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Conserved domains on  [gi|966988840|ref|XP_014971398|]
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signal recognition particle receptor subunit alpha isoform X1 [Macaca mulatta]

Protein Classification

signal recognition particle receptor subunit alpha( domain architecture ID 13695019)

signal recognition particle receptor subunit alpha, a component of the SRP (signal recognition particle) receptor, ensures, in conjunction with the signal recognition particle, the correct targeting of the nascent secretory proteins to the endoplasmic reticulum membrane system

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SRalpha_C cd17876
C-terminal domain of signal recognition particle receptor alpha subunit; The ...
391-607 2.04e-143

C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.


:

Pssm-ID: 349785  Cd Length: 204  Bit Score: 413.93  E-value: 2.04e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 391 YVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLsalhppekhggrtMVQLFEKGYGKDA 470
Cdd:cd17876    1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRL-------------GVELYEKGYGKDP 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 471 AGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQT 550
Cdd:cd17876   68 AAVAKEAIKYARDQGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSPSDN 147
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 966988840 551 PRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:cd17876  148 PRLIDGIVLTKFDTIDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
SRP-alpha_N pfam04086
Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct ...
28-268 2.55e-60

Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct polypeptides and a 7S RNA that is essential for transferring nascent polypeptide chains that are destined for export from the cell to the translocation apparatus of the endoplasmic reticulum (ER) membrane. SRP binds hydrophobic signal sequences as they emerge from the ribosome, and arrests translation.


:

Pssm-ID: 461165  Cd Length: 281  Bit Score: 202.26  E-value: 2.55e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   28 PVNALIRSVLLQ----------------------------VGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLL 79
Cdd:pfam04086   1 PINALIRDVLLEersgnpsfkhdsytlkwtldnelglvfvAVYQKILHLSYVDKLLDNVKTIFVDLYKDQLKPYTTLVEC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   80 NgtfDFQNDFLRLLREAEESSKI--RAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGPLATSK 157
Cdd:pfam04086  81 P---DFDEYFDQLLREAEESAAAqaKAPKAMKTFEESKKSQKTVKSMIEDRPPPPPGKKKKGAKKEAPAAGDAGSDDSTP 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  158 AVPAEKSG--LPVGPENGVELSKEELIRRKREEFIQKHGRG----MEKSNKSTKSDAPKEKGKKaPRVWELGGCA-NKEV 230
Cdd:pfam04086 158 SATPDTSRpsTPLLTAKGAGPGAGDVSRRNRKALNKKRSGAgassGDESSKSPKPPKKKKKGKK-ARVWDADGSAdEADQ 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 966988840  231 LDYSTPTTNGSPEAALSEDINLIRGTGPG-------GQLQDLDCS 268
Cdd:pfam04086 237 LDYSAPADENGGEAEGESAVEAVDQSTWGsktgkgqFVLKDLDDE 281
FlhF super family cl37279
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
273-495 2.99e-14

flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]


The actual alignment was detected with superfamily member TIGR03499:

Pssm-ID: 274609 [Multi-domain]  Cd Length: 282  Bit Score: 73.52  E-value: 2.99e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  273 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDmeSVLDKMRDHLIAKNVAADIAVQLCESVANKLEGkvmgtfst 352
Cdd:TIGR03499  97 AQAAEPLLPEEELRKELEALRELLERLLAGLAWLQRP--PERAKLYERLLEAGVSEELARELLEKLPEDADA-------- 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  353 vtSTVKQALQESLVQILQpqrrvdmlRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLEN--GFSVLIAACDTFR 430
Cdd:TIGR03499 167 --EDAWRWLREALEGMLP--------VKPEEDPILEQGGVIALVGPTGVGKTTTLAKLAARFALEhgKKKVALITTDTYR 236
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966988840  431 AGAVEQLRTHtrrlsalhppekhgGRTMvqlfekgygkdaaGIAMEAI--------AFARNQGFDVVLVDTAG 495
Cdd:TIGR03499 237 IGAVEQLKTY--------------AEIL-------------GIPVKVArdpkelreALDRLRDKDLILIDTAG 282
 
Name Accession Description Interval E-value
SRalpha_C cd17876
C-terminal domain of signal recognition particle receptor alpha subunit; The ...
391-607 2.04e-143

C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.


Pssm-ID: 349785  Cd Length: 204  Bit Score: 413.93  E-value: 2.04e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 391 YVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLsalhppekhggrtMVQLFEKGYGKDA 470
Cdd:cd17876    1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRL-------------GVELYEKGYGKDP 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 471 AGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQT 550
Cdd:cd17876   68 AAVAKEAIKYARDQGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSPSDN 147
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 966988840 551 PRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:cd17876  148 PRLIDGIVLTKFDTIDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
PRK14974 PRK14974
signal recognition particle-docking protein FtsY;
269-608 1.02e-86

signal recognition particle-docking protein FtsY;


Pssm-ID: 237875 [Multi-domain]  Cd Length: 336  Bit Score: 273.39  E-value: 1.02e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 269 SSDDEGAAQNSTKPSATKGTLGGMFGMLKglvgSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMG 348
Cdd:PRK14974  26 EEAPEAEEEEEEEDEEEKKEKPGFFDKAK----ITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVK 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 349 TFSTVTSTVKQALQESLVQILQPQRRVDMLRDImdaQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDT 428
Cdd:PRK14974 102 RGEDVEEIVKNALKEALLEVLSVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 429 FRAGAVEQLRTHTRRLSalhppekhggrtmVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 508
Cdd:PRK14974 179 FRAGAIEQLEEHAERLG-------------VKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELK 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 509 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGT 588
Cdd:PRK14974 246 KIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVG----------IDGVILTKVDA-DAKGGAALSIAYVIGKPILFLGV 314
                        330       340
                 ....*....|....*....|
gi 966988840 589 GQTYCDLRSLNAKAVVAALM 608
Cdd:PRK14974 315 GQGYDDLIPFDPDWFVDKLL 334
SRP54 smart00962
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ...
390-609 2.89e-73

SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.


Pssm-ID: 214940  Cd Length: 197  Bit Score: 233.07  E-value: 2.89e-73
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   390 PYVVTFCGVNGVGKSTNLAKISFWLLENG-FSVLIAACDTFRAGAVEQLRTHTRRLSalhppekhggrtmVQLFEKGYGK 468
Cdd:smart00962   1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILG-------------VVPVAGGEGA 67
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   469 DAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsma 548
Cdd:smart00962  68 DPVAVAKDAVELAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALG----- 142
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966988840   549 qtprlIDGIVLTKFDtIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 609
Cdd:smart00962 143 -----LTGIILTKLD-GTAKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
FtsY COG0552
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ...
285-607 1.70e-68

Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440318 [Multi-domain]  Cd Length: 303  Bit Score: 224.52  E-value: 1.70e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 285 TKGTLGGmfGMLKGLVGSKSLSredmESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTfstvTSTVKQALQES 364
Cdd:COG0552   12 TRSGLGE--KLKSLFSGKKKID----EDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKD----PEELKEALKEE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 365 LVQILQP-QRRVDMLRDimdaqrrqRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRThtrr 443
Cdd:COG0552   82 LLEILDPvDKPLAIEEK--------KPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEV---- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 444 lsalhppekHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPD 517
Cdd:COG0552  150 ---------WGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVikkldpDAPH 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 518 LVLFVGEALVGNEAVDQLVKFNRALAdhsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRS 597
Cdd:COG0552  221 EVLLVLDATTGQNALSQAKVFNEAVG----------VTGIVLTKLDG-TAKGGVVLAIADELGIPIKFIGVGEGIDDLRP 289
                        330
                 ....*....|
gi 966988840 598 LNAKAVVAAL 607
Cdd:COG0552  290 FDAEEFVDAL 299
ftsY TIGR00064
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ...
308-607 2.17e-62

signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 272883 [Multi-domain]  Cd Length: 277  Bit Score: 207.49  E-value: 2.17e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  308 EDMESVLDKMRDHLIAknvaADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDmlRDIMDAQRR 387
Cdd:TIGR00064   1 KDDEDFFEELEEILLE----SDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKN--TDLELIVEE 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  388 QRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLrthtrrlsalhppEKHGGRTMVQLFEKGYG 467
Cdd:TIGR00064  75 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQL-------------EEWAKRLGVDVIKQKEG 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  468 KDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFNRA 541
Cdd:TIGR00064 142 ADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVikkvdkDAPDEVLLVLDATTGQNALEQAKVFNEA 221
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966988840  542 LAdhsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:TIGR00064 222 VG----------LTGIILTKLDG-TAKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEAL 276
SRP54 pfam00448
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ...
392-607 1.39e-60

SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.


Pssm-ID: 459814 [Multi-domain]  Cd Length: 193  Bit Score: 199.69  E-value: 1.39e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  392 VVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHtrrlsalhppekhGGRTMVQLFEKGYGKDAA 471
Cdd:pfam00448   2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQL-------------AEKLGVPVFGSKTGADPA 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  472 GIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsmaqtp 551
Cdd:pfam00448  69 AVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVG-------- 140
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 966988840  552 rlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:pfam00448 141 --ITGVILTKLDG-DAKGGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
SRP-alpha_N pfam04086
Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct ...
28-268 2.55e-60

Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct polypeptides and a 7S RNA that is essential for transferring nascent polypeptide chains that are destined for export from the cell to the translocation apparatus of the endoplasmic reticulum (ER) membrane. SRP binds hydrophobic signal sequences as they emerge from the ribosome, and arrests translation.


Pssm-ID: 461165  Cd Length: 281  Bit Score: 202.26  E-value: 2.55e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   28 PVNALIRSVLLQ----------------------------VGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLL 79
Cdd:pfam04086   1 PINALIRDVLLEersgnpsfkhdsytlkwtldnelglvfvAVYQKILHLSYVDKLLDNVKTIFVDLYKDQLKPYTTLVEC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   80 NgtfDFQNDFLRLLREAEESSKI--RAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGPLATSK 157
Cdd:pfam04086  81 P---DFDEYFDQLLREAEESAAAqaKAPKAMKTFEESKKSQKTVKSMIEDRPPPPPGKKKKGAKKEAPAAGDAGSDDSTP 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  158 AVPAEKSG--LPVGPENGVELSKEELIRRKREEFIQKHGRG----MEKSNKSTKSDAPKEKGKKaPRVWELGGCA-NKEV 230
Cdd:pfam04086 158 SATPDTSRpsTPLLTAKGAGPGAGDVSRRNRKALNKKRSGAgassGDESSKSPKPPKKKKKGKK-ARVWDADGSAdEADQ 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 966988840  231 LDYSTPTTNGSPEAALSEDINLIRGTGPG-------GQLQDLDCS 268
Cdd:pfam04086 237 LDYSAPADENGGEAEGESAVEAVDQSTWGsktgkgqFVLKDLDDE 281
SR_alpha_SRX cd14826
SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle ...
3-92 2.31e-30

SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle receptor subunit alpha (SR-alpha) is part of the membrane-associated heterodimeric receptor for the signal recognition particle (SRP). The signal recognition particle (SRP) pathway is highly conserved and plays an important role in the translocation of proteins across and insertion into membranes by targeting the translating ribosome to the endoplasmic reticulum. The N-terminal SRX domain of SR-alpha has a profilin-like fold and has been shown to be the interaction site with the second subunit, SR-beta.


Pssm-ID: 341430  Cd Length: 118  Bit Score: 114.99  E-value: 2.31e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   3 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQ----------------------------VGFQKILTLTYVDKL 54
Cdd:cd14826    1 DQFSIFTKGGIVLWSFNFTGLFKGSPINALIKDVLLEersgessftydsytlkwtldnelglvfvVVYQKILQLQYIDEL 80
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 966988840  55 IDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 92
Cdd:cd14826   81 LDLVKKLFVSLYKNELKNKNALGIDDDLFKFDEYFKQK 118
FlhF TIGR03499
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
273-495 2.99e-14

flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274609 [Multi-domain]  Cd Length: 282  Bit Score: 73.52  E-value: 2.99e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  273 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDmeSVLDKMRDHLIAKNVAADIAVQLCESVANKLEGkvmgtfst 352
Cdd:TIGR03499  97 AQAAEPLLPEEELRKELEALRELLERLLAGLAWLQRP--PERAKLYERLLEAGVSEELARELLEKLPEDADA-------- 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  353 vtSTVKQALQESLVQILQpqrrvdmlRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLEN--GFSVLIAACDTFR 430
Cdd:TIGR03499 167 --EDAWRWLREALEGMLP--------VKPEEDPILEQGGVIALVGPTGVGKTTTLAKLAARFALEhgKKKVALITTDTYR 236
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966988840  431 AGAVEQLRTHtrrlsalhppekhgGRTMvqlfekgygkdaaGIAMEAI--------AFARNQGFDVVLVDTAG 495
Cdd:TIGR03499 237 IGAVEQLKTY--------------AEIL-------------GIPVKVArdpkelreALDRLRDKDLILIDTAG 282
SRP54_N pfam02881
SRP54-type protein, helical bundle domain;
290-361 1.37e-08

SRP54-type protein, helical bundle domain;


Pssm-ID: 460734 [Multi-domain]  Cd Length: 75  Bit Score: 51.70  E-value: 1.37e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966988840  290 GGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG-KVMGTFSTVTSTVKQAL 361
Cdd:pfam02881   3 EKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGeKKLKPPQEVKKILKEEL 75
 
Name Accession Description Interval E-value
SRalpha_C cd17876
C-terminal domain of signal recognition particle receptor alpha subunit; The ...
391-607 2.04e-143

C-terminal domain of signal recognition particle receptor alpha subunit; The signal-recognition particle (SRP) receptor (SR) alpha-subunit (SRalpha) of the eukaryotic SR interacts with the signal-recognition particle (SRP) and is essential for the co-translational membrane targeting of proteins.


Pssm-ID: 349785  Cd Length: 204  Bit Score: 413.93  E-value: 2.04e-143
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 391 YVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLsalhppekhggrtMVQLFEKGYGKDA 470
Cdd:cd17876    1 YVIVFCGVNGVGKSTNLAKIAYWLLSNGFRVLIAACDTFRSGAVEQLRTHARRL-------------GVELYEKGYGKDP 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 471 AGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQT 550
Cdd:cd17876   68 AAVAKEAIKYARDQGFDVVLIDTAGRMQNNEPLMRALAKLIKENNPDLVLFVGEALVGNDAVDQLKKFNQALADYSPSDN 147
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 966988840 551 PRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:cd17876  148 PRLIDGIVLTKFDTIDDKVGAALSMVYATGQPIVFVGTGQTYTDLKKLNVKAVVNSL 204
SRP_G_like cd03115
GTPase domain similar to the signal recognition particle subunit 54; The signal recognition ...
391-607 1.59e-88

GTPase domain similar to the signal recognition particle subunit 54; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognate receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.


Pssm-ID: 349769 [Multi-domain]  Cd Length: 193  Bit Score: 272.71  E-value: 1.59e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 391 YVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLsalhppekhggrtMVQLFEKGYGKDA 470
Cdd:cd03115    1 NVILLVGLQGSGKTTTLAKLARYYQEKGKKVLLIAADTFRAAAVEQLKTLAEKL-------------GVPVFESYTGTDP 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 471 AGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsmaqt 550
Cdd:cd03115   68 ASIAQEAVEKAKLEGYDVLLVDTAGRLQKDEPLMEELKKVKEVESPDEVLLVLDATTGQEALSQAKAFNEAVG------- 140
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 966988840 551 prlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:cd03115  141 ---LTGVILTKLDG-TAKGGAALSIVAETKKPIKFIGVGEKPEDLEPFDPERFVSAL 193
PRK14974 PRK14974
signal recognition particle-docking protein FtsY;
269-608 1.02e-86

signal recognition particle-docking protein FtsY;


Pssm-ID: 237875 [Multi-domain]  Cd Length: 336  Bit Score: 273.39  E-value: 1.02e-86
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 269 SSDDEGAAQNSTKPSATKGTLGGMFGMLKglvgSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMG 348
Cdd:PRK14974  26 EEAPEAEEEEEEEDEEEKKEKPGFFDKAK----ITEIKEKDIEDLLEELELELLESDVALEVAEEILESLKEKLVGKKVK 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 349 TFSTVTSTVKQALQESLVQILQPQRRVDMLRDImdaQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDT 428
Cdd:PRK14974 102 RGEDVEEIVKNALKEALLEVLSVGDLFDLIEEI---KSKGKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 429 FRAGAVEQLRTHTRRLSalhppekhggrtmVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALA 508
Cdd:PRK14974 179 FRAGAIEQLEEHAERLG-------------VKVIKHKYGADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELK 245
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 509 KLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGT 588
Cdd:PRK14974 246 KIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVG----------IDGVILTKVDA-DAKGGAALSIAYVIGKPILFLGV 314
                        330       340
                 ....*....|....*....|
gi 966988840 589 GQTYCDLRSLNAKAVVAALM 608
Cdd:PRK14974 315 GQGYDDLIPFDPDWFVDKLL 334
SRP54 smart00962
SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 ...
390-609 2.89e-73

SRP54-type protein, GTPase domain; This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins.


Pssm-ID: 214940  Cd Length: 197  Bit Score: 233.07  E-value: 2.89e-73
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   390 PYVVTFCGVNGVGKSTNLAKISFWLLENG-FSVLIAACDTFRAGAVEQLRTHTRRLSalhppekhggrtmVQLFEKGYGK 468
Cdd:smart00962   1 PGVILLVGPNGVGKTTTIAKLAARLKLKGgKKVLLVAADTFRAAAVEQLKTYAEILG-------------VVPVAGGEGA 67
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   469 DAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsma 548
Cdd:smart00962  68 DPVAVAKDAVELAKARGYDVVLIDTAGRLHNDENLMEELKKIKRVIKPDEVLLVSDATTGQDAVEQAKAFNEALG----- 142
                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966988840   549 qtprlIDGIVLTKFDtIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMK 609
Cdd:smart00962 143 -----LTGIILTKLD-GTAKGGAALSIAAETGLPIKFIGTGEKVPDLEPFDPERFVSRLLG 197
FtsY COG0552
Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular ...
285-607 1.70e-68

Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440318 [Multi-domain]  Cd Length: 303  Bit Score: 224.52  E-value: 1.70e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 285 TKGTLGGmfGMLKGLVGSKSLSredmESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTfstvTSTVKQALQES 364
Cdd:COG0552   12 TRSGLGE--KLKSLFSGKKKID----EDLLEELEELLIEADVGVETTEEIIEELRERVKRKKLKD----PEELKEALKEE 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 365 LVQILQP-QRRVDMLRDimdaqrrqRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRThtrr 443
Cdd:COG0552   82 LLEILDPvDKPLAIEEK--------KPFVILVVGVNGVGKTTTIGKLAHRLKAEGKSVLLAAGDTFRAAAIEQLEV---- 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 444 lsalhppekHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPD 517
Cdd:COG0552  150 ---------WGERVGVPVIAQKEGADPAAVAFDAIQAAKARGADVVIIDTAGRLHNKKNLMEELKKIKRVikkldpDAPH 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 518 LVLFVGEALVGNEAVDQLVKFNRALAdhsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRS 597
Cdd:COG0552  221 EVLLVLDATTGQNALSQAKVFNEAVG----------VTGIVLTKLDG-TAKGGVVLAIADELGIPIKFIGVGEGIDDLRP 289
                        330
                 ....*....|
gi 966988840 598 LNAKAVVAAL 607
Cdd:COG0552  290 FDAEEFVDAL 299
ftsY TIGR00064
signal recognition particle-docking protein FtsY; There is a weak division between FtsY and ...
308-607 2.17e-62

signal recognition particle-docking protein FtsY; There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 272883 [Multi-domain]  Cd Length: 277  Bit Score: 207.49  E-value: 2.17e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  308 EDMESVLDKMRDHLIAknvaADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDmlRDIMDAQRR 387
Cdd:TIGR00064   1 KDDEDFFEELEEILLE----SDVGYEVVEKIIEALKKELKGKKVKDAEKLKEILKEYLKEILKEDLLKN--TDLELIVEE 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  388 QRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLrthtrrlsalhppEKHGGRTMVQLFEKGYG 467
Cdd:TIGR00064  75 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQL-------------EEWAKRLGVDVIKQKEG 141
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  468 KDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFNRA 541
Cdd:TIGR00064 142 ADPAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVikkvdkDAPDEVLLVLDATTGQNALEQAKVFNEA 221
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 966988840  542 LAdhsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:TIGR00064 222 VG----------LTGIILTKLDG-TAKGGIILSIAYELKLPIKFIGVGEKIDDLAPFDADWFVEAL 276
SRP54 pfam00448
SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 ...
392-607 1.39e-60

SRP54-type protein, GTPase domain; This family includes relatives of the G-domain of the SRP54 family of proteins.


Pssm-ID: 459814 [Multi-domain]  Cd Length: 193  Bit Score: 199.69  E-value: 1.39e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  392 VVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHtrrlsalhppekhGGRTMVQLFEKGYGKDAA 471
Cdd:pfam00448   2 VILLVGLQGSGKTTTIAKLAAYLKKKGKKVLLVAADTFRAAAIEQLKQL-------------AEKLGVPVFGSKTGADPA 68
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  472 GIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsmaqtp 551
Cdd:pfam00448  69 AVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVVAPDEVLLVLDATTGQNAVNQAKAFNEAVG-------- 140
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 966988840  552 rlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:pfam00448 141 --ITGVILTKLDG-DAKGGAALSIVAETGKPIKFIGVGEKIDDLEPFDPERFVSRL 193
SRP-alpha_N pfam04086
Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct ...
28-268 2.55e-60

Signal recognition particle, alpha subunit, N-terminal; SRP is a complex of six distinct polypeptides and a 7S RNA that is essential for transferring nascent polypeptide chains that are destined for export from the cell to the translocation apparatus of the endoplasmic reticulum (ER) membrane. SRP binds hydrophobic signal sequences as they emerge from the ribosome, and arrests translation.


Pssm-ID: 461165  Cd Length: 281  Bit Score: 202.26  E-value: 2.55e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   28 PVNALIRSVLLQ----------------------------VGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLL 79
Cdd:pfam04086   1 PINALIRDVLLEersgnpsfkhdsytlkwtldnelglvfvAVYQKILHLSYVDKLLDNVKTIFVDLYKDQLKPYTTLVEC 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   80 NgtfDFQNDFLRLLREAEESSKI--RAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGPLATSK 157
Cdd:pfam04086  81 P---DFDEYFDQLLREAEESAAAqaKAPKAMKTFEESKKSQKTVKSMIEDRPPPPPGKKKKGAKKEAPAAGDAGSDDSTP 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  158 AVPAEKSG--LPVGPENGVELSKEELIRRKREEFIQKHGRG----MEKSNKSTKSDAPKEKGKKaPRVWELGGCA-NKEV 230
Cdd:pfam04086 158 SATPDTSRpsTPLLTAKGAGPGAGDVSRRNRKALNKKRSGAgassGDESSKSPKPPKKKKKGKK-ARVWDADGSAdEADQ 236
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 966988840  231 LDYSTPTTNGSPEAALSEDINLIRGTGPG-------GQLQDLDCS 268
Cdd:pfam04086 237 LDYSAPADENGGEAEGESAVEAVDQSTWGsktgkgqFVLKDLDDE 281
FtsY cd17874
signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle ...
391-607 8.62e-59

signal recognition particle receptor FtsY; FtsY, the bacterial signal-recognition particle (SRP) receptor (SR), is homologous to the SRP receptor alpha-subunit (SRalpha) of the eukaryotic SR. It interacts with the signal-recognition particle (SRP) and is required for the co-translational membrane targeting of proteins.


Pssm-ID: 349783  Cd Length: 199  Bit Score: 195.10  E-value: 8.62e-59
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 391 YVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSalhppekhggrtmVQLFEKGYGKDA 470
Cdd:cd17874    1 FVILFVGVNGVGKTTTIGKLAHYLKNQGKKVVLAAGDTFRAAAVEQLEEWAERLG-------------VPVISQNEGADP 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 471 AGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLFVGEALVGNEAVDQLVKFNRALAd 544
Cdd:cd17874   68 AAVAFDAIQAAKARGIDVVLIDTAGRLHTKKNLMEELKKIKRVikkkdpEAPHEVLLVLDATTGQNALEQAKEFNEAVG- 146
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966988840 545 hsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:cd17874  147 ---------LTGIILTKLDG-TAKGGIVLSIADELKIPVKFVGVGEGIDDLRPFDPEAFVEAL 199
PRK10416 PRK10416
signal recognition particle-docking protein FtsY; Provisional
288-610 1.67e-52

signal recognition particle-docking protein FtsY; Provisional


Pssm-ID: 236686 [Multi-domain]  Cd Length: 318  Bit Score: 182.61  E-value: 1.67e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 288 TLGGMFGMLKGLVGSKSLSredmESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMgtfsTVTSTVKQALQESLVQ 367
Cdd:PRK10416  27 TRENFGEGINGLFAKKKID----EDLLEELEELLIEADVGVETTEEIIEELRERVKRKNL----KDPEELKELLKEELAE 98
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 368 ILQPQRRVDMLRDimdaqrrQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRThtrrlsal 447
Cdd:PRK10416  99 ILEPVEKPLNIEE-------KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQV-------- 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 448 hppekHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITV------NTPDLVLF 521
Cdd:PRK10416 164 -----WGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVikkadpDAPHEVLL 238
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 522 VGEALVGNEAVDQLVKFNRALAdhsmaqtprlIDGIVLTKFD-TidDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNA 600
Cdd:PRK10416 239 VLDATTGQNALSQAKAFHEAVG----------LTGIILTKLDgT--AKGGVVFAIADELGIPIKFIGVGEGIDDLQPFDA 306
                        330
                 ....*....|
gi 966988840 601 KAVVAALMKA 610
Cdd:PRK10416 307 EEFVDALLGG 316
Ffh COG0541
Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular ...
296-589 2.07e-46

Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440307 [Multi-domain]  Cd Length: 423  Bit Score: 169.05  E-value: 2.07e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 296 LKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG-KVMGTFstvtsTVKQAL----QESLVQILQ 370
Cdd:COG0541   13 FKKLRGKGRLTEENIKEALREVRRALLEADVNLKVVKDFIERVKERALGeEVLKSL-----TPGQQVikivHDELVELLG 87
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 371 PQRRVDMLRDimdaqrrQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSalhpp 450
Cdd:COG0541   88 GENEELNLAK-------KPPTVIMMVGLQGSGKTTTAAKLAKYLKKKGKKPLLVAADVYRPAAIEQLKTLGEQIG----- 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 451 ekhggrtmVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNE 530
Cdd:COG0541  156 --------VPVFPEEDGKDPVDIAKRALEYAKKNGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDETLLVVDAMTGQD 227
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 966988840 531 AVDQLVKFNRALAdhsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTG 589
Cdd:COG0541  228 AVNVAKAFNEALG----------LTGVILTKLDG-DARGGAALSIRAVTGKPIKFIGTG 275
SRP_G cd18539
GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) ...
392-596 2.82e-44

GTPase domain of signal recognition particle protein; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.


Pssm-ID: 349786  Cd Length: 193  Bit Score: 156.22  E-value: 2.82e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 392 VVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHtrrlsalhppekhGGRTMVQLFEKGYGKDAA 471
Cdd:cd18539    2 VILLVGLQGSGKTTTAAKLALYLKKKGKKVLLVAADVYRPAAIEQLQTL-------------GEQVGVPVFESGDGQSPV 68
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 472 GIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsmaqtp 551
Cdd:cd18539   69 DIAKRALEKAKEEGFDVVIVDTAGRLHIDEELMDELKEIKEVLNPDEVLLVVDAMTGQDAVNVAKAFNERLG-------- 140
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 966988840 552 rlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLR 596
Cdd:cd18539  141 --LTGVVLTKLDG-DARGGAALSIRHVTGKPIKFIGVGEKIEDLE 182
SRP54_G cd17875
GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) ...
391-607 1.19e-30

GTPase domain of the signal recognition 54 kDa subunit; The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.


Pssm-ID: 349784  Cd Length: 193  Bit Score: 118.45  E-value: 1.19e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 391 YVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSalhppekhggrtmVQLFEKGYGKDA 470
Cdd:cd17875    1 NVIMFVGLQGSGKTTTAAKLAYYYQKKGYKVGLVCADTFRAGAFDQLKQNATKAR-------------VPFYGSYTEKDP 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 471 AGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsmaqt 550
Cdd:cd17875   68 VKIAKEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMKQISDAVKPDEVILVIDASIGQAAEDQAKAFKEAVD------- 140
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 966988840 551 prlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:cd17875  141 ---IGSVIITKLDG-HAKGGGALSAVAATGAPIIFIGTGEHIDDLEPFDPKRFVSRL 193
SR_alpha_SRX cd14826
SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle ...
3-92 2.31e-30

SRX domain of signal recognition particle receptor subunit alpha; Signal recognition particle receptor subunit alpha (SR-alpha) is part of the membrane-associated heterodimeric receptor for the signal recognition particle (SRP). The signal recognition particle (SRP) pathway is highly conserved and plays an important role in the translocation of proteins across and insertion into membranes by targeting the translating ribosome to the endoplasmic reticulum. The N-terminal SRX domain of SR-alpha has a profilin-like fold and has been shown to be the interaction site with the second subunit, SR-beta.


Pssm-ID: 341430  Cd Length: 118  Bit Score: 114.99  E-value: 2.31e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   3 DFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQ----------------------------VGFQKILTLTYVDKL 54
Cdd:cd14826    1 DQFSIFTKGGIVLWSFNFTGLFKGSPINALIKDVLLEersgessftydsytlkwtldnelglvfvVVYQKILQLQYIDEL 80
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 966988840  55 IDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRL 92
Cdd:cd14826   81 LDLVKKLFVSLYKNELKNKNALGIDDDLFKFDEYFKQK 118
PRK00771 PRK00771
signal recognition particle protein Srp54; Provisional
389-608 3.37e-29

signal recognition particle protein Srp54; Provisional


Pssm-ID: 179118 [Multi-domain]  Cd Length: 437  Bit Score: 120.70  E-value: 3.37e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 389 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSalhppekhggrtmVQLFEKGYGK 468
Cdd:PRK00771  94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIG-------------VPFYGDPDNK 160
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 469 DAAGIAMEAIAFARNQgfDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALAdhsma 548
Cdd:PRK00771 161 DAVEIAKEGLEKFKKA--DVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFHEAVG----- 233
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 549 qtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 608
Cdd:PRK00771 234 -----IGGIIITKLDG-TAKGGGALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLL 287
FlhF COG1419
Flagellar biosynthesis GTPase FlhF [Cell motility];
289-590 3.41e-27

Flagellar biosynthesis GTPase FlhF [Cell motility];


Pssm-ID: 441029 [Multi-domain]  Cd Length: 361  Bit Score: 113.42  E-value: 3.41e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 289 LGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEgkvmgtfstvTSTVKQALQESLVQI 368
Cdd:COG1419   83 LAELKELLEEQLSGLAGESARLPPELAELLERLLEAGVSPELARELLEKLPEDLS----------AEEAWRALLEALARR 152
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 369 LQPQRRvdmlrDIMDAQRrqrpyVVTFCGVNGVGKSTNLAKISFWL-LENGFSVLIAACDTFRAGAVEQLRTHTRRLsal 447
Cdd:COG1419  153 LPVAED-----PLLDEGG-----VIALVGPTGVGKTTTIAKLAARFvLRGKKKVALITTDTYRIGAVEQLKTYARIL--- 219
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 448 hppekhggrtmvqlfekgygkdaaGIAMEAI--------AFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLV 519
Cdd:COG1419  220 ------------------------GVPVEVAydpeelkeALERLRDKDLVLIDTAGRSPRDPELIEELKALLDAGPPIEV 275
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966988840 520 LFV------GEALvgNEAVDQLVKFNraladhsmaqtprlIDGIVLTKFD-TidDKVGAAISMTYITSKPIVFVGTGQ 590
Cdd:COG1419  276 YLVlsattkYEDL--KEIVEAFSSLG--------------LDGLILTKLDeT--ASLGSILNLLIRTGLPLSYITNGQ 335
SRP54_euk TIGR01425
signal recognition particle protein SRP54; This model represents examples from the eukaryotic ...
289-608 5.13e-24

signal recognition particle protein SRP54; This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.


Pssm-ID: 273615 [Multi-domain]  Cd Length: 428  Bit Score: 104.92  E-value: 5.13e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  289 LGG-MFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQ 367
Cdd:TIGR01425   5 LGSsLVTALRSMSSATVIDEEVINTMLKEICTALLESDVNPKLVRQMRNNIKKKINLEDIASGINKRKLIQDAVFEELCN 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  368 ILQPQRRVDMLRdimdaqrRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSal 447
Cdd:TIGR01425  85 LVDPGVEAFTPK-------KGKTCVIMFVGLQGAGKTTTCTKLAYYYKRRGFKPALVCADTFRAGAFDQLKQNATKAG-- 155
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  448 hppekhggrtmVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALV 527
Cdd:TIGR01425 156 -----------IPFYGSYEESDPVKIASEGVEKFRKEKFDIIIVDTSGRHKQEKELFEEMQQVREAIKPDSIIFVMDGSI 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  528 GNEAVDQLVKFNRALAdhsmaqtprlIDGIVLTKFDTiDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAAL 607
Cdd:TIGR01425 225 GQAAFGQAKAFKDSVE----------VGSVIITKLDG-HAKGGGALSAVAATKSPIIFIGTGEHVDEFEIFDAEPFVSKL 293

                  .
gi 966988840  608 M 608
Cdd:TIGR01425 294 L 294
FlhF cd17873
signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP) ...
392-591 1.28e-20

signal-recognition particle GTPase FlhF; FlhF protein is a signal-recognition particle (SRP)-type GTPase that is essential for the placement and assembly of polar flagella. It is similar to the 54 kd subunit (SRP54) of the signal recognition particle (SRP) that mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal signal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR).


Pssm-ID: 349782 [Multi-domain]  Cd Length: 189  Bit Score: 89.92  E-value: 1.28e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 392 VVTFCGVNGVGKSTNLAKI-SFWLLENGFSVLIAACDTFRAGAVEQLRTHtrrlsalhppekhgGRTMVQLFEKGYGKDA 470
Cdd:cd17873    2 VIALVGPTGVGKTTTLAKLaARYVLKKGKKVALITTDTYRIGAVEQLKTY--------------AEIMGIPVEVAEDPED 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 471 AgiameAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPD---LVLFVG-EALVGNEAVDQLVKFNraladhs 546
Cdd:cd17873   68 L-----ADALERLSDRDLILIDTAGRSPRDKEQLEELKELLGAGEDIevhLVLSATtKAKDLKEIIERFSPLG------- 135
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 966988840 547 maqtprlIDGIVLTKFDTIdDKVGAAISMTYITSKPIVFVGTGQT 591
Cdd:cd17873  136 -------YRGLILTKLDET-TSLGSVLSVLAESQLPVSYVTTGQR 172
flhF PRK05703
flagellar biosynthesis protein FlhF;
334-590 2.82e-16

flagellar biosynthesis protein FlhF;


Pssm-ID: 235570 [Multi-domain]  Cd Length: 424  Bit Score: 81.48  E-value: 2.82e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 334 LCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQrrvdmLRDIMDAQRrqrpyVVTFCGVNGVGKSTNLAKI--S 411
Cdd:PRK05703 175 LSPEIAEKLLKLLLEHMPPRERTAWRYLLELLANMIPVR-----VEDILKQGG-----VVALVGPTGVGKTTTLAKLaaR 244
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 412 FWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSA----LHPPEKhggrtmvqlFEKgygkdaagiAMEaiAFARnqgFD 487
Cdd:PRK05703 245 YALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIpvevVYDPKE---------LAK---------ALE--QLRD---CD 301
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 488 VVLVDTAGRMQDNAPLMTALAKLI-TVNTPD---LVLfvgEALVGNEAVDQLVK-FNRaladhsmaqTPrlIDGIVLTKF 562
Cdd:PRK05703 302 VILIDTAGRSQRDKRLIEELKALIeFSGEPIdvyLVL---SATTKYEDLKDIYKhFSR---------LP--LDGLIFTKL 367
                        250       260
                 ....*....|....*....|....*....
gi 966988840 563 D-TidDKVGAAISMTYITSKPIVFVGTGQ 590
Cdd:PRK05703 368 DeT--SSLGSILSLLIESGLPISYLTNGQ 394
FlhF TIGR03499
flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]
273-495 2.99e-14

flagellar biosynthetic protein FlhF; [Cellular processes, Chemotaxis and motility]


Pssm-ID: 274609 [Multi-domain]  Cd Length: 282  Bit Score: 73.52  E-value: 2.99e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  273 EGAAQNSTKPSATKGTLGGMFGMLKGLVGSKSLSREDmeSVLDKMRDHLIAKNVAADIAVQLCESVANKLEGkvmgtfst 352
Cdd:TIGR03499  97 AQAAEPLLPEEELRKELEALRELLERLLAGLAWLQRP--PERAKLYERLLEAGVSEELARELLEKLPEDADA-------- 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  353 vtSTVKQALQESLVQILQpqrrvdmlRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLEN--GFSVLIAACDTFR 430
Cdd:TIGR03499 167 --EDAWRWLREALEGMLP--------VKPEEDPILEQGGVIALVGPTGVGKTTTLAKLAARFALEhgKKKVALITTDTYR 236
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966988840  431 AGAVEQLRTHtrrlsalhppekhgGRTMvqlfekgygkdaaGIAMEAI--------AFARNQGFDVVLVDTAG 495
Cdd:TIGR03499 237 IGAVEQLKTY--------------AEIL-------------GIPVKVArdpkelreALDRLRDKDLILIDTAG 282
AAA smart00382
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ...
389-528 4.95e-09

ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.


Pssm-ID: 214640 [Multi-domain]  Cd Length: 148  Bit Score: 55.46  E-value: 4.95e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   389 RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRthtrrlsalhppekhggrtMVQLFEKGYGK 468
Cdd:smart00382   1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-------------------LIIVGGKKASG 61
                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840   469 DAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVG 528
Cdd:smart00382  62 SGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVIL 121
PRK12726 PRK12726
flagellar biosynthesis regulator FlhF; Provisional
392-590 1.30e-08

flagellar biosynthesis regulator FlhF; Provisional


Pssm-ID: 183704 [Multi-domain]  Cd Length: 407  Bit Score: 57.44  E-value: 1.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 392 VVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSAlhppEKHGGRTMVQLFEkgygkdaa 471
Cdd:PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDV----ELIVATSPAELEE-------- 275
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 472 giAMEAIAFArnQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEAlvGNEAVDQLVKFNRaladhsMAQTP 551
Cdd:PRK12726 276 --AVQYMTYV--NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSS--GMKSADVMTILPK------LAEIP 343
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 966988840 552 rlIDGIVLTKFDTIdDKVGAAISMTYITSKPIVFVGTGQ 590
Cdd:PRK12726 344 --IDGFIITKMDET-TRIGDLYTVMQETNLPVLYMTDGQ 379
SRP54_N pfam02881
SRP54-type protein, helical bundle domain;
290-361 1.37e-08

SRP54-type protein, helical bundle domain;


Pssm-ID: 460734 [Multi-domain]  Cd Length: 75  Bit Score: 51.70  E-value: 1.37e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966988840  290 GGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEG-KVMGTFSTVTSTVKQAL 361
Cdd:pfam02881   3 EKLSSLFKGLRGKGKIDEEDLEEALKELEEALLEADVGVEVVKKIIERLREKAVGeKKLKPPQEVKKILKEEL 75
flhF PRK14722
flagellar biosynthesis regulator FlhF; Provisional
388-590 4.42e-08

flagellar biosynthesis regulator FlhF; Provisional


Pssm-ID: 173185 [Multi-domain]  Cd Length: 374  Bit Score: 55.50  E-value: 4.42e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 388 QRPYVVTFCGVNGVGKSTNLAKISF-WLLENGFS-VLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRtmVQLfekg 465
Cdd:PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAArCVMRFGASkVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD--LQL---- 208
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 466 ygkdaagiameAIAFARNQgfDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADH 545
Cdd:PRK14722 209 -----------ALAELRNK--HMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQ 275
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 966988840 546 SMAQTPRLIdGIVLTKFDTIDDkVGAAISMTYITSKPIVFVGTGQ 590
Cdd:PRK14722 276 PKAALPDLA-GCILTKLDEASN-LGGVLDTVIRYKLPVHYVSTGQ 318
flhF PRK11889
flagellar biosynthesis protein FlhF;
393-590 4.53e-08

flagellar biosynthesis protein FlhF;


Pssm-ID: 183360 [Multi-domain]  Cd Length: 436  Bit Score: 55.84  E-value: 4.53e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 393 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLsalhppekhgGRTMVQLfekgygKDAAG 472
Cdd:PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI----------GFEVIAV------RDEAA 307
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 473 IAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLV-LFVGEALVGNEAVDQLVKFNRAladHsmaqtp 551
Cdd:PRK11889 308 MTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFKDI---H------ 378
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 966988840 552 rlIDGIVLTKFDTIDDKvGAAISMTYITSKPIVFVGTGQ 590
Cdd:PRK11889 379 --IDGIVFTKFDETASS-GELLKIPAVSSAPIVLMTDGQ 414
PRK12727 PRK12727
flagellar biosynthesis protein FlhF;
392-607 6.89e-08

flagellar biosynthesis protein FlhF;


Pssm-ID: 237182 [Multi-domain]  Cd Length: 559  Bit Score: 55.38  E-value: 6.89e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 392 VVTFCGVNGVGKSTNLAKISFWLLENGF--SVLIAACDTFRAGAVEQLRTHTRRLS-ALHppEKHGGRTMVQLFEkgygk 468
Cdd:PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAAQHAprDVALVTTDTQRVGGREQLHSYGRQLGiAVH--EADSAESLLDLLE----- 424
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 469 daagiameaiafaRNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLfvgeALVGNEAVDQLVKFNRALAdHSMA 548
Cdd:PRK12727 425 -------------RLRDYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLL----VLPANAHFSDLDEVVRRFA-HAKP 486
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 549 QtprlidGIVLTKFDTIdDKVGAAISMTYITSKPIVFVGTGQTYC-DLRSLNAKAVVAAL 607
Cdd:PRK12727 487 Q------GVVLTKLDET-GRFGSALSVVVDHQMPITWVTDGQRVPdDLHRANAASLVLRL 539
flhF PRK06731
flagellar biosynthesis regulator FlhF; Validated
393-590 1.85e-07

flagellar biosynthesis regulator FlhF; Validated


Pssm-ID: 75717 [Multi-domain]  Cd Length: 270  Bit Score: 52.83  E-value: 1.85e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 393 VTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSalhppekhggrtmvqlFEKGYGKDAAG 472
Cdd:PRK06731  78 IALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIG----------------FEVIAVRDEAA 141
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 473 IAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLV-LFVGEALVGNEAVDQLVKFNRAladHsmaqtp 551
Cdd:PRK06731 142 MTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYIcLTLSASMKSKDMIEIITNFKDI---H------ 212
                        170       180       190
                 ....*....|....*....|....*....|....*....
gi 966988840 552 rlIDGIVLTKFDTIDDKvGAAISMTYITSKPIVFVGTGQ 590
Cdd:PRK06731 213 --IDGIVFTKFDETASS-GELLKIPAVSSAPIVLMTDGQ 248
PRK12724 PRK12724
flagellar biosynthesis regulator FlhF; Provisional
303-590 2.09e-07

flagellar biosynthesis regulator FlhF; Provisional


Pssm-ID: 183703 [Multi-domain]  Cd Length: 432  Bit Score: 53.81  E-value: 2.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 303 KSLSREDMESVLDKMRDHLIAKNVAADIAvqlcESVANKLEGKVmgtfSTVTSTVKQALQESLVQILQPQRRVDmlRDIM 382
Cdd:PRK12724 146 TTIVRKEKDSPLQRLGERLVREGMSQSYV----EEMASKLEERL----SPVDQGRNHNVTERAVTYLEERVSVD--SDLF 215
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 383 DAQRRQRPYVVTFCGVNGVGKSTNLAKISF-WLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHggrtmVQL 461
Cdd:PRK12724 216 SGTGKNQRKVVFFVGPTGSGKTTSIAKLAAkYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKD-----IKK 290
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 462 FEKGYGKDaagiameaiafarnqGFDVVLVDTAGRMQDNAPLMTALAKLITVntpdlvlfVGEalvgNEAVDQLVKFNRA 541
Cdd:PRK12724 291 FKETLARD---------------GSELILIDTAGYSHRNLEQLERMQSFYSC--------FGE----KDSVENLLVLSST 343
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....
gi 966988840 542 LADHSMAQTPRLIDG-----IVLTKFDTIdDKVGAAISMTYITSKPIVFVGTGQ 590
Cdd:PRK12724 344 SSYHHTLTVLKAYESlnyrrILLTKLDEA-DFLGSFLELADTYSKSFTYLSVGQ 396
CbiA pfam01656
CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid ...
400-563 2.49e-06

CobQ/CobB/MinD/ParA nucleotide binding domain; This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.


Pssm-ID: 426369 [Multi-domain]  Cd Length: 228  Bit Score: 48.88  E-value: 2.49e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  400 GVGKSTNLAKISFWLLENGFSVLIAACD-----TFRAGAVEQLRTHTRRLSALHPPEKH------------------GGR 456
Cdd:pfam01656   9 GVGKTTLAANLARALARRGLRVLLIDLDpqsnnSSVEGLEGDIAPALQALAEGLKGRVNldpillkeksdeggldliPGN 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  457 TMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNapLMTAL---AKLITVNTPDLVLFVGealvgneaVD 533
Cdd:pfam01656  89 IDLEKFEKELLGPRKEERLREALEALKEDYDYVIIDGAPGLGEL--LRNALiaaDYVIIPLEPEVILVED--------AK 158
                         170       180       190
                  ....*....|....*....|....*....|
gi 966988840  534 QLVKFNRALADHSMAQTPRLIdGIVLTKFD 563
Cdd:pfam01656 159 RLGGVIAALVGGYALLGLKII-GVVLNKVD 187
MeaB pfam03308
Methylmalonyl Co-A mutase-associated GTPase MeaB; Family members were previously thought to be ...
375-550 9.75e-05

Methylmalonyl Co-A mutase-associated GTPase MeaB; Family members were previously thought to be ArgK proteins acting as ATPase enzymes and kinases. They are now believed to be methylmalonyl Co-A mutase-associated GTPase MeaB. Structural studies of MeaB and the human ortholog (methylmalonyl associated protein A) MMAA, reveal alpha-helical domains at the N- and C-termini as well as a Ras-like GTPase domain. Mutational analysis of MeaB, show prohibited growth in Methylobacterium due to the inability to convert methylmalonyl-CoA to succinyl-CoA caused by an inactive form of methylmalonyl-CoA mutatase (mcm). In humans, mutations in (MMAA) are associated with the fatal disease methylmalonyl aciduria.


Pssm-ID: 281323 [Multi-domain]  Cd Length: 272  Bit Score: 44.35  E-value: 9.75e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  375 VDMLRDIMdaQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD---TFRAGAVEQLRTHTRRLSAlHP-- 449
Cdd:pfam03308  20 RELLRRLM--PRAGRAHRVGVTGVPGAGKSTLIEALGMELRRRGHRVAVLAVDpssPRTGGSILGDKTRMDRLAV-DPga 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840  450 ---PEKHGGRtmvqlfekgygkdAAGIAM---EAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTP----DL- 518
Cdd:pfam03308  97 firPSPSRGA-------------LGGLSRktrEVVLLLEAAGFDVIIIETVGVGQSEVDVANMVDTFVLLTMPgggdELq 163
                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 966988840  519 -----VLFVGEALVGNEAVDQLVKFNRALADHSMAQT 550
Cdd:pfam03308 164 gikagIMEIADIYVVNKADGNLPGAERAARELRAALH 200
MMAA-like cd03114
methylmalonic aciduria associated protein; Methylmalonyl Co-A mutase-associated GTPase MeaB ...
364-580 5.30e-03

methylmalonic aciduria associated protein; Methylmalonyl Co-A mutase-associated GTPase MeaB and its human homolog, methylmalonic aciduria associated protein (MMAA) are metallochaperones that function as a G-protein chaperone that assists AdoCbl cofactor delivery to the methylmalonyl-CoA mutase (MCM) and reactivation of the enzyme during catalysis. A member of the family, Escherichia coli ArgK, was previously thought to be a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.


Pssm-ID: 349768  Cd Length: 252  Bit Score: 39.09  E-value: 5.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 364 SLVQILQPQRRVdMLRDIMDAQRRQ--RPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACD---TFRAGAVEQLR 438
Cdd:cd03114   19 TLVESGRPDHRE-LAQELLDALLPQagRAFRVGITGPPGAGKSTLIEALGRLLREQGHRVAVLAVDpssPRSGGSILGDK 97
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966988840 439 THTRRLSAlhppekHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNaplmTALAKLItvntpDL 518
Cdd:cd03114   98 TRMQRLAR------DPNAFIRPSPSRGTLGGVARATREAILLCEAAGYDVVLVETVGVGQSE----VAVADMV-----DT 162
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966988840 519 VLFVGEALVGNEAvdQLVKfnRALADHSmaqtprliDGIVLTKFDTiDDKVGAAISMTYITS 580
Cdd:cd03114  163 FVLLLPPGGGDEL--QGIK--AGIMEIA--------DLVVVNKADG-DLKTGARRAQRELTS 211
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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