESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKA 2069
Cdd:COG4942 183 --------------LEEER--AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
420-817 |
3.69e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 3.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 420 EQLRNDHVNLRGHAPLDR-QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVqlkkiseagkdllyKQL 498
Cdd:PRK02224 289 EELEEERDDLLAEAGLDDaDAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDA--------------DDL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 499 SGRLQlvnKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLdskdpkhshmKAQKRGKEQQLDIMNKQYKQLESRL 578
Cdd:PRK02224 355 EERAE---ELREEAAELESELEEAREAVEDRREEIEELEEEIEEL----------RERFGDAPVDLGNAEDFLEELREER 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 579 DEILSRIAKETEEIKDLEQQLTEG------------------------------QIAANEALKKDLEGVISGLQEYLGTI 628
Cdd:PRK02224 422 DELREREAELEATLRTARERVEEAealleagkcpecgqpvegsphvetieedreRVEELEAELEDLEEEVEEVEERLERA 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 629 KgQATQAQNECRKLQDEKETLLQRLTE----VEQERDQleivamdAENMRKELAELESALQEQHEVNASLQQTQGDLSAY 704
Cdd:PRK02224 502 E-DLVEAEDRIERLEERREDLEELIAErretIEEKRER-------AEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 705 EAELEARLnlrdteaSQLKEELEKVTRLTQL--EQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDN 782
Cdd:PRK02224 574 VAELNSKL-------AELKERIESLERIRTLlaAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEA 646
|
410 420 430
....*....|....*....|....*....|....*..
gi 1622871293 783 NL--LKQQLKDFQNHLNHVVDGLvrpEEVAARVDELR 817
Cdd:PRK02224 647 RIeeAREDKERAEEYLEQVEEKL---DELREERDDLQ 680
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
523-1122 |
3.73e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.82 E-value: 3.73e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 523 KQEIAEKqkEIKDLQIAIDSLDSK----DPKHSHMKAQKRGKEQQLDimnkqykqlesRLDEILSRIAKETEEIKDLEQQ 598
Cdd:PRK02224 193 KAQIEEK--EEKDLHERLNGLESElaelDEEIERYEEQREQARETRD-----------EADEVLEEHEERREELETLEAE 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 599 LTEGQ--IAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLeivamdaenmRKE 676
Cdd:PRK02224 260 IEDLRetIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEEL----------RDR 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 677 LAELESALQEQHEVNASLQQTQGDLSAYEAELEarlnlrdTEASQLKEELEKvTRLTQLEQSALQAELEKERQALKNALG 756
Cdd:PRK02224 330 LEECRVAAQAHNEEAESLREDADDLEERAEELR-------EEAAELESELEE-AREAVEDRREEIEELEEEIEELRERFG 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 757 KAQFSEEKEQENSELhaklkhLQDDNNLLKQQLKDFQNHLnhvvdglvrpEEVAARVDELRRKLKLGagemniHSPSdvL 836
Cdd:PRK02224 402 DAPVDLGNAEDFLEE------LREERDELREREAELEATL----------RTARERVEEAEALLEAG------KCPE--C 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 837 GKSLADlqkqfSEILAHSqwerneAQVRERKlqEEMALQQEKLATGQEEFRQACERALEARinfdkrQHEARIQQLENEI 916
Cdd:PRK02224 458 GQPVEG-----SPHVETI------EEDRERV--EELEAELEDLEEEVEEVEERLERAEDLV------EAEDRIERLEERR 518
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 917 HYLQENLKSMEEIQGLTDLQLQEADEEKE---------RILAQLRELEKKKKLEDAKSQEQFFGLDKELKKLKKAVATSD 987
Cdd:PRK02224 519 EDLEELIAERRETIEEKRERAEELRERAAeleaeaeekREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLL 598
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 988 klatAELTIAKDQLKSLhgtvmkinQERAEELQEAERFSRKAAQAARDLTRA------EAEIELLQNLLRQKEEQfrlem 1061
Cdd:PRK02224 599 ----AAIADAEDEIERL--------REKREALAELNDERRERLAEKRERKREleaefdEARIEEAREDKERAEEY----- 661
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 1062 ektgvgtgsnsqvleIEKLKETMERQRIEIARLQNVLdltgtdskGGFENVLEEIAELRRE 1122
Cdd:PRK02224 662 ---------------LEQVEEKLDELREERDDLQAEI--------GAVENELEELEELRER 699
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
539-770 |
4.12e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 54.84 E-value: 4.12e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 539 AIDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLTEGQiAANEALKKDLEGVI 618
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE-AEIEERREELGERA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 619 SGLQEYLGTIK--GQATQAQNecrkLQD--EKETLLQRLTevEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASL 694
Cdd:COG3883 93 RALYRSGGSVSylDVLLGSES----FSDflDRLSALSKIA--DADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 695 QQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSE 770
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 242
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
126-181 |
4.94e-07 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 48.67 E-value: 4.94e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 126 KLEVLNLSYNLIGKIEK--LDKLLKLRELNLSYNKISKIEG--IENMCNLQKLNLAGNEI 181
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDgaFKGLSNLKVLDLSNNLLTTLSPgaFSGLPSLRYLDLSGNRL 61
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1342-1975 |
5.19e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 55.51 E-value: 5.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1342 ERWMRASKRQSEKEMEELhhniddLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTELEI--EKSLKHHEDIVD 1419
Cdd:pfam15921 244 EDQLEALKSESQNKIELL------LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIiqEQARNQNSMYMR 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1420 EIECIEKTLLKRRSELREADRLLAEAESELsctKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELR 1499
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMYEDKIEEL---EKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELS 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1500 LLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKlQKDVEMAErsedhhlqvlkesetlLQAKR 1579
Cdd:pfam15921 395 LEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQG-QMERQMAA----------------IQGKN 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1580 AELEKLKS---QVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKALRLGETEVAEKCNHIKEVKSLLEELSFQK 1656
Cdd:pfam15921 458 ESLEKVSSltaQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLK 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1657 GE------LNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKH-KTELKNILDMLQLENN------ELQGLKLQHDQKV 1723
Cdd:pfam15921 538 NEgdhlrnVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHgRTAGAMQVEKAQLEKEindrrlELQEFKILKDKKD 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1724 SELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLskeKEDLQEKCDIWEKKL 1803
Cdd:pfam15921 618 AKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVL---KRNFRNKSEEMETTT 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1804 AQTKRVLAAAeenskmeQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLA 1883
Cdd:pfam15921 695 NKLKMQLKSA-------QSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFL 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1884 KQDLLHTTKHQDVLLSEQTRLqkdisewANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRlqKERESEESK 1963
Cdd:pfam15921 768 KEEKNKLSQELSTVATEKNKM-------AGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQR--QEQESVRLK 838
|
650
....*....|..
gi 1622871293 1964 LETSkVTLKEQQ 1975
Cdd:pfam15921 839 LQHT-LDVKELQ 849
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1757-1999 |
5.69e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 5.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1757 QKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQ 1836
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1837 ELDQLnRDKLSlhNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQdllhttkhqdvLLSEQTRLQKDISEWANRFE 1916
Cdd:COG4942 98 ELEAQ-KEELA--ELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKY-----------LAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1917 DCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKV 1996
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
...
gi 1622871293 1997 LAA 1999
Cdd:COG4942 244 PAA 246
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1336-1996 |
5.89e-07 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 55.23 E-value: 5.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1336 KSKQQEERWMRasKRQSEKEMEELHHNIDDLLQE---KKSLECEVEELHRTVQKRQQQkdfidgnVESLMTELEIEKSLK 1412
Cdd:pfam12128 218 LNRQQVEHWIR--DIQAIAGIMKIRPEFTKLQQEfntLESAELRLSHLHFGYKSDETL-------IASRQEERQETSAEL 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1413 HHEDIVDEIECIEKTLlKRRSELREADRLLAEAESELSCTKEKT----KNAVEKFTDAKRSLLQTESDAEELERR--AQE 1486
Cdd:pfam12128 289 NQLLRTLDDQWKEKRD-ELNGELSAADAAVAKDRSELEALEDQHgaflDADIETAAADQEQLPSWQSELENLEERlkALT 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1487 TAINLVKAHQELRLLQAD---AKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSkkkeklteelQKLQKDVEMAERSedh 1563
Cdd:pfam12128 368 GKHQDVTAKYNRRRSKIKeqnNRDIAGIKDKLAKIREARDRQLAVAEDDLQALE----------SELREQLEAGKLE--- 434
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1564 hlqvLKESETLLQAKRAELEKLKSQVTSQQQEMAvldrQLGYKKEELHLLQGSMVQAKA---DLQKALRLGETEVAEKCN 1640
Cdd:pfam12128 435 ----FNEEEYRLKSRLGELKLRLNQATATPELLL----QLENFDERIERAREEQEAANAeveRLQSELRQARKRRDQASE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1641 HIKEVKSLLEELSFQKGELNVQISERK-TQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQL-ENNELQGLKLQ 1718
Cdd:pfam12128 507 ALRQASRRLEERQSALDELELQLFPQAgTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVgGELNLYGVKLD 586
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1719 HDQ-KVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEwqKQLLERNKREIERMTAESRALQScvecLSKEKEDLQEKCD 1797
Cdd:pfam12128 587 LKRiDVPEWAASEEELRERLDKAEEALQSAREKQAAAE--EQLVQANGELEKASREETFARTA----LKNARLDLRRLFD 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1798 IWEKKLAQTKRVLAAAEENSKMEQSNLEK-LELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQ-EKQEAVNSLQEELAN 1875
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAqLKQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEgALDAQLALLKAAIAA 740
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1876 VQD----HLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEE-----------ETKQQQLQVLQSEIEENK 1940
Cdd:pfam12128 741 RRSgakaELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRqevlryfdwyqETWLQRRPRLATQLSNIE 820
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 1941 LKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTdqksKLDQVLSKV 1996
Cdd:pfam12128 821 RAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLR----GLRCEMSKL 872
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
440-742 |
6.70e-07 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.96 E-value: 6.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 440 EDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLkkiseagkdllykqLSGRLQLVNKL-------RQEA 512
Cdd:COG3096 832 PDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQL--------------LNKLLPQANLLadetladRLEE 897
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 513 LDLEL-QMEKQKQEIAEKQKEIKDLQIAIDSLDSkDPkhshmkaqkrgkeQQLDIMNKQYKQLESRLDEILSRIAKETEE 591
Cdd:COG3096 898 LREELdAAQEAQAFIQQHGKALAQLEPLVAVLQS-DP-------------EQFEQLQADYLQAKEQQRRLKQQIFALSEV 963
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 592 IK--------DLEQQLTEGQiAANEALKKDLEGV---ISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQER 660
Cdd:COG3096 964 VQrrphfsyeDAVGLLGENS-DLNEKLRARLEQAeeaRREAREQLRQAQAQYSQYNQVLASLKSSRDAKQQTLQELEQEL 1042
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 661 DQLEIVAmDAEnmrkelAElESALQEQHEVNASLQQTQGDLSayeaELEARLNLRDTEASQLKEELEKVTR-LTQLEQSA 739
Cdd:COG3096 1043 EELGVQA-DAE------AE-ERARIRRDELHEELSQNRSRRS----QLEKQLTRCEAEMDSLQKRLRKAERdYKQEREQV 1110
|
...
gi 1622871293 740 LQA 742
Cdd:COG3096 1111 VQA 1113
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
423-1122 |
8.47e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 8.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 423 RNDHVN-LRGHAPLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQ----LKKISEAGK-DLLYK 496
Cdd:PTZ00121 1062 AKAHVGqDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKkaedARKAEEARKaEDARK 1141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 497 QLSGRLQLVNKLRQEALDLElqmEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHmKAQKRGKEQQLDIMNKQYKQLES 576
Cdd:PTZ00121 1142 AEEARKAEDAKRVEIARKAE---DARKAEEARKAEDAKKAEAARKAEEVRKAEELR-KAEDARKAEAARKAEEERKAEEA 1217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 577 RLDEILSRI--AKETEEI-KDLEQQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRL 653
Cdd:PTZ00121 1218 RKAEDAKKAeaVKKAEEAkKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKK 1297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 654 TEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARlnlrdTEASQLKEELEKVTRLT 733
Cdd:PTZ00121 1298 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA-----ADEAEAAEEKAEAAEKK 1372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 734 QLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQnhlnhvVDGLVRPEEVAARV 813
Cdd:PTZ00121 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK------ADEAKKKAEEAKKA 1446
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 814 DELRRKLKLGAGEMNIHSPSDVLGKslADLQKQFSEILAHSQWERNEAQVRERKLQEEMALQQEKlaTGQEEFRQACE-- 891
Cdd:PTZ00121 1447 DEAKKKAEEAKKAEEAKKKAEEAKK--ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK--KKADEAKKAEEak 1522
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 892 RALEARINFDKRQHEARIQQLENEihyLQENLKSMEEIQGLTDL-QLQEADEEKERILAQLRELEKKKKLEDAKSQEQFF 970
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKK---KADELKKAEELKKAEEKkKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 971 GLDKELKKLKKAVATSDklataELTIAKDQLK---SLHGTVMKINQERAEELQEAERFSRKAAQA---ARDLTRAEAEIE 1044
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAE-----EAKIKAEELKkaeEEKKKVEQLKKKEAEEKKKAEELKKAEEENkikAAEEAKKAEEDK 1674
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622871293 1045 LLQNLLRQKEEQFRLEMEKTGVGTGSNSQVLEIEKLKETMERQRIEIARLQNVLDLTGTDSKGGFENVLEEIAELRRE 1122
Cdd:PTZ00121 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKD 1752
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1335-2187 |
8.76e-07 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 54.41 E-value: 8.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1335 LKSKQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLE----------CEVEELHRTVQKRQQqkdfidgnveslmte 1404
Cdd:pfam01576 7 MQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQeqlqaetelcAEAEEMRARLAARKQ--------------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1405 lEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKnaVEKFTdakrsllqTESDAEELERRA 1484
Cdd:pfam01576 72 -ELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQ--LEKVT--------TEAKIKKLEEDI 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1485 QETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAED---SDFQCLSKKKEKLTEELQKLQKDVEmaerse 1561
Cdd:pfam01576 141 LLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKSLSKLKNKHEamiSDLEERLKKEEKGRQELEKAKRKLE------ 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1562 dhhlqvlkesetllqakrAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQ---AKADLQKALRLGETEVAEK 1638
Cdd:pfam01576 215 ------------------GESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEetaQKNNALKKIRELEAQISEL 276
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1639 CNHIKEVKSLLEELSFQKGELNVQISERKTQLtlikqEIEKEEENLQIVLRqmSKHKTELKNILDMLQLENN----ELQG 1714
Cdd:pfam01576 277 QEDLESERAARNKAEKQRRDLGEELEALKTEL-----EDTLDTTAAQQELR--SKREQEVTELKKALEEETRsheaQLQE 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1715 LKLQHDQKVSELEKtqvavleeklelenLQQIAQQQKGEIEWQKQLLERNKREierMTAESRALQSCVECLSKEKEDLQE 1794
Cdd:pfam01576 350 MRQKHTQALEELTE--------------QLEQAKRNKANLEKAKQALESENAE---LQAELRTLQQAKQDSEHKRKKLEG 412
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1795 KCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELA 1874
Cdd:pfam01576 413 QLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLR 492
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1875 NVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQ 1954
Cdd:pfam01576 493 QLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLE 572
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1955 KERESEESKLETSKVTLkEQQHQLEKELTDQKSKLDQVLSKVLA-----AEERVRIlQEEERWGESLEKTLSQTKRELSE 2029
Cdd:pfam01576 573 KTKNRLQQELDDLLVDL-DHQRQLVSNLEKKQKKFDQMLAEEKAisaryAEERDRA-EAEAREKETRALSLARALEEALE 650
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2030 REQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEalkiQRSQLEKNLleQKQENSCMQKEMATIE 2109
Cdd:pfam01576 651 AKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERSKRALEQQVEEMKT----QLEELEDEL--QATEDAKLRLEVNMQA 724
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2110 LVAQ----------DNHERARRLMKELNQMQYEYTELKKQ----MANQKDLErrqMEISDAMRTLKSEVK--DEIRTSLK 2173
Cdd:pfam01576 725 LKAQferdlqardeQGEEKRRQLVKQVRELEAELEDERKQraqaVAAKKKLE---LDLKELEAQIDAANKgrEEAVKQLK 801
|
890
....*....|....
gi 1622871293 2174 NLNQFLPELPADLE 2187
Cdd:pfam01576 802 KLQAQMKDLQRELE 815
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1424-2154 |
9.63e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 54.59 E-value: 9.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1424 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLLQA 1503
Cdd:TIGR00618 188 KKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRA 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1504 DAKDLEQHKIKQEEILKEINkivaaedsdfqcLSKKKEKLTEElqklQKDVEMAERSEDHHLQVLKESETLLQAKRAELE 1583
Cdd:TIGR00618 268 RIEELRAQEAVLEETQERIN------------RARKAAPLAAH----IKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRA 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1584 KLKSQVTSQQQEMAVLDRQLgykKEELHLLQGSMVQAKADLQKALRLGETEVAEKCNHIKEVksLLEELSFQKGELNVQI 1663
Cdd:TIGR00618 332 AHVKQQSSIEEQRRLLQTLH---SQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTT--LTQKLQSLCKELDILQ 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1664 SERKTQLTLIKQEIEKEeenlQIVLRQMSKHKTELKNILDMLQLENNELQGLKlqhdQKVSELEKTQVAVLEEKLELENL 1743
Cdd:TIGR00618 407 REQATIDTRTSAFRDLQ----GQLAHAKKQQELQQRYAELCAAAITCTAQCEK----LEKIHLQESAQSLKEREQQLQTK 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1744 QQIAQQqkgeiewqkqllERNKREIERMTAESRALQSCVECLSkEKEDLQEKCDIWEKKlAQTKRVLAAAEENSKMEQSn 1823
Cdd:TIGR00618 479 EQIHLQ------------ETRKKAVVLARLLELQEEPCPLCGS-CIHPNPARQDIDNPG-PLTRRMQRGEQTYAQLETS- 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1824 leklelnVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTR 1903
Cdd:TIGR00618 544 -------EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHA 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1904 LQKDISEWANRFEDCQkEEETKQQQLQVLQSEIEENKLKLVQQEmIFQRLQKERESEESKLETSKVTLKEQQHQLEkELT 1983
Cdd:TIGR00618 617 LLRKLQPEQDLQDVRL-HLQQCSQELALKLTALHALQLTLTQER-VREHALSIRVLPKELLASRQLALQKMQSEKE-QLT 693
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1984 DQKSKLDQVLSKVLAAEERVrilQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFL 2063
Cdd:TIGR00618 694 YWKEMLAQCQTLLRELETHI---EEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEV 770
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2064 TERKKAEKQVASLKEALKIQRSQLEKNLLEQKQENSCMQKEM--------ATIELVAQDN---HERARRLMKELNQMQYE 2132
Cdd:TIGR00618 771 TAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIpsdedilnLQCETLVQEEeqfLSRLEEKSATLGEITHQ 850
|
730 740
....*....|....*....|..
gi 1622871293 2133 YTELKKQMANQKDLERRQMEIS 2154
Cdd:TIGR00618 851 LLKYEECSKQLAQLTQEQAKII 872
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1930-2156 |
1.15e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1930 QVLQSEIEENKLKLVQQEMifqrlqKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEE 2009
Cdd:COG4942 18 QADAAAEAEAELEQLQQEI------AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2010 ErwgESLEKTLSQTKRELSEREQQLVEKSG----ELLALQKEADSMRADFSLL------RNQFLTERKKAEKQVASLKEA 2079
Cdd:COG4942 92 I---AELRAELEAQKEELAELLRALYRLGRqpplALLLSPEDFLDAVRRLQYLkylapaRREQAEELRADLAELAALRAE 168
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622871293 2080 LKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDA 2156
Cdd:COG4942 169 LEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
1825-2203 |
1.27e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 54.19 E-value: 1.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1825 EKLELNVRKLQQELDQLN-RDKLSLHND-ISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTK---HQDVL-- 1897
Cdd:COG3096 279 ERRELSERALELRRELFGaRRQLAEEQYrLVEMARELEELSARESDLEQDYQAASDHLNLVQTALRQQEKierYQEDLee 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1898 LSEQTRLQKDISEWAN--------RFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERE-SEESKLEtsk 1968
Cdd:COG3096 359 LTERLEEQEEVVEEAAeqlaeaeaRLEAAEEEVDSLKSQLADYQQALDVQQTRAIQYQQAVQALEKARAlCGLPDLT--- 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1969 vtlkeqQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQ----EEERWGESLEKTLSQTKRELS-EREQQLVEKSGELLA 2043
Cdd:COG3096 436 ------PENAEDYLAAFRAKEQQATEEVLELEQKLSVADaarrQFEKAYELVCKIAGEVERSQAwQTARELLRRYRSQQA 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2044 LQKEADSMRADFSLLRnQFLTERKKAEKQVASLKEALKIQRSQLEkNLLEQKQEnscMQKEMATIELVAQDNHERARRLM 2123
Cdd:COG3096 510 LAQRLQQLRAQLAELE-QRLRQQQNAERLLEEFCQRIGQQLDAAE-ELEELLAE---LEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2124 KELNQMQYEYTELKKQ----MANQKDLERRQmEISDAMRTLKSEVKDEIRTSLKNLNqflpELPADLEAILERNENLEGE 2199
Cdd:COG3096 585 QQLEQLRARIKELAARapawLAAQDALERLR-EQSGEALADSQEVTAAMQQLLERER----EATVERDELAARKQALESQ 659
|
....
gi 1622871293 2200 LESL 2203
Cdd:COG3096 660 IERL 663
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1320-1802 |
1.29e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 1.29e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1320 NLENEVSRLEDIMQHLKSKQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKrqqqkdfidgnve 1399
Cdd:PRK03918 225 KLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK------------- 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1400 slmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESElsctKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:PRK03918 292 ----AEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK----EERLEELKKKLKELEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1480 LER-RAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKK------------------ 1540
Cdd:PRK03918 364 YEEaKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKkaieelkkakgkcpvcgr 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1541 -----------EKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKR--AELEKLKSQVTSQQQEMAVLD-RQLGYK 1606
Cdd:PRK03918 444 elteehrkellEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESelIKLKELAEQLKELEEKLKKYNlEELEKK 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1607 KEELHLLQGSMVQAKADLQKalrlgeteVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQI 1686
Cdd:PRK03918 524 AEEYEKLKEKLIKLKGEIKS--------LKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLK 595
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1687 VLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQkgEIEWQKQLLERNKR 1766
Cdd:PRK03918 596 ELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEE--EYEELREEYLELSR 673
|
490 500 510
....*....|....*....|....*....|....*.
gi 1622871293 1767 EIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKK 1802
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKA 709
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1354-1985 |
1.56e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1354 KEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQQKDFIDgnveSLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRS 1433
Cdd:COG4913 235 DDLERAHEALEDAREQIELLE-PIRELAERYAAARERLAELE----YLRAALRLWFAQRRLELLEAELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1434 ELREADRLLAEAESEL-SCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQEtainlvkahqelrlLQADAKDLEQHK 1512
Cdd:COG4913 310 ELERLEARLDALREELdELEAQIRGNGGDRLEQLEREIERLERELEERERRRAR--------------LEALLAALGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1513 IKQEEILKEINKIVAAEdsdfqclskkKEKLTEELQKLQKDVEMAERSedhhLQVLKESETLLQAKRAELEKLKSQVTSQ 1592
Cdd:COG4913 376 PASAEEFAALRAEAAAL----------LEALEEELEALEEALAEAEAA----LRDLRRELRELEAEIASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1593 QQEM-AVLDRQLGYKKEELHLLqGSMVQAKAD-------LQKALR------LgeteVAEKcnHIKEVKSLLEELsfqKGE 1658
Cdd:COG4913 442 LLALrDALAEALGLDEAELPFV-GELIEVRPEeerwrgaIERVLGgfaltlL----VPPE--HYAAALRWVNRL---HLR 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1659 LNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNIL----DMLQLENnelqglklqhdqkVSELEKTQVAVL 1734
Cdd:COG4913 512 GRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELgrrfDYVCVDS-------------PEELRRHPRAIT 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1735 EEKlelenlqQIAQ-QQKGEIEWQKQLLER------NKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTK 1807
Cdd:COG4913 579 RAG-------QVKGnGTRHEKDDRRRIRSRyvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1808 RVLAAAEenskmEQSNLEKLELNVRKLQQELDQLNRDklslHNDISAIQQQLQEKQEAVNSLQEELAnvqdhlnlakqdl 1887
Cdd:COG4913 652 RLAEYSW-----DEIDVASAEREIAELEAELERLDAS----SDDLAALEEQLEELEAELEELEEELD------------- 709
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1888 lhttkhqdvllseqtRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVqQEMIFQRLQKERESEESK-LET 1966
Cdd:COG4913 710 ---------------ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL-EERFAAALGDAVERELREnLEE 773
|
650
....*....|....*....
gi 1622871293 1967 SKVTLKEQQHQLEKELTDQ 1985
Cdd:COG4913 774 RIDALRARLNRAEEELERA 792
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
435-601 |
1.58e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 52.84 E-value: 1.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEavQLKKISEAGKDLLYK------------------ 496
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA--ELEAQKEELAELLRAlyrlgrqpplalllsped 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 497 --QLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSL-DSKDPKHSHMKAQKRGKEQQLDIMNKQYKQ 573
Cdd:COG4942 131 flDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALlAELEEERAALEALKAERQKLLARLEKELAE 210
|
170 180
....*....|....*....|....*...
gi 1622871293 574 LESRLDEILSRIAKETEEIKDLEQQLTE 601
Cdd:COG4942 211 LAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1856-2129 |
1.69e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1856 QQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVL--LSEQTRLQKDISEWanrfedcQKEEETKQQQLQvlq 1933
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALqrLAEYSWDEIDVASA-------EREIAELEAELE--- 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1934 sEIEENKLKLVQQEMIFQRLQKERESEESKLEtskvTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQE---EE 2010
Cdd:COG4913 679 -RLDASSDDLAALEEQLEELEAELEELEEELD----ELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEE 753
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2011 RWGESL-EKTLSQTKRELSEREQQLVEKsgellaLQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIqRSQLEK 2089
Cdd:COG4913 754 RFAAALgDAVERELRENLEERIDALRAR------LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLAL-LDRLEE 826
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1622871293 2090 NLLEQKQE------NSCMQKEMATIELVAQDNHERARRLMKELNQM 2129
Cdd:COG4913 827 DGLPEYEErfkellNENSIEFVADLLSKLRRAIREIKERIDPLNDS 872
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1320-1969 |
1.81e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1320 NLENEVSRLEDIMQhlKSKQQEERwmrasKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDgnvE 1399
Cdd:PRK03918 173 EIKRRIERLEKFIK--RTENIEEL-----IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE---E 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1400 SLMTELEIEKSLKHHEDIVDEIEciektllKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:PRK03918 243 LEKELESLEGSKRKLEEKIRELE-------ERIEELKKEIEELEEKVKEL----KELKEKAEEYIKLSEFYEEYLDELRE 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1480 LERRaqetainLVKAHQELRLLQADAKDLEQHKIKQEEilkeinkivaaedsdfqcLSKKKEKLTEELQKLQKDVEMAER 1559
Cdd:PRK03918 312 IEKR-------LSRLEEEINGIEERIKELEEKEERLEE------------------LKKKLKELEKRLEELEERHELYEE 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1560 sedhhlqvlkesetlLQAKRAELEKLKSQVTsqqqemavldrqlGYKKEELHLLQGSMVQAKADLQKALRLGETEVAEKC 1639
Cdd:PRK03918 367 ---------------AKAKKEELERLKKRLT-------------GLTPEKLEKELEELEKAKEEIEEEISKITARIGELK 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1640 NHIKEVKSLLEELSFQKGELNVQISErktqltlikqEIEKEEENLqivlrqMSKHKTELKNILDMLQLENNELQGLKlqh 1719
Cdd:PRK03918 419 KEIKELKKAIEELKKAKGKCPVCGRE----------LTEEHRKEL------LEEYTAELKRIEKELKEIEEKERKLR--- 479
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1720 dQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEkcdiW 1799
Cdd:PRK03918 480 -KELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE----L 554
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKL----ELNVRKLQQELDQLNRDKLSLHNdisaIQQQLQEKQEAVNSLQEELAN 1875
Cdd:PRK03918 555 KKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPFYNEYLELKD----AEKELEREEKELKKLEEELDK 630
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1876 VQDHLNLAKQDLlhttkhqDVLLSEQTRLQKDISEwaNRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQK 1955
Cdd:PRK03918 631 AFEELAETEKRL-------EELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE 701
|
650
....*....|....
gi 1622871293 1956 ERESEESKLETSKV 1969
Cdd:PRK03918 702 ELEEREKAKKELEK 715
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1757-2175 |
1.90e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.38 E-value: 1.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1757 QKQLLERNKREIErmTAESRALQSCVEclskEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKL-ELNVRKLQ 1835
Cdd:PRK11281 42 QAQLDALNKQKLL--EAEDKLVQQDLE----QTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALkDDNDEETR 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1836 QELDQLNRDKLSlhNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAkqdllhttkhQDVLLSEQTRLQKdISEWANRF 1915
Cdd:PRK11281 116 ETLSTLSLRQLE--SRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERA----------QAALYANSQRLQQ-IRNLLKGG 182
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1916 EDCQKEEETKQQQLqvLQSEieenkLKLVQQEMIFQRLQKERESEESKLETSKVTLK-EQQHQLEKELTDqkskLDQVLS 1994
Cdd:PRK11281 183 KVGGKALRPSQRVL--LQAE-----QALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLtARIQRLEHQLQL----LQEAIN 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1995 -KVLA-AEERVRILQEEERWGE----SLEKTLSQTKRELSEReqqLVEKSGELLALQKEADSMRadfSLLRNQFLTERKk 2068
Cdd:PRK11281 252 sKRLTlSEKTVQEAQSQDEAARiqanPLVAQELEINLQLSQR---LLKATEKLNTLTQQNLRVK---NWLDRLTQSERN- 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2069 AEKQVASLKEALKIQRS-QLEKNLLEQKQENSCMQKEMATIELvaqdnherarrlmkelnqMQYEYTELKKQMANQKDLe 2147
Cdd:PRK11281 325 IKEQISVLKGSLLLSRIlYQQQQALPSADLIEGLADRIADLRL------------------EQFEINQQRDALFQPDAY- 385
|
410 420
....*....|....*....|....*...
gi 1622871293 2148 rrqmeISDAMRTLKSEVKDEIRTSLKNL 2175
Cdd:PRK11281 386 -----IDKLEAGHKSEVTDEVRDALLQL 408
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
288-1005 |
2.14e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 53.30 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 288 ELKSKQTRFLEEIKNQDKLNKSLKEE-AMLQKQ---SCEELKSDLNTKNELLKQKTIELTRAcqkqyeLEQELAFYKIDA 363
Cdd:pfam12128 266 GYKSDETLIASRQEERQETSAELNQLlRTLDDQwkeKRDELNGELSAADAAVAKDRSELEAL------EDQHGAFLDADI 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 364 kfeplnyyPSEYAEIDKAPDESPYIgkSRYKRNMFATESYIIDNAQAIQIKKMEPDEQLRNDHVNLrgHAPLDRQLEDKE 443
Cdd:pfam12128 340 --------ETAAADQEQLPSWQSEL--ENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGI--KDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 444 KKISAAQTRLSELHDEI-EKAEQQILRATEEFKQLEEAvqlkkISEAGKDLLYKQLSGRLqlvnKLRQEALDLELQMEKQ 522
Cdd:pfam12128 408 RQLAVAEDDLQALESELrEQLEAGKLEFNEEEYRLKSR-----LGELKLRLNQATATPEL----LLQLENFDERIERARE 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 523 KQEIAEKQKEikDLQIAIDSLDSKDPKHShmkaqkrgkeQQLDIMNKQYKQLESRLDEilsriaketeeikdLEQQLTEG 602
Cdd:pfam12128 479 EQEAANAEVE--RLQSELRQARKRRDQAS----------EALRQASRRLEERQSALDE--------------LELQLFPQ 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 603 QIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDaENMRKELAELES 682
Cdd:pfam12128 533 AGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASE-EELRERLDKAEE 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 683 ALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQLEQSALQAELEKERQALKNALgkAQFSE 762
Cdd:pfam12128 612 ALQSAREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERL--NSLEA 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 763 EKEQENSELHAKLKHLQDD---NNLLKQQ-LKDFQNHLNHVVDGLVrpEEVAARVDELRRKLKLGAGEMNIHSPS-DVLG 837
Cdd:pfam12128 690 QLKQLDKKHQAWLEEQKEQkreARTEKQAyWQVVEGALDAQLALLK--AAIAARRSGAKAELKALETWYKRDLASlGVDP 767
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 838 KSLADLQKQFSEILAH-SQWERNEAQVRE--RKLQEEMALQQEKLATGQEEFRQACER------ALEARINFDKRQHEAR 908
Cdd:pfam12128 768 DVIAKLKREIRTLERKiERIAVRRQEVLRyfDWYQETWLQRRPRLATQLSNIERAISElqqqlaRLIADTKLRRAKLEME 847
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 909 IQQLENEIHYLQENLKSME-EIQGLTDLQL----QEADEEKERILAQLRELEKKKK--LEDAKSQEQFFGLDKELKKLKK 981
Cdd:pfam12128 848 RKASEKQQVRLSENLRGLRcEMSKLATLKEdansEQAQGSIGERLAQLEDLKLKRDylSESVKKYVEHFKNVIADHSGSG 927
|
730 740
....*....|....*....|....
gi 1622871293 982 AVATSDKLATAELTIAKDQLKSLH 1005
Cdd:pfam12128 928 LAETWESLREEDHYQNDKGIRLLD 951
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
435-702 |
2.26e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.10 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAA----QTRLSELHDEIEKAEQQIlratEEFKQLEEAVQLkkisEAGKDLLYKQLSGrlqlvnkLRQ 510
Cdd:COG3206 162 LEQNLELRREEARKAleflEEQLPELRKELEEAEAAL----EEFRQKNGLVDL----SEEAKLLLQQLSE-------LES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 511 EALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLdSKDPkhshmkaqkrgkeqQLDIMNKQYKQLESRLDEILSRIAKETE 590
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPEL-LQSP--------------VIQQLRAQLAELEAELAELSARYTPNHP 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 591 EIKDLEQQLtegqiaanEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDA 670
Cdd:COG3206 292 DVIALRAQI--------AALRAQLQ---QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREV 360
|
250 260 270
....*....|....*....|....*....|..
gi 1622871293 671 ENMRKELAELesaLQEQHEVNASLQQTQGDLS 702
Cdd:COG3206 361 EVARELYESL---LQRLEEARLAEALTVGNVR 389
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1538-2144 |
2.34e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.14 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1538 KKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVtsqqQEMAVLDRQLGYKKEELHLLQGSM 1617
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1618 VQAKAdlqkalRLGETEvaekcNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIekeeeNLQIVLRQMSKHKTE 1697
Cdd:PRK03918 255 RKLEE------KIRELE-----ERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYE-----EYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1698 LKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMtaesra 1777
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKE------ 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1778 lqscVECLSKEKEDLQEKcdiwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKL--SLHNDISAI 1855
Cdd:PRK03918 393 ----LEELEKAKEEIEEE----ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELleEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1856 QQQLQEKQEAVNSLQEELANVQDHLNLAKQdLLHTTKHQDVLLSEQTRLQK----DISEWANRFEDCQKEEETKQQQLQV 1931
Cdd:PRK03918 465 EKELKEIEEKERKLRKELRELEKVLKKESE-LIKLKELAEQLKELEEKLKKynleELEKKAEEYEKLKEKLIKLKGEIKS 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1932 LQSEIEENKLklvqqemifqrLQKERESEESKLETSKVTLKEQQHQLE-------KELTDQKSKLDQVLSKVLAAEERVR 2004
Cdd:PRK03918 544 LKKELEKLEE-----------LKKKLAELEKKLDELEEELAELLKELEelgfesvEELEERLKELEPFYNEYLELKDAEK 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2005 ILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADsmRADFSLLRNQFLTERKKAEKQVASLKEaLKIQR 2084
Cdd:PRK03918 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYS--EEEYEELREEYLELSRELAGLRAELEE-LEKRR 689
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2085 SQLEKNLLEQKQENSCMQKEMATIELVaqdnhERARRLMKELNQMQYEYTELKKQMANQK 2144
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREKAKKELEKL-----EKALERVEELREKVKKYKALLKERALSK 744
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1747-2205 |
2.40e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.12 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1747 AQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEK 1826
Cdd:PRK02224 232 ARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1827 LELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQK 1906
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1907 DISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKV--------------TLK 1972
Cdd:PRK02224 392 EIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCpecgqpvegsphveTIE 471
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1973 EQQHQLEkELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMR 2052
Cdd:PRK02224 472 EDRERVE-ELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELE 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2053 ADFSLLRNQFLTERKKAEKQVASLKEalkiqrsqLEKNLLEQKQENSCMQKEMATIELVAqDNHERARRLMKELNQMQYE 2132
Cdd:PRK02224 551 AEAEEKREAAAEAEEEAEEAREEVAE--------LNSKLAELKERIESLERIRTLLAAIA-DAEDEIERLREKREALAEL 621
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 2133 YTELKKQMANQKDlERRQMEIS---DAMRTLKSEvKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKE 2205
Cdd:PRK02224 622 NDERRERLAEKRE-RKRELEAEfdeARIEEARED-KERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE 695
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
441-727 |
2.87e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 53.04 E-value: 2.87e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQlkkiseagkdlLYKQLSGRLQL--VNKLRQEALDLELQ 518
Cdd:PRK04863 834 DPEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS-----------ALNRLLPRLNLlaDETLADRVEEIREQ 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 519 M---EKQKQEIAEKQKEIKDLQIAIDSLDSkDPKHShmkAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEikDL 595
Cdd:PRK04863 903 LdeaEEAKRFVQQHGNALAQLEPIVSVLQS-DPEQF---EQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYE--DA 976
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 596 EQQLTEGQiAANEALKKDLEgvisGLQEYLGTIKGQATQAQNECRK-------LQDEKETLLQRLTEVEQERDQLEIVAm 668
Cdd:PRK04863 977 AEMLAKNS-DLNEKLRQRLE----QAEQERTRAREQLRQAQAQLAQynqvlasLKSSYDAKRQMLQELKQELQDLGVPA- 1050
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622871293 669 dAENMRKELA----ELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELE 727
Cdd:PRK04863 1051 -DSGAEERARarrdELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVV 1112
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
471-1058 |
3.09e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 3.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 471 TEEFKQLEEAVQLKKISEAgkdlLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKeikdLQIAIDSLDSKDPKH 550
Cdd:TIGR00618 225 EKELKHLREALQQTQQSHA----YLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEE----TQERINRARKAAPLA 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 551 SHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQEylgtIKG 630
Cdd:TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIRE----ISC 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 631 QATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEA 710
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 711 RLNLRDTEASQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSELHAK-------------LKH 777
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPArqdidnpgpltrrMQR 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 778 LQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDElrRKLKLGAGEMNIHSPSDVLGKSLADLQKQFSEILAHSQWE 857
Cdd:TIGR00618 533 GEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQ--SFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDML 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 858 RNEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARINFDKRQHEARIQQL---ENEIHYLQENLKSMEEIQGLTD 934
Cdd:TIGR00618 611 ACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsirVLPKELLASRQLALQKMQSEKE 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 935 lQLQEADEEKERILAQLRELEKKKKLEDAKSQEQFFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLhgtvMKINQE 1014
Cdd:TIGR00618 691 -QLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKAR----TEAHFN 765
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1622871293 1015 RAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFR 1058
Cdd:TIGR00618 766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG 809
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
270-800 |
3.27e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 52.72 E-value: 3.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 270 EEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNT--KNELLKQKTIELTracq 347
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLleKEKLNIQKNIDKI---- 192
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 348 KQYELEQELAFYKIDAKFEPLNYYPSEYAEIDKapdespyigKSRYKRNMFATESYIIDNAQAIQIKKMEPDEQLRNDHV 427
Cdd:TIGR04523 193 KNKLLKLELLLSNLKKKIQKNKSLESQISELKK---------QNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQN 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 428 NLRghapldRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQ-------LEEAVQLKKISEAGKDLLY--KQL 498
Cdd:TIGR04523 264 KIK------KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQdwnkelkSELKNQEKKLEEIQNQISQnnKII 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 499 SGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSL-----------DSKDPKHSHMKAQKRGKEQQLDIM 567
Cdd:TIGR04523 338 SQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYkqeiknlesqiNDLESKIQNQEKLNQQKDEQIKKL 417
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 568 NKQYKQLESRLDEILSRIAKETEEIKDLEQqltegQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKE 647
Cdd:TIGR04523 418 QQEKELLEKEIERLKETIIKNNSEIKDLTN-----QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELK 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 648 TLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQ-EQHEVNASLQQTQGDLSAYEAE-----LEARLNLRDTEASQ 721
Cdd:TIGR04523 493 SKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLEsEKKEKESKISDLEDELNKDDFElkkenLEKEIDEKNKEIEE 572
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 722 LKEELEKVTRlTQLEQSALQAELEKERQALKNALgkaqfsEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVV 800
Cdd:TIGR04523 573 LKQTQKSLKK-KQEEKQELIDQKEKEKKDLIKEI------EEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLK 644
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
561-934 |
4.23e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 4.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 561 EQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLTE-GQIAANEALKKDLEGVISGLQEyLGTIKGQATQAQNEC 639
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAlQRLAEYSWDEIDVASAEREIAE-LEAELERLDASSDDL 687
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 640 RKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTqgdlsAYEAELEARL--NLRDT 717
Cdd:COG4913 688 AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARL-----ELRALLEERFaaALGDA 762
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 718 EASQLKEELEKvtrltqlEQSALQAELEKERQALKNALgkAQFSEEKEQENSELHAKLkhlqDDNNllkqqlkDFQNHLN 797
Cdd:COG4913 763 VERELRENLEE-------RIDALRARLNRAEEELERAM--RAFNREWPAETADLDADL----ESLP-------EYLALLD 822
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 798 HVV-DGLVRPEEvaarvdELRRKLKlgagEMNIHSPSDVLGK---SLADLQKQFSEI---LAHSQWERneaqvrERKLQE 870
Cdd:COG4913 823 RLEeDGLPEYEE------RFKELLN----ENSIEFVADLLSKlrrAIREIKERIDPLndsLKRIPFGP------GRYLRL 886
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 871 EMalqQEKLATGQEEFRQACERALEARINFDKRQHEARIQQLENEIHYL--QENLKSMEEIQGLTD 934
Cdd:COG4913 887 EA---RPRPDPEVREFRQELRAVTSGASLFDEELSEARFAALKRLIERLrsEEEESDRRWRARVLD 949
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1424-1638 |
4.28e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 4.28e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1424 IEKTLLKRRSELREADRLLAE--AESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLL 1501
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPEL 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1502 QADA--KDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAERSEdhhLQVLKESETLLQAKR 1579
Cdd:COG3206 260 LQSPviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAE---LEALQAREASLQAQL 336
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 1580 AELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKadLQKALRLGETEVAEK 1638
Cdd:COG3206 337 AQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR--LAEALTVGNVRVIDP 393
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
420-758 |
4.76e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 4.76e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 420 EQLRNDHVNLRGHAPLDRQLED---KEKKISAAQTRLSELHDEIEkaeqQILRATEEFKQLEEavqlkkiseagkdllyk 496
Cdd:COG4913 634 EALEAELDALQERREALQRLAEyswDEIDVASAEREIAELEAELE----RLDASSDDLAALEE----------------- 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 497 QLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKEQQLDimnKQYKQLES 576
Cdd:COG4913 693 QLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD---AVERELRE 769
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 577 RLDEilsRIAKETEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQEYlgtikgqaTQAQNECRKLQDEketllqRLTEV 656
Cdd:COG4913 770 NLEE---RIDALRARLNRAEEELERAMRAFNREWPAETADLDADLESL--------PEYLALLDRLEED------GLPEY 832
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 657 EQE-RDQLEivamdaENMRKELAELESALQEQ--------HEVNASLQQTQ-GDLSAYEAELEARlnlRDTEASQLKEEL 726
Cdd:COG4913 833 EERfKELLN------ENSIEFVADLLSKLRRAireikeriDPLNDSLKRIPfGPGRYLRLEARPR---PDPEVREFRQEL 903
|
330 340 350
....*....|....*....|....*....|..
gi 1622871293 727 EKVTRLTQLEQSALQAELEKERQALKNALGKA 758
Cdd:COG4913 904 RAVTSGASLFDEELSEARFAALKRLIERLRSE 935
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
507-1124 |
6.15e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 6.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 507 KLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDsldsKDPKHSHMKAQKRGKEQ-----QLDIMNKQYKQLESRLDEI 581
Cdd:TIGR02169 174 KALEELEEVEENIERLDLIIDEKRQQLERLRRERE----KAERYQALLKEKREYEGyellkEKEALERQKEAIERQLASL 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 582 LSRIAKETEEIKDLEQQLTEGQI---AANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQ 658
Cdd:TIGR02169 250 EEELEKLTEEISELEKRLEEIEQlleELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEA 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 659 ERDQLeivamdaenmRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLnlrdteasqlkEELEKVTRLTQLEQS 738
Cdd:TIGR02169 330 EIDKL----------LAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEL-----------EEVDKEFAETRDELK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 739 ALQAELEK---ERQALKNALGKAQF-SEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpEEVAARVD 814
Cdd:TIGR02169 389 DYREKLEKlkrEINELKRELDRLQEeLQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL---EQLAADLS 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 815 ELRRKLKlgagemNIHSPSDVLGKSLADLQKQFSEILAHSQWERNEaqVRERKLQEEMALQQEKLATGQ--------EEF 886
Cdd:TIGR02169 466 KYEQELY------DLKEEYDRVEKELSKLQRELAEAEAQARASEER--VRGGRAVEEVLKASIQGVHGTvaqlgsvgERY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 887 RQACERALEAR---------------INFDKRQHEAR--------IQQLENEIHYLQE--------NLKSMEE------I 929
Cdd:TIGR02169 538 ATAIEVAAGNRlnnvvveddavakeaIELLKRRKAGRatflplnkMRDERRDLSILSEdgvigfavDLVEFDPkyepafK 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 930 QGLTDLQLQEADEEKERILAQLRELEKKKKLEDaKSQEQFFGLDKELKKLKKAVATSDKLATAeltiaKDQLKSLHGTVM 1009
Cdd:TIGR02169 618 YVFGDTLVVEDIEAARRLMGKYRMVTLEGELFE-KSGAMTGGSRAPRGGILFSRSEPAELQRL-----RERLEGLKRELS 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1010 KINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQnllrQKEEQFRLEMEKTGVGTGSNSQvlEIEKLKETMERQRI 1089
Cdd:TIGR02169 692 SLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE----QEEEKLKERLEELEEDLSSLEQ--EIENVKSELKELEA 765
|
650 660 670 680
....*....|....*....|....*....|....*....|...
gi 1622871293 1090 EIARLQNVL--------DLTGTDSKGGFENVLEEIAELRREVS 1124
Cdd:TIGR02169 766 RIEELEEDLhkleealnDLEARLSHSRIPEIQAELSKLEEEVS 808
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
435-683 |
7.90e-06 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.60 E-value: 7.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQlkkiseagkdllykqlsgrlqlvnKLRQEALD 514
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEID------------------------KLQAEIAE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 515 LELQMEKQKQEIAekqKEIKDLQIAIDS-------LDSKDPKH--SHMKAQKRGKEQQLDIMNkQYKQLESRLDEILSRI 585
Cdd:COG3883 77 AEAEIEERREELG---ERARALYRSGGSvsyldvlLGSESFSDflDRLSALSKIADADADLLE-ELKADKAELEAKKAEL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 586 AKETEEIKDLEQQLtegqiaanEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEI 665
Cdd:COG3883 153 EAKLAELEALKAEL--------EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAA 224
|
250
....*....|....*...
gi 1622871293 666 VAMDAENMRKELAELESA 683
Cdd:COG3883 225 AAAAAAAAAAAAAAAAAA 242
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1317-1730 |
7.95e-06 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 51.26 E-value: 7.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1317 EHHNLENEVSRLEDIMQHLKSKQQEERWMRASKRQSEKEMEELHHNIDD---LLQEKKSLECEVEELHRTVQK-----RQ 1388
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEdekLLDEKKQFEKIAEELKGKEQElifllQA 447
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1389 QQKDFIDGNVESLMTELEIEKSLKHHEDIVDEiecIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKR 1468
Cdd:pfam05483 448 REKEIHDLEIQLTAIKTSEEHYLKEVEDLKTE---LEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIIN 524
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1469 SLLQTESDAEELErRAQETAINLVKAHQELRLLQADAKDLEQHKI-KQEEILKEINKIVAAEDSDFQCLSKKKEKLTEEL 1547
Cdd:pfam05483 525 CKKQEERMLKQIE-NLEEKEMNLRDELESVREEFIQKGDEVKCKLdKSEENARSIEYEVLKKEKQMKILENKCNNLKKQI 603
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1548 QKLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVL----DRQLGYKKEELHLLQGSMVQAKAD 1623
Cdd:pfam05483 604 ENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIidnyQKEIEDKKISEEKLLEEVEKAKAI 683
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1624 LQKALRLgETEVAEKCNH-IKEVKSLLEELSFQKGELnvqISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNIL 1702
Cdd:pfam05483 684 ADEAVKL-QKEIDKRCQHkIAEMVALMEKHKHQYDKI---IEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLK 759
|
410 420
....*....|....*....|....*...
gi 1622871293 1703 DMLQLENNELQGLKLQHDQKVSELEKTQ 1730
Cdd:pfam05483 760 KQLEIEKEEKEKLKMEAKENTAILKDKK 787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
480-720 |
7.99e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 7.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 480 AVQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDskdpkhshmkAQK 557
Cdd:COG4942 16 AAQADAAAEAEAELeqLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALE----------AEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 558 RGKEQQLDIMNKQYKQLESRLDEILSRIAKeTEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQN 637
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYR-LGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 638 ECRKLQDEKETLLQRLTEVEQERDQLEivaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDT 717
Cdd:COG4942 165 LRAELEAERAELEALLAELEEERAALE---ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
...
gi 1622871293 718 EAS 720
Cdd:COG4942 242 RTP 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1320-2078 |
8.85e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.13 E-value: 8.85e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1320 NLENEVSRLEDIMQHLKSKQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDgnve 1399
Cdd:pfam02463 301 ELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELL---- 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1400 slmteleiEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEE 1479
Cdd:pfam02463 377 --------AKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1480 LERRAQETAINLVKAHQELRLLQADAKDLEQHKiKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEM--- 1556
Cdd:pfam02463 449 EKEELEKQELKLLKDELELKKSEDLLKETQLVK-LQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIisa 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1557 AERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKalrlgetEVA 1636
Cdd:pfam02463 528 HGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVL-------EID 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1637 EKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKhktelkniLDMLQLENNELQGLK 1716
Cdd:pfam02463 601 PILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEG--------LAEKSEVKASLSELT 672
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1717 LQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKC 1796
Cdd:pfam02463 673 KELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEE 752
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1797 DIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNvrKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANV 1876
Cdd:pfam02463 753 EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKL--KVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1877 QDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDIS--EWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQ 1954
Cdd:pfam02463 831 KEEELEELALELKEEQKLEKLAEEELERLEEEItkEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLN 910
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1955 KERESEESKLETSKVTLKEQQHQLEKELTDQK-SKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQ 2033
Cdd:pfam02463 911 LLEEKENEIEERIKEEAEILLKYEEEPEELLLeEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERY 990
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1622871293 2034 LVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKE 2078
Cdd:pfam02463 991 NKDELEKERLEEEKKKLIRAIIEETCQRLKEFLELFVSINKGWNK 1035
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
435-602 |
9.06e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 49.15 E-value: 9.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVqlkkiseagkdllyKQLSGRLQLVNKLRqEALD 514
Cdd:COG1579 29 LPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARI--------------KKYEEQLGNVRNNK-EYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 515 LELQMEKQKQEIAEKQKEIKDLQIAIDSLdskdpkhshmKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKD 594
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEEL----------EEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
....*...
gi 1622871293 595 LEQQLTEG 602
Cdd:COG1579 164 EREELAAK 171
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
475-1052 |
9.36e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 9.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 475 KQLEEAVQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHS- 551
Cdd:PRK03918 149 KVVRQILGLDDYENAYKNLgeVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEk 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 552 ------HMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLTEgqiaaNEALKKDLEGVISgLQEYL 625
Cdd:PRK03918 229 evkeleELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE-----LKELKEKAEEYIK-LSEFY 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 626 GTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELES---ALQEQHEVNASLQQTQGDLS 702
Cdd:PRK03918 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEErheLYEEAKAKKEELERLKKRLT 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 703 AYEAE-LEARLNLRDTEASQLKEELEKVT-RLTQLEQSAlqAELEKERQALKNALGK-----AQFSEEKEQE-NSELHAK 774
Cdd:PRK03918 383 GLTPEkLEKELEELEKAKEEIEEEISKITaRIGELKKEI--KELKKAIEELKKAKGKcpvcgRELTEEHRKElLEEYTAE 460
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 775 LKHLQDDNNLLKQQLKDFQNHlnhvvdgLVRPEEVAARVDELRRKLKLGAGEMNIHSPSDVLG-KSLADLQKQFSEILAH 853
Cdd:PRK03918 461 LKRIEKELKEIEEKERKLRKE-------LRELEKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEK 533
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 854 SQWERNEAQVRERKLQEEMALQQEKLATGQ-----EEFRQACERALEARINFDKRQHEARIQQLE------NEIHYLQEN 922
Cdd:PRK03918 534 LIKLKGEIKSLKKELEKLEELKKKLAELEKkldelEEELAELLKELEELGFESVEELEERLKELEpfyneyLELKDAEKE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 923 LKSMEEIQGLTDLQLQEADEEKERILAQLRELEKK-KKLEDAKSQEQFFGLDKELKKLKKAVATsdklATAELTIAKDQL 1001
Cdd:PRK03918 614 LEREEKELKKLEEELDKAFEELAETEKRLEELRKElEELEKKYSEEEYEELREEYLELSRELAG----LRAELEELEKRR 689
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 1002 KSLHGTVMKINQERaEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQ 1052
Cdd:PRK03918 690 EEIKKTLEKLKEEL-EEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1501-1878 |
9.37e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 9.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1501 LQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEelqkLQKDVEMAERSEDHHLQVLKESETLLQAKRA 1580
Cdd:TIGR02169 676 LQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1581 ELEKLKSqvtsqqqEMAVLDRQLGYKKEELHLLQgsmvQAKADLQKalRLGETEVAEKCNHIKEVKSLLEELSFQKGELN 1660
Cdd:TIGR02169 752 EIENVKS-------ELKELEARIEELEEDLHKLE----EALNDLEA--RLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1661 VQISERktqlTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLEL 1740
Cdd:TIGR02169 819 QKLNRL----TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1741 ENLQQIAQQQKGEIEWQKQLLERNkreiermtaesralqscveclskeKEDLQEKCDIWEKKLAQTKRVLAAAEENSKME 1820
Cdd:TIGR02169 895 EAQLRELERKIEELEAQIEKKRKR------------------------LSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622871293 1821 QSnLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQD 1878
Cdd:TIGR02169 951 LS-LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1353-1878 |
1.07e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1353 EKEMEELHHNIDDLLQEKKSLECEVEELH----RTVQKRQQQKDFIDGNVESLMTELEIEKSLKHHEDIVDEIECIEKTL 1428
Cdd:PRK02224 198 EKEEKDLHERLNGLESELAELDEEIERYEeqreQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1429 LKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLlqtESDAEELERRAQETAINLVKAHQELRLLQADAKDL 1508
Cdd:PRK02224 278 AEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL---EDRDEELRDRLEECRVAAQAHNEEAESLREDADDL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1509 EQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAERSedhhlqvLKESETLLQAKRAELEKLKSQ 1588
Cdd:PRK02224 355 EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD-------LGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1589 VTSQQQEMAVLDRQLGyKKEELhLLQGSMVQAKADLQKALRLGETEvaEKCNHIKEVKSLLEELSFQKGELNVQIsERKT 1668
Cdd:PRK02224 428 EAELEATLRTARERVE-EAEAL-LEAGKCPECGQPVEGSPHVETIE--EDRERVEELEAELEDLEEEVEEVEERL-ERAE 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1669 QLTLIKQEIEKEEENLQIVLRQMSKHKTELKNilDMLQLEnnELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQ 1748
Cdd:PRK02224 503 DLVEAEDRIERLEERREDLEELIAERRETIEE--KRERAE--ELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELN 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1749 QQKGEIEWQKQLLERnkreIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLA---QTKRVLAAAEENSKME--QSN 1823
Cdd:PRK02224 579 SKLAELKERIESLER----IRTLLAAIADAEDEIERLREKREALAELNDERRERLAekrERKRELEAEFDEARIEeaRED 654
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 1622871293 1824 LEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEkqeaVNSLQEELANVQD 1878
Cdd:PRK02224 655 KERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE----LEELRERREALEN 705
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
569-967 |
1.15e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 51.11 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 569 KQYKQLESRLDE---ILSRIaKETEEIKDLEQQL-TEGQ--IAA------NEALKKdLEGVISGLQEYLGTiKGQATQAQ 636
Cdd:COG3096 229 KAFQDMEAALREnrmTLEAI-RVTQSDRDLFKHLiTEATnyVAAdymrhaNERREL-SERALELRRELFGA-RRQLAEEQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 637 NECRKLQDEKETLLQRLTEVEQE----RDQLEIV--AMDA----ENMRKELAELESALQEQHEVNASLQQTQgdlsayeA 706
Cdd:COG3096 306 YRLVEMARELEELSARESDLEQDyqaaSDHLNLVqtALRQqekiERYQEDLEELTERLEEQEEVVEEAAEQL-------A 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 707 ELEARLNLRDTEASQLKEEL--------EKVTRLTQLEQsALQAeLEKERQ-------ALKNALGKAQFSEEKEQENSEL 771
Cdd:COG3096 379 EAEARLEAAEEEVDSLKSQLadyqqaldVQQTRAIQYQQ-AVQA-LEKARAlcglpdlTPENAEDYLAAFRAKEQQATEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 772 HAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPE--EVAARVDELRRKLKLGAGEMNihspsdVLGKSLADLQKQFSE 849
Cdd:COG3096 457 VLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQawQTARELLRRYRSQQALAQRLQ------QLRAQLAELEQRLRQ 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 850 IL-AHSQWER-NEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARINFDKR--QHEARIQQLEN---EIHYLQEN 922
Cdd:COG3096 531 QQnAERLLEEfCQRIGQQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQleQLRARIKELAArapAWLAAQDA 610
|
410 420 430 440
....*....|....*....|....*....|....*....|....*
gi 1622871293 923 LKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQE 967
Cdd:COG3096 611 LERLREQSGEALADSQEVTAAMQQLLEREREATVERDELAARKQA 655
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1443-1637 |
1.26e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 50.21 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1443 AEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKE- 1521
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEr 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1522 -------------INKIVAAED-SDF-------QCLSKKKEKLTEELQKLQKDVEMAERSedhhlqvLKESETLLQAKRA 1580
Cdd:COG3883 92 aralyrsggsvsyLDVLLGSESfSDFldrlsalSKIADADADLLEELKADKAELEAKKAE-------LEAKLAELEALKA 164
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622871293 1581 ELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKALRLGETEVAE 1637
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
243-784 |
1.34e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.89 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 243 HLRSLESLEGQPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDK--------LNKSLKEEA 314
Cdd:pfam15921 315 YMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDqlqklladLHKREKELS 394
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 315 MLQKQ-------------SCEELKSDLNTKN-ELLKQKTIELTRACQKQYELEQELAfyKIDAKFEPLNYYPSEYAEIDk 380
Cdd:pfam15921 395 LEKEQnkrlwdrdtgnsiTIDHLRRELDDRNmEVQRLEALLKAMKSECQGQMERQMA--AIQGKNESLEKVSSLTAQLE- 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 381 apdespyigksrykrnmfATESYIIDNAQAIQIKKM--EPDEQLRNDhvnlrghapLDRQLEDKEKKISAAQTRLSELHD 458
Cdd:pfam15921 472 ------------------STKEMLRKVVEELTAKKMtlESSERTVSD---------LTASLQEKERAIEATNAEITKLRS 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 459 EIEKAEQQILRATEEFKQLEEA---VQLKKISEAGKD----LLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQK 531
Cdd:pfam15921 525 RVDLKLQELQHLKNEGDHLRNVqteCEALKLQMAEKDkvieILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRL 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 532 EIKDLQIAIDSLDSK----DPKHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLtegqiaan 607
Cdd:pfam15921 605 ELQEFKILKDKKDAKirelEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDY-------- 676
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 608 EALKKDLEGVISGLQEYLGTIKGQATQAQNEcrkLQDEKETllqrLTEVEQERDQLEIVAMDAENM----RKELAELESA 683
Cdd:pfam15921 677 EVLKRNFRNKSEEMETTTNKLKMQLKSAQSE---LEQTRNT----LKSMEGSDGHAMKVAMGMQKQitakRGQIDALQSK 749
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 684 LQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVtrltqleqSALQAELEKERQALKNALGKA--QFS 761
Cdd:pfam15921 750 IQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVL--------RSQERRLKEKVANMEVALDKAslQFA 821
|
570 580
....*....|....*....|....*..
gi 1622871293 762 EEKE----QENSELHAKLKHLQDDNNL 784
Cdd:pfam15921 822 ECQDiiqrQEQESVRLKLQHTLDVKEL 848
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1321-1921 |
1.49e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.45 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1321 LENEVSRLEDIMQHLKSKQQEE-----RWMRASKRQSEK------EMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQ 1389
Cdd:TIGR02169 355 LTEEYAELKEELEDLRAELEEVdkefaETRDELKDYREKleklkrEINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1390 QKDFIDGNVESLmtELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELScTKEKTKNAVEK------- 1462
Cdd:TIGR02169 435 KINELEEEKEDK--ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA-EAEAQARASEErvrggra 511
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1463 ----FTDAKRSLLQTESDAEELERRAQ----------------------ETAINLVKAHQELRllqadAKDLEQHKIKQE 1516
Cdd:TIGR02169 512 veevLKASIQGVHGTVAQLGSVGERYAtaievaagnrlnnvvveddavaKEAIELLKRRKAGR-----ATFLPLNKMRDE 586
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1517 EILKEINKIVAAEDS--DFQCLSKKKEKLTEELQK---LQKDVEMAERSEDHHLQVLKESETL----------LQAKRAE 1581
Cdd:TIGR02169 587 RRDLSILSEDGVIGFavDLVEFDPKYEPAFKYVFGdtlVVEDIEAARRLMGKYRMVTLEGELFeksgamtggsRAPRGGI 666
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1582 L--EKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQKALRlgetEVAEKCNHIKEVKSLLEELSFQKGEL 1659
Cdd:TIGR02169 667 LfsRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASR----KIGEIEKEIEQLEQEEEKLKERLEEL 742
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1660 NVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLEN-NELQGLKLQHDQKVSELEKTQVAVLEEKL 1738
Cdd:TIGR02169 743 EEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLN 822
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1739 ELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRA-----------LQSCVECLSKEKEDLQEKCDIWEKKLAQTK 1807
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGkkeeleeeleeLEAALRDLESRLGDLKKERDELEAQLRELE 902
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1808 RVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLhNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDL 1887
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEY 981
|
650 660 670
....*....|....*....|....*....|....
gi 1622871293 1888 LHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKE 1921
Cdd:TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
416-773 |
1.56e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.72 E-value: 1.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 416 MEPDEQLRNDHVNLRGHAPldRQLEdkekKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLkkiSEAGKDLLY 495
Cdd:COG3096 325 LEQDYQAASDHLNLVQTAL--RQQE----KIERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEA---AEEEVDSLK 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 496 KQLSGRLQLVNKLRQEAldLELQMEKQKQEIAEKQKEIKDLqiaidSLDSKDPKHSHMKAQK-------RGKEQQLDIMN 568
Cdd:COG3096 396 SQLADYQQALDVQQTRA--IQYQQAVQALEKARALCGLPDL-----TPENAEDYLAAFRAKEqqateevLELEQKLSVAD 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 569 KQYKQLESRLdEILSRIAKETEEikdleqqlTEGQIAANEALK-----KDLEGVISGLQEYLGTIKgQATQAQNECRKLQ 643
Cdd:COG3096 469 AARRQFEKAY-ELVCKIAGEVER--------SQAWQTARELLRryrsqQALAQRLQQLRAQLAELE-QRLRQQQNAERLL 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 644 DEketLLQRLTEVEQERDQLEIVAMDAEnmrKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR----LNLRDTeA 719
Cdd:COG3096 539 EE---FCQRIGQQLDAAEELEELLAELE---AQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawLAAQDA-L 611
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 1622871293 720 SQLKEEL-EKVTRLTQLeQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA 773
Cdd:COG3096 612 ERLREQSgEALADSQEV-TAAMQQLLEREREATVERDELAARKQALESQIERLSQ 665
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1601-2206 |
1.64e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1601 RQLGYKKEELHllqgSMVQAKADLQKALRLGETEVAEKCNHIKEVKSLLEELSFQKGELnvqiSERKTQLTLIKQEIEKE 1680
Cdd:PRK03918 172 KEIKRRIERLE----KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKL----EKEVKELEELKEEIEEL 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1681 EENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKlqhdQKVSELEKTQVAVLEEKLELENLQQIaQQQKGEIEWQKQL 1760
Cdd:PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELE----EKVKELKELKEKAEEYIKLSEFYEEY-LDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1761 LERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEEnskMEQSNLEKLELNVRKLQQELDQ 1840
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE---LERLKKRLTGLTPEKLEKELEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1841 LNRDKLSLHNDISAIQQQLQEKQEAVNSLQ---EELANVQDHLNLAKQDLlhTTKHQDVLLSEQTRLQKDISewanrfed 1917
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKkaiEELKKAKGKCPVCGREL--TEEHRKELLEEYTAELKRIE-------- 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1918 cqKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQhQLEKELTDQKSKLDQVLSKVL 1997
Cdd:PRK03918 466 --KELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELE-KKAEEYEKLKEKLIKLKGEIK 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1998 AAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLalqKEADSMRADFSLLRNQFLtERKKAEKQVASLK 2077
Cdd:PRK03918 543 SLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV---EELEERLKELEPFYNEYL-ELKDAEKELEREE 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2078 EALKIQRSQLEKNLLEQKQENScmqkematielvaqdnheRARRLMKELNQMQYEYTElkkqmanqkdleRRQMEISDAM 2157
Cdd:PRK03918 619 KELKKLEEELDKAFEELAETEK------------------RLEELRKELEELEKKYSE------------EEYEELREEY 668
|
570 580 590 600
....*....|....*....|....*....|....*....|....*....
gi 1622871293 2158 RTLKSEVkdeirtslknlnqflpelpADLEAILERNENLEGELESLKEN 2206
Cdd:PRK03918 669 LELSREL-------------------AGLRAELEELEKRREEIKKTLEK 698
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1823-2011 |
1.67e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 50.30 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1823 NLEKLELNVRKLQQELDQLNRdklslhndISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLhtTKHQDVLLSEQT 1902
Cdd:COG4913 236 DLERAHEALEDAREQIELLEP--------IRELAERYAAARERLAELEYLRAALRLWFAQRRLELL--EAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1903 RLQKDISEWANRFEDCQKEEETKQQQ--------LQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQ 1974
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQirgnggdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAAL 385
|
170 180 190
....*....|....*....|....*....|....*..
gi 1622871293 1975 QHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEER 2011
Cdd:COG4913 386 RAEAAALLEALEEELEALEEALAEAEAALRDLRRELR 422
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
261-1099 |
1.69e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.50 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 261 QEAFERFsLEEVERLERDLEKKMIETEELKSKQTRFLEE--IKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELlkQK 338
Cdd:pfam15921 73 KEHIERV-LEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQL--QN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 339 TIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAEIdkapdespyigksrykrnmfatESYIIDNAQAiQIKKMEP 418
Cdd:pfam15921 150 TVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEI----------------------RSILVDFEEA-SGKKIYE 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 419 DEQLRNDHVNLRGHApLDRQLEDKEKKISAAQTRLSELHDEIE--KAEQQ---ILRATEEFKQLEEAVQLKKISEAGkdL 493
Cdd:pfam15921 207 HDSMSTMHFRSLGSA-ISKILRELDTEISYLKGRIFPVEDQLEalKSESQnkiELLLQQHQDRIEQLISEHEVEITG--L 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 494 LYKQLSGRLQlVNKLRQEaldLELQMEKQKQEIAEKQKEIKDLQIAIDSLdskdpkHSHMKAQKRGKEQQLDIMNKQYKQ 573
Cdd:pfam15921 284 TEKASSARSQ-ANSIQSQ---LEIIQEQARNQNSMYMRQLSDLESTVSQL------RSELREAKRMYEDKIEELEKQLVL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 574 LESRLDEILSRIAKETEEIKDLEQQLtegqiaanEALKKDLEgvisglqeylgtikgqatQAQNECRKLQDEKETLLQRL 653
Cdd:pfam15921 354 ANSELTEARTERDQFSQESGNLDDQL--------QKLLADLH------------------KREKELSLEKEQNKRLWDRD 407
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 654 T----EVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLnlrdteaSQLKEELEKV 729
Cdd:pfam15921 408 TgnsiTIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQL-------ESTKEMLRKV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 730 TRltqlEQSALQAELEKERQALKNALGKAQfseEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVvdglvrpEEV 809
Cdd:pfam15921 481 VE----ELTAKKMTLESSERTVSDLTASLQ---EKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHL-------RNV 546
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 810 AARVDELRRKLklgagemnihSPSDVLGKSLADLQKQFSEILAHSQWERNEAQVRERKLQEEMALQQEKLatgqEEFRqa 889
Cdd:pfam15921 547 QTECEALKLQM----------AEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLEL----QEFK-- 610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 890 cerALEARINFDKRQHEARIQQLENE----IHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKS 965
Cdd:pfam15921 611 ---ILKDKKDAKIRELEARVSDLELEkvklVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKS 687
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 966 QEQffgldkelKKLKKAVATSDKLATAELTIAKDQLKSLHGT-------VMKINQERAEELQEAERFSRKAAQAARDLTR 1038
Cdd:pfam15921 688 EEM--------ETTTNKLKMQLKSAQSELEQTRNTLKSMEGSdghamkvAMGMQKQITAKRGQIDALQSKIQFLEEAMTN 759
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 1039 AEAEIELLqnllrqKEEQFRLEMEKTGVGTGSNSQVLEIEKLKETMERQRIEIARLQNVLD 1099
Cdd:pfam15921 760 ANKEKHFL------KEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKVANMEVALD 814
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
126-167 |
1.87e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.77 E-value: 1.87e-05
10 20 30 40
....*....|....*....|....*....|....*....|...
gi 1622871293 126 KLEVLNLSYNLIGKIEKLDKLLKLRELNLSYN-KISKIEGIEN 167
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
1321-1873 |
1.89e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 50.29 E-value: 1.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1321 LENEVSRLEDIMQHLKSKQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVES 1400
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1401 LMTELEIEKslKHHEDIvdeiecieKTLLKRRSELREADRLLAEAESELsctKEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:PRK01156 244 LSSLEDMKN--RYESEI--------KTAESDLSMELEKNNYYKELEERH---MKIINDPVYKNRNYINDYFKYKNDIENK 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1481 ERRAQETAINLVK---AHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDsDFQCLSKKKEKLTEELQKLQKDVEMA 1557
Cdd:PRK01156 311 KQILSNIDAEINKyhaIIKKLSVLQKDYNDYIKKKSRYDDLNNQILELEGYEM-DYNSYLKSIESLKKKIEEYSKNIERM 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1558 ERSEDHHLQVLKESETLLQAKRAE----LEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKAdlqkALRLGET 1633
Cdd:PRK01156 390 SAFISEILKIQEIDPDAIKKELNEinvkLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVC----GTTLGEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1634 EVAEKCNHIKEVKSLLEE-LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDML-QLENNE 1711
Cdd:PRK01156 466 KSNHIINHYNEKKSRLEEkIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKInELKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1712 LQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQI----AQQQKGEIEWQKQLLERNKREIE---------------RMT 1772
Cdd:PRK01156 546 DKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIdietNRSRSNEIKKQLNDLESRLQEIEigfpddksyidksirEIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1773 AESRALQSCVECLSKEK---EDLQEKCDIWEKKLAQTKRVlaaaEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLH 1849
Cdd:PRK01156 626 NEANNLNNKYNEIQENKiliEKLRGKIDNYKKQIAEIDSI----IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLE 701
|
570 580
....*....|....*....|....
gi 1622871293 1850 NDISAIQQQLQEKQEAVNSLQEEL 1873
Cdd:PRK01156 702 STIEILRTRINELSDRINDINETL 725
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1822-2204 |
2.14e-05 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 50.08 E-value: 2.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1822 SNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEavNSLQEELANVQDHlnlaKQDLLHTTKHQDVLLSEQ 1901
Cdd:COG5022 787 VDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKRE--KKLRETEEVEFSL----KAEVLIQKFGRSLKAKKR 860
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1902 TRLQKDisewANRFEDCQKEEETKQQQLQVLQSEIEE-NKLKLVQQEMIFQRLQKERESEESKLETSKVTLKE----QQH 1976
Cdd:COG5022 861 FSLLKK----ETIYLQSAQRVELAERQLQELKIDVKSiSSLKLVNLELESEIIELKKSLSSDLIENLEFKTELiarlKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1977 QLEKELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFS 2056
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTK 1016
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2057 LL--RNQFLTERKKAEKQVASLKEALKIQRSqleknllEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYT 2134
Cdd:COG5022 1017 QLkeLPVEVAELQSASKIISSESTELSILKP-------LQKLKGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLEST 1089
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 2135 ELKKQMANQKDLE---RRQMEISDAMRTLKSEVKdeirtSLKNLNQ---FLPELPADLEAILERNENLEGELESLK 2204
Cdd:COG5022 1090 ENLLKTINVKDLEvtnRNLVKPANVLQFIVAQMI-----KLNLLQEiskFLSQLVNTLEPVFQKLSVLQLELDGLF 1160
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1718-1938 |
2.43e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 2.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1718 QHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCD 1797
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1798 IWEKKLAQTKRVLAAAEENSKME----QSNLEKLELNVRKLQqeldQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEEL 1873
Cdd:COG4942 101 AQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLK----YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622871293 1874 ANVQDHLNLAKQDLLHTTKHQDVLLseqTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEE 1938
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLL---ARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1766-2020 |
2.73e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1766 REIERMTAESRALQSCVECLskekEDLQEKCDIWEKkLAQTKRVLAAAeenskMEQSNLEKLELNVRKLQQELDQLNRDK 1845
Cdd:COG4913 235 DDLERAHEALEDAREQIELL----EPIRELAERYAA-ARERLAELEYL-----RAALRLWFAQRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1846 LSLHNDISAIQQQLQEKQEAVNSLQEELANVQDhlnlakQDLlhttkhqdvllseqTRLQKDISEWANRFEDCQKEEETK 1925
Cdd:COG4913 305 ARLEAELERLEARLDALREELDELEAQIRGNGG------DRL--------------EQLEREIERLERELEERERRRARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1926 QQQLQVL-------QSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTD---QKSKLDQVLSK 1995
Cdd:COG4913 365 EALLAALglplpasAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASlerRKSNIPARLLA 444
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1622871293 1996 VLAA--------EERVRIL-------QEEERWGESLEKTL 2020
Cdd:COG4913 445 LRDAlaealgldEAELPFVgelievrPEEERWRGAIERVL 484
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1526-1775 |
2.82e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 2.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1526 VAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGY 1605
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1606 KKEELHLLQGSMVQAKADLQKALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTlikqeiekeeeNLQ 1685
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA-----------ELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1686 IVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQvavleekleLENLQQIAQQQKGEIEWQKQL--LER 1763
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKEL---------AELAAELAELQQEAEELEALIarLEA 234
|
250
....*....|..
gi 1622871293 1764 NKREIERMTAES 1775
Cdd:COG4942 235 EAAAAAERTPAA 246
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
148-179 |
3.47e-05 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 43.00 E-value: 3.47e-05
10 20 30
....*....|....*....|....*....|..
gi 1622871293 148 KLRELNLSYNKISKIEGIENMCNLQKLNLAGN 179
Cdd:pfam12799 2 NLEVLDLSNNQITDIPPLAKLPNLETLDLSGN 33
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
265-770 |
3.53e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 49.37 E-value: 3.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 265 ERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEEL--KSDLNTKNELLKQKTIEL 342
Cdd:PTZ00121 1248 ERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAkkKAEEAKKADEAKKKAEEA 1327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 343 TRACQKQYELEQELAfyKIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDNAQAIQIKKMEPDEQL 422
Cdd:PTZ00121 1328 KKKADAAKKKAEEAK--KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 423 RNDHVnlrghapldRQLEDKEKKISAAQTRLSELH--DEIEKAEQQILRATEEFKQLEEAvqlKKISEAGKDLLYKQLSG 500
Cdd:PTZ00121 1406 KADEL---------KKAAAAKKKADEAKKKAEEKKkaDEAKKKAEEAKKADEAKKKAEEA---KKAEEAKKKAEEAKKAD 1473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 501 RLQLVNKLRQEALDLELQME--KQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLESRL 578
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEeaKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 579 DEILSRI--AKETEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNEcrklqDEKETLLQRLTEV 656
Cdd:PTZ00121 1554 AEELKKAeeKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKA-----EEAKIKAEELKKA 1628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 657 EQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQL- 735
Cdd:PTZ00121 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELk 1708
|
490 500 510
....*....|....*....|....*....|....*....
gi 1622871293 736 ----EQSALQAELEKERQALKNALGKAQFSEEKEQENSE 770
Cdd:PTZ00121 1709 kkeaEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
436-711 |
3.81e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 48.67 E-value: 3.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 436 DRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQlkkiseagkdllykqlsgrlqlvnKLRQEALDL 515
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE------------------------ALQAEIDKL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 516 ELQMEKQKQEIAEKQKEIKD----LQIAIDS-------LDSKDPKhshmkaqkrgkeqqlDIMNKQykqleSRLDEILSR 584
Cdd:COG3883 71 QAEIAEAEAEIEERREELGEraraLYRSGGSvsyldvlLGSESFS---------------DFLDRL-----SALSKIADA 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 585 IAKETEEIKDLEQQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLE 664
Cdd:COG3883 131 DADLLEELKADKAELEA-KKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAE 209
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1622871293 665 IVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEAR 711
Cdd:COG3883 210 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAAGAAG 256
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1472-1669 |
4.06e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1472 QTESDAEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQ 1551
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1552 KDVE-----MAERSEDHHLQVLKESETLLQAKRAeLEKLKSQVTSQQQEMAVLDRQLgykkEELHLLQGSMVQAKADLQK 1626
Cdd:COG4942 104 EELAellraLYRLGRQPPLALLLSPEDFLDAVRR-LQYLKYLAPARREQAEELRADL----AELAALRAELEAERAELEA 178
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1622871293 1627 ALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQ 1669
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1433-1638 |
4.10e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.22 E-value: 4.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1433 SELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQETAINLVKAHQELRLLQADAKDLEQHK 1512
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1513 IKQEEILKE-------------INKIVAAEDSD--------FQCLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKES 1571
Cdd:COG4942 100 EAQKEELAEllralyrlgrqppLALLLSPEDFLdavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622871293 1572 ETLLQAKRAELEKLKSQvtsQQQEMAVLDRQLGYKKEELHLLQgsmvQAKADLQKALRLGETEVAEK 1638
Cdd:COG4942 180 LAELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQ----QEAEELEALIARLEAEAAAA 239
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
439-621 |
6.12e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 48.09 E-value: 6.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 439 LEDKEKKISAAQTRLSELHDE----IEKAEQQILRATEEFKQLEEavQLKKISEAGKDL--LYKQLSGRLQLVNKL---- 508
Cdd:PHA02562 204 IEEQRKKNGENIARKQNKYDElveeAKTIKAEIEELTDELLNLVM--DIEDPSAALNKLntAAAKIKSKIEQFQKVikmy 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 509 ---------RQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKdpKHSHMKAQKRGKEQQLDIMNKQY-------- 571
Cdd:PHA02562 282 ekggvcptcTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEI--MDEFNEQSKKLLELKNKISTNKQslitlvdk 359
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 572 -KQLESRLDEILSRIAKETEEIKDLEQQLTEGQIA-ANEALKKDLEGVISGL 621
Cdd:PHA02562 360 aKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTkSELVKEKYHRGIVTDL 411
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1919-2164 |
6.21e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 6.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1919 QKEEETkQQQLQVLQSEIEENKLKLVQQEMIFQRLQKER-----ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVL 1993
Cdd:COG3206 168 LRREEA-RKALEFLEEQLPELRKELEEAEAALEEFRQKNglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1994 SKVLAAEERVRILQEEERwGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSmradfslLRNQFLTERKKAEKQV 2073
Cdd:COG3206 247 AQLGSGPDALPELLQSPV-IQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAA-------LRAQLQQEAQRILASL 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2074 ASLKEALKIQRSQLEKNLLEQKQEnscmqkematielvaqdnherarrlMKELNQMQYEYTELKKQMANQKDL------E 2147
Cdd:COG3206 319 EAELEALQAREASLQAQLAQLEAR-------------------------LAELPELEAELRRLEREVEVARELyesllqR 373
|
250
....*....|....*..
gi 1622871293 2148 RRQMEISDAMRTLKSEV 2164
Cdd:COG3206 374 LEEARLAEALTVGNVRV 390
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
260-795 |
6.52e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.60 E-value: 6.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 260 RQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKT 339
Cdd:PTZ00121 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 340 IELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEY---AEIDKAPDESPYIGKSRYKRNMFATESYIIDNAQAIQIKKM 416
Cdd:PTZ00121 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 417 EPD--EQLRNDHVNLRGHAPLDRQLEDKEKKISAAQTRLSELH--DEIEKAEQQilRATEEFKQLEEAVQLKKISEAGKD 492
Cdd:PTZ00121 1468 EAKkaDEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEA--KKADEAKKAEEAKKADEAKKAEEK 1545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 493 LLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIA-IDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQY 571
Cdd:PTZ00121 1546 KKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEArIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 572 KQLESRLDEILSRIAKETEEIKDLEQ---QLTEGQIAANEALKKDLEGV-----ISGLQEYLGTIKGQATQAQNECRKLQ 643
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEElkkAEEENKIKAAEEAKKAEEDKkkaeeAKKAEEDEKKAAEALKKEAEEAKKAE 1705
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 644 DEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEarlNLRDTEASQLK 723
Cdd:PTZ00121 1706 ELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE---EIRKEKEAVIE 1782
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622871293 724 EELEKVTRLTQLEQSALQAELEKERQALK--NALGKAQFSEEKEQENSElhakLKHLQDDNNLLKQQLKDFQNH 795
Cdd:PTZ00121 1783 EELDEEDEKRRMEVDKKIKDIFDNFANIIegGKEGNLVINDSKEMEDSA----IKEVADSKNMQLEEADAFEKH 1852
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
515-724 |
7.06e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.09 E-value: 7.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 515 LELQMEKQKQEIAEKQKEIKDLQIAIDSLDSkdpkhshmkaqkrgkEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKD 594
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQKNGLVDL---------------SEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 595 LEQQLTEGQIAANEALK----KDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRL-TEVEQERDQLEIvamD 669
Cdd:COG3206 245 LRAQLGSGPDALPELLQspviQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLqQEAQRILASLEA---E 321
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1622871293 670 AENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKE 724
Cdd:COG3206 322 LEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEE 376
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
438-963 |
7.51e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 7.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVqlkkiseagkdllyKQLSGRLQLVNKLrqealdlel 517
Cdd:PRK01156 198 ELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL--------------NELSSLEDMKNRY--------- 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 518 qmekqKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQ 597
Cdd:PRK01156 255 -----ESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIK 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 598 QLTEGQIAANEALKK-----DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQerdQLEIVAMDAEN 672
Cdd:PRK01156 330 KLSVLQKDYNDYIKKksrydDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISE---ILKIQEIDPDA 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 673 MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTE------ASQLKEE-LEKVTRLTQLEQSALQAELE 745
Cdd:PRK01156 407 IKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcGTTLGEEkSNHIINHYNEKKSRLEEKIR 486
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 746 K-ERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAAR-----VDELRRK 819
Cdd:PRK01156 487 EiEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRykslkLEDLDSK 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 820 ----LKLGAGEMNI-----HSPSDVLGKSLADLQKQFSEILAH---------SQWERNEAQVR----ERKLQEEMALQQE 877
Cdd:PRK01156 567 rtswLNALAVISLIdietnRSRSNEIKKQLNDLESRLQEIEIGfpddksyidKSIREIENEANnlnnKYNEIQENKILIE 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 878 KLATGQEEFRQacERALEARINFDKRQHEARIQQLENEIHY----LQENLKSMEEIQGLTDLQLQEADEEKERILAQLRE 953
Cdd:PRK01156 647 KLRGKIDNYKK--QIAEIDSIIPDLKEITSRINDIEDNLKKsrkaLDDAKANRARLESTIEILRTRINELSDRINDINET 724
|
570
....*....|
gi 1622871293 954 LEKKKKLEDA 963
Cdd:PRK01156 725 LESMKKIKKA 734
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
433-969 |
8.10e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 8.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 433 APLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLKKISEAGKDLLYKQLSGRLQLVNKLRQEA 512
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 513 LDLELQMEKQKQEIAEKQKEiKDLQIAIDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEE- 591
Cdd:TIGR00618 376 TLTQHIHTLQQQKTTLTQKL-QSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCe 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 592 -------------IKDLEQQL-TEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVE 657
Cdd:TIGR00618 455 klekihlqesaqsLKEREQQLqTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGE 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 658 QERDQLEIVamdAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQLEQ 737
Cdd:TIGR00618 535 QTYAQLETS---EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA 611
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 738 SALQAELEKERQALKN---ALGKAQFSEEKEQENSELHAKLKHL------------QDDNNLLKQQLKDFQNHLNHVVDG 802
Cdd:TIGR00618 612 CEQHALLRKLQPEQDLqdvRLHLQQCSQELALKLTALHALQLTLtqervrehalsiRVLPKELLASRQLALQKMQSEKEQ 691
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 803 LVRPEEVAARVDELRRKL--KLGAGEMNIHSPSDVLGKSLADLQKQfSEILAHSQWERnEAQVRERKLQEEMALQQEKLA 880
Cdd:TIGR00618 692 LTYWKEMLAQCQTLLRELetHIEEYDREFNEIENASSSLGSDLAAR-EDALNQSLKEL-MHQARTVLKARTEAHFNNNEE 769
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 881 TGQEEFRQACERALEARINFDKRQHEARIQQLENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILA----------- 949
Cdd:TIGR00618 770 VTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEeksatlgeith 849
|
570 580
....*....|....*....|
gi 1622871293 950 QLRELEKKKKLEDAKSQEQF 969
Cdd:TIGR00618 850 QLLKYEECSKQLAQLTQEQA 869
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1824-1982 |
1.01e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 46.07 E-value: 1.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1824 LEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLS--EQ 1901
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNnkEY 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1902 TRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKE 1981
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAK 171
|
.
gi 1622871293 1982 L 1982
Cdd:COG1579 172 I 172
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1335-1559 |
1.03e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1335 LKSKQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESLMTEL-EIEKSLKH 1413
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1414 HEDIVDEieciektLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT-ESDAEELERRAQETAINLV 1492
Cdd:COG4942 102 QKEELAE-------LLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEElRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622871293 1493 KAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAER 1559
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
76-181 |
1.66e-04 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 46.19 E-value: 1.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 76 SHAGVRYITEALikklTKQDNLALIKSLNLSLSKDGGKKFKyiENLEKCIKLEVLNLSYNLIGK--IEKLDKLLK----- 148
Cdd:cd00116 178 GDAGIRALAEGL----KANCNLEVLDLNNNGLTDEGASALA--ETLASLKSLEVLNLGDNNLTDagAAALASALLspnis 251
|
90 100 110
....*....|....*....|....*....|....*....
gi 1622871293 149 LRELNLSYNKI------SKIEGIENMCNLQKLNLAGNEI 181
Cdd:cd00116 252 LLTLSLSCNDItddgakDLAEVLAEKESLLELDLRGNKF 290
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
573-759 |
1.69e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.93 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 573 QLESRLDEILSRIAKETEEIKDLEQQLTEGQIAANEALKK----DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKET 648
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKnglvDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAA 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 649 LLQRLTEVEQERDQL----EIVAMDAE--NMRKELAELESALQEQHEvnaslqqtqgDLSAYEAELEARLNLRDTEASQL 722
Cdd:COG3206 245 LRAQLGSGPDALPELlqspVIQQLRAQlaELEAELAELSARYTPNHP----------DVIALRAQIAALRAQLQQEAQRI 314
|
170 180 190
....*....|....*....|....*....|....*..
gi 1622871293 723 KEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQ 759
Cdd:COG3206 315 LASLEAELEALQAREASLQAQLAQLEARLAELPELEA 351
|
|
| LRR_8 |
pfam13855 |
Leucine rich repeat; |
170-220 |
1.71e-04 |
|
Leucine rich repeat;
Pssm-ID: 404697 [Multi-domain] Cd Length: 61 Bit Score: 41.36 E-value: 1.71e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 1622871293 170 NLQKLNLAGNEIEHIPVWLGKKLKSLRVLNLKGNKISSL--QDISKLKPLQDL 220
Cdd:pfam13855 2 NLRSLDLSNNRLTSLDDGAFKGLSNLKVLDLSNNLLTTLspGAFSGLPSLRYL 54
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
435-1087 |
1.77e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLKKISEAGKDLLYKQLSGRLQLV----NKLRQ 510
Cdd:pfam01576 73 LEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLedqnSKLSK 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 511 EALDLELQMEKQKQEIAEKQKEIKDLQIAI-----------DSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLESRLD 579
Cdd:pfam01576 153 ERKLLEERISEFTSNLAEEEEKAKSLSKLKnkheamisdleERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIA 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 580 EILSRIAKETEEIKDLEQQLTEGQIAANEALKK--DLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLlqrLTEVE 657
Cdd:pfam01576 233 ELRAQLAKKEEELQAALARLEEETAQKNNALKKirELEAQISELQEDLESERAARNKAEKQRRDLGEELEAL---KTELE 309
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 658 QERDQLEIVAMDAENMRKELAELESALQEQHEVnaslqqtqgdlsaYEAELEARLNLRDTEASQLKEELEKVTRltqleq 737
Cdd:pfam01576 310 DTLDTTAAQQELRSKREQEVTELKKALEEETRS-------------HEAQLQEMRQKHTQALEELTEQLEQAKR------ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 738 saLQAELEKERQALknalgkaqfseekEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNhvvdglvrpeEVAARVDEL- 816
Cdd:pfam01576 371 --NKANLEKAKQAL-------------ESENAELQAELRTLQQAKQDSEHKRKKLEGQLQ----------ELQARLSESe 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 817 RRKLKLGAGEMNIHSPSDVLGKSLADLQKQFSEIlahsqweRNEAQVRERKLQEEMALqqeklatGQEEFRQaceralea 896
Cdd:pfam01576 426 RQRAELAEKLSKLQSELESVSSLLNEAEGKNIKL-------SKDVSSLESQLQDTQEL-------LQEETRQ-------- 483
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 897 rinfdKRQHEARIQQLENEIHYLQENLKSMEE--------IQGLTdLQLQEADEEKERILAQLRELE--KKKKLEDAKSQ 966
Cdd:pfam01576 484 -----KLNLSTRLRQLEDERNSLQEQLEEEEEakrnverqLSTLQ-AQLSDMKKKLEEDAGTLEALEegKKRLQRELEAL 557
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 967 EQFFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMK--------------INQERAEELQEAERFSRKAAQA 1032
Cdd:pfam01576 558 TQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKkqkkfdqmlaeekaISARYAEERDRAEAEAREKETR 637
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1033 ARDLTRAEAEIELLQNLLRQKEEQFRLEME-----KTGVGtgsnSQVLEIEKLKETMERQ 1087
Cdd:pfam01576 638 ALSLARALEEALEAKEELERTNKQLRAEMEdlvssKDDVG----KNVHELERSKRALEQQ 693
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1863-2113 |
1.84e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1863 QEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEwanrfedCQKEEETKQQQLQVLQSEIeenklk 1942
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA-------LARRIRALEQELAALEAEL------ 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1943 lvqqemifQRLQKERESEESKLETSKVTLKEQQHQLEKelTDQKSKLDQVLS--KVLAAEERVRILQEEERWGESLEKTL 2020
Cdd:COG4942 86 --------AELEKEIAELRAELEAQKEELAELLRALYR--LGRQPPLALLLSpeDFLDAVRRLQYLKYLAPARREQAEEL 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2021 SQTKRELSEREQQLVEKSGELLALQKEADSmradfslLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLEQKQENSC 2100
Cdd:COG4942 156 RADLAELAALRAELEAERAELEALLAELEE-------ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|...
gi 1622871293 2101 MQKEMATIELVAQ 2113
Cdd:COG4942 229 IARLEAEAAAAAE 241
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
472-789 |
2.00e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.83 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 472 EEFKQLEEAVQLKKISEAGKDLLYKQLSGRLQLVNKL---RQEALDLELQMEKQKQEIAEKQKEIKDLqiaidsldskdp 548
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALLDKIdrqKEETEQLKQQLAQAPAKLRQAQAELEAL------------ 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 549 khshmkaqkrgKEQQLDIMNKQYkqlesrldeilsriakETEEIKDLEQQLTEGQIAANEAlkkdlegvisglQEYLGTI 628
Cdd:PRK11281 107 -----------KDDNDEETRETL----------------STLSLRQLESRLAQTLDQLQNA------------QNDLAEY 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 629 KGQATQAQNECRKLQDEKETLLQRLTEVeqeRDQLEIVAMDAENMRKELAELESAlqEQHEVNASLQQTQgdlsayeAEL 708
Cdd:PRK11281 148 NSQLVSLQTQPERAQAALYANSQRLQQI---RNLLKGGKVGGKALRPSQRVLLQA--EQALLNAQNDLQR-------KSL 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 709 EARLNLRDTEASQLKEELEKVTRLtQLEQSALQAELEKERQALknalgkaqfSEE--KEQENSELHAKLKHlqddNNLLK 786
Cdd:PRK11281 216 EGNTQLQDLLQKQRDYLTARIQRL-EHQLQLLQEAINSKRLTL---------SEKtvQEAQSQDEAARIQA----NPLVA 281
|
...
gi 1622871293 787 QQL 789
Cdd:PRK11281 282 QEL 284
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
270-596 |
2.09e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 270 EEVERLERDLEKKMIETEELK----------SKQTRFLEEIKNQDKLnksLKEEAMLQKQSCEELKSDlntknelLKQKT 339
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIEnrldelsqelSDASRKIGEIEKEIEQ---LEQEEEKLKERLEELEED-------LSSLE 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 340 IELTRACQKQYELEQElafykIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNMFATESYIIDNAQAIQ--IKKME 417
Cdd:TIGR02169 751 QEIENVKSELKELEAR-----IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEqkLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 418 PDEQLRNDHVN--LRGHAPLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEeavqlKKISEAGKDLly 495
Cdd:TIGR02169 826 LEKEYLEKEIQelQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK-----KERDELEAQL-- 898
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 496 KQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKEQQLDIMN------- 568
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEpvnmlai 978
|
330 340
....*....|....*....|....*...
gi 1622871293 569 KQYKQLESRLDEILSRIAKETEEIKDLE 596
Cdd:TIGR02169 979 QEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
435-959 |
2.14e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 2.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLE-----------EAVQLKKISEAGKDLLYKQLSGRLQ 503
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEkeleklnnkynDLKKQKEELENELNLLEKEKLNIQK 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 504 LVNKLRQEALDLELQM---EKQKQEIAEKQKEIKDLQ----IAIDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLES 576
Cdd:TIGR04523 188 NIDKIKNKLLKLELLLsnlKKKIQKNKSLESQISELKkqnnQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 577 RLDEILSRIAKETEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEV 656
Cdd:TIGR04523 268 QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQL 347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 657 EQERDQLEivaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKvtrltqLE 736
Cdd:TIGR04523 348 KKELTNSE---SENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK------LQ 418
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 737 QSALQAELEKERQALKNALGKAQFSEEKEQeNSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLvrpeevaarvDEL 816
Cdd:TIGR04523 419 QEKELLEKEIERLKETIIKNNSEIKDLTNQ-DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNL----------EQK 487
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 817 RRKLKLGAGEMN-IHSPSDVLGKSLADLQKQFSEILAHSQWERNEAQVRERKLQE--------EMALQQEKLATGQEEFR 887
Cdd:TIGR04523 488 QKELKSKEKELKkLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDledelnkdDFELKKENLEKEIDEKN 567
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622871293 888 QACERALEARINFDKRQHEA--RIQQLENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILAQLRELEKKKK 959
Cdd:TIGR04523 568 KEIEELKQTQKSLKKKQEEKqeLIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
1357-1972 |
2.32e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 46.97 E-value: 2.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1357 EELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKD--FIDGNVEslmtelEIEKSLkhhEDIVDEIEciektllKRRSE 1434
Cdd:TIGR01612 1125 QKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADkaISNDDPE------EIEKKI---ENIVTKID-------KKKNI 1188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1435 LREADRLLAE-AESELSCTK-EKTKNAVEKFTDAKRSLLQTESDAEEleRRAQETAINLVKAHQELRLLQADAKDLEQHK 1512
Cdd:TIGR01612 1189 YDEIKKLLNEiAEIEKDKTSlEEVKGINLSYGKNLGKLFLEKIDEEK--KKSEHMIKAMEAYIEDLDEIKEKSPEIENEM 1266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1513 IKQEEILKEIN--KIVAAEDSDFQCLSKKKEKLTEELQklQKDVEMAE-RSEDHHLQVLKESetlLQAKRAELEKLKSQV 1589
Cdd:TIGR01612 1267 GIEMDIKAEMEtfNISHDDDKDHHIISKKHDENISDIR--EKSLKIIEdFSEESDINDIKKE---LQKNLLDAQKHNSDI 1341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1590 TSQQQEMAVLdrqlgYKKEELHLLQGSMVQAKADLQKALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQ------- 1662
Cdd:TIGR01612 1342 NLYLNEIANI-----YNILKLNKIKKIIDEVKEYTKEIEENNKNIKDELDKSEKLIKKIKDDINLEECKSKIEstlddkd 1416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1663 ISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQG-LKLQHDQKVSELEKTQVAVLEEKLELE 1741
Cdd:TIGR01612 1417 IDECIKKIKELKNHILSEESNIDTYFKNADENNENVLLLFKNIEMADNKSQHiLKIKKDNATNDHDFNINELKEHIDKSK 1496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1742 NLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRALQsCVECLSKEKEDLQEKcdIWEKKLAQTKRVLAAAEENSKMEQ 1821
Cdd:TIGR01612 1497 GCKDEADKNAKAIEKNKELFEQYKKDVTELLNKYSALA-IKNKFAKTKKDSEII--IKEIKDAHKKFILEAEKSEQKIKE 1573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1822 SNLEKLELnvrklqqELDQLNRDKLSlhNDISAIQQQLQEKQEAVNSLQEELANVQDHL----NLAKQDLLHTTKHQDVL 1897
Cdd:TIGR01612 1574 IKKEKFRI-------EDDAAKNDKSN--KAAIDIQLSLENFENKFLKISDIKKKINDCLketeSIEKKISSFSIDSQDTE 1644
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1898 LSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEM-----IFQRLQKERESEESKLETSKVTLK 1972
Cdd:TIGR01612 1645 LKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKnyeigIIEKIKEIAIANKEEIESIKELIE 1724
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
482-731 |
2.40e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 46.75 E-value: 2.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 482 QLKKISEAGKDLLYKQLSGRLQLVNKLrqeaLDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKE 561
Cdd:NF012221 1504 TLKLTAKAGSNRLEFKGTGHNDGLGYI----LDNVVATSESSQQADAVSKHAKQDDAAQNALADKERAEADRQRLEQEKQ 1579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 562 QQLDIMNKQYKQLES------------RLDEILSRIAKETEEIKDLEQQLTEGQIAANEALKKD-------LEGVISGLQ 622
Cdd:NF012221 1580 QQLAAISGSQSQLEStdqnaletngqaQRDAILEESRAVTKELTTLAQGLDALDSQATYAGESGdqwrnpfAGGLLDRVQ 1659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 623 EYLGTIKGQATQAQNECR-----KLQDEKETLLQRLTEVEQ-ERDQLEI------VAMDAENMRKE-LAELESALQEQHE 689
Cdd:NF012221 1660 EQLDDAKKISGKQLADAKqrhvdNQQKVKDAVAKSEAGVAQgEQNQANAeqdiddAKADAEKRKDDaLAKQNEAQQAESD 1739
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1622871293 690 VNASLQQTQ--GDLSAYEAELEARLNLRDTEASQLKEElEKVTR 731
Cdd:NF012221 1740 ANAAANDAQsrGEQDASAAENKANQAQADAKGAKQDES-DKPNR 1782
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
507-764 |
2.54e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 2.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 507 KLRQEALDLEL--QMEK-QKQEIAEKQKEIKDLQIAIDSLDSKdpkhshMKAQKRGKEQQldimNKQYKQLESRLDEILS 583
Cdd:PHA02562 154 KLVEDLLDISVlsEMDKlNKDKIRELNQQIQTLDMKIDHIQQQ------IKTYNKNIEEQ----RKKNGENIARKQNKYD 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 584 RIAKETEEIKDLEQQLTEgQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKE--TLLQ-------RLT 654
Cdd:PHA02562 224 ELVEEAKTIKAEIEELTD-ELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVcpTCTQqisegpdRIT 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 655 EVEQERDQLEIVAMDAENMRKELAELESALQEQ----HEVNASLQQTQGDLSAYEAelearlnlrdtEASQLKEELEKVT 730
Cdd:PHA02562 303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQskklLELKNKISTNKQSLITLVD-----------KAKKVKAAIEELQ 371
|
250 260 270
....*....|....*....|....*....|....
gi 1622871293 731 RLTQLEQSALqAELEKERQALKNAlgKAQFSEEK 764
Cdd:PHA02562 372 AEFVDNAEEL-AKLQDELDKIVKT--KSELVKEK 402
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
245-728 |
2.60e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 2.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 245 RSLESLEGQPVTTQDRQEAFERfSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSL----KEEAML--QK 318
Cdd:PRK03918 245 KELESLEGSKRKLEEKIRELEE-RIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELreieKRLSRLeeEI 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 319 QSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQ-ELAFYKIDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYKRNM 397
Cdd:PRK03918 324 NGIEERIKELEEKEERLEELKKKLKELEKRLEELEErHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 398 FATESYIIDnaqaiQIKKMEPDEQLRNDHVN----LRGHAPL-DRQLEDKEKKisaaqTRLSELHDEIEKAEQQILRATE 472
Cdd:PRK03918 404 EEEISKITA-----RIGELKKEIKELKKAIEelkkAKGKCPVcGRELTEEHRK-----ELLEEYTAELKRIEKELKEIEE 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 473 EFKQL-EEAVQLKKISEAGKDLLykQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEikdlqiaidsldskdpKHS 551
Cdd:PRK03918 474 KERKLrKELRELEKVLKKESELI--KLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKE----------------KLI 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 552 HMKAQKRGKEQQLdimnKQYKQLESRLDEILSRIAKETEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQEYLgtikgq 631
Cdd:PRK03918 536 KLKGEIKSLKKEL----EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYL------ 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 632 atQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQ--GDLSAYEAELE 709
Cdd:PRK03918 606 --ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLElsRELAGLRAELE 683
|
490 500
....*....|....*....|..
gi 1622871293 710 ARLNLRDTEAS---QLKEELEK 728
Cdd:PRK03918 684 ELEKRREEIKKtleKLKEELEE 705
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1813-2144 |
2.70e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1813 AEENSKMEQSnlEKLELNVRKLQQELDQLNRD-----KLSLHND----ISAIQQQLQEKQEAVNSLQEELANVQDHLNLA 1883
Cdd:PRK04863 793 AEREELAERY--ATLSFDVQKLQRLHQAFSRFigshlAVAFEADpeaeLRQLNRRRVELERALADHESQEQQQRSQLEQA 870
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1884 KQDLLHTTKHQ-DVLLSEQTRLQKdisewanRFEDCQKEEEtkqqQLQVLQSEIEENKLKLVQQEMIFQRLQkereSEES 1962
Cdd:PRK04863 871 KEGLSALNRLLpRLNLLADETLAD-------RVEEIREQLD----EAEEAKRFVQQHGNALAQLEPIVSVLQ----SDPE 935
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1963 KLETskvtLKEQQHQLEKELTDQKSK---LDQVLSKV--LAAEERVRILQEEERWGESL-------EKTLSQTKRELSER 2030
Cdd:PRK04863 936 QFEQ----LKQDYQQAQQTQRDAKQQafaLTEVVQRRahFSYEDAAEMLAKNSDLNEKLrqrleqaEQERTRAREQLRQA 1011
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2031 EQQLVEKSGELLALQKEADSMRAdfslLRNQFLTERKKAEKQV-ASLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIE 2109
Cdd:PRK04863 1012 QAQLAQYNQVLASLKSSYDAKRQ----MLQELKQELQDLGVPAdSGAEERARARRDELHARLSANRSRRNQLEKQLTFCE 1087
|
330 340 350
....*....|....*....|....*....|....*
gi 1622871293 2110 LvaqdnheRARRLMKELNQMQYEYTELKKQMANQK 2144
Cdd:PRK04863 1088 A-------EMDNLTKKLRKLERDYHEMREQVVNAK 1115
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1744-1928 |
2.71e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 2.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1744 QQIAQQQKgEIEWQKQLLERNKREIERMTAESRALQSCVEcLSKEKEDLQEkcdiWEKKLAQTKRVLAAAEENSkmeqSN 1823
Cdd:COG4913 617 AELAELEE-ELAEAEERLEALEAELDALQERREALQRLAE-YSWDEIDVAS----AEREIAELEAELERLDASS----DD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1824 LEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLhTTKHQDVLLSEQTR 1903
Cdd:COG4913 687 LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL-EERFAAALGDAVER 765
|
170 180 190
....*....|....*....|....*....|
gi 1622871293 1904 -----LQKDISEWANRFEDCQKEEETKQQQ 1928
Cdd:COG4913 766 elrenLEERIDALRARLNRAEEELERAMRA 795
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
590-771 |
2.79e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 590 EEIKDLEQQLTEGQIAANEALKKD-LEGVISGLQEYLGTIKGQATQAQNECRK---------LQDEKETLLQRLTEVEQE 659
Cdd:COG3206 148 ELAAAVANALAEAYLEQNLELRREeARKALEFLEEQLPELRKELEEAEAALEEfrqknglvdLSEEAKLLLQQLSELESQ 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 660 RDQLEIVAMDAENMRKEL-AELESALQEQHEVNAS--LQQTQGDLSAYEAELeARLNLRDTEA---------------SQ 721
Cdd:COG3206 228 LAEARAELAEAEARLAALrAQLGSGPDALPELLQSpvIQQLRAQLAELEAEL-AELSARYTPNhpdvialraqiaalrAQ 306
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 1622871293 722 LKEELEKVTRLTQLEQSALQAELEKERQALKNALGKAQFSEEKEQENSEL 771
Cdd:COG3206 307 LQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRL 356
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
442-537 |
2.93e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 442 KEKKISAAQtrlSELHDEIEKAEQQILRATEEFKQLEEAVQLKKiseagkdllyKQLSGRLQLVNKLRQEALDLELQMEK 521
Cdd:PRK12704 55 KKEALLEAK---EEIHKLRNEFEKELRERRNELQKLEKRLLQKE----------ENLDRKLELLEKREEELEKKEKELEQ 121
|
90
....*....|....*.
gi 1622871293 522 QKQEIAEKQKEIKDLQ 537
Cdd:PRK12704 122 KQQELEKKEEELEELI 137
|
|
| RNA1 |
COG5238 |
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ... |
76-205 |
3.06e-04 |
|
Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Translation, ribosomal structure and biogenesis];
Pssm-ID: 444072 [Multi-domain] Cd Length: 434 Bit Score: 45.55 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 76 SHAGVRYITEALikkltkQDNLALiKSLNLSLSKDGGKKFKYI-ENLEKCIKLEVLNLSYNLIGK------IEKLDKLLK 148
Cdd:COG5238 277 GAEGAIALAKAL------QGNTTL-TSLDLSVNRIGDEGAIALaEGLQGNKTLHTLNLAYNGIGAqgaialAKALQENTT 349
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 149 LRELNLSYNKISK------IEGIENMCNLQKLNLAGNEI-EHIPVWLGKKLK--SLRVLNLKGNKI 205
Cdd:COG5238 350 LHSLDLSDNQIGDegaialAKYLEGNTTLRELNLGKNNIgKQGAEALIDALQtnRLHTLILDGNLI 415
|
|
| DUF4175 |
pfam13779 |
Domain of unknown function (DUF4175); |
436-726 |
3.63e-04 |
|
Domain of unknown function (DUF4175);
Pssm-ID: 463981 [Multi-domain] Cd Length: 833 Bit Score: 45.75 E-value: 3.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 436 DRQLEDKEKKISAAQTRLSEL------HDEIEKAEQQILRATEEF-KQLEEAVQLKKISEAGKDllykqlsgrLQLVNKL 508
Cdd:pfam13779 481 DGDLSDAERRLRAAQERLSEAlergasDEEIAKLMQELREALDDYmQALAEQAQQNPQDLQQPD---------DPNAQEM 551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 509 RQEALDlelQMEKQKQEIA------EKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKEQqldiMNKqykqlesrldeiL 582
Cdd:pfam13779 552 TQQDLQ---RMLDRIEELArsgrraEAQQMLSQLQQMLENLQAGQPQQQQQQGQSEMQQA----MDE------------L 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 583 SRIAKETEEIKDLEQQltEGQIAANEALKKDLEGVISGLQEYLGTIKGQ------ATQAQNECRKLQDEKETLLQRLTEV 656
Cdd:pfam13779 613 GDLLREQQQLLDETFR--QLQQQGGQQQGQPGQQGQQGQGQQPGQGGQQpgaqmpPQGGAEALGDLAERQQALRRRLEEL 690
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 657 EQerdqlEIVAMDAENMRKELAElesALQEQHEVNASLQQTQGDlSAYEAELEARLNLRDTeASQLKEEL 726
Cdd:pfam13779 691 QD-----ELKELGGKEPGQALGD---AGRAMRDAEEALGQGDLA-GAVDAQGRALEALRKG-AQQLAEAM 750
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
1749-2171 |
3.65e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 45.94 E-value: 3.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1749 QQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLE 1828
Cdd:pfam01576 2 RQEEEMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAEEMRARLAARKQELEEILHELE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1829 LNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDI 1908
Cdd:pfam01576 82 SRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1909 SEwanrFEDCQKEEETKQQQLQVL----QSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEQQHQL------ 1978
Cdd:pfam01576 162 SE----FTSNLAEEEEKAKSLSKLknkhEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIaelraq 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1979 ----EKELTDQKSKLD-------QVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQL---VEKSGELLAL 2044
Cdd:pfam01576 238 lakkEEELQAALARLEeetaqknNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALkteLEDTLDTTAA 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2045 QKEADSMR-ADFSLLRNQFLTERKKAEKQVASLK--------------EALKIQRSQLEKNLLEQKQENSCMQKEMATIE 2109
Cdd:pfam01576 318 QQELRSKReQEVTELKKALEEETRSHEAQLQEMRqkhtqaleelteqlEQAKRNKANLEKAKQALESENAELQAELRTLQ 397
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622871293 2110 LVAQDNHERARRLMKELNQMQYEYTELKKQMANQKD-LERRQMEISDAMRTLKSEVKDEIRTS 2171
Cdd:pfam01576 398 QAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEkLSKLQSELESVSSLLNEAEGKNIKLS 460
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1321-1591 |
4.35e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 4.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1321 LENEVSRLEDIMQHLKSKQQEERWMR-------ASKRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDF 1393
Cdd:PRK02224 211 LESELAELDEEIERYEEQREQARETRdeadevlEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEE 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1394 IDGNVESLMTELEIEKSlkHHEDIVDEIEciekTLLKRRSELREAdrlLAEAESELSCTKEKTKNAVEKFTDAKRSLLQT 1473
Cdd:PRK02224 291 LEEERDDLLAEAGLDDA--DAEAVEARRE----ELEDRDEELRDR---LEECRVAAQAHNEEAESLREDADDLEERAEEL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1474 ESDAEELERRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKD 1553
Cdd:PRK02224 362 REEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 1554 VEMAER--------------SEDHHLQVLKESETLLQAKRAELEKLKSQVTS 1591
Cdd:PRK02224 442 VEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEE 493
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
458-728 |
4.39e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 458 DEIEKAEQQILRATEEFKQLEEAVQ--LKKISE-AGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIaekqKEIK 534
Cdd:TIGR01612 1500 DEADKNAKAIEKNKELFEQYKKDVTelLNKYSAlAIKNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQKI----KEIK 1575
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 535 DLQIAIDsldskDPKHSHMKAQKRGKEQQLDIMNKQYKQLesRLDEILSRIAKETEEIKDLEQQLTEGQIAANEALKKDL 614
Cdd:TIGR01612 1576 KEKFRIE-----DDAAKNDKSNKAAIDIQLSLENFENKFL--KISDIKKKINDCLKETESIEKKISSFSIDSQDTELKEN 1648
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 615 EGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENmrkelaelESALQEQHEvnasL 694
Cdd:TIGR01612 1649 GDNLNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIK--------EIAIANKEE----I 1716
|
250 260 270
....*....|....*....|....*....|....
gi 1622871293 695 QQTQGDLSAYEAELEARLNLRDTEASQLKEELEK 728
Cdd:TIGR01612 1717 ESIKELIEPTIENLISSFNTNDLEGIDPNEKLEE 1750
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1805-2129 |
4.99e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 4.99e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1805 QTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAK 1884
Cdd:COG4372 21 KTGILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1885 QDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKL 1964
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1965 ETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLAL 2044
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2045 QKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMK 2124
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELA 340
|
....*
gi 1622871293 2125 ELNQM 2129
Cdd:COG4372 341 DLLQL 345
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1717-2026 |
5.15e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.50 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1717 LQHDQKVSELEKTQvavLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESrALQSCVECLSKEKEDLQEKC 1796
Cdd:pfam17380 278 VQHQKAVSERQQQE---KFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQA-AIYAEQERMAMERERELERI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1797 DIWEKKLAQTK-RVLAAAEENSKMEQsnLEKLELNVR----KLQQELDQLNRDKLSLHNDISAIQQQLQE---------- 1861
Cdd:pfam17380 354 RQEERKRELERiRQEEIAMEISRMRE--LERLQMERQqkneRVRQELEAARKVKILEEERQRKIQQQKVEmeqiraeqee 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1862 -KQEAVNSLQEELANVQDHLNLAKQDllhtTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEEtkQQQLQVLQSEIEENK 1940
Cdd:pfam17380 432 aRQREVRRLEEERAREMERVRLEEQE----RQQQVERLRQQEEERKRKKLELEKEKRDRKRAE--EQRRKILEKELEERK 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1941 LKLVQQEMIFQRLQKERESEESKL-ETSKVTLKEQQHQLEKELTDQKSKLDQVLskvLAAEERVRiLQEEERWGESLEKT 2019
Cdd:pfam17380 506 QAMIEEERKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQMR---KATEERSR-LEAMEREREMMRQI 581
|
....*..
gi 1622871293 2020 LSQTKRE 2026
Cdd:pfam17380 582 VESEKAR 588
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1545-2107 |
5.19e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 5.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1545 EELQKLQKDVEMAERSEDHhLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAvldrqlgykKEELHLLQGSMVQAKADL 1624
Cdd:COG4913 235 DDLERAHEALEDAREQIEL-LEPIRELAERYAAARERLAELEYLRAALRLWFA---------QRRLELLEAELEELRAEL 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1625 QKAlrlgETEVAEKCNHIKEVKSLLEELsfqKGELNVQISERKTQLTlikqeieKEEENLQIVLRQMSKHKTELKNILDM 1704
Cdd:COG4913 305 ARL----EAELERLEARLDALREELDEL---EAQIRGNGGDRLEQLE-------REIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1705 LQLENN----ELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIEWQKQLLERNKREIERMTAESRAlQS 1780
Cdd:COG4913 371 LGLPLPasaeEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRD-AL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1781 CVECLSKEKE--------DLQEKCDIW----EKKL-----------AQTKRVLAAAEENSKMEQSNLEKlelnVRKLQQE 1837
Cdd:COG4913 450 AEALGLDEAElpfvgeliEVRPEEERWrgaiERVLggfaltllvppEHYAAALRWVNRLHLRGRLVYER----VRTGLPD 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1838 LDQLNRDKLSLHNDISAiqqqlqEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKH---QDVLLSE-QTRLQKDISEWAN 1913
Cdd:COG4913 526 PERPRLDPDSLAGKLDF------KPHPFRAWLEAELGRRFDYVCVDSPEELRRHPRaitRAGQVKGnGTRHEKDDRRRIR 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1914 RF----EDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETS--KVTLKEQQHQLEkELTDQKS 1987
Cdd:COG4913 600 SRyvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSwdEIDVASAEREIA-ELEAELE 678
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1988 KLDQVLSKVLAAEERVRILQEEErwgESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERK 2067
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAEL---EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERF 755
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 1622871293 2068 KAEKQVASLKEALKIQRSQLEKNLLEQKQENSCMQKEMAT 2107
Cdd:COG4913 756 AAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
1762-1992 |
5.39e-04 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 44.80 E-value: 5.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1762 ERNKReIERMTAESRALQSCVECLSKEKEDLQEKCDIWEKKLAQTKRV--LAAAEENSKMEQSNLEKLELNVRKLQQELD 1839
Cdd:pfam15905 91 EQDKR-LQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVneLLKAKFSEDGTQKKMSSLSMELMKLRNKLE 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1840 QLNRDKLSLHNDIsaiQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQ 1919
Cdd:pfam15905 170 AKMKEVMAKQEGM---EGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEKYKLDIA 246
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 1920 KEEET---KQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKvtlKEQQHQLEKELTDQKSKLDQV 1992
Cdd:pfam15905 247 QLEELlkeKNDEIESLKQSLEEKEQELSKQIKDLNEKCKLLESEKEELLREY---EEKEQTLNAELEELKEKLTLE 319
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
246-780 |
5.47e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 246 SLESLEGQPVTTQDRQEAFE------RFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAM---- 315
Cdd:PRK02224 221 EIERYEEQREQARETRDEADevleehEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDdlla 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 316 ------LQKQSCEELKSDLNTKNELLKQkTIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAEIDKAPDEspyig 389
Cdd:PRK02224 301 eaglddADAEAVEARREELEDRDEELRD-RLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEE----- 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 390 ksrykrnmfaTESYIIDNAQAIQikkmEPDEQLRNdhvnlrghapLDRQLEDKEKKISAAQTRLSELHDEIEKAEQQI-- 467
Cdd:PRK02224 375 ----------AREAVEDRREEIE----ELEEEIEE----------LRERFGDAPVDLGNAEDFLEELREERDELREREae 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 468 LRAT--EEFKQLEEAVQLK---KISEAGKDLlykQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDS 542
Cdd:PRK02224 431 LEATlrTARERVEEAEALLeagKCPECGQPV---EGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEA 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 543 ldskdpkhshmkaqkrgkEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLTEGQIAANEAlkkdlegvisglq 622
Cdd:PRK02224 508 ------------------EDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEK------------- 556
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 623 eylgtiKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVA---MDAENMRKELAELESALQEQHEVNASLQQTQG 699
Cdd:PRK02224 557 ------REAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRtllAAIADAEDEIERLREKREALAELNDERRERLA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 700 DLSAYEAELEARLN-LRDTEASQLKEELEkvTRLTQLEQSAlqAELEKERQALKNALGKAqfsEEKEQENSELHAKLKHL 778
Cdd:PRK02224 631 EKRERKRELEAEFDeARIEEAREDKERAE--EYLEQVEEKL--DELREERDDLQAEIGAV---ENELEELEELRERREAL 703
|
..
gi 1622871293 779 QD 780
Cdd:PRK02224 704 EN 705
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
551-1555 |
5.94e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 5.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 551 SHMKAQKRGKEQQLDIMNKQYKQLESRLDEI------LSRIAKETEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQEy 624
Cdd:TIGR02168 168 SKYKERRKETERKLERTRENLDRLEDILNELerqlksLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQE- 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 625 lgtikgQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAE----NMRKELAELESALQEQHEVNASLQQTQGD 700
Cdd:TIGR02168 247 ------ELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyALANEISRLEQQKQILRERLANLERQLEE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 701 LSAYEAELEARLNLRDTEASQLKEELEKVTRLTQlEQSALQAELEKERQALKNALGKAQfsEEKEQENSELHAKLKHLQD 780
Cdd:TIGR02168 321 LEAQLEELESKLDELAEELAELEEKLEELKEELE-SLEAELEELEAELEELESRLEELE--EQLETLRSKVAQLELQIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 781 DNNLLkQQLKDFQNHLNHvvdglvRPEEVAARVDELRRKLKLGAgemnihspsdvlgksLADLQKQFSEILAhsqwERNE 860
Cdd:TIGR02168 398 LNNEI-ERLEARLERLED------RRERLQQEIEELLKKLEEAE---------------LKELQAELEELEE----ELEE 451
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 861 AQVRERKLQEEMALQQEKLATGQEEFRQAceRALEARINFDKRQHEARIQQLENEIHYLQENLKSMEEIQGLTDL--QLQ 938
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAA--ERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVlsELI 529
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 939 EADEEKER-ILAQLRELEKKKKLEDAKSQEQFFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKInqerAE 1017
Cdd:TIGR02168 530 SVDEGYEAaIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGV----AK 605
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1018 ELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFRL----------------EMEKTGVGTGSNSQvlEIEKLK 1081
Cdd:TIGR02168 606 DLVKFDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIvtldgdlvrpggvitgGSAKTNSSILERRR--EIEELE 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1082 ETMERQRIEIARLQNVLDltgtDSKGGFENVLEEIAELRREVSYQNDYISSMADPFKRRgywyfmpPPPSSKVSSHSSQA 1161
Cdd:TIGR02168 684 EKIEELEEKIAELEKALA----ELRKELEELEEELEQLRKELEELSRQISALRKDLARL-------EAEVEQLEERIAQL 752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1162 TKDSGVGLKYTAStpvrkpcpgqqdgkegsgpppasgywvyspIRSGLHKLFPNRDADSGGDSQEESELDDQEEppfvpp 1241
Cdd:TIGR02168 753 SKELTELEAEIEE------------------------------LEERLEEAEEELAEAEAEIEELEAQIEQLKE------ 796
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1242 pgymmytvlpdgspvpqgmalyapppPLPNNSRPLTpgtvvygpppagapmvygppprnfsipfipmgvlhcnvpehhNL 1321
Cdd:TIGR02168 797 --------------------------ELKALREALD------------------------------------------EL 808
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1322 ENEVSRLEDIMQHLKSKQQEERWMRASKrqsEKEMEELHHNIDDLLQEKKSLECEVEELhrTVQKRQQQKDFIDGNVESL 1401
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAAT---ERRLEDLEEQIEELSEDIESLAAEIEEL--EELIEELESELEALLNERA 883
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1402 MTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELsctkEKTKNAVEKFTDAKRSLLQTEsdAEELE 1481
Cdd:TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRL----EGLEVRIDNLQERLSEEYSLT--LEEAE 957
|
970 980 990 1000 1010 1020 1030
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622871293 1482 RRAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKivaaedsDFQCLSKKKEKLTEELQKLQKDVE 1555
Cdd:TIGR02168 958 ALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE-------RYDFLTAQKEDLTEAKETLEEAIE 1024
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1424-1584 |
6.74e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1424 IEKTLLKRRSELREADRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEELERRAQ--ETAINLVKAHQELRLL 1501
Cdd:COG1579 15 LDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKkyEEQLGNVRNNKEYEAL 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1502 QADAKDLEQHKIKQEEILKEINKIVAAedsdfqcLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRAE 1581
Cdd:COG1579 95 QKEIESLKRRISDLEDEILELMERIEE-------LEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREE 167
|
...
gi 1622871293 1582 LEK 1584
Cdd:COG1579 168 LAA 170
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
1928-2094 |
6.86e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 6.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1928 QLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKVTLKEqqhqLEKELTDQKSKLDQVLSKVLAAEER----- 2002
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELED----LEKEIKRLELEIEEVEARIKKYEEQlgnvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2003 ----VRILQEEErwgESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKE 2078
Cdd:COG1579 87 nnkeYEALQKEI---ESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEA 163
|
170
....*....|....*.
gi 1622871293 2079 ALKIQRSQLEKNLLEQ 2094
Cdd:COG1579 164 EREELAAKIPPELLAL 179
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1501-1715 |
7.04e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 7.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1501 LQADAKDLEQHKIKQEEILKEINKIVAAEDSdfqcLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKESETLLQAKRA 1580
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAA----LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1581 ELEKLKSQVTSQQQEMA----VLDRQLGYKKEELHLLQGSMVQAKAD---LQKALRLGETEVAEKCNHIKEVKSLLEELS 1653
Cdd:COG4942 91 EIAELRAELEAQKEELAellrALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 1654 FQKGELNVQISERKTQLTlikqEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGL 1715
Cdd:COG4942 171 AERAELEALLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
553-757 |
8.29e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 8.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 553 MKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLtegqiaanEALK--KDLEGVISGLQ--EYLGTI 628
Cdd:PRK05771 77 KKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI--------ERLEpwGNFDLDLSLLLgfKYVSVF 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 629 KGQATQAQNECRKLQDEKETLLqrltEVEQERDQLEIVAM----DAENMRKELAELEsaLQEQHEvnaslqQTQGDLSAY 704
Cdd:PRK05771 149 VGTVPEDKLEELKLESDVENVE----YISTDKGYVYVVVVvlkeLSDEVEEELKKLG--FERLEL------EEEGTPSEL 216
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1622871293 705 EAELEARLNLRDTEASQLKEELEKVTRLTQLEQSALQAEL--EKERQALKNALGK 757
Cdd:PRK05771 217 IREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLeiELERAEALSKFLK 271
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
455-1122 |
8.40e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 8.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 455 ELHDEIEKAEQQIL-------------------RATEEFKQLEEAVQLKKISEAGKDLLY--KQLSGRLQLVNKLRQEAL 513
Cdd:pfam02463 174 ALKKLIEETENLAEliidleelklqelklkeqaKKALEYYQLKEKLELEEEYLLYLDYLKlnEERIDLLQELLRDEQEEI 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 514 DLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHS-----HMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKE 588
Cdd:pfam02463 254 ESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLakeeeELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKE 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 589 TEEIKDLEQQLTEGQI--AANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIV 666
Cdd:pfam02463 334 KEEIEELEKELKELEIkrEAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLEL 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 667 AMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQLEQSALQAELEK 746
Cdd:pfam02463 414 ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 747 ERQALKNALGKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDfQNHLNHVVDGLVRPEEVAARVDELRRKLKLGAGE 826
Cdd:pfam02463 494 KLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAV-ENYKVAISTAVIVEVSATADEVEERQKLVRALTE 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 827 MNIHSPSDVLGKSLADLQKQFSEILAHSQwERNEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARINFDKRQHE 906
Cdd:pfam02463 573 LPLGARKLRLLIPKLKLPLKSIAVLEIDP-ILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKG 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 907 ARIQQLENEIHYLQENLKSMEEIQGLTDlQLQEADEEKERILAQLRELEKKKKLEDAKSQEQFFGLDKELKKLKKAVATS 986
Cdd:pfam02463 652 VSLEEGLAEKSEVKASLSELTKELLEIQ-ELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEA 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 987 DKLATAELTIAKDQLKSLHGTVMKINQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFRLEMEKTGV 1066
Cdd:pfam02463 731 QDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEEL 810
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 1067 GTgSNSQVLEIEKLKETMERQRIEIARLQNVLDLTGTDSKGGFENVLEEIAELRRE 1122
Cdd:pfam02463 811 KE-EAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITK 865
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1800-2126 |
9.81e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 9.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1800 EKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDH 1879
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEE 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1880 LNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERES 1959
Cdd:COG4372 110 AEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELL 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1960 EESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSG 2039
Cdd:COG4372 190 KEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILV 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2040 ELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERA 2119
Cdd:COG4372 270 EKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVG 349
|
....*..
gi 1622871293 2120 RRLMKEL 2126
Cdd:COG4372 350 LLDNDVL 356
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
258-636 |
9.92e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 9.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 258 QDRQEAFERFSLEEVERLE--RDLEKKMIETEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELL 335
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADeaKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA 1586
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 336 KQktIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEyaEIDKAPDESPYIGKSRYKRNMfatesyiiDNAQAIQIKK 415
Cdd:PTZ00121 1587 KK--AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE--ELKKAEEEKKKVEQLKKKEAE--------EKKKAEELKK 1654
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 416 MEPDEQLRNdhvnlrghAPLDRQLEDKEKKisAAQTRLSElhDEIEKAEQQILRATEEFKQLEEAVQLKKISEAGKDLLY 495
Cdd:PTZ00121 1655 AEEENKIKA--------AEEAKKAEEDKKK--AEEAKKAE--EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK 1722
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 496 KQlsgrlQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDlQIAidsldsKDPKHSHMKAQKRGKEQQLDIMNKQYKQLE 575
Cdd:PTZ00121 1723 KA-----EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKK-KIA------HLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 576 SRLDEilsrIAKETEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQEYLGTIKGQATQAQ 636
Cdd:PTZ00121 1791 KRRME----VDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEAD 1847
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
555-747 |
1.13e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 44.12 E-value: 1.13e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 555 AQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLTEgqiaaNEALKKDLEGVISGLQEYLGTIKGQATQ 634
Cdd:pfam07888 52 AANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEE-----LEEKYKELSASSEELSEEKDALLAQRAA 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 635 AQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQeqhevnASLQQTQGDLSAYEAELEARLNL 714
Cdd:pfam07888 127 HEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQ------AKLQQTEEELRSLSKEFQELRNS 200
|
170 180 190
....*....|....*....|....*....|...
gi 1622871293 715 RDTEASQLKEELEKVTRLTQLEQSALQAELEKE 747
Cdd:pfam07888 201 LAQRDTQVLQLQDTITTLTQKLTTAHRKEAENE 233
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
1317-1833 |
1.29e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1317 EHHNLENEVSRLEDIMQHLKSKQQ--EERWMRASK------RQSEKEMEELHHNIDD---LLQEKKSLECEVEELHRTVQ 1385
Cdd:pfam05483 290 KKDHLTKELEDIKMSLQRSMSTQKalEEDLQIATKticqltEEKEAQMEELNKAKAAhsfVVTEFEATTCSLEELLRTEQ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1386 KRQQQKDfidgnveslmteleiekslkhhedivDEIECIEKTLLKRRSELREADRLLAEAESELSCTKeKTKNAVEKFTD 1465
Cdd:pfam05483 370 QRLEKNE--------------------------DQLKIITMELQKKSSELEEMTKFKNNKEVELEELK-KILAEDEKLLD 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1466 AKRsllQTESDAEELERRAQETAINLVKAHQELRLLQAD---AKDLEQHKIKQEEILKeinkivaaedSDFQCLSKKKEK 1542
Cdd:pfam05483 423 EKK---QFEKIAEELKGKEQELIFLLQAREKEIHDLEIQltaIKTSEEHYLKEVEDLK----------TELEKEKLKNIE 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1543 LTEELQKLQ-KDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDrQLGYKKEELhLLQGSMVQAK 1621
Cdd:pfam05483 490 LTAHCDKLLlENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRD-ELESVREEF-IQKGDEVKCK 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1622 AD-LQKALRLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTEL-- 1698
Cdd:pfam05483 568 LDkSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELas 647
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1699 --KNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGEIewqKQLLERNKREIERMTAESR 1776
Cdd:pfam05483 648 akQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEM---VALMEKHKHQYDKIIEERD 724
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622871293 1777 ALQSCVEclSKEKEDLQEKCDIwEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRK 1833
Cdd:pfam05483 725 SELGLYK--NKEQEQSSAKAAL-EIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKE 778
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1851-2098 |
1.36e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 44.27 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1851 DISAIQQQLQEKQEAVNSLQ----EELANVQDHLNLAKQDLLHTTKHQDVL-----LSEQTRLQKDI-SEWANRFEDCQK 1920
Cdd:PRK10929 24 DEKQITQELEQAKAAKTPAQaeivEALQSALNWLEERKGSLERAKQYQQVIdnfpkLSAELRQQLNNeRDEPRSVPPNMS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1921 EEETKQQQLQVLQSEIEENKLklVQQEmifqrlqKERESEESKletSKVTLKEQQHQLEKELTDQKSKL----------D 1990
Cdd:PRK10929 104 TDALEQEILQVSSQLLEKSRQ--AQQE-------QDRAREISD---SLSQLPQQQTEARRQLNEIERRLqtlgtpntplA 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1991 QVLSKVLAAEERVRILQEEErwgesLE-KTLSQTKRelsereQQLVEKSGELLalQKEADSMRADFSLLRNQFLTERKKA 2069
Cdd:PRK10929 172 QAQLTALQAESAALKALVDE-----LElAQLSANNR------QELARLRSELA--KKRSQQLDAYLQALRNQLNSQRQRE 238
|
250 260
....*....|....*....|....*....
gi 1622871293 2070 EKQVASLKEALKIQRSQLEKNLLEQKQEN 2098
Cdd:PRK10929 239 AERALESTELLAEQSGDLPKSIVAQFKIN 267
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
1397-1661 |
1.39e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 44.30 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1397 NVESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEaesELSCTKEKTKNAVEKFTDAKRSLLqtesd 1476
Cdd:COG5022 798 KLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAE---VLIQKFGRSLKAKKRFSLLKKETI----- 869
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1477 aeelerrAQETAINLVKAHQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDfqcLSKKKEKLTEELQKLQKDVEM 1556
Cdd:COG5022 870 -------YLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSD---LIENLEFKTELIARLKKLLNN 939
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1557 AERSEDHHLQVLKESETL-LQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKADLQ------KALR 1629
Cdd:COG5022 940 IDLEEGPSIEYVKLPELNkLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGalqestKQLK 1019
|
250 260 270
....*....|....*....|....*....|..
gi 1622871293 1630 LGETEVAEKCNHIKEVKSLLEELSFQKGELNV 1661
Cdd:COG5022 1020 ELPVEVAELQSASKIISSESTELSILKPLQKL 1051
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
502-761 |
1.49e-03 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 43.53 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 502 LQLVNKLRQ-EALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLdskdpkhshmKAQKRGKEQQLDIMNKQYKQLES---- 576
Cdd:COG0497 135 QSLLDPDAQrELLDAFAGLEELLEEYREAYRAWRALKKELEEL----------RADEAERARELDLLRFQLEELEAaalq 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 577 -----RLDE---ILSRIAKETEEIKDLEQQLTEGQIAANEAL---KKDLEGVIS---GLQEYLGTIKGQATQAQNECRKL 642
Cdd:COG0497 205 pgeeeELEEerrRLSNAEKLREALQEALEALSGGEGGALDLLgqaLRALERLAEydpSLAELAERLESALIELEEAASEL 284
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 643 QDEKETL---LQRLTEVEQERDQL------------EIVAMdAENMRKELAELESAlqeqhevnaslqqtQGDLSAYEAE 707
Cdd:COG0497 285 RRYLDSLefdPERLEEVEERLALLrrlarkygvtveELLAY-AEELRAELAELENS--------------DERLEELEAE 349
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1622871293 708 LEarlnlrdteasQLKEELEKV-TRLTQLEQSA---LQAELEKERQALknALGKAQFS 761
Cdd:COG0497 350 LA-----------EAEAELLEAaEKLSAARKKAakkLEKAVTAELADL--GMPNARFE 394
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
1757-2165 |
1.52e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.66 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1757 QKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKCDIWEK-KLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQ 1835
Cdd:pfam10174 174 KKSGEEDWERTRRIAEAEMQLGHLEVLLDQKEKENIHLREELHRRnQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1836 QELDQLNRDKLslhndISAIQQQLQEKQ-EAVNSLQEELANVQDHLnlaKQDLlhtTKHQDVLLSEQTRLQKdiseWANR 1914
Cdd:pfam10174 254 DEVQMLKTNGL-----LHTEDREEEIKQmEVYKSHSKFMKNKIDQL---KQEL---SKKESELLALQTKLET----LTNQ 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1915 FEDCQKEEE-------TKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESeeskletskvtLKEQQHQLEKELTDQKS 1987
Cdd:pfam10174 319 NSDCKQHIEvlkesltAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD-----------LTEEKSTLAGEIRDLKD 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1988 KLDQVLSKVLAAEERVRILQEEERWGE-----------SLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSmradfs 2056
Cdd:pfam10174 388 MLDVKERKINVLQKKIENLQEQLRDKDkqlaglkervkSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRER------ 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2057 lLRNQFLTERKKAEKQVASLKEALkiqrSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYTEL 2136
Cdd:pfam10174 462 -EDRERLEELESLKKENKDLKEKV----SALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKL 536
|
410 420 430
....*....|....*....|....*....|..
gi 1622871293 2137 KKQMA---NQKDLERRQMEISDAMRTLKSEVK 2165
Cdd:pfam10174 537 ENQLKkahNAEEAVRTNPEINDRIRLLEQEVA 568
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
281-768 |
1.79e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.80 E-value: 1.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 281 KKMIETEELKSKQTRFLEEIKNQDKLnKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYK 360
Cdd:TIGR00618 401 ELDILQREQATIDTRTSAFRDLQGQL-AHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKE 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 361 IDAKFEPLNYYPSEYAEIDKAPDESPYIGKSRYkrnmFATESYIIDNAQAIQiKKMEPDEQlrndhvnlrGHAPLDRQLE 440
Cdd:TIGR00618 480 QIHLQETRKKAVVLARLLELQEEPCPLCGSCIH----PNPARQDIDNPGPLT-RRMQRGEQ---------TYAQLETSEE 545
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 441 DKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQL-EEAVQLKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQM 519
Cdd:TIGR00618 546 DVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSkEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQ 625
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 520 EKQKQEIAEKQKEiKDLQIAIDSLD------SKDPKHSHMKAQKRGKEQQLDIMNKQYKQLESR----------LDEILS 583
Cdd:TIGR00618 626 DLQDVRLHLQQCS-QELALKLTALHalqltlTQERVREHALSIRVLPKELLASRQLALQKMQSEkeqltywkemLAQCQT 704
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 584 RIAKETEEIKDLEQQLTEGQIAANeALKKDLEGVISGLQEYLGTIKGQATQAqneCRKLQDEKETLLQRLTEVEQERDQL 663
Cdd:TIGR00618 705 LLRELETHIEEYDREFNEIENASS-SLGSDLAAREDALNQSLKELMHQARTV---LKARTEAHFNNNEEVTAALQTGAEL 780
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 664 EIVAMDAENMRKELAELesalqeQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRlTQLEQSALQAE 743
Cdd:TIGR00618 781 SHLAAEIQFFNRLREED------THLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSA-TLGEITHQLLK 853
|
490 500
....*....|....*....|....*.
gi 1622871293 744 LEKERQALKNALGK-AQFSEEKEQEN 768
Cdd:TIGR00618 854 YEECSKQLAQLTQEqAKIIQLSDKLN 879
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
1319-1842 |
1.82e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.47 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1319 HNLENEVSRLEDIMQHLKSKQQEERWMRASKrqsekemEELHHNIDDLLQEKKSLECEVEELHRtvQKRQQQKDFIDGNV 1398
Cdd:TIGR04523 169 EELENELNLLEKEKLNIQKNIDKIKNKLLKL-------ELLLSNLKKKIQKNKSLESQISELKK--QNNQLKDNIEKKQQ 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1399 ESLMTELEIEKSLKHHEDIVDEIECIEKTLLKRRSELREADRLLAEAESELSctkektknavekftdakrsllQTESDAE 1478
Cdd:TIGR04523 240 EINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN---------------------QLKSEIS 298
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1479 ELERRAQETAINLVKahQELRLLQADAKDLEQHKIKQEEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAE 1558
Cdd:TIGR04523 299 DLNNQKEQDWNKELK--SELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLK 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1559 RSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQgsmvQAKADLQKALRLGETEVAEK 1638
Cdd:TIGR04523 377 KENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLK----ETIIKNNSEIKDLTNQDSVK 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1639 CNHIKEVKSLLEELSFQKGELNVQISERKT---QLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGL 1715
Cdd:TIGR04523 453 ELIIKNLDNTRESLETQLKVLSRSINKIKQnleQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1716 KLQHDQKVSELEKTQVAVLEEKLELENLQQIAQQQKGeiewqkqlLERNKREIERMTAESRALQSCVECLSKEKEDLQEK 1795
Cdd:TIGR04523 533 KKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKE--------IEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKE 604
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1622871293 1796 CDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLN 1842
Cdd:TIGR04523 605 IEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIK 651
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
2065-2205 |
1.85e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2065 ERKKAEKQVASLKEALKiQRSQLEKNLLEQKQENSCMQKEMATIE--LVAQDNHERARRLMKELNQMQYEYTELKKQMAN 2142
Cdd:COG4717 79 ELKEAEEKEEEYAELQE-ELEELEEELEELEAELEELREELEKLEklLQLLPLYQELEALEAELAELPERLEELEERLEE 157
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622871293 2143 QKDLERRQMEISDAMRTLKSEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKE 2205
Cdd:COG4717 158 LRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQE 220
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
483-788 |
1.89e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.56 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 483 LKKISEAGKDLLYKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRGKEQ 562
Cdd:pfam05483 192 IEKMILAFEELRVQAENARLEMHFKLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKAN 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 563 QLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQ---------------------QLTEGQIAANEALKKDLEGVISGL 621
Cdd:pfam05483 272 QLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQrsmstqkaleedlqiatkticQLTEEKEAQMEELNKAKAAHSFVV 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 622 QEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEV---NASLQQTQ 698
Cdd:pfam05483 352 TEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLldeKKQFEKIA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 699 GDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQL---EQSALQAELEKERqaLKNALGKAQF------SEEKEQENS 769
Cdd:pfam05483 432 EELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHylkEVEDLKTELEKEK--LKNIELTAHCdkllleNKELTQEAS 509
|
330
....*....|....*....
gi 1622871293 770 ELHAKLKHLQDDNNLLKQQ 788
Cdd:pfam05483 510 DMTLELKKHQEDIINCKKQ 528
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
248-807 |
1.89e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.67 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 248 ESLEGQPVTTQDRQEAFERFSLEEVERLERDLEKKMIETEELKSKQTRFLEEIKNQ-DKLNKSLKEEAMLQKQSC----E 322
Cdd:pfam12128 361 ERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDlQALESELREQLEAGKLEFneeeY 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 323 ELKSDLNTKNELLKQKTI---ELTRACQKQYELEQelAFYKIDAKFEPLNYYPSEYAEIDKAPDESpyigksryKRNMFA 399
Cdd:pfam12128 441 RLKSRLGELKLRLNQATAtpeLLLQLENFDERIER--AREEQEAANAEVERLQSELRQARKRRDQA--------SEALRQ 510
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 400 TESYIIDNAQAIQIKKMEPDEQLRNDHVNLRGHAPLDRQleDKEKKISAAQTRLSELHDEIEKAEQQ----------ILR 469
Cdd:pfam12128 511 ASRRLEERQSALDELELQLFPQAGTLLHFLRKEAPDWEQ--SIGKVISPELLHRTDLDPEVWDGSVGgelnlygvklDLK 588
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 470 ATE--EFKQLEEAVQlKKISEAGKDL-----LYKQLSGRLQLVNKlRQEALDLELQMEKQkqeiAEKQKEIKDLQIAIDS 542
Cdd:pfam12128 589 RIDvpEWAASEEELR-ERLDKAEEALqsareKQAAAEEQLVQANG-ELEKASREETFART----ALKNARLDLRRLFDEK 662
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 543 LDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILsriaketEEIKDLEQQLTEGQIAANEALKKDLEGVISGLQ 622
Cdd:pfam12128 663 QSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWL-------EEQKEQKREARTEKQAYWQVVEGALDAQLALLK 735
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 623 EylgTIKGQATQAQNECRKLQDEKETLL-------QRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQH------- 688
Cdd:pfam12128 736 A---AIAARRSGAKAELKALETWYKRDLaslgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRYFDWYQETWlqrrprl 812
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 689 -----EVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRltqlEQSALQAELEKerqalKNALGKAQFSEE 763
Cdd:pfam12128 813 atqlsNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSE----NLRGLRCEMSK-----LATLKEDANSEQ 883
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 1622871293 764 KEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPE 807
Cdd:pfam12128 884 AQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSGSG 927
|
|
| PLN03150 |
PLN03150 |
hypothetical protein; Provisional |
145-206 |
1.92e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 178695 [Multi-domain] Cd Length: 623 Bit Score: 43.27 E-value: 1.92e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622871293 145 KLLKLRELNLSYNKIskiEG-----IENMCNLQKLNLAGNEIE-HIPVWLGKkLKSLRVLNLKGNKIS 206
Cdd:PLN03150 440 KLRHLQSINLSGNSI---RGnippsLGSITSLEVLDLSYNSFNgSIPESLGQ-LTSLRILNLNGNSLS 503
|
|
| LRR_4 |
pfam12799 |
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ... |
170-213 |
1.94e-03 |
|
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.
Pssm-ID: 463713 [Multi-domain] Cd Length: 44 Bit Score: 38.00 E-value: 1.94e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 1622871293 170 NLQKLNLAGNEIEHIPvwLGKKLKSLRVLNLKGN-KISSLQDISK 213
Cdd:pfam12799 2 NLEVLDLSNNQITDIP--PLAKLPNLETLDLSGNnKITDLSDLAN 44
|
|
| Surf_Exclu_PgrA |
TIGR04320 |
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface ... |
1785-1887 |
2.32e-03 |
|
SEC10/PgrA surface exclusion domain; This model describes a conserved domain found in surface proteins of a number of Firmutes. Many members have LPXTG C-terminal anchoring motifs and a substantial number have the KxYKxGKxW putative sorting signal at the N-terminus. The tetracycline resistance plasmid pCF10 in Enterococcus faecalis promotes conjugal plasmid transfer in response to sex pheromones, but PgrA/Sec10 encoded by that plasmid, a member of this family, specifically inhibits the ability of cells to receive homologous plasmids. The phenomenon is called surface exclusion.
Pssm-ID: 275124 [Multi-domain] Cd Length: 356 Bit Score: 42.79 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1785 LSKEKEDLQEKCDIWEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLNRDKLSL-HNDISAIQQQLQEKQ 1863
Cdd:TIGR04320 252 PPNSLAALQAKLATAQADLAAAQTALNTAQAALTSAQTAYAAAQAALATAQKELANAQAQALQTaQNNLATAQAALANAE 331
|
90 100
....*....|....*....|....
gi 1622871293 1864 EAVNSLQEELANVQDHLNLAKQDL 1887
Cdd:TIGR04320 332 ARLAKAKEALANLNADLAKKQAAL 355
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
259-734 |
2.32e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 2.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 259 DRQEAFERFSLEEVERLERDLEKKMIETEELKSK----------QTRFLEEIKNQDKLNKSLKEEAMLQKQSCEEL---- 324
Cdd:PRK01156 207 ADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAlnelssledmKNRYESEIKTAESDLSMELEKNNYYKELEERHmkii 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 325 -----------------KSDLNTKNELLKQKTIELTRACQKQYELEQELAFY----KIDAKFEPLNYYPSEYAEidkapD 383
Cdd:PRK01156 287 ndpvyknrnyindyfkyKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKDYndyiKKKSRYDDLNNQILELEG-----Y 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 384 ESPYIG--KSRYKRNMFATESYIIDNAQAIQIKKMEPDEQLRNDHVNLRgHAPLDRQLEDKEKKISAAQTR---LSELHD 458
Cdd:PRK01156 362 EMDYNSylKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKE-LNEINVKLQDISSKVSSLNQRiraLRENLD 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 459 EI----------------------EKAEQQILRATEEFKQLEEAVQLKKISEAGKDLLYKQLSGRLQLVNKLRQEaldle 516
Cdd:PRK01156 441 ELsrnmemlngqsvcpvcgttlgeEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEIN----- 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 517 lQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHSHMKAQKRG-KEQQLDIMNKQYKQLESRLDEIlsriaketeEIKDL 595
Cdd:PRK01156 516 -KSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSlKLEDLDSKRTSWLNALAVISLI---------DIETN 585
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 596 EQQLTEgqiaaneaLKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRK 675
Cdd:PRK01156 586 RSRSNE--------IKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNYKK 657
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 676 ELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQ 734
Cdd:PRK01156 658 QIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSD 716
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
427-1062 |
2.38e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 427 VNLRGHAPLDRQLEDKEKKISAAQTRLSELHDEIEKA-------EQQILRATEEFKQLEEAVQL-KKISEAGKDLlyKQL 498
Cdd:COG3096 282 ELSERALELRRELFGARRQLAEEQYRLVEMARELEELsaresdlEQDYQAASDHLNLVQTALRQqEKIERYQEDL--EEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 499 SGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKEIK----DLQIAIDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQL 574
Cdd:COG3096 360 TERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKsqlaDYQQALDVQQTRAIQYQQAVQALEKARALCGLPDLTPENA 439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 575 ESRLDEILSRIAKETEEIKDLEQQLTEGQIAAN------EALKKDLEGVISG------------------LQEYLGTIKG 630
Cdd:COG3096 440 EDYLAAFRAKEQQATEEVLELEQKLSVADAARRqfekayELVCKIAGEVERSqawqtarellrryrsqqaLAQRLQQLRA 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 631 QATQA------QNECRKLQDEketLLQRLTEVEQERDQLEIVAMDAEnmrKELAELESALQEQHEVNASLQQTQGDLSAY 704
Cdd:COG3096 520 QLAELeqrlrqQQNAERLLEE---FCQRIGQQLDAAEELEELLAELE---AQLEELEEQAAEAVEQRSELRQQLEQLRAR 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 705 EAELEAR----LNLRDTeASQLKEEL-EKVTRLTQLeQSALQAELEKERQALKNALGKAQFSEEKEQENSELHA------ 773
Cdd:COG3096 594 IKELAARapawLAAQDA-LERLREQSgEALADSQEV-TAAMQQLLEREREATVERDELAARKQALESQIERLSQpggaed 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 774 -KLKHLQD------------------------------------DNNLLKQQLKDFQNHLNHVV----------DGLVRP 806
Cdd:COG3096 672 pRLLALAErlggvllseiyddvtledapyfsalygparhaivvpDLSAVKEQLAGLEDCPEDLYliegdpdsfdDSVFDA 751
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 807 EEV--------------------------AAR---VDELRRKL--------KLGAGEMNI----HSPSDVLGKSLA---- 841
Cdd:COG3096 752 EELedavvvklsdrqwrysrfpevplfgrAARekrLEELRAERdelaeqyaKASFDVQKLqrlhQAFSQFVGGHLAvafa 831
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 842 --------DLQKQFSEILAH-SQWERNEAQVRE------------RKLQEEMA-LQQEKLATGQEEFRQACERALEARIN 899
Cdd:COG3096 832 pdpeaelaALRQRRSELERElAQHRAQEQQLRQqldqlkeqlqllNKLLPQANlLADETLADRLEELREELDAAQEAQAF 911
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 900 FdkRQHEARIQQLENEIHYLQENLKSMEEIQgltdLQLQEADEEKERILAQLrelekkKKLEDAKSQEQFFGLDKELKKL 979
Cdd:COG3096 912 I--QQHGKALAQLEPLVAVLQSDPEQFEQLQ----ADYLQAKEQQRRLKQQI------FALSEVVQRRPHFSYEDAVGLL 979
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 980 KKAVATSDKL------ATAELTIAKDQLKSLHGTVMKINQERA----------EELQEAER--------FSRKAAQAARD 1035
Cdd:COG3096 980 GENSDLNEKLrarleqAEEARREAREQLRQAQAQYSQYNQVLAslkssrdakqQTLQELEQeleelgvqADAEAEERARI 1059
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1622871293 1036 ----------------------LTRAEAEIELLQNLLRQKEEQFRLEME 1062
Cdd:COG3096 1060 rrdelheelsqnrsrrsqlekqLTRCEAEMDSLQKRLRKAERDYKQERE 1108
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
277-803 |
2.41e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 277 RDLEKKMIETEElksKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDL-------NTKNELLKQKTIELTRACQKQ 349
Cdd:TIGR04523 57 KNLDKNLNKDEE---KINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLskinseiKNDKEQKNKLEVELNKLEKQK 133
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 350 YELEQELAFYK--IDAKFEPLNYYPSEYAEIDKApdespyigksryKRNMFATESYIIDNAQAIQIKKMEPDEQLRNDHV 427
Cdd:TIGR04523 134 KENKKNIDKFLteIKKKEKELEKLNNKYNDLKKQ------------KEELENELNLLEKEKLNIQKNIDKIKNKLLKLEL 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 428 NLrghapldRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQLKKiseagkdllyKQLSGRLQLVNK 507
Cdd:TIGR04523 202 LL-------SNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----------TQLNQLKDEQNK 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 508 LRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKdpkhshmKAQKRGKEQQLDIMNKQYK--QLESRLDEILSRI 585
Cdd:TIGR04523 265 IKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ-------KEQDWNKELKSELKNQEKKleEIQNQISQNNKII 337
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 586 AKETEEIKDLEQQLTEGQiaaNEALKKDLEgvISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEI 665
Cdd:TIGR04523 338 SQLNEQISQLKKELTNSE---SENSEKQRE--LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 666 vamDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRL---TQLEQSALQA 742
Cdd:TIGR04523 413 ---QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSinkIKQNLEQKQK 489
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622871293 743 ELEKERQALKNALGKAQFSEEK----EQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGL 803
Cdd:TIGR04523 490 ELKSKEKELKKLNEEKKELEEKvkdlTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1854-2253 |
2.55e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 2.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1854 AIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDV--LLSEQTRLQKDISEWANRFEDCQKEEET---KQQQ 1928
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERLEELEERLEElreLEEE 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1929 LQVLQSEIEENKLKLvqqEMIFQRLQKERESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQE 2008
Cdd:COG4717 165 LEELEAELAELQEEL---EELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2009 EERWGESLEKTLSQTKR-ELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQL 2087
Cdd:COG4717 242 EERLKEARLLLLIAAALlALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEEL 321
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2088 EKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQ----MANQKDLE--RRQMEISDAMRTLK 2161
Cdd:COG4717 322 EELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAallaEAGVEDEEelRAALEQAEEYQELK 401
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2162 SEVKdEIRTSLKNLNQFLPELPA--DLEAILERNENLEGELESLKENFPFTINE-GPFEEKLnfsqvhimdEHWRGEALR 2238
Cdd:COG4717 402 EELE-ELEEQLEELLGELEELLEalDEEELEEELEELEEELEELEEELEELREElAELEAEL---------EQLEEDGEL 471
|
410
....*....|....*
gi 1622871293 2239 EKLRHREDRLKAQLR 2253
Cdd:COG4717 472 AELLQELEELKAELR 486
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1649-1868 |
2.74e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 2.74e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1649 LEELSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEK 1728
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1729 TQVAVLEEKLELENLQQI-----------AQQQKGEIEWQKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEKcd 1797
Cdd:COG4942 102 QKEELAELLRALYRLGRQpplalllspedFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL-- 179
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622871293 1798 iwEKKLAQTKRVLAAAEENskmEQSNLEKLELNVRKLQQELDQLNRDKLSLHNDISAIQQQLQEKQEAVNS 1868
Cdd:COG4942 180 --LAELEEERAALEALKAE---RQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
438-793 |
2.88e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 438 QLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQleeavQLKKISEAGKDL--LYKQLSGRLQLVNKLRQEALDL 515
Cdd:TIGR04523 55 ELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKK-----NKDKINKLNSDLskINSEIKNDKEQKNKLEVELNKL 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 516 ELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDpkhSHMKAQKRGKEQQLDIMNKQYKQLESRLDEI----------LSRI 585
Cdd:TIGR04523 130 EKQKKENKKNIDKFLTEIKKKEKELEKLNNKY---NDLKKQKEELENELNLLEKEKLNIQKNIDKIknkllklellLSNL 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 586 AKETEEIKDLEQQLTEGQiAANEALKKDLEGVISGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEI 665
Cdd:TIGR04523 207 KKKIQKNKSLESQISELK-KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 666 VAMDAENMRKELAELESALQEQ--HEVNASLQQTQGDLSayeaELEARLNLRDTEASQLKEE---LEKVTRLTQLEQSAL 740
Cdd:TIGR04523 286 LEKQLNQLKSEISDLNNQKEQDwnKELKSELKNQEKKLE----EIQNQISQNNKIISQLNEQisqLKKELTNSESENSEK 361
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622871293 741 QAELEKERQALKNAL----GKAQFSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQ 793
Cdd:TIGR04523 362 QRELEEKQNEIEKLKkenqSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQ 418
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1575-1795 |
3.20e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 3.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1575 LQAKRAELEKLKSQVTSQQQEMAVLDRQLGYKKEELHLLQGSMVQAKA---DLQKALRLGETEVAEKCNHIKEVKSLLEE 1651
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARrirALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1652 LSFQKGELNVQISERKTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQV 1731
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622871293 1732 AVLEEKLELENLQQIAQQQKGEIEWQKQLLErnkREIERMTAESRALQSCVECLSKEKEDLQEK 1795
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELA---AELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
847-1093 |
3.23e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 3.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 847 FSEILAHSQWERNEAQVRERKLQEEMALQQEKLATGQEEFRQACE--RALEARINfdkrQHEARIQQLENEIHYLQENLK 924
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKqlAALERRIA----ALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 925 SMEEIQGLTDLQLQEADEEKERILAQLRELEKKKKLEDAKSQEQfFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSL 1004
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPED-FLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1005 hgtvmkiNQERAEELQEAERFSRKAAQAARDLTRAEAEIELLQNLLRQKEEQFRLEMEKTgvgtgsNSQVLEIEKLKETM 1084
Cdd:COG4942 166 -------RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAEL------QQEAEELEALIARL 232
|
....*....
gi 1622871293 1085 ERQRIEIAR 1093
Cdd:COG4942 233 EAEAAAAAE 241
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1349-1601 |
3.38e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1349 KRQSEKEMEELHHNIDDLLQEKKSLECEVEELHRTVQKRQQQKDFIDGNVESlmteleiekslkhhEDIVDEIECIEKTL 1428
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVDLSEEA--------------KLLLQQLSELESQL 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1429 LKRRSELREADRLLAEAESELSCTKEKTKNAVEK--FTDAKRSLLQTESDAEELERRAQETainlvkaHQELRLLQADAK 1506
Cdd:COG3206 229 AEARAELAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPN-------HPDVIALRAQIA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1507 DLEQhkikqeEILKEINKIVAAEDSDFQCLSKKKEKLTEELQKLQKDVEMAERSEDHHLQVLKE---SETLLQAKRAELE 1583
Cdd:COG3206 302 ALRA------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREvevARELYESLLQRLE 375
|
250
....*....|....*...
gi 1622871293 1584 KLKSQVTSQQQEMAVLDR 1601
Cdd:COG3206 376 EARLAEALTVGNVRVIDP 393
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1958-2171 |
3.41e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1958 ESEESKLETSKVTLKEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEEErwgESLEKTLSQTKRELSEREQQLvek 2037
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEI---DKLQAEIAEAEAEIEERREEL--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2038 sGELLALQKEADSMRADFSLL---------------RNQFLTERKKAEKQVASLKEALKIQRSQLEknllEQKQENSCMQ 2102
Cdd:COG3883 89 -GERARALYRSGGSVSYLDVLlgsesfsdfldrlsaLSKIADADADLLEELKADKAELEAKKAELE----AKLAELEALK 163
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 2103 KEMATIELVAQDNHERARRLMKELNQMQYEYTELKKQMANQKDLERRQMEISDAMRTLKSEVKDEIRTS 2171
Cdd:COG3883 164 AELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAA 232
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
298-731 |
3.43e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 3.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 298 EEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQELAFYKIDAKFEPLNYYPSEYAE 377
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKI 889
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 378 IDKapdespyigksryKRNMFATESYIIDNaQAIQIKK-MEPDEQLRNDHvnlrghapldrqledKEKKIsaaqTRLSEL 456
Cdd:COG5022 890 DVK-------------SISSLKLVNLELES-EIIELKKsLSSDLIENLEF---------------KTELI----ARLKKL 936
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 457 HDEIEKAEQQILRATEEFKQLEEAVQLKKISEAGKDL--LYKQLsgrlqlvNKLRQEALDLELQMEKQKQEIAEKQKEIK 534
Cdd:COG5022 937 LNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYedLLKKS-------TILVREGNKANSELKNFKKELAELSKQYG 1009
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 535 DLQIAIDSL------------DSKDPKHSHMKAQKRGKEQQLDIMN-KQYKQLESRLDEILSRIAKETEEIKDLEQQL-T 600
Cdd:COG5022 1010 ALQESTKQLkelpvevaelqsASKIISSESTELSILKPLQKLKGLLlLENNQLQARYKALKLRRENSLLDDKQLYQLEsT 1089
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 601 EGQIAANEALKKDLEGVIS-GLQEYLGTIKGQATQAQNecrkLQDEKETLLQRLTEVEQERDQLEIVAMDAENMrKELAE 679
Cdd:COG5022 1090 ENLLKTINVKDLEVTNRNLvKPANVLQFIVAQMIKLNL----LQEISKFLSQLVNTLEPVFQKLSVLQLELDGL-FWEAN 1164
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 680 LESALQEQHEVNaslqqTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTR 731
Cdd:COG5022 1165 LEALPSPPPFAA-----LSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFS 1211
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
457-767 |
3.81e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.42 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 457 HDEIEKAEQQILRATEEfKQLEEAVQLKKISEAGKDllyKQLSGRLQLVNKLRQEALDLELQMEKQKQEIAEKQKE---I 533
Cdd:pfam17380 290 QEKFEKMEQERLRQEKE-EKAREVERRRKLEEAEKA---RQAEMDRQAAIYAEQERMAMERERELERIRQEERKRElerI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 534 KDLQIAIDSLDSKDPKHSHMKAQKRGKE--QQLDIMNKQYKQLESRLDEI------LSRIAKETEEIKDLEQQLTEgqia 605
Cdd:pfam17380 366 RQEEIAMEISRMRELERLQMERQQKNERvrQELEAARKVKILEEERQRKIqqqkveMEQIRAEQEEARQREVRRLE---- 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 606 anEALKKDLEGVISGLQEylgtikgqaTQAQNEcRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQ 685
Cdd:pfam17380 442 --EERAREMERVRLEEQE---------RQQQVE-RLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMI 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 686 EQHEVNASLQQTQGDLSA--------YEAELEARLNLRDTEASQLKEELEKVTRltqlEQSALQAeLEKERQALKNALGk 757
Cdd:pfam17380 510 EEERKRKLLEKEMEERQKaiyeeerrREAEEERRKQQEMEERRRIQEQMRKATE----ERSRLEA-MEREREMMRQIVE- 583
|
330
....*....|
gi 1622871293 758 aqfSEEKEQE 767
Cdd:pfam17380 584 ---SEKARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1323-1727 |
4.17e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1323 NEVSRLEDIMQHLKSKQQEERWMRASKRQSEKEMEELHHNIDDLLQEKKSLEcEVEELHRTVQKRQQqkdfIDGNVESLM 1402
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLLPLYQELEA----LEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1403 TELE-IEKSLKHHEDIVDEIECIEKTLLKRRSELREA-DRLLAEAESELSCTKEKTKNAVEKFTDAKRSLLQTESDAEEL 1480
Cdd:COG4717 146 ERLEeLEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEEL 225
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1481 ERRAQETAINLVKAHQELRLLQADAK--------DLEQHKIKQEEILKEINKIVAAEDS----DFQCLSKKKEKLTEELQ 1548
Cdd:COG4717 226 EEELEQLENELEAAALEERLKEARLLlliaaallALLGLGGSLLSLILTIAGVLFLVLGllalLFLLLAREKASLGKEAE 305
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1549 KLQKDVEMAERSEDHHLQVLKESETLLQAKRAELEKLKSQVTSQQQEMAVLDRQlgykkEELHLLQGSMVQAKADLQKAL 1628
Cdd:COG4717 306 ELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL-----EEELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1629 RLGETEVAEKCNHIKEVKSLLEELSFQKGELNVQISER--------KTQLTLIKQEIEKEEENLQIVLRQMSKHKTELKN 1700
Cdd:COG4717 381 VEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeellealdEEELEEELEELEEELEELEEELEELREELAELEA 460
|
410 420
....*....|....*....|....*..
gi 1622871293 1701 ILDMLQlENNELQGLKLQHDQKVSELE 1727
Cdd:COG4717 461 ELEQLE-EDGELAELLQELEELKAELR 486
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1757-2206 |
4.54e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1757 QKQLLERNKREIERMTAESRALQSCVECLSKEKEDLQEkcdiWEKKLAQTKRVLAAAEEnskmEQSNLEKLeLNVRKLQQ 1836
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEE----LEEELEELEAELEELRE----ELEKLEKL-LQLLPLYQ 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1837 ELDQLNRDKLSLHNDISAIQQQLQ---EKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQdvllseqtrlqkdISEWAN 1913
Cdd:COG4717 133 ELEALEAELAELPERLEELEERLEelrELEEELEELEAELAELQEELEELLEQLSLATEEE-------------LQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1914 RFEDCQKEEETKQQQLQVLQSEIE--ENKLKLVQQEMIFQRLQKERESEESKLE-TSKVTLKEQQHQLEKELTDQKSKLD 1990
Cdd:COG4717 200 ELEELQQRLAELEEELEEAQEELEelEEELEQLENELEAAALEERLKEARLLLLiAAALLALLGLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1991 QVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQlveksgELLALQKEADSMRADFSLLRNQFLTERKKAE 2070
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE------ELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2071 KQVASLKEALKIQRSQLE-KNLLEQKQenscmqkematielvAQDNHERARRLM--KELNQMQYEYTELKKQMANQKDLE 2147
Cdd:COG4717 354 REAEELEEELQLEELEQEiAALLAEAG---------------VEDEEELRAALEqaEEYQELKEELEELEEQLEELLGEL 418
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 2148 RRQMEISDamrtlksevKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKEN 2206
Cdd:COG4717 419 EELLEALD---------EEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
|
| LRR_RI |
cd00116 |
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 ... |
86-216 |
4.67e-03 |
|
Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Pssm-ID: 238064 [Multi-domain] Cd Length: 319 Bit Score: 41.57 E-value: 4.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 86 ALIKKLTKQDNLALIKSLNLSLSKDGGKKFkyIENLEKCI-KLEVLNLSYNLI--GKIEKLDKLL----KLRELNLSYNK 158
Cdd:cd00116 99 GVLESLLRSSSLQELKLNNNGLGDRGLRLL--AKGLKDLPpALEKLVLGRNRLegASCEALAKALranrDLKELNLANNG 176
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622871293 159 ISKiEGIENMC-------NLQKLNLAGNEIEHIPV----WLGKKLKSLRVLNLKGNKISSLqDISKLKP 216
Cdd:cd00116 177 IGD-AGIRALAeglkancNLEVLDLNNNGLTDEGAsalaETLASLKSLEVLNLGDNNLTDA-GAAALAS 243
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
506-903 |
4.82e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 4.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 506 NKLRQEALDLELQMEKQKQEIAEKQKEIKDLQiaiDSLDSKDPKHSHMKAQKRGKEQQLDIMNKQYKQLE------SRLD 579
Cdd:COG3096 281 RELSERALELRRELFGARRQLAEEQYRLVEMA---RELEELSARESDLEQDYQAASDHLNLVQTALRQQEkieryqEDLE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 580 EILSRIAKETEEIKDLEQQLTEGQiAANEALKKDLEGVISGLQEYlgtikGQATQAQnECRKLQDEketllQRLTEVEQE 659
Cdd:COG3096 358 ELTERLEEQEEVVEEAAEQLAEAE-ARLEAAEEEVDSLKSQLADY-----QQALDVQ-QTRAIQYQ-----QAVQALEKA 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 660 RDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNL---------RDTEASQLKEELEK-- 728
Cdd:COG3096 426 RALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELvckiageveRSQAWQTARELLRRyr 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 729 -----VTRLTQLEQSALQAELEKERQA----LKNALGKAQ-----FSEEKEQENSELHAKLKHLQDDNNLLKQQLKDFQN 794
Cdd:COG3096 506 sqqalAQRLQQLRAQLAELEQRLRQQQnaerLLEEFCQRIgqqldAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQ 585
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 795 HLnhvvdglvrpEEVAARVDELRRKlklgagEMNIHSPSDVLGKsladLQKQFSEILAHSQwerNEAQVRERKLQEEMAL 874
Cdd:COG3096 586 QL----------EQLRARIKELAAR------APAWLAAQDALER----LREQSGEALADSQ---EVTAAMQQLLEREREA 642
|
410 420 430
....*....|....*....|....*....|.
gi 1622871293 875 QQEK--LATGQEEFRQACERALEARINFDKR 903
Cdd:COG3096 643 TVERdeLAARKQALESQIERLSQPGGAEDPR 673
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
561-726 |
4.96e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 4.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 561 EQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLTEgqiaaNEALKKDLEGVISGLQEYLGTIKG--QATQAQNE 638
Cdd:COG1579 23 EHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKR-----LELEIEEVEARIKKYEEQLGNVRNnkEYEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 639 CRKLQDEKETLLQRLTEVEQERDQLEivamdaenmrKELAELESALQE-QHEVNASLQQTQGDLSAYEAELEARLNLRDT 717
Cdd:COG1579 98 IESLKRRISDLEDEILELMERIEELE----------EELAELEAELAElEAELEEKKAELDEELAELEAELEELEAEREE 167
|
....*....
gi 1622871293 718 EASQLKEEL 726
Cdd:COG1579 168 LAAKIPPEL 176
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
436-967 |
5.26e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 436 DRQLEDKEKKISAAQTRLSELHDEIEKAEQQILRATEEFKQLEEAVQlkkiseAGKDLLYKQLSGRLQLVNKLRQ---EA 512
Cdd:pfam01576 425 ERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQ------DTQELLQEETRQKLNLSTRLRQledER 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 513 LDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDPKHS------------------HMKAQKRGKEQQLDIMNKQYKQL 574
Cdd:pfam01576 499 NSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAgtlealeegkkrlqreleALTQQLEEKAAAYDKLEKTKNRL 578
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 575 ESRLDEILSRIAKETEEIKDLE-------QQLTEGQIAAN---------EALKKDLEGVISGLQEYLGTIKGQATQAQNE 638
Cdd:pfam01576 579 QQELDDLLVDLDHQRQLVSNLEkkqkkfdQMLAEEKAISAryaeerdraEAEAREKETRALSLARALEEALEAKEELERT 658
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 639 CRKLQDEKETLLQRLTEVEQERDQLE----IVAMDAENMRKELAELESALQEQHEVNASLQQTqgdLSAYEAELEARLNL 714
Cdd:pfam01576 659 NKQLRAEMEDLVSSKDDVGKNVHELErskrALEQQVEEMKTQLEELEDELQATEDAKLRLEVN---MQALKAQFERDLQA 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 715 RDTEASQLKEELEKVTRltqleqsALQAELEKERQALKNAL-GKAQFSEEKEQENSELHAKLKHLQDDNNLLKQ---QLK 790
Cdd:pfam01576 736 RDEQGEEKRRQLVKQVR-------ELEAELEDERKQRAQAVaAKKKLELDLKELEAQIDAANKGREEAVKQLKKlqaQMK 808
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 791 DFQNHLNhvvDGLVRPEEVAARVDELRRKLKLGAGEMnihspsdvlgksladlqKQFSEILAHSQWERNEAQVRERKLQE 870
Cdd:pfam01576 809 DLQRELE---EARASRDEILAQSKESEKKLKNLEAEL-----------------LQLQEDLAASERARRQAQQERDELAD 868
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 871 EMALQQEKLATGQEEfrqaceralearinfdKRQHEARIQQLENEIHYLQENLKSMEEIQGLTDLQLQEADEE--KERIL 948
Cdd:pfam01576 869 EIASGASGKSALQDE----------------KRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTElaAERST 932
|
570 580
....*....|....*....|....
gi 1622871293 949 AQLRE-----LEKKKKLEDAKSQE 967
Cdd:pfam01576 933 SQKSEsarqqLERQNKELKAKLQE 956
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
435-791 |
5.28e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 5.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQIlrateefkqleeavqlkkiseagkDLLYKQLSGRLQLVNKLRQEALD 514
Cdd:pfam10174 294 LKQELSKKESELLALQTKLETLTNQNSDCKQHI------------------------EVLKESLTAKEQRAAILQTEVDA 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 515 LELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKdpkHSHMKAQKRGKEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKD 594
Cdd:pfam10174 350 LRLRLEEKESFLNKKTKQLQDLTEEKSTLAGE---IRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKS 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 595 LEQQL--TEGQIAANEALKKDLEGVISGLQEylgtikgqatQAQNECRklqdeketllQRLTEVEQERDQLEIVAMDAEN 672
Cdd:pfam10174 427 LQTDSsnTDTALTTLEEALSEKERIIERLKE----------QREREDR----------ERLEELESLKKENKDLKEKVSA 486
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 673 MRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQLEQSALQ-----AELEKE 747
Cdd:pfam10174 487 LQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEindriRLLEQE 566
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 1622871293 748 RQALKNALGKAQFSEE------KEQENsELHAKLKHLQDDNNLLKQQLKD 791
Cdd:pfam10174 567 VARYKEESGKAQAEVErllgilREVEN-EKNDKDKKIAELESLTLRQMKE 615
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
2014-2205 |
5.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 5.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2014 ESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLLRNQ---FLTERKKAEKQVASLKEalkiQRSQLEKN 2090
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRiraLEQELAALEAELAELEK----EIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2091 LLEQKQENSCMQKEMATIE-------LVAQDNHERARRLMKELNQ-MQYEYTELKKQMANQKDLERRQMEISDAMRTLK- 2161
Cdd:COG4942 99 LEAQKEELAELLRALYRLGrqpplalLLSPEDFLDAVRRLQYLKYlAPARREQAEELRADLAELAALRAELEAERAELEa 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1622871293 2162 ------------SEVKDEIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKE 2205
Cdd:COG4942 179 llaeleeeraalEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
573-730 |
5.47e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.68 E-value: 5.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 573 QLESRLDEILSRIAKETEEIKDLEQQLtegqiaanEALKKDLEgvisglqeylgTIKGQATQAQNECRKLQDEKETLLQR 652
Cdd:COG1579 14 ELDSELDRLEHRLKELPAELAELEDEL--------AALEARLE-----------AAKTELEDLEKEIKRLELEIEEVEAR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 653 LTEVEQE----RDQLEIVAMDAE--NMRKELAELESALQEQHE----VNASLQQTQGDLSAYEAELEARLNLRDTEASQL 722
Cdd:COG1579 75 IKKYEEQlgnvRNNKEYEALQKEieSLKRRISDLEDEILELMErieeLEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
....*...
gi 1622871293 723 KEELEKVT 730
Cdd:COG1579 155 EAELEELE 162
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1837-2253 |
6.19e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1837 ELDQLNRDKLSLHNDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLlhttkhqdvllseqtrlqKDISEWANrfe 1916
Cdd:PRK04863 280 ERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDY------------------QAASDHLN--- 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1917 dCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSkvtlKEQQHQLEKELTDQKSKLDQVLSKV 1996
Cdd:PRK04863 339 -LVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAA----EEEVDELKSQLADYQQALDVQQTRA 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1997 LAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRAdfslLRNQFL------------T 2064
Cdd:PRK04863 414 IQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQA----AHSQFEqayqlvrkiageV 489
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2065 ERKKAeKQVAslKEALKIQRSQleKNLLEQKQEnscMQKEMATIELVAQdNHERARRLMKELNQmqyeytELKKQMANQK 2144
Cdd:PRK04863 490 SRSEA-WDVA--RELLRRLREQ--RHLAEQLQQ---LRMRLSELEQRLR-QQQRAERLLAEFCK------RLGKNLDDED 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2145 DLERRQMEISDAMRTLKSEVKD--EIRTSLKNLNQFLPELPADLEAILERNENLEGELESLKENFPFTINEGpfEEKLNF 2222
Cdd:PRK04863 555 ELEQLQEELEARLESLSESVSEarERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDS--QDVTEY 632
|
410 420 430
....*....|....*....|....*....|..
gi 1622871293 2223 SQVHImdEHWRG-EALREKLRHREDRLKAQLR 2253
Cdd:PRK04863 633 MQQLL--ERERElTVERDELAARKQALDEEIE 662
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
560-957 |
6.27e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 6.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 560 KEQQLDIMNKQYKQLESRLDEILSRIAKETEEIKDLEQQLTEGQIAANEA---------LKKDLEGVISGLQEYLGTIKG 630
Cdd:pfam01576 10 KEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAETELCAEAeemrarlaaRKQELEEILHELESRLEEEEE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 631 QATQAQNECRKLQDEKETLLQRLTEVEQERD--QLEIVAMDAE-----------------------NMRKELAELESALQ 685
Cdd:pfam01576 90 RSQQLQNEKKKMQQHIQDLEEQLDEEEAARQklQLEKVTTEAKikkleedillledqnsklskerkLLEERISEFTSNLA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 686 EQHEVNASLQQTQGDLSAYEAELEARLNlrdtEASQLKEELEKVTRLTQLEQSALQ---AELEKERQALKNALGKaqfse 762
Cdd:pfam01576 170 EEEEKAKSLSKLKNKHEAMISDLEERLK----KEEKGRQELEKAKRKLEGESTDLQeqiAELQAQIAELRAQLAK----- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 763 eKEQENSELHAKLKHLQDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKL--KLGAGEMNIHSPSDVLGKSL 840
Cdd:pfam01576 241 -KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLgeELEALKTELEDTLDTTAAQQ 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 841 ADLQKQFSEILAHSQWERNEAQVRERKLQEemalQQEKLATGQEEFRQACERALEARINFDKRQheariQQLENEIHYLQ 920
Cdd:pfam01576 320 ELRSKREQEVTELKKALEEETRSHEAQLQE----MRQKHTQALEELTEQLEQAKRNKANLEKAK-----QALESENAELQ 390
|
410 420 430
....*....|....*....|....*....|....*..
gi 1622871293 921 ENLKSMEEIQgltdlqlQEADEEKERILAQLRELEKK 957
Cdd:pfam01576 391 AELRTLQQAK-------QDSEHKRKKLEGQLQELQAR 420
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1684-2097 |
6.33e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1684 LQIVLRQMSKHKTELKNILDMLQLENNELQGLKLQHDQKVSELEKTQVAVLEEKLELENLQqiAQQQKGEIEWQKQLLER 1763
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA--LEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1764 NKREIERMTAESRALQSCVECLSKEKEDLQEKCDI-WEKKLAQTKRVLAAAEENSKMEQSNLEKLELNVRKLQQELDQLN 1842
Cdd:COG4717 154 RLEELRELEEELEELEAELAELQEELEELLEQLSLaTEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1843 RDKLSLHND------------ISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDIS- 1909
Cdd:COG4717 234 NELEAAALEerlkearlllliAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPAl 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1910 ------EWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQEMIFQRLQKERESEESK--LETSKVTLKE---QQHQL 1978
Cdd:COG4717 314 eeleeeELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAalLAEAGVEDEEelrAALEQ 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1979 EKELTDQKSKLDQvLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRADFSLL 2058
Cdd:COG4717 394 AEEYQELKEELEE-LEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELA 472
|
410 420 430
....*....|....*....|....*....|....*....
gi 1622871293 2059 RNQFLTERKKAEKQvaslKEALKIQRSQLEKNLLEQKQE 2097
Cdd:COG4717 473 ELLQELEELKAELR----ELAEEWAALKLALELLEEARE 507
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
620-1056 |
6.65e-03 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 444019 [Multi-domain] Cd Length: 711 Bit Score: 41.88 E-value: 6.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 620 GLQEYLGTIKGQATQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAMDAENMRKELAELESALQEQHEVNASLQQTQG 699
Cdd:COG4995 14 LAALALALLALALLLLLAALAAAALLLLALLALLLALAAAAAAALAAAALALALLAAAALALLLLALALAALALALLAAA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 700 DLSAYEAELEARLNLRDTEASQLKEELEKVTRLTQLEQSALQAELEKERQALKNALGKA-QFSEEKEQENSELHAKLKHL 778
Cdd:COG4995 94 LALALAAAALAALALLAALLALAAAAALLALLAALALLALLAALAAALAAAAAAALAAAlAAAAAAAAAAALLALALALA 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 779 QDDNNLLKQQLKDFQNHLNHVVDGLVRPEEVAARVDELRRKLKLGAGEMNIHSPSDVLGKSLADLQKQFSEILAHSQWER 858
Cdd:COG4995 174 AAALALLALLLAALAAALAAAAAALALLLALLLLAALAAALAAALAALLLALLALAAALLALLLLALLALAAAAAALAAA 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 859 NEAQVRERKLQEEMALQQEKLATGQEEFRQACERALEARINFDKRQHEARIQQLENEIHYLQENLKSMEEIQGLTDLQLQ 938
Cdd:COG4995 254 AAALLALAAALLLLAALAALAAAAAAAALAALALAAALALAAAALALALLLAAAAAAALAALALLLLAALLLLLAALALL 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 939 EADEEKERILAQLRELEKKKKLEDAKSQEQFFGLDKELKKLKKAVATSDKLATAELTIAKDQLKSLHGTVMKINQERAEE 1018
Cdd:COG4995 334 ALLLLLAAAALLAAALAAALALAAALALALLAALLLLLAALLALLLEALLLLLLALLAALLLLAAALLALAAAQLLRLLL 413
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 1622871293 1019 LQEAERFSRKAAQAARDLT-----------RAEAEIELLQNLLRQKEEQ 1056
Cdd:COG4995 414 AALALLLALAAYAAARLALlalieyiilpdRLYAFVQLYQLLIAPIEAE 462
|
|
| tape_meas_lam_C |
TIGR01541 |
phage tail tape measure protein, lambda family; This model represents a relatively ... |
634-758 |
8.04e-03 |
|
phage tail tape measure protein, lambda family; This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. [Mobile and extrachromosomal element functions, Prophage functions]
Pssm-ID: 273681 [Multi-domain] Cd Length: 332 Bit Score: 40.98 E-value: 8.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 634 QAQNECRKLQD----EKETLLQRLTEV---EQERDQLEIVAMDAENMRKELAELESALQEQHEVNaslQQTQGDLSAYEA 706
Cdd:TIGR01541 7 TQQIADRKLKKlntaDEKSLQSRSDEIialIKLEKLLEEAEQKALEALKKLAEATASIRAQNKRQ---LDRFGLGDKQRE 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 707 ELEARLNLRDTEASQLKEelekVTRLTQLEQSALQAELEKERQALKNALGKA 758
Cdd:TIGR01541 84 RLDARLQIDRTFRKQQRD----LNKAMTAKGLAGSDLYKEQLAAIKASLNEA 131
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
275-749 |
8.44e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 275 LERDLEKKMietEELKSKQTRFLEEIKNQDKLNKSLKEEAMLQKQSCEELKSDLNTKNELLKQKTIELTRACQKQYELEQ 354
Cdd:COG4717 47 LLERLEKEA---DELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 355 ELAFYKIDAKFEPLNyypSEYAEIDKAPDEspyiGKSRYKRNMFATESYIIDNAQAIQIKKMEPDEQLRNDHVNLRGHAP 434
Cdd:COG4717 124 LLQLLPLYQELEALE---AELAELPERLEE----LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQD 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 435 LDRQLEDKEKKISAAQTRLSELHDEIEKAEQQI------LRATEEFKQLEEAVQLKKI-----SEAGKDLLYKQLSGRLQ 503
Cdd:COG4717 197 LAEELEELQQRLAELEEELEEAQEELEELEEELeqleneLEAAALEERLKEARLLLLIaaallALLGLGGSLLSLILTIA 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 504 LVNKLRQEALDLELQMEKQKQEIAEKQKEIKDLQIAIDSLDSKDpKHSHMKAQKRGKEQQLDIMNKQYKQLEsRLDEILS 583
Cdd:COG4717 277 GVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEE-LEELLAALGLPPDLSPEELLELLDRIE-ELQELLR 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 584 RIAKETEEIKdLEQQLTEGQIAANEALKKDLEGVISGLQeylgtikgQATQAQNECRKLQDEKETLLQRLTEVEQERDQL 663
Cdd:COG4717 355 EAEELEEELQ-LEELEQEIAALLAEAGVEDEEELRAALE--------QAEEYQELKEELEELEEQLEELLGELEELLEAL 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 664 --EIVAMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAyEAELEARLNLRDTEASQLKEELEKVTRLTQLEQ--SA 739
Cdd:COG4717 426 deEELEEELEELEEELEELEEELEELREELAELEAELEQLEE-DGELAELLQELEELKAELRELAEEWAALKLALEllEE 504
|
490
....*....|
gi 1622871293 740 LQAELEKERQ 749
Cdd:COG4717 505 AREEYREERL 514
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1900-2205 |
8.45e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 8.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1900 EQTRLQKDISEWANRFEDCQKEEETKQQQLQVLQSEIEENKLKLVQQemifQRLQKERESEESKLETSKVTLKEQQHQLE 1979
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTVRYNGQTMTENEFLNQLLHIVQH----QKAVSERQQQEKFEKMEQERLRQEKEEKA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1980 KELTDQKSKLDQVLSKVLAAEERVRILQEEERWGESLEKTLSQTKRELSEREQQLV---------EKSGELLALQKEA-- 2048
Cdd:pfam17380 310 REVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELERIrqeeiameiSRMRELERLQMERqq 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2049 --DSMRADFSLLRNQFLTERKKAEKQVASLKEALKIQRSQLEKNLLEQKQENSCMQKEMATIELVAQDNHERARRLMKEL 2126
Cdd:pfam17380 390 knERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQE 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2127 NQMQYEYTELKKQMANQKDL-ERRQMEISDAMRTLKSEVKDEIRTSlKNLNQflpELPADLEAILERNENLEGELESLKE 2205
Cdd:pfam17380 470 EERKRKKLELEKEKRDRKRAeEQRRKILEKELEERKQAMIEEERKR-KLLEK---EMEERQKAIYEEERRREAEEERRKQ 545
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
633-768 |
8.54e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 8.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 633 TQAQNECRKLQDEKETLLQRLTEVEQERDQLEIVAmDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELEARL 712
Cdd:PRK12705 40 QEAQKEAEEKLEAALLEAKELLLRERNQQRQEARR-EREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARE 118
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622871293 713 NLRDTEASQLKEELEKVTRLTQLEQ-----SALQAELEKERQALKNA-LGKAQFSEEKEQEN 768
Cdd:PRK12705 119 LELEELEKQLDNELYRVAGLTPEQArklllKLLDAELEEEKAQRVKKiEEEADLEAERKAQN 180
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1850-2205 |
8.67e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 8.67e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1850 NDISAIQQQLQEKQEAVNSLQEELANVQDHLNLAKQDLLHTTKHQDVLLSEQTRLQKDISEWANRFEdCQKEEETKQQQL 1929
Cdd:PRK04863 272 ADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN-LVQTALRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 1930 QVLQSEIEENKLKLVQQEMIFQRLQKERESEESKLETSKvtlkEQQHQLEKELTDQKSKLDQVLSKVLAAEERVRILQEE 2009
Cdd:PRK04863 351 ERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAE----EEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2010 ERWGESLEKTLSQTKRELSEREQQLVEKSGELLALQKEADSMRAdfslLRNQFlterKKAEKQVASLkeALKIQRSQlek 2089
Cdd:PRK04863 427 KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQA----AHSQF----EQAYQLVRKI--AGEVSRSE--- 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 2090 nlleqkqenscmQKEMAtIELVAQdnHERARRLMKELNQMQYEYTELKKQMANQKDLERRqmeISDAMRTLKSEVKDEir 2169
Cdd:PRK04863 494 ------------AWDVA-RELLRR--LREQRHLAEQLQQLRMRLSELEQRLRQQQRAERL---LAEFCKRLGKNLDDE-- 553
|
330 340 350
....*....|....*....|....*....|....*.
gi 1622871293 2170 tslknlnQFLPELPADLEAILernENLEGELESLKE 2205
Cdd:PRK04863 554 -------DELEQLQEELEARL---ESLSESVSEARE 579
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
569-961 |
9.12e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 9.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 569 KQYKQLESRLDEILSRIAKETEEIKDLEQ--QLTEGQIAANEAL--KKDLEGVISGLQEYLGTIKGQATQAQNECRKLQD 644
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQRlhQAFSRFIGSHLAVafEADPEAELRQLNRRRVELERALADHESQEQQQRS 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 645 EKETLLQRLTEVEQERDQLEIvaMDAENMRKELAELESALQEQHEVNASLQQTQGDLSAYEAELeARLNLRDTEASQLKE 724
Cdd:PRK04863 866 QLEQAKEGLSALNRLLPRLNL--LADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIV-SVLQSDPEQFEQLKQ 942
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 725 ELEKVTrlTQLEQSALQAELEKERQALKNALG--KAQFSEEKEQENSE-LHAKLKHLQDDNNLLKQQLKDFQNHL---NH 798
Cdd:PRK04863 943 DYQQAQ--QTQRDAKQQAFALTEVVQRRAHFSyeDAAEMLAKNSDLNEkLRQRLEQAEQERTRAREQLRQAQAQLaqyNQ 1020
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 799 VVDGLVRPEEVAAR-VDELRRKLKlgagEMNIHSPSDVLGKSLADlQKQFSEILAHSQWERNEAQVRERKLQEEMALQQE 877
Cdd:PRK04863 1021 VLASLKSSYDAKRQmLQELKQELQ----DLGVPADSGAEERARAR-RDELHARLSANRSRRNQLEKQLTFCEAEMDNLTK 1095
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 878 KLATGQEEFRQACERALEARINFDKRQHEARIQQLENEIH-----YLQ-ENLKSMEEIqGLTDLQLQEADEEKERilAQL 951
Cdd:PRK04863 1096 KLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHrrelaYLSaDELRSMSDK-ALGALRLAVADNEHLR--DVL 1172
|
410
....*....|
gi 1622871293 952 RELEKKKKLE 961
Cdd:PRK04863 1173 RLSEDPKRPE 1182
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
578-686 |
9.34e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 9.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 578 LDEILSRIAKET----EEIKDLEQQLTEGQIAAnEALKKDLEgviSGLQEYLGTIKGQATQAQNECRKLQDEKETLLQRL 653
Cdd:COG0542 395 IDEAAARVRMEIdskpEELDELERRLEQLEIEK-EALKKEQD---EASFERLAELRDELAELEEELEALKARWEAEKELI 470
|
90 100 110
....*....|....*....|....*....|...
gi 1622871293 654 TEVEQERDQLEIVAMDAENMRKELAELESALQE 686
Cdd:COG0542 471 EEIQELKEELEQRYGKIPELEKELAELEEELAE 503
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
677-928 |
9.42e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 677 LAELESALQEQHEVNASLQQTQGDLSAYEAELEARLNLRDTEASQLKeELEKVTRLTQLEQSALQAELEKERQALKnalg 756
Cdd:COG4942 12 ALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-ALERRIAALARRIRALEQELAALEAELA---- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 757 kaqfseEKEQENSELHAKLKHLQDDnnlLKQQLKD-FQNHLNHVVDGLVRPEEVAARVDELRRklklgageMNIHSPSDv 835
Cdd:COG4942 87 ------ELEKEIAELRAELEAQKEE---LAELLRAlYRLGRQPPLALLLSPEDFLDAVRRLQY--------LKYLAPAR- 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 836 lgKSLADLQKQFSEILAHSQWERNEAQVRERKLQEEMALQQEKLATGQEEfrqacERALEARINFDKRQHEARIQQLENE 915
Cdd:COG4942 149 --REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAE-----RQKLLARLEKELAELAAELAELQQE 221
|
250
....*....|...
gi 1622871293 916 IHYLQENLKSMEE 928
Cdd:COG4942 222 AEELEALIARLEA 234
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
634-949 |
1.00e-02 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 1.00e-02
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 634 QAQNECRKLqDEKETLLQRltEVEQERDQLEIVAMDAENMRKELAEL---ESALQEQHE--------VNASLQQT----- 697
Cdd:PRK04863 276 RHANERRVH-LEEALELRR--ELYTSRRQLAAEQYRLVEMARELAELneaESDLEQDYQaasdhlnlVQTALRQQekier 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 698 -QGDLSAYEAELEARLNLRdTEASQLKEELEKVTRLTQLEQSALQAELEKERQAL-------------KNALGKAQ---- 759
Cdd:PRK04863 353 yQADLEELEERLEEQNEVV-EEADEQQEENEARAEAAEEEVDELKSQLADYQQALdvqqtraiqyqqaVQALERAKqlcg 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 760 ---FSEEKEQE-NSELHAKLKHLQDDNNLLKQQLKDFQNHLNH----------VVDGLVRPEE----------------V 809
Cdd:PRK04863 432 lpdLTADNAEDwLEEFQAKEQEATEELLSLEQKLSVAQAAHSQfeqayqlvrkIAGEVSRSEAwdvarellrrlreqrhL 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622871293 810 AARVDELRRKLKLGAGEMNIHSPSD--------VLGKSLAD-------LQKQFSEILAHSQWERNEAQVRE--RKLQEEM 872
Cdd:PRK04863 512 AEQLQQLRMRLSELEQRLRQQQRAErllaefckRLGKNLDDedeleqlQEELEARLESLSESVSEARERRMalRQQLEQL 591
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622871293 873 ALQQEKLATGQEEFRQACERAleARINFDKRQHEARIQQLENEIHYLQENLKSMEEIQGLTDLQLQEADEEKERILA 949
Cdd:PRK04863 592 QARIQRLAARAPAWLAAQDAL--ARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| |
