|
Name |
Accession |
Description |
Interval |
E-value |
| Rab_bind |
pfam16704 |
Rab binding domain; This coiled-coil domain, found in GRIP and coiled-coil domain-containing ... |
1553-1617 |
1.48e-26 |
|
Rab binding domain; This coiled-coil domain, found in GRIP and coiled-coil domain-containing protein 2 and RANBP2-like and GRIP domain-containing protein, has been shown to bind to Rab in GRIP and coiled-coil domain-containing protein 2.
Pssm-ID: 435531 Cd Length: 65 Bit Score: 104.05 E-value: 1.48e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966982775 1553 EPPLWHAEFTKEELVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKS 1617
Cdd:pfam16704 1 EPFVWTVEPSKSELTQKLSTTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQEREKS 65
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
808-1483 |
3.24e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 81.64 E-value: 3.24e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 808 DKKVFELEKEIKCLQEEsvvqCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEE 887
Cdd:TIGR02168 273 RLEVSELEEEIEELQKE----LYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 888 VSQTCNKNEIHNEKEKcsiKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKE 967
Cdd:TIGR02168 349 LKEELESLEAELEELE---AELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 968 KEEKINKIKLVAVKA-----KKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEK 1042
Cdd:TIGR02168 426 LLKKLEEAELKELQAeleelEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1043 ERANNFEHHVEDLTRQLrnsTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEK-------LQK 1115
Cdd:TIGR02168 506 EGVKALLKNQSGLSGIL---GVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRvtflpldSIK 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1116 EQKIK----EHATTVNELEELQVQLQKEKKQLQKTMQEL---ELVKKDAQQTTLMNMEIADYERLM-------------- 1174
Cdd:TIGR02168 583 GTEIQgndrEILKNIEGFLGVAKDLVKFDPKLRKALSYLlggVLVVDDLDNALELAKKLRPGYRIVtldgdlvrpggvit 662
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1175 ---KELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIK-------QLLVKTKKELADSKQAE 1244
Cdd:TIGR02168 663 ggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRkeleelsRQISALRKDLARLEAEV 742
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1245 TDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEH---LKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATV 1321
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEieeLEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1322 TSEFESYKVRVHNVLKQ----QKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLER 1397
Cdd:TIGR02168 823 RERLESLERRIAATERRledlEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1398 HNKMLQETVSKEAELREKlcsiqsenMMMKSEHTQTVSQLTSQNEVLRNSFRDQVRHLQEEHRKTVETLQQQLSRVEAQL 1477
Cdd:TIGR02168 903 LRELESKRSELRRELEEL--------REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRL 974
|
....*.
gi 966982775 1478 FQLKNE 1483
Cdd:TIGR02168 975 KRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
433-1226 |
1.82e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 79.33 E-value: 1.82e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 433 KEQHQKEISELNETfLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEailnyesLREIMEILQTELGESAGKISqEFESMK 512
Cdd:TIGR02168 234 LEELREELEELQEE-LKEAEEELEELTAELQELEEKLEELRLEVSE-------LEEEIEELQKELYALANEIS-RLEQQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 513 QQQASDVHELQQKLRTAFTEKDALLETVNHLQgenEKLLSQQELVPELENTIKNLEEKngvyllsLSQRDTMLKELEAKI 592
Cdd:TIGR02168 305 QILRERLANLERQLEELEAQLEELESKLDELA---EELAELEEKLEELKEELESLEAE-------LEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 593 NSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQK-----VNELTGGLEETLKEKDQNDQ 667
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKleeaeLKELQAELEELEEELEELQE 454
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 668 KLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVI---------------LKEHItELEK 732
Cdd:TIGR02168 455 ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKallknqsglsgilgvLSELI-SVDE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 733 KLQLMVEE--RDNLNKLL-ENEQVQKLFVktqlyGFLKDmgsevsedgEEKDVVNILQAVSESLAKINEEKCNLVFQCDK 809
Cdd:TIGR02168 534 GYEAAIEAalGGRLQAVVvENLNAAKKAI-----AFLKQ---------NELGRVTFLPLDSIKGTEIQGNDREILKNIEG 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 810 KVFELEKEIKCLQEES---------VVQCEELKSLLRDY----------------------------EQEKVLL--RKEL 850
Cdd:TIGR02168 600 FLGVAKDLVKFDPKLRkalsyllggVLVVDDLDNALELAkklrpgyrivtldgdlvrpggvitggsaKTNSSILerRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 851 EEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEvsqtcnkneihnekekcsikehenLKPLLEQKESELRDTRAEL 930
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQ------------------------LRKELEELSRQISALRKDL 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 931 ILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEKDQL 1010
Cdd:TIGR02168 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1011 SASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLL 1090
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEEL---SEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1091 EVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQL-QKTMQELELVKKDAQQTTlmnMEIAD 1169
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIE---DDEEE 969
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 966982775 1170 YERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKI 1226
Cdd:TIGR02168 970 ARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEI 1026
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
451-1214 |
9.76e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 9.76e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 451 SEKEKLTLMFEIQGLKEQCDNLQQEKQEAilnyeslREIMEILQTELGESAGKISqEFESMKQQQASDVHELQQKLRTAF 530
Cdd:TIGR02168 223 RELELALLVLRLEELREELEELQEELKEA-------EEELEELTAELQELEEKLE-ELRLEVSELEEEIEELQKELYALA 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 531 TEKDALLETVNHLQGENEKLLSQQElvpELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKNSY 610
Cdd:TIGR02168 295 NEISRLEQQKQILRERLANLERQLE---ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 611 EEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLmvQMKVLSEDKEVLSAEV 690
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA--ELKELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 691 KSLYEENNKLSSEKKQLSRDLEVflsqkndviLKEHITELEKKLQLMVEERDNLNKLLENEQ------VQKLFVKTQLYG 764
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEE---------AEQALDAAERELAQLQARLDSLERLQENLEgfsegvKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 765 FLKDMGSEVS-EDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQEK 843
Cdd:TIGR02168 521 ILGVLSELISvDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 844 VLLRKELEEIQSEKEALQSDLL-------EMKNANEKTRLENQNLLIQVEEvSQTCNKNEIhnekekcSIKEHENLKPLL 916
Cdd:TIGR02168 601 LGVAKDLVKFDPKLRKALSYLLggvlvvdDLDNALELAKKLRPGYRIVTLD-GDLVRPGGV-------ITGGSAKTNSSI 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 917 EQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKiklvavkAKKELDSSRKETQTV 996
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISA-------LRKDLARLEAEVEQL 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 997 REELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEkerannfehhVEDLTRQLRNSTLQCEKINSDNEDL 1076
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ----------IEQLKEELKALREALDELRAELTLL 815
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1077 LARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKD 1156
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*...
gi 966982775 1157 AQQttlMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQS 1214
Cdd:TIGR02168 896 LEE---LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| GRIP |
pfam01465 |
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in ... |
1618-1661 |
7.66e-12 |
|
GRIP domain; The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi. The GRIP domain contains a completely conserved tyrosine residue. At least some of these domains have been shown to bind to GTPase Arl1, see structures in.
Pssm-ID: 460221 [Multi-domain] Cd Length: 44 Bit Score: 61.22 E-value: 7.66e-12
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 966982775 1618 AANLEYLKNVLLQFIFLKPGSERERLLPVINTMLQLSPEEKGKL 1661
Cdd:pfam01465 1 GANLEYLKNVLLQFLESKESSERKQLLPVIATLLKFSPEEEQKI 44
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
70-751 |
2.08e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 2.08e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 70 TDDIIKALTERLDAILLEKAETEQQCLSLKKENIKMKQEVEDSVTKMEDAHKE---LEQSHINYVKEIENLKNELMAVRA 146
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEisrLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 147 KYSEDKA---NLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDattdEKKETVTQLQ 223
Cdd:TIGR02168 324 QLEELESkldELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA----QLELQIASLN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 224 NIIEANSQHyqknINSLQEELLQLKAIHQEEVKELMcqiEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELE 303
Cdd:TIGR02168 400 NEIERLEAR----LERLEDRRERLQQEIEELLKKLE---EAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 304 NLRKATSNANQDNQMCSLLFQENTFVEQV--VNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFH 381
Cdd:TIGR02168 473 AEQALDAAERELAQLQARLDSLERLQENLegFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAALGGRLQAVVV 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 382 EREDLEFKINELLLAKEEQGCVIEKLKSEL-AGLNKQFCCTVEQHNKEVQSLKE--QHQKEISELNETFLSDS------- 451
Cdd:TIGR02168 553 ENLNAAKKAIAFLKQNELGRVTFLPLDSIKgTEIQGNDREILKNIEGFLGVAKDlvKFDPKLRKALSYLLGGVlvvddld 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 452 ------------------EKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQ 513
Cdd:TIGR02168 633 nalelakklrpgyrivtlDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEE 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 514 QqasdVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQElvpELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKIN 593
Cdd:TIGR02168 713 E----LEQLRKELEELSRQISALRKDLARLEAEVEQLEERIA---QLSKELTELEAEIEELEERLEEAEEELAEAEAEIE 785
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 594 SLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLM 673
Cdd:TIGR02168 786 ELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELE 865
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 674 VQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVI-----LKEHITELEKKLQLMVEERDNLNKLL 748
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRreleeLREKLAQLELRLEGLEVRIDNLQERL 945
|
...
gi 966982775 749 ENE 751
Cdd:TIGR02168 946 SEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
99-951 |
7.59e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 7.59e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 99 KKENIKMKQEVEDSVTKMEDAHKELE-------------QSHINYVKEIENLKNELMAVRAKYSEDKANLQKELEEAMNK 165
Cdd:TIGR02168 174 RKETERKLERTRENLDRLEDILNELErqlkslerqaekaERYKELKAELRELELALLVLRLEELREELEELQEELKEAEE 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 166 QLElseqlkfqnNSEDNVKKLQEEIEKIRPAF---EEQILYLQKQLDATTDEKKETVTQLQnIIEANSQHYQKNINSLQE 242
Cdd:TIGR02168 254 ELE---------ELTAELQELEEKLEELRLEVselEEEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEA 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 243 ELLQLKAiHQEEVKELMCQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYEcELENLRKATSNANQDnqmcsll 322
Cdd:TIGR02168 324 QLEELES-KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE-QLETLRSKVAQLELQ------- 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 323 fqentfvEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIK-DEFFHEREDLEFKINELLLAKEEQG 401
Cdd:TIGR02168 395 -------IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAElEELEEELEELQEELERLEEALEELR 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 402 CVIEKLKSELAGLNKQFCcTVEQHNKEVQSLKEQHQKEISELNETFLSDSEKEkltlmfEIQGLKEQCDNLQQEKQEAIL 481
Cdd:TIGR02168 468 EELEEAEQALDAAERELA-QLQARLDSLERLQENLEGFSEGVKALLKNQSGLS------GILGVLSELISVDEGYEAAIE 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 482 NYeslreIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELE 561
Cdd:TIGR02168 541 AA-----LGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLR 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 562 NTIKNLeeKNGVYLL-SLSQRDTMLKELEAKINSLTEEkDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQY 640
Cdd:TIGR02168 616 KALSYL--LGGVLVVdDLDNALELAKKLRPGYRIVTLD-GDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 641 NSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKND 720
Cdd:TIGR02168 693 IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 721 -----VILKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEEKDVVNILQAVSESLAK 795
Cdd:TIGR02168 773 aeeelAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 796 INEEKCNLVFQCDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQekvlLRKELEEIQSEKEALQSDLLEMKNANEKTR 875
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE----LSEELRELESKRSELRRELEELREKLAQLE 928
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 876 LENQNLLIQVEevsqtcNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDtraELILLKDSLAKSPSV------------ 943
Cdd:TIGR02168 929 LRLEGLEVRID------NLQERLSEEYSLTLEEAEALENKIEDDEEEARR---RLKRLENKIKELGPVnlaaieeyeelk 999
|
890
....*....|....*..
gi 966982775 944 ---------QNDLLSSV 951
Cdd:TIGR02168 1000 erydfltaqKEDLTEAK 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1074-1416 |
2.28e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.85 E-value: 2.28e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1074 EDLLARIETlqsNAKLLEVQILEVQRAKAMVDKELEAEK----LQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQE 1149
Cdd:TIGR02168 192 EDILNELER---QLKSLERQAEKAERYKELKAELRELELallvLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1150 LELVKKdaqqttlmnmEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQL 1229
Cdd:TIGR02168 269 LEELRL----------EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE 338
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1230 LVKTKKELAdskQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKtSAEQHQRTLSAYRQRVTALQE 1309
Cdd:TIGR02168 339 LAELEEKLE---ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLEL-QIASLNNEIERLEARLERLED 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1310 ESRAAKAEQATVTSEFESykvrvHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQS 1389
Cdd:TIGR02168 415 RRERLQQEIEELLKKLEE-----AELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQA 489
|
330 340
....*....|....*....|....*....
gi 966982775 1390 EHDTL--LERHNKMLQETVSKEAELREKL 1416
Cdd:TIGR02168 490 RLDSLerLQENLEGFSEGVKALLKNQSGL 518
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
115-712 |
2.80e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.47 E-value: 2.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 115 KMEDAHKELEQSHINYVKEIENLKNELMAvRAKYSEDKANLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKIR 194
Cdd:PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKR-TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 195 PAFEEqilyLQKQLDATTDEKKEtvtqlqniIEANSQHYQKNINSLQEELLQLKaihqEEVKELmcqieASAKEHETEIN 274
Cdd:PRK03918 238 EEIEE----LEKELESLEGSKRK--------LEEKIRELEERIEELKKEIEELE----EKVKEL-----KELKEKAEEYI 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 275 KLNELKENLVKQCEASEKNIqEKYECELENLRKATSNANQDNqmcsllfqentfveqvvnEKVKHLEDTLKELESQHSIL 354
Cdd:PRK03918 297 KLSEFYEEYLDELREIEKRL-SRLEEEINGIEERIKELEEKE------------------ERLEELKKKLKELEKRLEEL 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 355 KDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQfcctVEQHNKEVQSLK- 433
Cdd:PRK03918 358 EERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKE----IKELKKAIEELKk 433
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 434 -------------EQHQKEISELNETFLSDSEKEKLTLMFEIQGLKEQCDNLQQE--KQEAILNYESLREIMEILQTELG 498
Cdd:PRK03918 434 akgkcpvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVlkKESELIKLKELAEQLKELEEKLK 513
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 499 EsagkisqefesmkqqqaSDVHELQQKLRtaftEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEEKNGVYLLSL 578
Cdd:PRK03918 514 K-----------------YNLEELEKKAE----EYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEEL 572
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 579 SQRDTMLKELEAKINSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEEt 658
Cdd:PRK03918 573 AELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEE- 651
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 966982775 659 lKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLE 712
Cdd:PRK03918 652 -LEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
589-1275 |
3.56e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.08 E-value: 3.56e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 589 EAKINSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQK 668
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 669 LEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDviLKEHITELEKKLQLMVEERDNLNKLL 748
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES--LEAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 749 EN---EQVQKLFVKTQLYGFLKDMGSEVSEDGEEKDvvNILQAVSESLAKINE-EKCNLVFQCDKKVFELEKEIKCLqEE 824
Cdd:TIGR02168 382 ETlrsKVAQLELQIASLNNEIERLEARLERLEDRRE--RLQQEIEELLKKLEEaELKELQAELEELEEELEELQEEL-ER 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 825 SVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANE--KTRLENQNL----------LIQVEEVSQTC 892
Cdd:TIGR02168 459 LEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEgvKALLKNQSGlsgilgvlseLISVDEGYEAA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 893 ---------------NKNEI--------HNEKEKC------SIKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSV 943
Cdd:TIGR02168 539 ieaalggrlqavvveNLNAAkkaiaflkQNELGRVtflpldSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKAL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 944 QN--------------------------------DLL--------------SSVKELEEKLENLEKEGKEKEEKINKikl 977
Cdd:TIGR02168 619 SYllggvlvvddldnalelakklrpgyrivtldgDLVrpggvitggsaktnSSILERRREIEELEEKIEELEEKIAE--- 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 978 vavkAKKELDSSRKETQTVREELESLRSEKDQLSasmRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTR 1057
Cdd:TIGR02168 696 ----LEKALAELRKELEELEEELEQLRKELEELS---RQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1058 QLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKEHATTVNELEELQVQLQ 1137
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL----TLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1138 KEKKQLQKTMQELELVKKDAQ--------QTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKiqkqkqeTLQEEI 1209
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEelieelesELEALLNERASLEEALALLRSELEELSEELRELESKRS-------ELRREL 917
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966982775 1210 TSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLI-LQASLKGELEASQQQVEVYKIQLAEI 1275
Cdd:TIGR02168 918 EELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEaLENKIEDDEEEARRRLKRLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
984-1239 |
4.10e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 4.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 984 KELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfehhvedLTRQLRNST 1063
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLR---------VKEKIGELE 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1064 LQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQL 1143
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1144 QKTMQELELVKKDAQQTTL----MNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQY 1219
Cdd:TIGR02169 381 AETRDELKDYREKLEKLKReineLKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQL 460
|
250 260
....*....|....*....|
gi 966982775 1220 EEKNTKIKQLLVKTKKELAD 1239
Cdd:TIGR02169 461 AADLSKYEQELYDLKEEYDR 480
|
|
| Grip |
smart00755 |
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245; |
1619-1663 |
6.29e-10 |
|
golgin-97, RanBP2alpha,Imh1p and p230/golgin-245;
Pssm-ID: 197860 Cd Length: 46 Bit Score: 56.07 E-value: 6.29e-10
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 966982775 1619 ANLEYLKNVLLQFIFLKPgSERERLLPVINTMLQLSPEEKGKLAA 1663
Cdd:smart00755 2 ANFEYLKNVLLQFLTLRE-SERETLLPVISTVLQLSPEEMQKLLE 45
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
999-1280 |
2.85e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 2.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 999 ELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNfehHVEDLTRQLRNSTLQCEKINSDNEDLLA 1078
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1079 RIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAq 1158
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV- 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1159 qttlmnmeiadyerlmKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKntKIKQLLVKTKKELA 1238
Cdd:TIGR02168 389 ----------------AQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK--ELQAELEELEEELE 450
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 966982775 1239 DSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKH 1280
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLD 492
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
92-734 |
9.72e-09 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 60.52 E-value: 9.72e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 92 EQQCLSLKKENIKMK---QEVEDSVTKMEDAHKELEQSHINYVKEIENLKNELMAVRAkysedkanLQKELEEAMNKQLE 168
Cdd:pfam15921 102 EKQKFYLRQSVIDLQtklQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKC--------LKEDMLEDSNTQIE 173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 169 lseQLKFQNNSEDNVkklQEEIEKIRPAFEE---QILYLQKQLDATTDEKKET-VTQLQNIIEANSQHYQKNINSLQEEL 244
Cdd:pfam15921 174 ---QLRKMMLSHEGV---LQEIRSILVDFEEasgKKIYEHDSMSTMHFRSLGSaISKILRELDTEISYLKGRIFPVEDQL 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 245 LQLKAIHQEEVKELMCQ----IEASAKEHETEINKLNELKENLVKQCEAseknIQEKYECELENLRKATSNanqdnQMCS 320
Cdd:pfam15921 248 EALKSESQNKIELLLQQhqdrIEQLISEHEVEITGLTEKASSARSQANS----IQSQLEIIQEQARNQNSM-----YMRQ 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 321 LLFQENTF--VEQVVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKE 398
Cdd:pfam15921 319 LSDLESTVsqLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKE 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 399 E----------QGCVIEKLKSELAGLN---KQFCCTVEQHNKEVQSLKEQHQKEISELNETFLSDSekeklTLMFEIQGL 465
Cdd:pfam15921 399 QnkrlwdrdtgNSITIDHLRRELDDRNmevQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVS-----SLTAQLEST 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 466 KEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKI---SQEFESMKQQQASDVHELQ----------------QKL 526
Cdd:pfam15921 474 KEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIeatNAEITKLRSRVDLKLQELQhlknegdhlrnvqtecEAL 553
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 527 RTAFTEKDALLETVNHLQGENEKLLSQ--------QELVPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSL--- 595
Cdd:pfam15921 554 KLQMAEKDKVIEILRQQIENMTQLVGQhgrtagamQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLele 633
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 596 ------------------TEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQ--------YNSELEQKVN 649
Cdd:pfam15921 634 kvklvnagserlravkdiKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNklkmqlksAQSELEQTRN 713
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 650 ELTG-------------GLEETLKEK----DQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLE 712
Cdd:pfam15921 714 TLKSmegsdghamkvamGMQKQITAKrgqiDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE 793
|
730 740
....*....|....*....|..
gi 966982775 713 VFLSQKNDviLKEHITELEKKL 734
Cdd:pfam15921 794 VLRSQERR--LKEKVANMEVAL 813
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
619-1222 |
1.33e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 1.33e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 619 KCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLmvqmkvlSEDKEVLSAEVKSLYEENN 698
Cdd:COG1196 219 KEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEEL-------RLELEELELELEEAQAEEY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 699 KLSSEKKQLSRDLEVFLSQKNDviLKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLygflkdMGSEVSEDGE 778
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRE--LEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL------EEAEAELAEA 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 779 EKDVVNILQAVSESLAKINEEKcNLVFQCDKKVFELEKEIKCLQEesvvQCEELKSLLRDYEQEKVLLRKELEEIQSEKE 858
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELA-EELLEALRAAAELAAQLEELEE----AEEALLERLERLEEELEELEEALAELEEEEE 438
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 859 ALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKEsELRDTRAELILLKDSLA 938
Cdd:COG1196 439 EEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE-ADYEGFLEGVKAALLLA 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 939 KSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLI 1018
Cdd:COG1196 518 GLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAI 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1019 QAAESYKNLLLEYEKQSEQL--------DVEKERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLL-ARIETLQSNAKL 1089
Cdd:COG1196 598 GAAVDLVASDLREADARYYVlgdtllgrTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGgSRRELLAALLEA 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1090 LEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIAD 1169
Cdd:COG1196 678 EAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELP 757
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966982775 1170 YERLMKELNQKLSNKNNKIEDLE----------QEIKIQKQ----KQETLQEEITSLQSSVQQYEEK 1222
Cdd:COG1196 758 EPPDLEELERELERLEREIEALGpvnllaieeyEELEERYDflseQREDLEEARETLEEAIEEIDRE 824
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
85-1481 |
1.75e-08 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 60.07 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 85 LLEKAETEQQCLSLKKENIKMKQEVEDSVTKMEDAHKELEQSH---INYVKE--IENLKNELMAVRAKYSEDKAN----- 154
Cdd:TIGR01612 326 LIKILESEGEQGHIINKLIFLEKEFEDTIHKSDIYKDECLSNHlfmEDYLKDdkISPYYYEFLEEIKKIAKQRAIffyna 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 155 --------LQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKI-RPAFEEQILYLQKQLDATTDEkketvtqlqni 225
Cdd:TIGR01612 406 kklkhleiLYKHQEDILNNFHKTIERLIFEKPDPNNNNIFKDDFDEFnKPIPKSKLKALEKRFFEIFEE----------- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 226 iEANSQHYQKNI--NSLQEELLQLKAIHQEEVKELMCQIEASAKEHETEINK-LNELKENLVKQCEAS-EKNIQEKYECe 301
Cdd:TIGR01612 475 -EWGSYDIKKDIdeNSKQDNTVKLILMRMKDFKDIIDFMELYKPDEVPSKNIiGFDIDQNIKAKLYKEiEAGLKESYEL- 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 302 LENLRKatsnanqdnqmcsLLFQENTFVEQVvNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFH 381
Cdd:TIGR01612 553 AKNWKK-------------LIHEIKKELEEE-NEDSIHLEKEIKDLFDKYLEIDDEIIYINKLKLELKEKIKNISDKNEY 618
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 382 EREDLEFK---------INEllLAKEEQGCVIEKLKSE-------LAGLNKQFCCTVEQHNKEVQSLKEQHQKEISElNE 445
Cdd:TIGR01612 619 IKKAIDLKkiiennnayIDE--LAKISPYQVPEHLKNKdkiystiKSELSKIYEDDIDALYNELSSIVKENAIDNTE-DK 695
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 446 TFLS------DSEKEKLTLMfEIQGLKEQCDNLQQEKQEAIlnyESLREIMEILQTELGESAGKISQEFESMKQQQASDV 519
Cdd:TIGR01612 696 AKLDdlkskiDKEYDKIQNM-ETATVELHLSNIENKKNELL---DIIVEIKKHIHGEINKDLNKILEDFKNKEKELSNKI 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 520 HELQQKLRTAFTEKDALLETVNHLQgenekllSQQELVPELENTIKNLEEKNGVYLLSLSQRDtmlKELEAKINSLTEEK 599
Cdd:TIGR01612 772 NDYAKEKDELNKYKSKISEIKNHYN-------DQINIDNIKDEDAKQNYDKSKEYIKTISIKE---DEIFKIINEMKFMK 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 600 DDFINKLkNSYEEMDNFHK-KCEREERLILELGKKV--EQTTQYNSELEQKVNELTGGLEET---LKEKDQNDQKLEKLM 673
Cdd:TIGR01612 842 DDFLNKV-DKFINFENNCKeKIDSEHEQFAELTNKIkaEISDDKLNDYEKKFNDSKSLINEInksIEEEYQNINTLKKVD 920
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 674 VQMKVLSEDKEvlsaEVKSLYEENNKLSSEKKQ------LSRDLEVFLSQKNDVILKEHITELEK---KLQLMVEERDN- 743
Cdd:TIGR01612 921 EYIKICENTKE----SIEKFHNKQNILKEILNKnidtikESNLIEKSYKDKFDNTLIDKINELDKafkDASLNDYEAKNn 996
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 744 -----LNKLLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEE--KDVVNILQAVSESLAKINEEKCNLVfqcDKKVFELEK 816
Cdd:TIGR01612 997 elikyFNDLKANLGKNKENMLYHQFDEKEKATNDIEQKIEDanKNIPNIEIAIHTSIYNIIDEIEKEI---GKNIELLNK 1073
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 817 EIKCLQEESVVQCEELKSLLRDY------EQEKVLLRKELEEIQSEKEALQ-------SDLLEMKNANEKTRLENQNLLI 883
Cdd:TIGR01612 1074 EILEEAEINITNFNEIKEKLKHYnfddfgKEENIKYADEINKIKDDIKNLDqkidhhiKALEEIKKKSENYIDEIKAQIN 1153
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 884 QVEEVSQTCnkneIHNEKEKCSIKEHENLKPLLEQKE------SELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEK 957
Cdd:TIGR01612 1154 DLEDVADKA----ISNDDPEEIEKKIENIVTKIDKKKniydeiKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFLE 1229
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 958 LENLEKEGKEKEEKINKIKLvavkakKELDSSRKETQtvreELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQ 1037
Cdd:TIGR01612 1230 KIDEEKKKSEHMIKAMEAYI------EDLDEIKEKSP----EIENEMGIEMDIKAEMETFNISHDDDKDHHIISKKHDEN 1299
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1038 LDVEKERA------NNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSnakllevqILEVQRAKAMVDKELEAE 1111
Cdd:TIGR01612 1300 ISDIREKSlkiiedFSEESDINDIKKELQKNLLDAQKHNSDINLYLNEIANIYN--------ILKLNKIKKIIDEVKEYT 1371
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1112 KlqkeqKIKEHATTVNEleelqvQLQKEKKQLQKTMQELELVK-KDAQQTTLMNMEIadyerlmKELNQKLSNKNNKIED 1190
Cdd:TIGR01612 1372 K-----EIEENNKNIKD------ELDKSEKLIKKIKDDINLEEcKSKIESTLDDKDI-------DECIKKIKELKNHILS 1433
|
1210 1220 1230 1240 1250 1260 1270 1280
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1191 LEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNtkikQLLVKTKKEladskQAETDHLILQASLKGELEASQQqvevYKI 1270
Cdd:TIGR01612 1434 EESNIDTYFKNADENNENVLLLFKNIEMADNKS----QHILKIKKD-----NATNDHDFNINELKEHIDKSKG----CKD 1500
|
1290 1300 1310 1320 1330 1340 1350 1360
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1271 QlaeitSEKHkihehlKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRvhNVLKQQKNKSMSQAETE 1350
Cdd:TIGR01612 1501 E-----ADKN------AKAIEKNKELFEQYKKDVTELLNKYSALAIKNKFAKTKKDSEIII--KEIKDAHKKFILEAEKS 1567
|
1370 1380 1390 1400 1410 1420 1430 1440
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1351 GAKQEREHLEMLIDQLKIKLQDSQN----NLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREklCSIQSENMMM 1426
Cdd:TIGR01612 1568 EQKIKEIKKEKFRIEDDAAKNDKSNkaaiDIQLSLENFENKFLKISDIKKKINDCLKETESIEKKISS--FSIDSQDTEL 1645
|
1450 1460 1470 1480 1490
....*....|....*....|....*....|....*....|....*....|....*
gi 966982775 1427 KsehtQTVSQLTSQNEVLRnSFRDQVRHLqEEHRKTVETLQQQLSRVEAQLFQLK 1481
Cdd:TIGR01612 1646 K----ENGDNLNSLQEFLE-SLKDQKKNI-EDKKKELDELDSEIEKIEIDVDQHK 1694
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
622-1317 |
2.39e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 2.39e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 622 REERLILElgkKVEQTTQYNSELEQKVNELtgglEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLsaevkslyEENNKLS 701
Cdd:TIGR02169 153 VERRKIID---EIAGVAEFDRKKEKALEEL----EEVEENIERLDLIIDEKRQQLERLRREREKA--------ERYQALL 217
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 702 SEKkqlsRDLEVFLSQKNDVILKEHITELEKKLQLMVEERDNLNKLLEnEQVQKLFVKTQLygfLKDMGSEVSEDGEEKD 781
Cdd:TIGR02169 218 KEK----REYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEIS-ELEKRLEEIEQL---LEELNKKIKDLGEEEQ 289
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 782 VvnilqAVSESLAKINEEkcnlVFQCDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQekvlLRKELEEIQSEKEALQ 861
Cdd:TIGR02169 290 L-----RVKEKIGELEAE----IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEE----LEREIEEERKRRDKLT 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 862 SDLLEMKNANEKTRLENQNL----LIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSL 937
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVdkefAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKI 436
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 938 AKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEK--INKIKLVAV-----KAKKELDSSRKETQTVREELESLRSEKDQL 1010
Cdd:TIGR02169 437 NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQElyDLKEEYDRVekelsKLQRELAEAEAQARASEERVRGGRAVEEVL 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1011 SAS-------MRDLIQAAESYKNLL----------------------LEYEK---------------QSEQLDVEKERAN 1046
Cdd:TIGR02169 517 KASiqgvhgtVAQLGSVGERYATAIevaagnrlnnvvveddavakeaIELLKrrkagratflplnkmRDERRDLSILSED 596
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1047 ----------NFEHHVEDLTRQLRNSTLQCEKINSDNEDLL-ARIETL---------------------QSNAKLLEVQI 1094
Cdd:TIGR02169 597 gvigfavdlvEFDPKYEPAFKYVFGDTLVVEDIEAARRLMGkYRMVTLegelfeksgamtggsraprggILFSRSEPAEL 676
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1095 LEVQRAKAMVDKELEAekLQKEQKIKEhattvNELEELQVQLQKEKKQLQKTMQELELVKKDAQQttlMNMEIADYERLM 1174
Cdd:TIGR02169 677 QRLRERLEGLKRELSS--LQSELRRIE-----NRLDELSQELSDASRKIGEIEKEIEQLEQEEEK---LKERLEELEEDL 746
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1175 KELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSL-----QSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLI 1249
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966982775 1250 LQASLKGELEASQQQVEVYKIQLAEITSEKHKIH---EHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAE 1317
Cdd:TIGR02169 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNgkkEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
981-1221 |
3.00e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.93 E-value: 3.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 981 KAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKqseqlDVEKERANNFEHHVEDLTRQLR 1060
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA-----RLSHSRIPEIQAELSKLEEEVS 808
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1061 NSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKE---QKIKEHATTVNELEELQVQLQ 1137
Cdd:TIGR02169 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEeleEELEELEAALRDLESRLGDLK 888
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1138 KEKKQLQKTMQELELVKKDAqqttlmNMEIADYERLMKELNQKLSNKNNKIEDLEQEI--------------KIQKQKQE 1203
Cdd:TIGR02169 889 KERDELEAQLRELERKIEEL------EAQIEKKRKRLSELKAKLEALEEELSEIEDPKgedeeipeeelsleDVQAELQR 962
|
250 260
....*....|....*....|..
gi 966982775 1204 tLQEEITSLQS----SVQQYEE 1221
Cdd:TIGR02169 963 -VEEEIRALEPvnmlAIQEYEE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
822-1366 |
4.13e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.41 E-value: 4.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 822 QEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEvsqtcnKNEIHNEK 901
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEE------AQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 902 EKCSIKEHENLKPLLEQKEsELRDTRAELILLKDSLAKSpsvQNDLLSSVKELEEKLENLEKEGKEkeekinkiklvavk 981
Cdd:COG1196 294 LAELARLEQDIARLEERRR-ELEERLEELEEELAELEEE---LEELEEELEELEEELEEAEEELEE-------------- 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 982 AKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRN 1061
Cdd:COG1196 356 AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL---EEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1062 STLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKK 1141
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1142 QLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEE 1221
Cdd:COG1196 513 ALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAAL 592
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1222 KNTKIKQ---LLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLS 1298
Cdd:COG1196 593 ARGAIGAavdLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966982775 1299 AYRQRVTALQEESRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQL 1366
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEE 740
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1101-1472 |
2.71e-07 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 55.83 E-value: 2.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1101 KAMVDKELEAEKLQKEQKIKEHATTVNELEELQVqlqkekkqLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQK 1180
Cdd:PRK10929 16 GAYAATAPDEKQITQELEQAKAAKTPAQAEIVEA--------LQSALNWLEERKGSLERAKQYQQVIDNFPKLSAELRQQ 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1181 LSNKNNKIEDLEQEIKIQKQKQETLQeeITSlqssvqqyeekntkikQLLvktkkELADSKQAETDHLILQASLKGELea 1260
Cdd:PRK10929 88 LNNERDEPRSVPPNMSTDALEQEILQ--VSS----------------QLL-----EKSRQAQQEQDRAREISDSLSQL-- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1261 SQQQVEVYKiQLAEITSeKHKIHEHLKTSAEQHQRtlsayrqrvTALQEESRAAKAeqatVTSEFESYKVRVHNvlKQQk 1340
Cdd:PRK10929 143 PQQQTEARR-QLNEIER-RLQTLGTPNTPLAQAQL---------TALQAESAALKA----LVDELELAQLSANN--RQE- 204
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1341 nksMSQAETEGAKQEREHLEMLIDQLKIKLqdsqNNLQMNVSElQTLqsEHDTLLERHNKMLQETVSKEAELREKLCSI- 1419
Cdd:PRK10929 205 ---LARLRSELAKKRSQQLDAYLQALRNQL----NSQRQREAE-RAL--ESTELLAEQSGDLPKSIVAQFKINRELSQAl 274
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*...
gi 966982775 1420 --QSENM-MMKSEHTQTVSQLTSQNEVLrNSFRDQVRHLQEEhrkTV--ETLQQQLSR 1472
Cdd:PRK10929 275 nqQAQRMdLIASQQRQAASQTLQVRQAL-NTLREQSQWLGVS---NAlgEALRAQVAR 328
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
977-1232 |
3.01e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 3.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 977 LVAVKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANnfeHHVEDLT 1056
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLK---ERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1057 RQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVD-KELEAEKLQKEQKIKEHATTVNELEELQVQ 1135
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1136 LQKEKKQLQKTMQELELVKKDAQ-QTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQS 1214
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKeQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250 260
....*....|....*....|..
gi 966982775 1215 SVQQ----YEEKNTKIKQLLVK 1232
Cdd:TIGR02169 904 KIEEleaqIEKKRKRLSELKAK 925
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
814-1458 |
2.65e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 52.66 E-value: 2.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 814 LEKEIKCLQEESVVQCEELKSL--LRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTR--------LENQNLLI 883
Cdd:TIGR00618 224 LEKELKHLREALQQTQQSHAYLtqKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINrarkaaplAAHIKAVT 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 884 QVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEK 963
Cdd:TIGR00618 304 QIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHT 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 964 EGKEKEEKINKIKLvavkAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKE 1043
Cdd:TIGR00618 384 LQQQKTTLTQKLQS----LCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKI 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1044 RANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDkELEAEKLQKEQKIKEHA 1123
Cdd:TIGR00618 460 HLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDID-NPGPLTRRMQRGEQTYA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1124 TTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMN---MEIADYERLMKELNQKLSNKNNKIED----LEQEIK 1196
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDnrsKEDIPNLQNITVRLQDLTEKLSEAEDmlacEQHALL 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1197 IQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKE-----LADSKQAETDHLILQASLKGELEASQQQVEVYKIQ 1271
Cdd:TIGR00618 619 RKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQErvrehALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1272 LAEITSEKHKIHEHLKTSAEQhqrtlsayrqrvtaLQEESRAAKAEQATVTSEFESYKVRVHNVLKQQKNKSMSQAETEG 1351
Cdd:TIGR00618 699 LAQCQTLLRELETHIEEYDRE--------------FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHF 764
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1352 AKQEREHLEMLID----QLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMMK 1427
Cdd:TIGR00618 765 NNNEEVTAALQTGaelsHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATL 844
|
650 660 670
....*....|....*....|....*....|.
gi 966982775 1428 SEHTQTVSQLTSQNEVLRNSFRDQVRHLQEE 1458
Cdd:TIGR00618 845 GEITHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
627-1416 |
2.73e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 627 ILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKL--SSEK 704
Cdd:pfam02463 137 FLVQGGKIEIIAMMKPERRLEIEEEAAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALeyYQLK 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 705 KQLSRDLEVFLSQKNDVILKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEEKDVVN 784
Cdd:pfam02463 217 EKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEE 296
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 785 ILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQEKV----LLRKELEEIQSEKEAL 860
Cdd:pfam02463 297 ELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEeeeeLEKLQEKLEQLEEELL 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 861 QSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAKS 940
Cdd:pfam02463 377 AKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQ 456
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 941 PSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEK-DQLSASMRDLIQ 1019
Cdd:pfam02463 457 ELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRiISAHGRLGDLGV 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1020 AAESYKNL-LLEYEKQSEQLDVEKERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQ 1098
Cdd:pfam02463 537 AVENYKVAiSTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEAD 616
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1099 RAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELN 1178
Cdd:pfam02463 617 EDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILR 696
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1179 QKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGEL 1258
Cdd:pfam02463 697 RQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKEL 776
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1259 EASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVHNVLKQ 1338
Cdd:pfam02463 777 AEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEEL 856
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 966982775 1339 QKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKL 1416
Cdd:pfam02463 857 ERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYE 934
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
922-1416 |
2.79e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.25 E-value: 2.79e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 922 ELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELE 1001
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRR 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1002 SLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIE 1081
Cdd:COG1196 313 ELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA---EAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1082 TLQSNAKLLEVQILEVQRAKAmvdkELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELvkkdaqqtt 1161
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEE----ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE--------- 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1162 lmnmEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTK------K 1235
Cdd:COG1196 457 ----EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAvavligV 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1236 ELADSKQAETDHLILQASLKGELEASQQQVEVY---------------KIQLAEITSEKHKIHEHLK----TSAEQHQRT 1296
Cdd:COG1196 533 EAAYEAALEAALAAALQNIVVEDDEVAAAAIEYlkaakagratflpldKIRARAALAAALARGAIGAavdlVASDLREAD 612
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1297 LSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVhnVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNN 1376
Cdd:COG1196 613 ARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLRE--VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE 690
|
490 500 510 520
....*....|....*....|....*....|....*....|
gi 966982775 1377 LQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKL 1416
Cdd:COG1196 691 EELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQL 730
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1067-1332 |
3.74e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 3.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1067 EKINSDNEDLLARIETLQSNAKLLEV---QILEV-------QRAKAMVDKELEAekLQKEQKIKEHATTVNELEELQVQL 1136
Cdd:COG3206 107 EDPLGEEASREAAIERLRKNLTVEPVkgsNVIEIsytspdpELAAAVANALAEA--YLEQNLELRREEARKALEFLEEQL 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1137 QKEKKQLQKTMQELELVKKD------AQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEiT 1210
Cdd:COG3206 185 PELRKELEEAEAALEEFRQKnglvdlSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQS-P 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1211 SLQSSVQQYEEKNTKIKQLL----------VKTKKELADSKQAetdhliLQASLKGELEASQQQVEVYKIQLAEITSEKH 1280
Cdd:COG3206 264 VIQQLRAQLAELEAELAELSarytpnhpdvIALRAQIAALRAQ------LQQEAQRILASLEAELEALQAREASLQAQLA 337
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 966982775 1281 KIHEHLKTSAEQhQRTLSAYRQRVTALQE--ESRAAKAEQATVTSEFESYKVRV 1332
Cdd:COG3206 338 QLEARLAELPEL-EAELRRLEREVEVARElyESLLQRLEEARLAEALTVGNVRV 390
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
894-1444 |
4.75e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 51.56 E-value: 4.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 894 KNEIHNEKEKCSIKEHE--NLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEK 971
Cdd:TIGR04523 109 NSEIKNDKEQKNKLEVElnKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 972 INKIKLVAVKAKKELDSSRKETQTVRE---ELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNf 1048
Cdd:TIGR04523 189 IDKIKNKLLKLELLLSNLKKKIQKNKSlesQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKK- 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1049 ehhvedltrQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQilevqrAKAMVDKELEAEKLQKEQKIKEHATTVNE 1128
Cdd:TIGR04523 268 ---------QLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQ------KEQDWNKELKSELKNQEKKLEEIQNQISQ 332
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1129 LEELQVQLQKEKKQLQKTMQELELVKKDAQ-QTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQE 1207
Cdd:TIGR04523 333 NNKIISQLNEQISQLKKELTNSESENSEKQrELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDE 412
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1208 EITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEItsekhkihehlK 1287
Cdd:TIGR04523 413 QIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI-----------K 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1288 TSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVhnvlkQQKNKSMSQAETEGAKQEREHLEMLIDQLK 1367
Cdd:TIGR04523 482 QNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKI-----EKLESEKKEKESKISDLEDELNKDDFELKK 556
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966982775 1368 IKLQDSQNNLQMNVSELQtlqsEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQNEVL 1444
Cdd:TIGR04523 557 ENLEKEIDEKNKEIEELK----QTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1178-1411 |
7.97e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 7.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1178 NQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAetdhlilQASLKGE 1257
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAE-------LAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1258 LEASQQQVEVYKIQLAE--ITSEKHKIHEHLK-----TSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTsefesykv 1330
Cdd:COG4942 92 IAELRAELEAQKEELAEllRALYRLGRQPPLAlllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA-------- 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1331 RVHNVLKQQKNKsmSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEA 1410
Cdd:COG4942 164 ALRAELEAERAE--LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
.
gi 966982775 1411 E 1411
Cdd:COG4942 242 R 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1070-1292 |
8.32e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.15 E-value: 8.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1070 NSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQE 1149
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1150 LELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEI-KIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQ 1228
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLaPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966982775 1229 LLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQ 1292
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
851-1265 |
1.03e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 50.68 E-value: 1.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 851 EEIQSEKEALQSD-LLEMKNANEKTRLEN-QNLLIQVEEVSQtcnkneihnekekcsikEHENLKPLLEQKESELRDTRA 928
Cdd:PRK11281 39 ADVQAQLDALNKQkLLEAEDKLVQQDLEQtLALLDKIDRQKE-----------------ETEQLKQQLAQAPAKLRQAQA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 929 ELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAV------KAKKELDSSRKETQTVREELES 1002
Cdd:PRK11281 102 ELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSlqtqpeRAQAALYANSQRLQQIRNLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1003 LRSEKDQLSASMRDLIQAAESYKNLLLEYEKQS------------EQLDVEKERANNFEHHVEDL-----TRQLRNSTLQ 1065
Cdd:PRK11281 182 GKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSlegntqlqdllqKQRDYLTARIQRLEHQLQLLqeainSKRLTLSEKT 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1066 CEKinSDNEDLLARIET-------LQSNAKLLEVQILEVQRAKAMVDKELEAEK-----LQKEQKIKEhattvnELEELQ 1133
Cdd:PRK11281 262 VQE--AQSQDEAARIQAnplvaqeLEINLQLSQRLLKATEKLNTLTQQNLRVKNwldrlTQSERNIKE------QISVLK 333
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1134 VQLQKEKKqLQKTMQELelvkKDAQQTTLMNMEIADYeRLMK-ELNQ---KLSNKNNKIEDLEqeikiQKQKQETLQEEI 1209
Cdd:PRK11281 334 GSLLLSRI-LYQQQQAL----PSADLIEGLADRIADL-RLEQfEINQqrdALFQPDAYIDKLE-----AGHKSEVTDEVR 402
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 966982775 1210 TSLQSsvqqyeekntkikqlLVKTKKELAD--SKQaetdhLILQASLKGELEASQQQV 1265
Cdd:PRK11281 403 DALLQ---------------LLDERRELLDqlNKQ-----LNNQLNLAINLQLNQQQL 440
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
603-1176 |
1.20e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 603 INKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKdqndQKLEKLMVQMKVLSED 682
Cdd:PRK03918 171 IKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEV----KELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 683 KEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVilkEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQL 762
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL---KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEI 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 763 YGFLKDMgsevsEDGEEKdvvnilqavSESLAKINEEKCNLvfqcDKKVFELEKEIKCLQE--ESVVQCEELKSLLRDYE 840
Cdd:PRK03918 324 NGIEERI-----KELEEK---------EERLEELKKKLKEL----EKRLEELEERHELYEEakAKKEELERLKKRLTGLT 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 841 QEKvlLRKELEEIQSEKEALQ---SDLLEMKNANEKTRLENQNLLIQVEEVSQTCN--KNEIHNEKEKCSIKEH----EN 911
Cdd:PRK03918 386 PEK--LEKELEELEKAKEEIEeeiSKITARIGELKKEIKELKKAIEELKKAKGKCPvcGRELTEEHRKELLEEYtaelKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 912 LKPLLEQKESELRDTRAELILLKDSLAKSPsvqnDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRK 991
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKES----ELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 992 ETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQ--SEQLDVEKE------------RANNFEHHVEDLTR 1057
Cdd:PRK03918 540 EIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfESVEELEERlkelepfyneylELKDAEKELEREEK 619
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1058 QLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDK-ELEAEKLQKEQKIKEHATTVNELEELQVQL 1136
Cdd:PRK03918 620 ELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYlELSRELAGLRAELEELEKRREEIKKTLEKL 699
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 966982775 1137 QKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKE 1176
Cdd:PRK03918 700 KEELEEREKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
575-813 |
1.35e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.01 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 575 LLSLSQRDTMLKELEAKINSLTEEKDDFINKLknsyeemDNFHKKCEREERLILELGKKveqTTQYNSELEQKVNELtgg 654
Cdd:PHA02562 159 LLDISVLSEMDKLNKDKIRELNQQIQTLDMKI-------DHIQQQIKTYNKNIEEQRKK---NGENIARKQNKYDEL--- 225
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 655 leetLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVF------------LSQKNDVI 722
Cdd:PHA02562 226 ----VEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYekggvcptctqqISEGPDRI 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 723 --LKEHITELEKKLQLMVEERDNLNKLLE--NEQVQKLF-VKTQLYGFLKDMGSEVSEDGEEKDVVNILQA----VSESL 793
Cdd:PHA02562 302 tkIKDKLKELQHSLEKLDTAIDELEEIMDefNEQSKKLLeLKNKISTNKQSLITLVDKAKKVKAAIEELQAefvdNAEEL 381
|
250 260
....*....|....*....|
gi 966982775 794 AKINEEKCNLVFQCDKKVFE 813
Cdd:PHA02562 382 AKLQDELDKIVKTKSELVKE 401
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
74-357 |
1.43e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.94 E-value: 1.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 74 IKALTERLDAILLEKAETEQQCLSLKKEnikmKQEVEDSVTKMEDAHKELEQSHINYVKEIENLKNELmavrAKYSEDKA 153
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAE----LAELEAELEELRLELEELELELEEAQAEEYELLAEL----ARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 154 NLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHY 233
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELA 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 234 QKNINSLQEELLQLKAIHQEEVKELmcQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELENLRKATSNAN 313
Cdd:COG1196 386 EELLEALRAAAELAAQLEELEEAEE--ALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLE 463
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 966982775 314 QDnqmcsllfQENTFVEQVVNEKVKHLEDTLKELESQHSILKDE 357
Cdd:COG1196 464 LL--------AELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1141-1370 |
1.50e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 1.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1141 KQLQKTMQELELVKKdaqqttlmnmEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYE 1220
Cdd:COG4942 20 DAAAEAEAELEQLQQ----------EIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1221 EKNTKIKQLLVKTKKELAD------------------SKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKhki 1282
Cdd:COG4942 90 KEIAELRAELEAQKEELAEllralyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALR--- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1283 hEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVHNVLKQQKN--KSMSQAETEGAKQEREHLE 1360
Cdd:COG4942 167 -AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEEleALIARLEAEAAAAAERTPA 245
|
250
....*....|
gi 966982775 1361 MLIDQLKIKL 1370
Cdd:COG4942 246 AGFAALKGKL 255
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1008-1239 |
1.69e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.91 E-value: 1.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1008 DQLSASMRDLiqaaESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLT--RQLRnSTLQCEKINSDNEDLLARIETLQS 1085
Cdd:COG4913 228 DALVEHFDDL----ERAHEALEDAREQIELLEPIRELAERYAAARERLAelEYLR-AALRLWFAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1086 NAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKEHATtvNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTL-MN 1164
Cdd:COG4913 303 ELARLEAELERLEARL----DALREELDELEAQIRGNGG--DRLEQLEREIERLERELEERERRRARLEALLAALGLpLP 376
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966982775 1165 MEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELAD 1239
Cdd:COG4913 377 ASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
334-775 |
1.73e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 49.63 E-value: 1.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 334 NEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKdEFFHEREDLEFKINELLLAKEEQGCVIEKLKSELAG 413
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLK-KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINE 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 414 LNKQFCCTVEQHNK---EVQSLKEQHQKEISELNETFLSDSEKEKltlmfEIQGLKEQCDNLQQEKQEAILNY-----ES 485
Cdd:TIGR04523 244 KTTEISNTQTQLNQlkdEQNKIKKQLSEKQKELEQNNKKIKELEK-----QLNQLKSEISDLNNQKEQDWNKElkselKN 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 486 LREIMEILQTELGESAGKISQefesMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIK 565
Cdd:TIGR04523 319 QEKKLEEIQNQISQNNKIISQ----LNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQIN 394
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 566 NLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELE 645
Cdd:TIGR04523 395 DLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLS 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 646 QKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSR---DLEVFLSQKNDVI 722
Cdd:TIGR04523 475 RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESkisDLEDELNKDDFEL 554
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 966982775 723 LKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKDMGSEVSE 775
Cdd:TIGR04523 555 KKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEE 607
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
657-894 |
1.83e-05 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 49.54 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 657 ETLKEKDQNDQ---KLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQkndvILKEhITELEKK 733
Cdd:PRK05771 34 EDLKEELSNERlrkLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEK----IEKE-IKELEEE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 734 LQLMVEERDNLNKLLE--------NEQVQKLFVKTQLYGFLkdmgSEVSEDGEEKDVVNILQAVSEsLAKINEEKCNLVF 805
Cdd:PRK05771 109 ISELENEIKELEQEIErlepwgnfDLDLSLLLGFKYVSVFV----GTVPEDKLEELKLESDVENVE-YISTDKGYVYVVV 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 806 QCDKKVF-ELEKEIKCL--QEESVVQCEELKSLLRDYEQEkvllrkeLEEIQSEKEALQSDLLEMKNANEKTRLENQNLL 882
Cdd:PRK05771 184 VVLKELSdEVEEELKKLgfERLELEEEGTPSELIREIKEE-------LEEIEKERESLLEELKELAKKYLEELLALYEYL 256
|
250
....*....|..
gi 966982775 883 IQVEEVSQTCNK 894
Cdd:PRK05771 257 EIELERAEALSK 268
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
916-1161 |
2.28e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.61 E-value: 2.28e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 916 LEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKekeekinkiklvavKAKKELDSSRKETQT 995
Cdd:COG4942 22 AAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIR--------------ALEQELAALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 996 VREELESLRSEKDQLSASMRDLIQAAesYKNLLLEYEKqseqLDVEKERANNFEHHVEDLTRQLRNSTLQCEKINSDNED 1075
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRAL--YRLGRQPPLA----LLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1076 LLARIETLQSNAKLLEVQILEVQRAKamvdKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKK 1155
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEER----AALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
....*.
gi 966982775 1156 DAQQTT 1161
Cdd:COG4942 238 AAAERT 243
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
985-1218 |
2.41e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 985 ELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTRQLrnstl 1064
Cdd:COG4913 655 EYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL----- 729
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1065 qcekinsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDkeleaeklQKEQKIKEHATtvNELEELQVQLQKEKKQLQ 1144
Cdd:COG4913 730 ---------DELQDRLEAAEDLARLELRALLEERFAAALGD--------AVERELRENLE--ERIDALRARLNRAEEELE 790
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966982775 1145 KTMQE-LELVKKDAQQTTLMNMEIADYERLMKELnqklsnKNNKIEDLEQEIKIQKQKQETlqEEITSLQSSVQQ 1218
Cdd:COG4913 791 RAMRAfNREWPAETADLDADLESLPEYLALLDRL------EEDGLPEYEERFKELLNENSI--EFVADLLSKLRR 857
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
499-1423 |
2.49e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 49.27 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 499 ESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEEKngvyLLSL 578
Cdd:TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHN----LSKI 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 579 SQRDTMLKELEAKINSLTEEKDDFINKLKNSYE-------EMDNFHKKCERE-ERLILELGKKVEQTTQYNSELEQKVNE 650
Cdd:TIGR00606 265 MKLDNEIKALKSRKKQMEKDNSELELKMEKVFQgtdeqlnDLYHNHQRTVREkERELVDCQRELEKLNKERRLLNQEKTE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 651 LtggleetlkEKDQNDQKLEKLMVQMKVLSEDKEVLSaevkslyeenNKLSSEKKQLSRDLEVFLSQKNDVILKEHITEL 730
Cdd:TIGR00606 345 L---------LVEQGRLQLQADRHQEHIRARDSLIQS----------LATRLELDGFERGPFSERQIKNFHTLVIERQED 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 731 EKKL--QLMVEERDNLNklLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEE--KDVVNILQAVSESLAKINEEkcnlvfq 806
Cdd:TIGR00606 406 EAKTaaQLCADLQSKER--LKQEQADEIRDEKKGLGRTIELKKEILEKKQEelKFVIKELQQLEGSSDRILEL------- 476
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 807 cDKKVFELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKealqsdllemKNANEKTRLENQNLLIQVE 886
Cdd:TIGR00606 477 -DQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQ----------LNHHTTTRTQMEMLTKDKM 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 887 EVSQTCNKNEIHNEKEKCSIKEHENLKPLLE----QKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLE 962
Cdd:TIGR00606 546 DKDEQIRKIKSRHSDELTSLLGYFPNKKQLEdwlhSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 963 KEGKEKEEKINKIKlvavkakkELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLdveK 1042
Cdd:TIGR00606 626 DKLFDVCGSQDEES--------DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAEL---Q 694
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1043 ERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEH 1122
Cdd:TIGR00606 695 EFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1123 ATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTlmNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQ 1202
Cdd:TIGR00606 775 GTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA--KLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1203 ETLQEEITSLQSSV---------------------QQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEAS 1261
Cdd:TIGR00606 853 QDQQEQIQHLKSKTnelkseklqigtnlqrrqqfeEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSK 932
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1262 QQQVEVYKIQLAEITSEKHKIHEHLKT-----------SAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKV 1330
Cdd:TIGR00606 933 ETSNKKAQDKVNDIKEKVKNIHGYMKDienkiqdgkddYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKI 1012
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1331 RvHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNvsELQTLQSEHDTLLERHNKMLQETVSKEA 1410
Cdd:TIGR00606 1013 Q-ERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEE--NIDLIKRNHVLALGRQKGYEKEIKHFKK 1089
|
970
....*....|...
gi 966982775 1411 ELREKLCSIQSEN 1423
Cdd:TIGR00606 1090 ELREPQFRDAEEK 1102
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
404-760 |
2.78e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 404 IEKLKSELAGLnKQFCCTVEQHNKEVQSLKEQHQKEISEL-NETFLSDSEKEKLT-----LMFEIQGLKEQCDNLQQEKQ 477
Cdd:TIGR02169 683 LEGLKRELSSL-QSELRRIENRLDELSQELSDASRKIGEIeKEIEQLEQEEEKLKerleeLEEDLSSLEQEIENVKSELK 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 478 EAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVN-HLQGENEKLLSQQEL 556
Cdd:TIGR02169 762 ELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTlEKEYLEKEIQELQEQ 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 557 VPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEkddfinkLKNSYEEMDNFHKKCEREERLILELGKKVEQ 636
Cdd:TIGR02169 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESR-------LGDLKKERDELEAQLRELERKIEELEAQIEK 914
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 637 TTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLsAEVKSLYEENNKLSSEKKQLSRDLEvfls 716
Cdd:TIGR02169 915 KRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVE-EEIRALEPVNMLAIQEYEEVLKRLD---- 989
|
330 340 350 360
....*....|....*....|....*....|....*....|....*.
gi 966982775 717 qkndvilkehitELEKKLQLMVEERDNLNKLLE--NEQVQKLFVKT 760
Cdd:TIGR02169 990 ------------ELKEKRAKLEEERKAILERIEeyEKKKREVFMEA 1023
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1091-1390 |
4.39e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 4.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1091 EVQILEVQRAKAMVDKELEAEKLQKEQKI---------KEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTT 1161
Cdd:TIGR02169 199 QLERLRREREKAERYQALLKEKREYEGYEllkekealeRQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1162 LMNMEIADYERL-----MKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKE 1236
Cdd:TIGR02169 279 KKIKDLGEEEQLrvkekIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEE 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1237 LADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEkhkiHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKA 1316
Cdd:TIGR02169 359 YAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE----INELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 966982775 1317 EQATVTSEFESYKVRVHnvlKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSE 1390
Cdd:TIGR02169 435 KINELEEEKEDKALEIK---KQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
452-742 |
4.95e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 48.39 E-value: 4.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 452 EKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQAsDVHELQQKLRTAFT 531
Cdd:COG1196 224 ELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA-EEYELLAELARLEQ 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 532 EKDALLETVNHLQGENEKLLSQQElvpELENTIKNLEEKngvyllsLSQRDTMLKELEAKINSLTEEKDDFINKLKNSYE 611
Cdd:COG1196 303 DIARLEERRRELEERLEELEEELA---ELEEELEELEEE-------LEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 612 EMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVK 691
Cdd:COG1196 373 ELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA 452
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 966982775 692 SLYEENNKLSSEKKQLSRDLEVFLSQKNDVILKEHITELEKKLQLMVEERD 742
Cdd:COG1196 453 ELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
984-1414 |
7.67e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 7.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 984 KELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANnFEHHVEDLTRQLrnst 1063
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEA-LEAELAELPERL---- 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1064 lqcekinsdnEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQL 1143
Cdd:COG4717 149 ----------EELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1144 QktmQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSnkNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKN 1223
Cdd:COG4717 219 Q---EELEELEEELEQLENELEAAALEERLKEARLLLLI--AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1224 TKIKQLLVKTKKELADS------KQAETDHLILQASLKGELEASQQQVEVYKI-QLAEITSEKHKIHEHLKTsaEQHQRT 1296
Cdd:COG4717 294 AREKASLGKEAEELQALpaleelEEEELEELLAALGLPPDLSPEELLELLDRIeELQELLREAEELEEELQL--EELEQE 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1297 LSAYRQRVTALQEESRAAKAEQAtvtSEFESYKVRVhNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQNN 1376
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQA---EEYQELKEEL-EELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 966982775 1377 LQMNVSELQTLQSEHDTLLERHN--KMLQETVSKEAELRE 1414
Cdd:COG4717 448 LEELREELAELEAELEQLEEDGElaELLQELEELKAELRE 487
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
592-1234 |
8.02e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 592 INSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEK 671
Cdd:TIGR04523 28 ANKQDTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 672 LMVQMKVLSEDKEVLSAEVKSLYEENN-------KLSSEKKQLSRDLEVFLSQKNDviLKEHITELEKKLQLMVEERDNL 744
Cdd:TIGR04523 108 INSEIKNDKEQKNKLEVELNKLEKQKKenkknidKFLTEIKKKEKELEKLNNKYND--LKKQKEELENELNLLEKEKLNI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 745 NKLLENEQVQKLfvktQLYGFLKDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIKCLQEE 824
Cdd:TIGR04523 186 QKNIDKIKNKLL----KLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDE 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 825 SVVQCEELKSLLRDYEQEKVL---LRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEK 901
Cdd:TIGR04523 262 QNKIKKQLSEKQKELEQNNKKikeLEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLN 341
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 902 EKCSikeheNLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVK 981
Cdd:TIGR04523 342 EQIS-----QLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKK 416
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 982 AKKELDSSRKETQTVREELESLRSEKDQLSASMRDLiqaAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTRQLRN 1061
Cdd:TIGR04523 417 LQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVK---ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKS 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1062 STLQCEKINSDNEDLLARIETLQSNAKLLEVQIlevqrakamvdKELEAEKLQKEQKIKEHATTVNELEEL--QVQLQKE 1139
Cdd:TIGR04523 494 KEKELKKLNEEKKELEEKVKDLTKKISSLKEKI-----------EKLESEKKEKESKISDLEDELNKDDFElkKENLEKE 562
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1140 KKQLQKTMQELELVKKDAQQTTLMNMEIAD-YERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQ 1218
Cdd:TIGR04523 563 IDEKNKEIEELKQTQKSLKKKQEEKQELIDqKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNK 642
|
650
....*....|....*.
gi 966982775 1219 YEEKNTKIKQLLVKTK 1234
Cdd:TIGR04523 643 LKQEVKQIKETIKEIR 658
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
1074-1318 |
8.32e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.60 E-value: 8.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1074 EDLLARIETLQSNaKLLEVQilevqraKAMVDKELEA--EKLQKEQKIKEhattvnELEELQVQLQKEKKQLQKTMQELE 1151
Cdd:PRK11281 39 ADVQAQLDALNKQ-KLLEAE-------DKLVQQDLEQtlALLDKIDRQKE------ETEQLKQQLAQAPAKLRQAQAELE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1152 LVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDL----EQEIKIQKQKqETLQEEITSLQSSVQQyeekntkIK 1227
Cdd:PRK11281 105 ALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLaeynSQLVSLQTQP-ERAQAALYANSQRLQQ-------IR 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1228 QLLVKTK---KELADSKQ----AETDHLILQASL-KGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQ-HQRTLS 1298
Cdd:PRK11281 177 NLLKGGKvggKALRPSQRvllqAEQALLNAQNDLqRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAiNSKRLT 256
|
250 260
....*....|....*....|
gi 966982775 1299 AYRQRVTALQEESRAAKAEQ 1318
Cdd:PRK11281 257 LSEKTVQEAQSQDEAARIQA 276
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
451-740 |
8.99e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 8.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 451 SEKEKLTLMFE-IQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGEsagkISQEFESMKQQQASDVHELQQKLRTA 529
Cdd:TIGR02169 671 SEPAELQRLRErLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGE----IEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 530 FTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEEkngvyllslSQRDTMLKELEAKINSLTEEKDDFINKLKNS 609
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEA---------RLSHSRIPEIQAELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 610 YEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAE 689
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQ 897
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 966982775 690 VKSLYEENNKLSSEKKQLSRDLEVFLSQKNdvILKEHITELEKKLQLMVEE 740
Cdd:TIGR02169 898 LRELERKIEELEAQIEKKRKRLSELKAKLE--ALEEELSEIEDPKGEDEEI 946
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
115-866 |
9.38e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 9.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 115 KMEDAHKELEQSHINyVKEIENLKNELMAVRAKYSEDKAN------LQKELEEAmnKQLELSEQLKFQNNSEDNVKKLQE 188
Cdd:TIGR02169 171 KKEKALEELEEVEEN-IERLDLIIDEKRQQLERLRREREKaeryqaLLKEKREY--EGYELLKEKEALERQKEAIERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 189 EIEKIRPAFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIhQEEVKELMCQIEASAKE 268
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERS-IAEKERELEDAEERLAK 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 269 HETEINKLNELKENLVKQCEaSEKNIQEKYECELENLRKATSNANQDNQMCSLLFQEnTFVEQVvnEKVKHLEDTLKELE 348
Cdd:TIGR02169 327 LEAEIDKLLAEIEELEREIE-EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE-TRDELK--DYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 349 SqhsiLKDEVTYMNNLKLKLEMDAQHIKDEFfherEDLEFKINELLLAKEEQGCVIEKLKSELAGLNKQFCcTVEQHNKE 428
Cdd:TIGR02169 403 E----LKRELDRLQEELQRLSEELADLNAAI----AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLS-KYEQELYD 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 429 VQSLKEQHQKEISELNETfLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGK----- 503
Cdd:TIGR02169 474 LKEEYDRVEKELSKLQRE-LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNrlnnv 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 504 -------ISQEFESMKQQQAS------------------------------DVHELQQKLRTAFTE--KDAL----LETV 540
Cdd:TIGR02169 553 vveddavAKEAIELLKRRKAGratflplnkmrderrdlsilsedgvigfavDLVEFDPKYEPAFKYvfGDTLvvedIEAA 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 541 NHLQGENEKLLSQQELVPELENTIKNLEEKNGVYLLSLSQRDTmLKELEAKINSLTEEKDDFINKLKNSYEEMDNFHKKC 620
Cdd:TIGR02169 633 RRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGGILFSRSEPAE-LQRLRERLEGLKRELSSLQSELRRIENRLDELSQEL 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 621 EREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLY-EENNK 699
Cdd:TIGR02169 712 SDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEaRLSHS 791
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 700 LSSEKKQLSRDLEVFLSQkndviLKEHITELEKKLQLMVEERDNLNKLLENEQVQKLFVKTQLygflkdmgsevsedGEE 779
Cdd:TIGR02169 792 RIPEIQAELSKLEEEVSR-----IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQI--------------KSI 852
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 780 KDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIKCLQEesvvQCEELKSLLRDYEQEKVLLRKELEEIQSEKEA 859
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA----QLRELERKIEELEAQIEKKRKRLSELKAKLEA 928
|
....*..
gi 966982775 860 LQSDLLE 866
Cdd:TIGR02169 929 LEEELSE 935
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
691-1464 |
1.04e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 47.42 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 691 KSLYEENNKLSSEKKQLSRDLEvfLSQKNDVILKEHITELEKKLQLMVEERDNLNKLLENEqvqklfvktqlygflkdmg 770
Cdd:pfam15921 78 RVLEEYSHQVKDLQRRLNESNE--LHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRE------------------- 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 771 sevseDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEKEIkcLQEESVVQceELKSLLRDYEQEK------- 843
Cdd:pfam15921 137 -----SQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMM--LSHEGVLQ--EIRSILVDFEEASgkkiyeh 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 844 ------------VLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNlliQVEEVSQTcnkneiHNEKEKCSIKEHEN 911
Cdd:pfam15921 208 dsmstmhfrslgSAISKILRELDTEISYLKGRIFPVEDQLEALKSESQN---KIELLLQQ------HQDRIEQLISEHEV 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 912 LKPLLEQKESELRdtraelillkdSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRK 991
Cdd:pfam15921 279 EITGLTEKASSAR-----------SQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEEL 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 992 ETQTV--REELESLRSEKDQLSASMRDLiqaAESYKNLLLEYEKQSEQLDVEKERANNFEHH-------VEDLTRQLRNS 1062
Cdd:pfam15921 348 EKQLVlaNSELTEARTERDQFSQESGNL---DDQLQKLLADLHKREKELSLEKEQNKRLWDRdtgnsitIDHLRRELDDR 424
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1063 TLQCEKINS-----------DNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDK---ELEAEKLQKEQKIKEHATTVNE 1128
Cdd:pfam15921 425 NMEVQRLEAllkamksecqgQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKvveELTAKKMTLESSERTVSDLTAS 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1129 LEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEE 1208
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRT 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1209 ITSLQSSVQQYEeKNTKIKQLLVKTKKELADSKQAETDhlilqaslkgELEASQQQVEVYKIQLAEITSEKHKIHEHLKT 1288
Cdd:pfam15921 585 AGAMQVEKAQLE-KEINDRRLELQEFKILKDKKDAKIR----------ELEARVSDLELEKVKLVNAGSERLRAVKDIKQ 653
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1289 SAEQhqrtlsayrqrvtaLQEESRAAKAEQATVTSEFESYKvrvhnvlKQQKNKSmsqaetegakqerEHLEMLIDQLKI 1368
Cdd:pfam15921 654 ERDQ--------------LLNEVKTSRNELNSLSEDYEVLK-------RNFRNKS-------------EEMETTTNKLKM 699
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1369 KLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAE----------LREKLCSIQSENMMMKSEHTQtVSQLT 1438
Cdd:pfam15921 700 QLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQidalqskiqfLEEAMTNANKEKHFLKEEKNK-LSQEL 778
|
810 820
....*....|....*....|....*.
gi 966982775 1439 SQNEVLRNSFRDQVRHLQEEHRKTVE 1464
Cdd:pfam15921 779 STVATEKNKMAGELEVLRSQERRLKE 804
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1079-1278 |
1.25e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1079 RIETLQSNAKLLEvQILEV-QRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDA 1157
Cdd:COG4913 243 ALEDAREQIELLE-PIRELaERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1158 QQttlmnmEIADYERlmkelnQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL 1237
Cdd:COG4913 322 RE------ELDELEA------QIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 966982775 1238 ADSKQAETDHLILQASLKGELEASQQQVevyKIQLAEITSE 1278
Cdd:COG4913 390 AALLEALEEELEALEEALAEAEAALRDL---RRELRELEAE 427
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
433-1157 |
1.41e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 433 KEQHQKEISELnETFLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESL-REIMEILQTELGESAGKISQeFESM 511
Cdd:TIGR02169 232 KEALERQKEAI-ERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIAS-LERS 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 512 KQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEkllSQQELVPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAK 591
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE---EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 592 INSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEK 671
Cdd:TIGR02169 387 LKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 672 LMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQL------SRDLEVFLSQKNDVIL----------KEHITELE---- 731
Cdd:TIGR02169 467 YEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASeervrgGRAVEEVLKASIQGVHgtvaqlgsvgERYATAIEvaag 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 732 KKLQLMVEERDN---------------------LNKLLENEQVQKLFVKTQLYGFLKD---------------------- 768
Cdd:TIGR02169 547 NRLNNVVVEDDAvakeaiellkrrkagratflpLNKMRDERRDLSILSEDGVIGFAVDlvefdpkyepafkyvfgdtlvv 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 769 ---------MGSE--VSEDGE--EKDVVNILQAVSESLAKINE-EKCNLVFQCDKKVFELEKEIKCLQEESvvqcEELKS 834
Cdd:TIGR02169 627 edieaarrlMGKYrmVTLEGElfEKSGAMTGGSRAPRGGILFSrSEPAELQRLRERLEGLKRELSSLQSEL----RRIEN 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 835 LLRDYEQEKVLLRKELEEIQSEKEALQSDLlemknANEKTRLENQNLLIQVEEVSQTCNKNEI-HNEKEKCSIKEH-ENL 912
Cdd:TIGR02169 703 RLDELSQELSDASRKIGEIEKEIEQLEQEE-----EKLKERLEELEEDLSSLEQEIENVKSELkELEARIEELEEDlHKL 777
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 913 KPLLEQKESELRDTR-----AELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELD 987
Cdd:TIGR02169 778 EEALNDLEARLSHSRipeiqAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIE 857
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 988 SSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRNSTLQce 1067
Cdd:TIGR02169 858 NLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK---RKRLSELKAKLEALEEE-- 932
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1068 kiNSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKeLEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTM 1147
Cdd:TIGR02169 933 --LSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA-LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009
|
810
....*....|
gi 966982775 1148 QELELVKKDA 1157
Cdd:TIGR02169 1010 EEYEKKKREV 1019
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1106-1483 |
1.41e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1106 KELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQqttlmnmeIADYERLMKELNQKLSNKN 1185
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQ--------LLPLYQELEALEAELAELP 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1186 NKIEDLEQEIkiqkQKQETLQEEITSLQSSVQQYEEK-NTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQ 1264
Cdd:COG4717 146 ERLEELEERL----EELRELEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1265 VEVYKIQLAEITSEKHKIHEHLKTSAEQHQR-------TLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVHNVLK 1337
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1338 QQKNKSMSQAETEGAKQERehLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQET------------ 1405
Cdd:COG4717 302 KEAEELQALPALEELEEEE--LEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEEleqeiaallaea 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1406 -VSKEAELREKLcSIQSENMMMKSEHTQTVSQLTSQNEVLRNSFRD-----------QVRHLQEEHRKTVETLQQQLSRV 1473
Cdd:COG4717 380 gVEDEEELRAAL-EQAEEYQELKEELEELEEQLEELLGELEELLEAldeeeleeeleELEEELEELEEELEELREELAEL 458
|
410
....*....|
gi 966982775 1474 EAQLFQLKNE 1483
Cdd:COG4717 459 EAELEQLEED 468
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1166-1355 |
1.60e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 1.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1166 EIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQssvQQYEEKNTKIKQLLVKTKKELADSKQAEt 1245
Cdd:COG3883 31 ELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAE---AEIEERREELGERARALYRSGGSVSYLD- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1246 dhLILQAS----LKGELEASQQQVEVYKIQLAEITSEKHKIhEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATV 1321
Cdd:COG3883 107 --VLLGSEsfsdFLDRLSALSKIADADADLLEELKADKAEL-EAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEAL 183
|
170 180 190
....*....|....*....|....*....|....
gi 966982775 1322 TSEFESYKVRVHNVLKQQKNKSMSQAETEGAKQE 1355
Cdd:COG3883 184 LAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
100-735 |
1.62e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 46.55 E-value: 1.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 100 KENIKMKQEVEDSVTKMEDAHKELEQSHINYVKEIENLKNELMAVRAKYSEdkanLQKELEEAMNKQLELSEQLKFQNNS 179
Cdd:TIGR04523 113 KNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYND----LKKQKEELENELNLLEKEKLNIQKN 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 180 EDNVKKLQEEIEKIRPAFEEQIlYLQKQLDATTDEKKETVTQLQNIIEANSQHYQK---NINSLQEELLQLKAIHQEEVK 256
Cdd:TIGR04523 189 IDKIKNKLLKLELLLSNLKKKI-QKNKSLESQISELKKQNNQLKDNIEKKQQEINEkttEISNTQTQLNQLKDEQNKIKK 267
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 257 ELmcqiEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELENLRKATSNANQDNQMCSLLFQENTFVEQVVNEK 336
Cdd:TIGR04523 268 QL----SEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQ 343
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 337 VKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFH---EREDLEFKINELLLAKEEQGCVIEKLKSELAG 413
Cdd:TIGR04523 344 ISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNlesQINDLESKIQNQEKLNQQKDEQIKKLQQEKEL 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 414 LNKQ---FCCTVEQHNKEVQSLKEQ-HQKEISELNETFLSDSEKEKL-TLMFEIQGLKEQCDNLQQEKQEAILNYESLRE 488
Cdd:TIGR04523 424 LEKEierLKETIIKNNSEIKDLTNQdSVKELIIKNLDNTRESLETQLkVLSRSINKIKQNLEQKQKELKSKEKELKKLNE 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 489 IMEILQTELGESAGKISqEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVpELENTIKNLE 568
Cdd:TIGR04523 504 EKKELEEKVKDLTKKIS-SLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIE-ELKQTQKSLK 581
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 569 EKNgvyllslSQRDTMLKELEAKINSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKV 648
Cdd:TIGR04523 582 KKQ-------EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 649 NELTGGLEETLKEKDQNDQKLEKLMVQMKV-LSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVILKEHI 727
Cdd:TIGR04523 655 KEIRNKWPEIIKKIKESKTKIDDIIELMKDwLKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENII 734
|
....*...
gi 966982775 728 TELEKKLQ 735
Cdd:TIGR04523 735 KNFNKKFD 742
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1106-1303 |
1.65e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1106 KELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKtMQELELVKKDAQQTTlmnmeiADYERLMKELnQKLSNKN 1185
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQR-LAEYSWDEIDVASAE------REIAELEAEL-ERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1186 NKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLL--VKTKKELADSKQAETDHLILQASLKGELEAsqq 1263
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdeLQDRLEAAEDLARLELRALLEERFAAALGD--- 761
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 966982775 1264 qvEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQR 1303
Cdd:COG4913 762 --AVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
739-1312 |
2.30e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 2.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 739 EERDNLNKLLENEQVQKlFVKTQLYGFLKDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKKVFELEK-- 816
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRK-FEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKad 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 817 EIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTcnkNE 896
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA---DE 1395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 897 IHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIK 976
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 977 LVAVKAKKELDSSRKETQTVREELESLR--SEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDV--EKERANNFEHHV 1052
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKkaAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKaeEKKKADELKKAE 1555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1053 EDLTRQLRNSTLQCEKINSDNEDLLARIETLQsnaKLLEVQILEVQRAKAMvDKELEAEKLQKEQKIKEHATTVNELEEL 1132
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK---KAEEARIEEVMKLYEE-EKKMKAEEAKKAEEAKIKAEELKKAEEE 1631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1133 QVQLQKEKKQLQKTMQELELVKKDAQQTTLMNmeiadyerlmKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEitsl 1212
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKA----------AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE---- 1697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1213 qssvQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQ 1292
Cdd:PTZ00121 1698 ----AEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEI 1773
|
570 580
....*....|....*....|
gi 966982775 1293 HQRTLSAYRQRVTALQEESR 1312
Cdd:PTZ00121 1774 RKEKEAVIEEELDEEDEKRR 1793
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1003-1255 |
2.77e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.78 E-value: 2.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1003 LRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKEraNNFEHHVE---DLTRQLRNSTLQCEKINSDNEDLLAR 1079
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQ--NKYDELVEeakTIKAEIEELTDELLNLVMDIEDPSAA 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1080 IETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQkeQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELvkkdaqq 1159
Cdd:PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCT--QQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEE------- 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1160 ttLMNmEIADYERLMKELNQKLSNKNNKIEDLEQEIKiqkqkqeTLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELAD 1239
Cdd:PHA02562 328 --IMD-EFNEQSKKLLELKNKISTNKQSLITLVDKAK-------KVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSE 397
|
250
....*....|....*.
gi 966982775 1240 SKQAETDHLILQASLK 1255
Cdd:PHA02562 398 LVKEKYHRGIVTDLLK 413
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1162-1367 |
2.84e-04 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 45.39 E-value: 2.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1162 LMNMEIADYERLMKELNQK----LSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKEL 1237
Cdd:PHA02562 192 HIQQQIKTYNKNIEEQRKKngenIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1238 AD----------------SKQAETDHLILQASLKGELEASQQQVEVYKIQLAEITSEKHKIHE------HLKTSAEQHQR 1295
Cdd:PHA02562 272 EQfqkvikmyekggvcptCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEqskkllELKNKISTNKQ 351
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966982775 1296 TLSAYRQRVTALQEESRAAKAEQATVTSEFESYkvrVHNVLKQQKNKSmsqaeteGAKQEREHLEMLIDQLK 1367
Cdd:PHA02562 352 SLITLVDKAKKVKAAIEELQAEFVDNAEELAKL---QDELDKIVKTKS-------ELVKEKYHRGIVTDLLK 413
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
131-479 |
2.93e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 131 VKEIENLKNELMAVRAKYSEDKANLQKELEEAMNKQLELSEQLKfqnNSEDNVKKLQEEIEKIRPAfeeqilylQKQLDA 210
Cdd:TIGR02169 697 LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLE---ELEEDLSSLEQEIENVKSE--------LKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 211 TTDEKKETVTQLQNIIEANSQHY-QKNINSLQEELLQLKAIHQEevkelmcqIEASAKEHETEINKLNELKENLvkqcea 289
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARLsHSRIPEIQAELSKLEEEVSR--------IEARLREIEQKLNRLTLEKEYL------ 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 290 sEKNIQekyecELENLRKATSnaNQDNQMCSLLFQENTFVEQvVNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLE 369
Cdd:TIGR02169 832 -EKEIQ-----ELQEQRIDLK--EQIKSIEKEIENLNGKKEE-LEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 370 MDAQHIKDEFFHEREDLEfKINELLLAKEEQGCVIEKLKSEL---------AGLNKQFCCTVEQhnkEVQSLKEQHQKEI 440
Cdd:TIGR02169 903 RKIEELEAQIEKKRKRLS-ELKAKLEALEEELSEIEDPKGEDeeipeeelsLEDVQAELQRVEE---EIRALEPVNMLAI 978
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 966982775 441 SELNETF--LSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEA 479
Cdd:TIGR02169 979 QEYEEVLkrLDELKEKRAKLEEERKAILERIEEYEKKKREV 1019
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1127-1476 |
3.26e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.72 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1127 NELEELQVQLQKEKKQLQKT---MQELELVKKDAQQTTLMNMEIA---DYERLMKELNQKLSNKNNKIEDLEQEIKIQKQ 1200
Cdd:PRK04863 786 KRIEQLRAEREELAERYATLsfdVQKLQRLHQAFSRFIGSHLAVAfeaDPEAELRQLNRRRVELERALADHESQEQQQRS 865
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1201 KQETLQEEITSLQSSVQQyeekntkIKQLLVKTKKELADSKQAEtdhliLQASLKGELEASQQQVEVYKI--QLAEITSE 1278
Cdd:PRK04863 866 QLEQAKEGLSALNRLLPR-------LNLLADETLADRVEEIREQ-----LDEAEEAKRFVQQHGNALAQLepIVSVLQSD 933
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1279 KHKiHEHLKTSAEQHQRTLSAYRQRVTALQE--ESRAAKA-EQAtvtsefesykvrvhnvlkqQKNKSMSQAETEGAKQE 1355
Cdd:PRK04863 934 PEQ-FEQLKQDYQQAQQTQRDAKQQAFALTEvvQRRAHFSyEDA-------------------AEMLAKNSDLNEKLRQR 993
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1356 REHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQE----TVSKEAELREKLCSIQSENMMMKSEHT 1431
Cdd:PRK04863 994 LEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQElqdlGVPADSGAEERARARRDELHARLSANR 1073
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 966982775 1432 QTVSQLTSQnevlRNSFRDQVRHLQEEHRKTVETLQQQLSRVEAQ 1476
Cdd:PRK04863 1074 SRRNQLEKQ----LTFCEAEMDNLTKKLRKLERDYHEMREQVVNA 1114
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
1111-1324 |
3.45e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 45.30 E-value: 3.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1111 EKLQKEQKIkehattvnELEELQVQLQKEK-----KQLQKTMQELELVKKDAQ-----QTTLMNMEIADYERLMKELNQK 1180
Cdd:PRK05771 23 EALHELGVV--------HIEDLKEELSNERlrklrSLLTKLSEALDKLRSYLPklnplREEKKKVSVKSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1181 LSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQ-----SSVQQYEEKNTKIKQLLVKTKKELADSKQAETD--HLILQAS 1253
Cdd:PRK05771 95 LEKIEKEIKELEEEISELENEIKELEQEIERLEpwgnfDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDveNVEYIST 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1254 LKG-------------------------------ELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQ 1302
Cdd:PRK05771 175 DKGyvyvvvvvlkelsdeveeelkklgferleleEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYE 254
|
250 260
....*....|....*....|..
gi 966982775 1303 rvtALQEESRAAKAEQATVTSE 1324
Cdd:PRK05771 255 ---YLEIELERAEALSKFLKTD 273
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
101-1187 |
4.05e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.43 E-value: 4.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 101 ENIKMKQEVEDSVTKMEDAHKELEQSHINYVK----EIENLKNELMAV-----RAKYSEDKANLQKELEEAMNKQLELSE 171
Cdd:TIGR01612 690 DNTEDKAKLDDLKSKIDKEYDKIQNMETATVElhlsNIENKKNELLDIiveikKHIHGEINKDLNKILEDFKNKEKELSN 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 172 QLKFQNNSEDNVKKLQEEIEKIRPAFEEQIL------------YLQ-----KQLDATTDEKKETVTQLQNIIEAN----- 229
Cdd:TIGR01612 770 KINDYAKEKDELNKYKSKISEIKNHYNDQINidnikdedakqnYDKskeyiKTISIKEDEIFKIINEMKFMKDDFlnkvd 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 230 -----SQHYQKNINSLQEELLQLKAIHQEEV---------------KELMCQIEASAKEHETEINKLNELKENLvKQCEA 289
Cdd:TIGR01612 850 kfinfENNCKEKIDSEHEQFAELTNKIKAEIsddklndyekkfndsKSLINEINKSIEEEYQNINTLKKVDEYI-KICEN 928
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 290 SEKNIQEKYECELENLRKATSNANQDNQMCSLLFQENTFVEQVVNEKVKHLEDTLKE--LESQHSILKDEVTYMNNLKLK 367
Cdd:TIGR01612 929 TKESIEKFHNKQNILKEILNKNIDTIKESNLIEKSYKDKFDNTLIDKINELDKAFKDasLNDYEAKNNELIKYFNDLKAN 1008
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 368 LEMDAQHIKDEFFHEREDLEFKINELLLAKEEQGCVIE-----KLKSELAGLNKQFCCTVEQHNKEVQSLKEQHQKEISE 442
Cdd:TIGR01612 1009 LGKNKENMLYHQFDEKEKATNDIEQKIEDANKNIPNIEiaihtSIYNIIDEIEKEIGKNIELLNKEILEEAEINITNFNE 1088
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 443 LNE-----TFLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFE-SMKQQQA 516
Cdd:TIGR01612 1089 IKEklkhyNFDDFGKEENIKYADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENYIDEIKAQINDLEDVADkAISNDDP 1168
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 517 SDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTikNLEEKNGVYLLSLSQRD-------TMLKELE 589
Cdd:TIGR01612 1169 EEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGI--NLSYGKNLGKLFLEKIDeekkkseHMIKAME 1246
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 590 AKINSLTEEKDDF----------------INKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQYNSElEQKVNELTG 653
Cdd:TIGR01612 1247 AYIEDLDEIKEKSpeienemgiemdikaeMETFNISHDDDKDHHIISKKHDENISDIREKSLKIIEDFSE-ESDINDIKK 1325
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 654 GLEETLKEKDQNDQKLEKLMVQMK------VLSEDKEVLS--AEVKSLYEENNKlsSEKKQLSRDLEVFLSQKNDVILKE 725
Cdd:TIGR01612 1326 ELQKNLLDAQKHNSDINLYLNEIAniynilKLNKIKKIIDevKEYTKEIEENNK--NIKDELDKSEKLIKKIKDDINLEE 1403
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 726 hiteLEKKLQLMVEERDnLNKLLENEQVQKLFV---KTQLYGFLKDmgsevsEDGEEKDVV----NILQAVSESLAKINE 798
Cdd:TIGR01612 1404 ----CKSKIESTLDDKD-IDECIKKIKELKNHIlseESNIDTYFKN------ADENNENVLllfkNIEMADNKSQHILKI 1472
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 799 EKCNLVFQCDKKVFELEKEI------KCLQEESVVQCEELKSLLRDYEQE-KVLLRKELEeiqsekealqsdlLEMKNAN 871
Cdd:TIGR01612 1473 KKDNATNDHDFNINELKEHIdkskgcKDEADKNAKAIEKNKELFEQYKKDvTELLNKYSA-------------LAIKNKF 1539
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 872 EKTRLENQnllIQVEEVSQTCNKNEIHNEKEKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAkspSVQNDLLssv 951
Cdd:TIGR01612 1540 AKTKKDSE---IIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDAAKNDKSNKAAIDIQLSLE---NFENKFL--- 1610
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 952 KELEEKLENLEKEGKEKEEKINKIKLVAVKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQA---AESYKNLL 1028
Cdd:TIGR01612 1611 KISDIKKKINDCLKETESIEKKISSFSIDSQDTELKENGDNLNSLQEFLESLKDQKKNIEDKKKELDELdseIEKIEIDV 1690
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1029 LEYEKQSEQLDVEK--ERANNFEHHVEDlTRQLRNSTLQCEKINSDNEDLlariETLQSNAKLLEVQI-LEVQRAKAMVD 1105
Cdd:TIGR01612 1691 DQHKKNYEIGIIEKikEIAIANKEEIES-IKELIEPTIENLISSFNTNDL----EGIDPNEKLEEYNTeIGDIYEEFIEL 1765
|
1130 1140 1150 1160 1170 1180 1190 1200
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1106 KELEAEKLQKeqkIKEHATTVNELEELQVQLQKEkkqlqkTMQELELVKKdaQQTTLMNMEIADYERLMKELNQKLSNKN 1185
Cdd:TIGR01612 1766 YNIIAGCLET---VSKEPITYDEIKNTRINAQNE------FLKIIEIEKK--SKSYLDDIEAKEFDRIINHFKKKLDHVN 1834
|
..
gi 966982775 1186 NK 1187
Cdd:TIGR01612 1835 DK 1836
|
|
| CC149 |
pfam09789 |
Coiled-coil domain-containing protein 149-A; Members of this family have been annotated as ... |
983-1219 |
4.12e-04 |
|
Coiled-coil domain-containing protein 149-A; Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Pssm-ID: 462902 [Multi-domain] Cd Length: 314 Bit Score: 44.24 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 983 KKELDSSRKETQTVREELESLRSEKDQLSAsmrdliqAAESYKNLLLEYEKQSEQLDVEKERANNFEHHVEDLTRQLRNS 1062
Cdd:pfam09789 1 KRKLQSKVEALLILSKELEKCRQERDQYKL-------MAEQLQERYQGLKKQLRELKAGNNDFKPDDREQVNLIQLLRDS 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1063 TLQCEKINSDNEDLLARIETLQSNAKLLEVQIlEVQRAKAMVDKELEAEKLQKEQKIKehatTVNELEELQVQLQKEKKQ 1142
Cdd:pfam09789 74 REQNKCLRLEVEELRQKLNEAQGDIKLLREQI-ARQRLGGPDEGSISTRHFPLHEREE----LVKQLEKLRKKCQQLERD 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1143 LQKTMQELE--LVKKDAQQTTlmnmeiadYERLMKELNQKLSNKNNKIEDLEQ---EIKIQKQKQETLQEEITSLQSSVQ 1217
Cdd:pfam09789 149 LQSVLDEKEelETERDAYKCK--------AHRLNHELNYILGGDESRIVDIDAlimENRYLQERLKQLEEEKELAKQTLS 220
|
..
gi 966982775 1218 QY 1219
Cdd:pfam09789 221 KY 222
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
87-350 |
4.12e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.45 E-value: 4.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 87 EKAETEQQCLSLKKENIkmkqeVEDSVTKMEDAHKELEQSHINyVKEIENLKNELMAVRAKYSEDKANLQKeleeamnkq 166
Cdd:COG5022 853 RSLKAKKRFSLLKKETI-----YLQSAQRVELAERQLQELKID-VKSISSLKLVNLELESEIIELKKSLSS--------- 917
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 167 lELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEK-KETVTQLQNIIEANSQHYQKNINSLqEELL 245
Cdd:COG5022 918 -DLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKlKETSEEYEDLLKKSTILVREGNKAN-SELK 995
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 246 QLKAIHQEEVKELMcQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELENLRKATSNANQDNQMCSLLFQE 325
Cdd:COG5022 996 NFKKELAELSKQYG-ALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQLQARYKALKLRRE 1074
|
250 260
....*....|....*....|....*...
gi 966982775 326 NTFVEQV---VNEKVKHLEDTLKELESQ 350
Cdd:COG5022 1075 NSLLDDKqlyQLESTENLLKTINVKDLE 1102
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
994-1151 |
4.41e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 4.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 994 QTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEKERAnnfEHHVEDLTRQLRNSTLQCEKINSDN 1073
Cdd:COG1579 13 QELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRL---ELEIEEVEARIKKYEEQLGNVRNNK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1074 E--DLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELE 1151
Cdd:COG1579 90 EyeALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELA 169
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
979-1366 |
4.54e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.33 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 979 AVKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDL---IQAAESYKNLLLEYEKQSEQLDvekeranNFEHHVEDL 1055
Cdd:COG3096 287 ALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLeqdYQAASDHLNLVQTALRQQEKIE-------RYQEDLEEL 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1056 TRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAkamVDkELEAEKLQKEQKIK--EHATTVNELEEL- 1132
Cdd:COG3096 360 TERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQA---LD-VQQTRAIQYQQAVQalEKARALCGLPDLt 435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1133 -------QVQLQKEKKQLQKTMQELElvkkdaQQTTLMNMEIADYERLMkELNQKLSNKNNK-------IEDLEQ--EIK 1196
Cdd:COG3096 436 penaedyLAAFRAKEQQATEEVLELE------QKLSVADAARRQFEKAY-ELVCKIAGEVERsqawqtaRELLRRyrSQQ 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1197 IQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETdhliLQASLKGELEASQQQVEVYKIQLAEIT 1276
Cdd:COG3096 509 ALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELEE----LLAELEAQLEELEEQAAEAVEQRSELR 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1277 SEKHKIHEHLKTSAEQHQRTLSAyRQRVTALQEESRAAKAEQATVTSEFEsykvrvhNVLKQQKNKSMSQAETEgakQER 1356
Cdd:COG3096 585 QQLEQLRARIKELAARAPAWLAA-QDALERLREQSGEALADSQEVTAAMQ-------QLLEREREATVERDELA---ARK 653
|
410
....*....|
gi 966982775 1357 EHLEMLIDQL 1366
Cdd:COG3096 654 QALESQIERL 663
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
415-817 |
5.05e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.07 E-value: 5.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 415 NKQFCCTVEQHNKEVQSLKEQHQKEISELNETFLS-DSEKEKLTLMFEIQglkeqcdNLQQEKQEAILNYESlreimEIL 493
Cdd:COG5022 780 GFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSyLACIIKLQKTIKRE-------KKLRETEEVEFSLKA-----EVL 847
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 494 QTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQqelVPELENTIKNLEEKNgv 573
Cdd:COG5022 848 IQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESE---IIELKKSLSSDLIEN-- 922
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 574 yLLSLSQRDTMLKELEAKINSLTE-EKDDFINKLKNSY-EEMDNFHKKCEREERLILELGKKVEQTTQYNSELEQKVNEL 651
Cdd:COG5022 923 -LEFKTELIARLKKLLNNIDLEEGpSIEYVKLPELNKLhEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKEL 1001
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 652 TGGLEEtlKEKDQNDQKleklmvqmkvLSEDKEVLSAEVKSLYeenNKLSSEKKQLSRDLEVfLSQKNDVILKEHITELE 731
Cdd:COG5022 1002 AELSKQ--YGALQESTK----------QLKELPVEVAELQSAS---KIISSESTELSILKPL-QKLKGLLLLENNQLQAR 1065
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 732 -KKLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKdMGSEVSEDGEEKDVVNILQAVSESLAKINEEKCNLVFQCDKK 810
Cdd:COG5022 1066 yKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLE-VTNRNLVKPANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEP 1144
|
....*..
gi 966982775 811 VFELEKE 817
Cdd:COG5022 1145 VFQKLSV 1151
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
603-1346 |
7.78e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 7.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 603 INKLKNSYEEMDNFHKKCEREERLILELGKKVEQTT-QYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSE 681
Cdd:pfam12128 250 FNTLESAELRLSHLHFGYKSDETLIASRQEERQETSaELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALED 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 682 DKEV-LSAEVKSLYEENNKL---SSEKKQLSRDLEVFLSQKNDVILKEHITELEKKLQLmVEERDNLNKLLENEQVQKlf 757
Cdd:pfam12128 330 QHGAfLDADIETAAADQEQLpswQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQN-NRDIAGIKDKLAKIREAR-- 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 758 vktqlygflkDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKcnlvfqcdkKVFELEKEIKCLQEESVVQCEELKSLLR 837
Cdd:pfam12128 407 ----------DRQLAVAEDDLQALESELREQLEAGKLEFNEEE---------YRLKSRLGELKLRLNQATATPELLLQLE 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 838 DYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEH-ENLKPLL 916
Cdd:pfam12128 468 NFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTLLHFlRKEAPDW 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 917 EQKESELRDTraELILLKD---SLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINkiklvAVKAKKELDSSRKET 993
Cdd:pfam12128 548 EQSIGKVISP--ELLHRTDldpEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEEELRER-----LDKAEEALQSAREKQ 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 994 QTVREELESLRSEKDQLSASMRDLIQAAESYKNLL--LEYEKQSEQLDVEKERANNFEHHVEDLT------RQLRNStLQ 1065
Cdd:pfam12128 621 AAAEEQLVQANGELEKASREETFARTALKNARLDLrrLFDEKQSEKDKKNKALAERKDSANERLNsleaqlKQLDKK-HQ 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1066 CEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQK 1145
Cdd:pfam12128 700 AWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRT 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1146 TMQELELVKKDAQqttlmnmEIADYERLMKE--------LNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQ 1217
Cdd:pfam12128 780 LERKIERIAVRRQ-------EVLRYFDWYQEtwlqrrprLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASE 852
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1218 QYEEKNTKIKQLLVKTKKELADSKQAETDhlilqASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRtl 1297
Cdd:pfam12128 853 KQQVRLSENLRGLRCEMSKLATLKEDANS-----EQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKNVIADHSG-- 925
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 966982775 1298 SAYRQRVTALQEESRAAKAEQATVTSEFESYKVR--VHNVLKQQKNKSMSQ 1346
Cdd:pfam12128 926 SGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLeqWFDVRVPQSIMVLRE 976
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
1042-1627 |
8.83e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 44.26 E-value: 8.83e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1042 KERANNFEHHVEDLTRQLRNSTLQCEKINSDNE--DLLARIETLQSNAKLLEVQI--LEVQRAKAMVDKELEAEKL---- 1113
Cdd:PRK02224 168 RERASDARLGVERVLSDQRGSLDQLKAQIEEKEekDLHERLNGLESELAELDEEIerYEEQREQARETRDEADEVLeehe 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1114 QKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKE-LNQKLSNKNNKIEDLE 1192
Cdd:PRK02224 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEaVEARREELEDRDEELR 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1193 QEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQASLKGELEASQQQVEVYKIQL 1272
Cdd:PRK02224 328 DRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1273 -------AEITSEKHKIHEHLkTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEfesykvRVHNVLKQQKNKSMS 1345
Cdd:PRK02224 408 gnaedflEELREERDELRERE-AELEATLRTARERVEEAEALLEAGKCPECGQPVEGSP------HVETIEEDRERVEEL 480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1346 QAETEGAKQEREHLEMLIDQLK--IKLQDSQNNLQMNVSELQTLQSEHDTLLErhnkmlqETVSKEAELREKlcsiqsen 1423
Cdd:PRK02224 481 EAELEDLEEEVEEVEERLERAEdlVEAEDRIERLEERREDLEELIAERRETIE-------EKRERAEELRER-------- 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1424 mmmksehtqtVSQLTSQNEVLRNSFRDQvRHLQEEHRKTVETLQQQLSRVEAQLFQLKNEPTTRSPVSS-QQSLKNLRER 1502
Cdd:PRK02224 546 ----------AAELEAEAEEKREAAAEA-EEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADaEDEIERLREK 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1503 RntdlplldmhtvtrEEGEGMETTDTESVSSASTYTQSLEQLLNspetkfepplwhaEFTKEELVQKLSSTTKSADHLNG 1582
Cdd:PRK02224 615 R--------------EALAELNDERRERLAEKRERKRELEAEFD-------------EARIEEAREDKERAEEYLEQVEE 667
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 966982775 1583 LLRETEATNAILMEQIKLLKSEIRRLERNQEREKSAAN-LEYLKNV 1627
Cdd:PRK02224 668 KLDELREERDDLQAEIGAVENELEELEELRERREALENrVEALEAL 713
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
335-532 |
8.87e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 8.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 335 EKVKHLEDTLKELESQHSILKDEVTymnnlKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEqgcvIEKLKSELAGL 414
Cdd:COG4913 610 AKLAALEAELAELEEELAEAEERLE-----ALEAELDALQERREALQRLAEYSWDEIDVASAERE----IAELEAELERL 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 415 nkqfcctvEQHNKEVQSLKEQHQKEISELNETflsdsEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQ 494
Cdd:COG4913 681 --------DASSDDLAALEEQLEELEAELEEL-----EEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL 747
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 966982775 495 TELGE----------SAGKISQEFESMKQQQASDVHELQQKLRTAFTE 532
Cdd:COG4913 748 RALLEerfaaalgdaVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
462-756 |
1.09e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.77 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 462 IQGLKEQCDNLQQEKQEAiLNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETV- 540
Cdd:COG1196 195 LGELERQLEPLERQAEKA-ERYRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELr 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 541 NHLQGENEKLLSQQELVPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKNSYEEMDNFHKKC 620
Cdd:COG1196 274 LELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 621 EREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKL 700
Cdd:COG1196 354 EEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAEL 433
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 966982775 701 SSEKKQLSRDLEVFLSQKNDVI-----LKEHITELEKKLQLMVEERDNLNKLLENEQVQKL 756
Cdd:COG1196 434 EEEEEEEEEALEEAAEEEAELEeeeeaLLELLAELLEEAALLEAALAELLEELAEAAARLL 494
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1080-1328 |
1.18e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1080 IETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQ 1159
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYR 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1160 T----TLMNM-----EIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKntkikqll 1230
Cdd:COG3883 98 SggsvSYLDVllgseSFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA-------- 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1231 vktkKELADSKQAETDHLIlqASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEE 1310
Cdd:COG3883 170 ----KAELEAQQAEQEALL--AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 243
|
250
....*....|....*...
gi 966982775 1311 SRAAKAEQATVTSEFESY 1328
Cdd:COG3883 244 ASAAGAGAAGAAGAAAGS 261
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
978-1229 |
1.55e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 43.19 E-value: 1.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 978 VAVKAKKELDSSRKETQtvREELESLRSEKDQLSAS-MRDLiqaaesyKNLLLEYEKQSEQLDVEKERANNFEHHVEDLT 1056
Cdd:pfam17380 342 MAMERERELERIRQEER--KRELERIRQEEIAMEISrMREL-------ERLQMERQQKNERVRQELEAARKVKILEEERQ 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1057 RQLRNSTLQCEKINSDnedllarietlQSNAKLLEVQILEVQRAKAMvdKELEAEKLQKEQKIKEhaTTVNELEELQVQL 1136
Cdd:pfam17380 413 RKIQQQKVEMEQIRAE-----------QEEARQREVRRLEEERAREM--ERVRLEEQERQQQVER--LRQQEEERKRKKL 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1137 QKEKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQ-EEITSLQSS 1215
Cdd:pfam17380 478 ELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEmEERRRIQEQ 557
|
250
....*....|....
gi 966982775 1216 VQQYEEKNTKIKQL 1229
Cdd:pfam17380 558 MRKATEERSRLEAM 571
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1282-1483 |
1.62e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1282 IHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEqatvtseFESYKVRvHNVLKQQKNKSMSQAETEGAKQEREHLEM 1361
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAA-------LEEFRQK-NGLVDLSEEAKLLLQQLSELESQLAEARA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1362 LIDQLKIKLQDSQNNLQMNVSELQTLQSehDTLLERHNKMLQETVSKEAELREKLcsiqsenmmmKSEHtQTVSQLTSQN 1441
Cdd:COG3206 234 ELAEAEARLAALRAQLGSGPDALPELLQ--SPVIQQLRAQLAELEAELAELSARY----------TPNH-PDVIALRAQI 300
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 966982775 1442 EVLRNSFRDQVRHLQEEHRKTVETLQQQLSRVEAQLFQLKNE 1483
Cdd:COG3206 301 AALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR 342
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
75-901 |
1.71e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 75 KALTERLDAILLEKAETEQQCLSLKK--ENIKMKQEVE--DSVTKMEDAHKELEQSHINYVKEIENLKNELMAVRAKYSE 150
Cdd:PTZ00121 1097 FGKAEEAKKTETGKAEEARKAEEAKKkaEDARKAEEARkaEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAK 1176
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 151 DKANLQKELEEAMNKQLELSEQLKFQNNSE--DNVKKLQE--------EIEKIRPAFEEQilylQKQLDATTDEKKETVT 220
Cdd:PTZ00121 1177 KAEAARKAEEVRKAEELRKAEDARKAEAARkaEEERKAEEarkaedakKAEAVKKAEEAK----KDAEEAKKAEEERNNE 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 221 QLQNIIEANSQHYQKNINSLQEEllqlKAIHQEEVKELMCQIEASAKEHETEINKLNELKENLVKQCEASE-KNIQEKYE 299
Cdd:PTZ00121 1253 EIRKFEEARMAHFARRQAAIKAE----EARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEaKKKAEEAK 1328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 300 CELENLRKATSNANQDNQMCSLLFQENTFVEQVVNEKVKHLEDTLKELESQHSILK---DEVTYMNNLKLKLEMDAQhiK 376
Cdd:PTZ00121 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKkkaEEKKKADEAKKKAEEDKK--K 1406
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 377 DEFFHEREDLEFKINELLLAKEEQGCVIE-KLKSELAGLNKQFCCTVEQHNKEVQSLKEQHQKEiselnetfLSDSEKEK 455
Cdd:PTZ00121 1407 ADELKKAAAAKKKADEAKKKAEEKKKADEaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK--------KADEAKKK 1478
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 456 LTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDA 535
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 536 LLETVNHLQgENEKLLSQQELVPELENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKNSYEEMDN 615
Cdd:PTZ00121 1559 KAEEKKKAE-EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 616 FHKKCEREERLILELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLM--------VQMKVLSEDKEVLS 687
Cdd:PTZ00121 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeaeeakkAEELKKKEAEEKKK 1717
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 688 AEVKSLYEENNKLSSE--KKQLSRDLEVFLSQKNDVILKEHITELEKKLQLMVEERDNLNKLLENEQVQKlfvktqlygf 765
Cdd:PTZ00121 1718 AEELKKAEEENKIKAEeaKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE---------- 1787
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 766 lKDMGSEVSEDGEEKDVVNILQAVSESlakinEEKCNLVFQCDKKVFELE-KEIKCLQEESVVQCEELKSLLRDYEQEKV 844
Cdd:PTZ00121 1788 -EDEKRRMEVDKKIKDIFDNFANIIEG-----GKEGNLVINDSKEMEDSAiKEVADSKNMQLEEADAFEKHKFNKNNENG 1861
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 966982775 845 LLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTCNKNEIHNEK 901
Cdd:PTZ00121 1862 EDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREIPNNNMAGKNNDIIDDK 1918
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
96-566 |
1.90e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 1.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 96 LSLKKENIKMKQEVEDSVTKMEDAHKELEQSHINYVKEIENLKNELMAVRAKYSEDKANLQKELEEAMNKQLELSEQLKF 175
Cdd:TIGR04523 203 LSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKK 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 176 QNNSEDNVKKLQEEIEKIRPAFEEQILylqKQLDATTDEKKETVTQLQNIIEANsqhyQKNINSLQEELLQLKaihqEEV 255
Cdd:TIGR04523 283 IKELEKQLNQLKSEISDLNNQKEQDWN---KELKSELKNQEKKLEEIQNQISQN----NKIISQLNEQISQLK----KEL 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 256 KELMCQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELENLRKATSNANQDNQMCSLLFQENTFVEQVVN- 334
Cdd:TIGR04523 352 TNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERl 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 335 -EKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEqgcvIEKLKSElag 413
Cdd:TIGR04523 432 kETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKE----LKKLNEE--- 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 414 lNKQFCCTVEQHNKEVQSLKEQHQKEISELN--ETFLSDSEKEKLTLMFEI--QGLKEQCDNLQQEKQEAILNYESLrei 489
Cdd:TIGR04523 505 -KKELEEKVKDLTKKISSLKEKIEKLESEKKekESKISDLEDELNKDDFELkkENLEKEIDEKNKEIEELKQTQKSL--- 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 490 mEILQTELGESAGKISQEFESMKQQQASD---VHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIKN 566
Cdd:TIGR04523 581 -KKKQEEKQELIDQKEKEKKDLIKEIEEKekkISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETIKEIRN 659
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
983-1441 |
1.92e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 43.29 E-value: 1.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 983 KKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEyeKQSEQLDVEKERANNFEHHVEDLTRQLRns 1062
Cdd:pfam12128 289 NQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLD--ADIETAAADQEQLPSWQSELENLEERLK-- 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1063 tLQCEKINsdneDLLARIETLQSNAKLLEVQILEVqrakamVDKELEAeklQKEQKIKEHATTVNELEELQVQLQK---- 1138
Cdd:pfam12128 365 -ALTGKHQ----DVTAKYNRRRSKIKEQNNRDIAG------IKDKLAK---IREARDRQLAVAEDDLQALESELREqlea 430
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1139 -------EKKQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITS 1211
Cdd:pfam12128 431 gklefneEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQ 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1212 LQSSVQQYEEKNTKIKQ--------LLVKTKKELADSKQAE----TDHLILQASLKGELEASQ--QQVEVYKIQL---AE 1274
Cdd:pfam12128 511 ASRRLEERQSALDELELqlfpqagtLLHFLRKEAPDWEQSIgkviSPELLHRTDLDPEVWDGSvgGELNLYGVKLdlkRI 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1275 ITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAE----QATVTSEFESYK-----VRVHNVLKQQKNKSMS 1345
Cdd:pfam12128 591 DVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGElekaSREETFARTALKnarldLRRLFDEKQSEKDKKN 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1346 QAETEGAKQEREHLEMLIDQLKIKLQDSQnnlqmnvselQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSENMM 1425
Cdd:pfam12128 671 KALAERKDSANERLNSLEAQLKQLDKKHQ----------AWLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKAAIAA 740
|
490
....*....|....*.
gi 966982775 1426 MKSEHTQTVSQLTSQN 1441
Cdd:pfam12128 741 RRSGAKAELKALETWY 756
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
373-1152 |
2.08e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 373 QHIKDEFFHEREDLEFKINELLLAKEEQGCVIEK----LKSELAGLNKQFCCTVEQHNKEVQS---LKEQHQKEISELNE 445
Cdd:pfam15921 77 ERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQsvidLQTKLQEMQMERDAMADIRRRESQSqedLRNQLQNTVHELEA 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 446 tflSDSEKEKLtlmfeiqgLKEQCDNLQQEKQEAILNYESLREIMEILqTELGESAGKISQEFESMKQQQASDVHELQQK 525
Cdd:pfam15921 157 ---AKCLKEDM--------LEDSNTQIEQLRKMMLSHEGVLQEIRSIL-VDFEEASGKKIYEHDSMSTMHFRSLGSAISK 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 526 -LRTAFTEKDALLETVNHLQGENEKLLSqqelvpelentiknlEEKNGVYLLSLSQRD---TMLKELEAKINSLTEEKDD 601
Cdd:pfam15921 225 iLRELDTEISYLKGRIFPVEDQLEALKS---------------ESQNKIELLLQQHQDrieQLISEHEVEITGLTEKASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 602 FINKLKNSYEEMDNFHKKCEREERLILelgkkveqttQYNSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVqmkvlse 681
Cdd:pfam15921 290 ARSQANSIQSQLEIIQEQARNQNSMYM----------RQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV------- 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 682 dkeVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSqknDVILKEHITELEKKLQLMVEERDNLNKL----LENEQVQKLF 757
Cdd:pfam15921 353 ---LANSELTEARTERDQFSQESGNLDDQLQKLLA---DLHKREKELSLEKEQNKRLWDRDTGNSItidhLRRELDDRNM 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 758 VKTQLYGFLKDMGSEVSedGEEKDVVNILQAVSESLAKINEEKCNL--VFQCDKKVFELEKEIKCLQEESVVQCEELKSL 835
Cdd:pfam15921 427 EVQRLEALLKAMKSECQ--GQMERQMAAIQGKNESLEKVSSLTAQLesTKEMLRKVVEELTAKKMTLESSERTVSDLTAS 504
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 836 LRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTR---LENQNLLIQVEEVSQTCNKNEIHNEKEKCSIKEHENL 912
Cdd:pfam15921 505 LQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRnvqTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRT 584
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 913 KPLLE----QKESELRDTRAELILLKDSLAKSPSVQNDLLSSVkeleekleNLEKEGKEKEEKINKIKLVAVK-AKKELD 987
Cdd:pfam15921 585 AGAMQvekaQLEKEINDRRLELQEFKILKDKKDAKIRELEARV--------SDLELEKVKLVNAGSERLRAVKdIKQERD 656
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 988 SSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNlLLEYEKQSEQLDVEKERaNNFEHHVEDLTRQLRNSTLQCE 1067
Cdd:pfam15921 657 QLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN-KLKMQLKSAQSELEQTR-NTLKSMEGSDGHAMKVAMGMQK 734
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1068 KINSDNedllARIETLQSNAKLLEVQILEVQRAKAMvdkeLEAEKLQKEQKIKEHATTVNELE-ELQVqLQKEKKQLQKT 1146
Cdd:pfam15921 735 QITAKR----GQIDALQSKIQFLEEAMTNANKEKHF----LKEEKNKLSQELSTVATEKNKMAgELEV-LRSQERRLKEK 805
|
....*.
gi 966982775 1147 MQELEL 1152
Cdd:pfam15921 806 VANMEV 811
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
322-672 |
2.28e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.75 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 322 LFQENTFVEQVVNEKVKHLEDT---LKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEffheREDLEFKINELLLAKE 398
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDAsrkIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE----IENVKSELKELEARIE 768
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 399 EQGCVIEKLKSELAGLNKQFCCT-VEQHNKEVQSLKEQHQKEISELNET--FLSDSEKEKLTLMFEIQGLKEQCDNLQQE 475
Cdd:TIGR02169 769 ELEEDLHKLEEALNDLEARLSHSrIPEIQAELSKLEEEVSRIEARLREIeqKLNRLTLEKEYLEKEIQELQEQRIDLKEQ 848
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 476 KQEAILNYESLREIMEILQTELGESAGKIsQEFESMKQQQASDVHELQQKLRTAFTEKDAL---LETVNHLQGE-NEKLL 551
Cdd:TIGR02169 849 IKSIEKEIENLNGKKEELEEELEELEAAL-RDLESRLGDLKKERDELEAQLRELERKIEELeaqIEKKRKRLSElKAKLE 927
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 552 SQQELVPELENTIKNLEEKNGVyLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKNS---YEEMDNFHKKCEREERLIL 628
Cdd:TIGR02169 928 ALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVlkrLDELKEKRAKLEEERKAIL 1006
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966982775 629 ELGKKVEQT---------TQYNS----------------ELEQKVNELTGGLEETLKEKDQNDQKLEKL 672
Cdd:TIGR02169 1007 ERIEEYEKKkrevfmeafEAINEnfneifaelsggtgelILENPDDPFAGGLELSAKPKGKPVQRLEAM 1075
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1069-1207 |
2.79e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 42.51 E-value: 2.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1069 INSDNEDLLARIETLQSNAKLLEVQILEVQRakamvdKELEAEKLQKEQKikehattvNELEELQVQLQKEKKQLQKTMQ 1148
Cdd:PRK00409 511 IGEDKEKLNELIASLEELERELEQKAEEAEA------LLKEAEKLKEELE--------EKKEKLQEEEDKLLEEAEKEAQ 576
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 966982775 1149 E-LELVKKDAQQT--TLMNMEIADYERL-MKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQE 1207
Cdd:PRK00409 577 QaIKEAKKEADEIikELRQLQKGGYASVkAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1088-1222 |
3.21e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.07 E-value: 3.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1088 KLLEVQILEVQ-RAKAMVD---KELEAEKLQKEQKIKEhattvnELEELQVQLQKEKKQLQKTMQELElvkkdaqqttlm 1163
Cdd:PRK12704 27 KIAEAKIKEAEeEAKRILEeakKEAEAIKKEALLEAKE------EIHKLRNEFEKELRERRNELQKLE------------ 88
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 966982775 1164 nmeiadyERLMKELNQkLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEK 1222
Cdd:PRK12704 89 -------KRLLQKEEN-LDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
|
|
| YydB |
COG5293 |
Uncharacterized conserved protein YydD, contains DUF2326 domain [Function unknown]; |
472-740 |
3.32e-03 |
|
Uncharacterized conserved protein YydD, contains DUF2326 domain [Function unknown];
Pssm-ID: 444096 [Multi-domain] Cd Length: 572 Bit Score: 42.24 E-value: 3.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 472 LQQEKQEAILNYESLREIMEILQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEK--DALLETVNHLQGENEK 549
Cdd:COG5293 182 LAAEKYELKEEIKELKKLRKALKDELIGSVVKSISELRAEILELEEEIEKLEKDLEKFDVAEnyEELEKELDELKREINE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 550 LLSQQElvpELENTIKNLEEkngvyllSL-SQRDTMLKELEAKINSLTEEKDDFINKlknSYEEMDNFHKKCEREERliL 628
Cdd:COG5293 262 LRNERY---SLERRLKKIER-------SLeEEIDIDPDELEKLYEEAGVFFPDQVKK---RFEEVEAFHKSIVENRR--E 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 629 ELGKKVEQTTQYNSELEQKVNELTGGLEETLKEKDQND--QKLEKLMVQMKVLSEDKEVLSA---EVKSLYEENNKLSSE 703
Cdd:COG5293 327 YLEEEIAELEAELEELEAELAELGKERAELLSLLDSKGalDKYKELQEELAELEAELEELESrleKLQELEDEIRELKEE 406
|
250 260 270
....*....|....*....|....*....|....*..
gi 966982775 704 KKQLSRDLEVFLSQKndvilKEHITELEKKLQLMVEE 740
Cdd:COG5293 407 RAELKEEIESDIEER-----KELLDEINKLFSEIVEE 438
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
1092-1374 |
3.89e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 41.43 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1092 VQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTTLmnmEIADYE 1171
Cdd:COG4372 24 ILIAALSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQA---ELAQAQ 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1172 RLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLILQ 1251
Cdd:COG4372 101 EELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAE 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1252 ASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVR 1331
Cdd:COG4372 181 AEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEI 260
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 966982775 1332 VHNVLKQQKNKSMSQAETEGAKQEREHLEMLIDQLKIKLQDSQ 1374
Cdd:COG4372 261 EELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLN 303
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
985-1242 |
4.03e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.12 E-value: 4.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 985 ELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVekeranNFEHHVEDLTRQLRNS-- 1062
Cdd:pfam10174 469 ELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEI------AVEQKKEECSKLENQLkk 542
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1063 TLQCEKINSDNEDLLARIETLQSNAKLLEVqilEVQRAKAMVD------KELEAEKLQKEQKIkehattvNELEELQVQL 1136
Cdd:pfam10174 543 AHNAEEAVRTNPEINDRIRLLEQEVARYKE---ESGKAQAEVErllgilREVENEKNDKDKKI-------AELESLTLRQ 612
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1137 QKE--KKQLQKTMQELELVKKDAQQttlmnmeiaDYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEITSLQS 1214
Cdd:pfam10174 613 MKEqnKKVANIKHGQQEMKKKGAQL---------LEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQ 683
|
250 260
....*....|....*....|....*...
gi 966982775 1215 SVQQYEEKNTKIKQLLVKTKKELADSKQ 1242
Cdd:pfam10174 684 SLAEKDGHLTNLRAERRKQLEEILEMKQ 711
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
404-692 |
4.30e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 4.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 404 IEKLKSELAGLNKQfccTVEQHNKEVQSLKEQHQKEISELNETfLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNY 483
Cdd:COG1196 222 LKELEAELLLLKLR---ELEAELEELEAELEELEAELEELEAE-LAELEAELEELRLELEELELELEEAQAEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 484 ESLREIMEILQ---TELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPEL 560
Cdd:COG1196 298 ARLEQDIARLEerrRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 561 ENTIKNLEEKNGVYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEQTTQY 640
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 966982775 641 NSELEQKVNELTGGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKS 692
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1102-1352 |
4.78e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 4.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1102 AMVDKELEAEKLQKEQKIKEHATTVNELEELQvqlqkekKQLQKTMQELElvkkdaqqttlmnmeiadyerlmkELNQKL 1181
Cdd:COG3883 12 AFADPQIQAKQKELSELQAELEAAQAELDALQ-------AELEELNEEYN------------------------ELQAEL 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1182 SNKNNKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQLLvkTKKELAD--------SKQAETDHLILQas 1253
Cdd:COG3883 61 EALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGSVSYLDVLL--GSESFSDfldrlsalSKIADADADLLE-- 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1254 lkgELEASQQQVEVYKIQLAEITSEKHKIHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVH 1333
Cdd:COG3883 137 ---ELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAA 213
|
250
....*....|....*....
gi 966982775 1334 NVLKQQKNKSMSQAETEGA 1352
Cdd:COG3883 214 AAAAAAAAAAAAAAAAAAA 232
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
522-770 |
4.78e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 41.54 E-value: 4.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 522 LQQKLRTAFTEKDALLETVNHLQgenEKLLSQQELVPELENTIK-NLEEKNGVYllslsqrDTMLKE---LEAKINSLTE 597
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQ---QQIKTYNKNIEEQRKKNGeNIARKQNKY-------DELVEEaktIKAEIEELTD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 598 EKDDF----------INKLKNSYEEMDNFHKKCEREERLILELG------KKVEQTTQYNSELEQKVNELTGGLEETLKE 661
Cdd:PHA02562 242 ELLNLvmdiedpsaaLNKLNTAAAKIKSKIEQFQKVIKMYEKGGvcptctQQISEGPDRITKIKDKLKELQHSLEKLDTA 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 662 KDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRdlevflSQKNDVILKEHITELEKKLQLMVEER 741
Cdd:PHA02562 322 IDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEE------LQAEFVDNAEELAKLQDELDKIVKTK 395
|
250 260
....*....|....*....|....*....
gi 966982775 742 DNLnklleneqVQKLFVKTQLYGFLKDMG 770
Cdd:PHA02562 396 SEL--------VKEKYHRGIVTDLLKDSG 416
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
533-1099 |
4.85e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.81 E-value: 4.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 533 KDALLETVNHLQGENEKLLSQQ-ELVPELENTIKNLEEKNGVYLLslsqRDTMLKELEAKINSLteekDDFINKLKNSYE 611
Cdd:PRK01156 126 KDVFLNSIFVGQGEMDSLISGDpAQRKKILDEILEINSLERNYDK----LKDVIDMLRAEISNI----DYLEEKLKSSNL 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 612 EMDNFHKKCEREERLILELGKKVEQ-TTQYNSELEQKVNeltggLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEV 690
Cdd:PRK01156 198 ELENIKKQIADDEKSHSITLKEIERlSIEYNNAMDDYNN-----LKSALNELSSLEDMKNRYESEIKTAESDLSMELEKN 272
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 691 ---KSLYEENNKLSSEKKQLSRD-LEVFLSQKNDVI-LKEHITELEKKLQlmvEERDNLNKLLENEQVQKLFVKTQL-YG 764
Cdd:PRK01156 273 nyyKELEERHMKIINDPVYKNRNyINDYFKYKNDIEnKKQILSNIDAEIN---KYHAIIKKLSVLQKDYNDYIKKKSrYD 349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 765 FLKDMGSEVSEDgeEKDVVNILQAVSESLAKINEEKCNLVFQCD------KKVFELEKEIKCLQEESVVQCEELKSLLRD 838
Cdd:PRK01156 350 DLNNQILELEGY--EMDYNSYLKSIESLKKKIEEYSKNIERMSAfiseilKIQEIDPDAIKKELNEINVKLQDISSKVSS 427
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 839 YEQEKVLLRKELEEIQSEKEALQ---------SDLLEMKN-------ANEKTRLENQnlLIQVEEVSQTCNKNEIHNEK- 901
Cdd:PRK01156 428 LNQRIRALRENLDELSRNMEMLNgqsvcpvcgTTLGEEKSnhiinhyNEKKSRLEEK--IREIEIEVKDIDEKIVDLKKr 505
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 902 ----EKCSIKEHENLKPLLEQKESELRDTRAELILLKDSLAKSPSVQNDLLSSVKELEEKLENLEKEGKEKEEKINKIKL 977
Cdd:PRK01156 506 keylESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETN 585
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 978 VAVK--AKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLE--------------YEKQSEQLDVE 1041
Cdd:PRK01156 586 RSRSneIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQEnkilieklrgkidnYKKQIAEIDSI 665
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*...
gi 966982775 1042 KERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQR 1099
Cdd:PRK01156 666 IPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE 723
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
98-292 |
4.86e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 4.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 98 LKKENIKMKQEVEDSVTKMEDAHKELEQSHINYVKEIENLKNELmavrAKYSEDKANLQKELEEAM---NKQLELSEQLK 174
Cdd:PRK05771 66 LPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEI----SELENEIKELEQEIERLEpwgNFDLDLSLLLG 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 175 FQNN-------SEDNVKKLQEEIEKIRPAFEEQ--------ILYLQKQLDATTDEKKEtvTQLQNIIEANSQHYQKNINS 239
Cdd:PRK05771 142 FKYVsvfvgtvPEDKLEELKLESDVENVEYISTdkgyvyvvVVVLKELSDEVEEELKK--LGFERLELEEEGTPSELIRE 219
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 966982775 240 LQEELLQLKAIhQEEVKElmcQIEASAKEHETEINKLNELKENLVKQCEASEK 292
Cdd:PRK05771 220 IKEELEEIEKE-RESLLE---ELKELAKKYLEELLALYEYLEIELERAEALSK 268
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1188-1422 |
4.93e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1188 IEDLEQEIKIQKQKQETLqEEITSLQSSVQQYEEKNTKIKQLlvktkKELADSKQAETDHLILQAslkgELEASQQQVEV 1267
Cdd:COG4913 237 LERAHEALEDAREQIELL-EPIRELAERYAAARERLAELEYL-----RAALRLWFAQRRLELLEA----ELEELRAELAR 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1268 YKIQLAEITSEKHKIHEHLktsAEQHQRTLSAYRQRVTALQEESRAAKAEQATVtsefesykvrvhnvlkqqknksmsqa 1347
Cdd:COG4913 307 LEAELERLEARLDALREEL---DELEAQIRGNGGDRLEQLEREIERLERELEER-------------------------- 357
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 966982775 1348 etegaKQEREHLEMLIDQLKIKLQDSQNNLQMNVSELQTLQSEHDTLLERHNKMLQETVSKEAELREKLCSIQSE 1422
Cdd:COG4913 358 -----ERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAE 427
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
984-1186 |
4.93e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 4.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 984 KELDSSRKETQTVREELESL-------------RSEKDQLSA--SMRDLIQAAESYKNLLLEYEKQSEQLDVEKERANNF 1048
Cdd:COG4913 235 DDLERAHEALEDAREQIELLepirelaeryaaaRERLAELEYlrAALRLWFAQRRLELLEAELEELRAELARLEAELERL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1049 EHHVEDLTRQLRNSTLQCEKINSDnedllaRIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNE 1128
Cdd:COG4913 315 EARLDALREELDELEAQIRGNGGD------RLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE 388
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 966982775 1129 LEELQVQLQKEKKQLQKTMQELELVKKDAQQttlmnmeiaDYERLMKELNQKLSNKNN 1186
Cdd:COG4913 389 AAALLEALEEELEALEEALAEAEAALRDLRR---------ELRELEAEIASLERRKSN 437
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
484-741 |
5.38e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.45 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 484 ESLREIMEILQtELG-----ESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLqgeneKLLSQQELVP 558
Cdd:PRK05771 16 SYKDEVLEALH-ELGvvhieDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKV-----SVKSLEELIK 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 559 ELENTIKNLEEKngvyllslsqrdtmLKELEAKINSLTEEKDDfINKLKNSYEEMDNFH---KKCEREERLILELGK-KV 634
Cdd:PRK05771 90 DVEEELEKIEKE--------------IKELEEEISELENEIKE-LEQEIERLEPWGNFDldlSLLLGFKYVSVFVGTvPE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 635 EQTTQYNSELEQKVNELTGGLEE-------TLKEKDQNDQK-LEKLMVQMKVLSEDKeVLSAEVKSLYEENNKLSSEKKQ 706
Cdd:PRK05771 155 DKLEELKLESDVENVEYISTDKGyvyvvvvVLKELSDEVEEeLKKLGFERLELEEEG-TPSELIREIKEELEEIEKERES 233
|
250 260 270
....*....|....*....|....*....|....*..
gi 966982775 707 LSRDLEVFLSQKNDVIL--KEHITELEKKLQLMVEER 741
Cdd:PRK05771 234 LLEELKELAKKYLEELLalYEYLEIELERAEALSKFL 270
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
99-923 |
5.40e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.50 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 99 KKENIKMKQEVEDSVTKMEDAHKELEQSHINYVKEIENLKNELMAVRAKYSEDKANLQKELEEAMNKQLELSEQLKFQNN 178
Cdd:pfam02463 171 KKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQ 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 179 SEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEKKETVTQLQNIIEANSQHYQKNINSLQEEL------LQLKAIHQ 252
Cdd:pfam02463 251 EEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLkesekeKKKAEKEL 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 253 EEVKELMCQIEASAKEHETEINKLNELKENLVKQCEASEKNIQEKYECELENLRKATSNANQDNQMCSLLFQENTFVEQV 332
Cdd:pfam02463 331 KKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLL 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 333 VNEKVKHLEDTLKELESQHSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEFKINELLLAKEEQgcvieklksela 412
Cdd:pfam02463 411 LELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQ------------ 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 413 glnkqfccTVEQHNKEVQSLKEQHQKEISELNETFLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEI 492
Cdd:pfam02463 479 --------LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVI 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 493 LQTELGESAGKISQEFESMKQQQASDVHELQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEEKNG 572
Cdd:pfam02463 551 VEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILK 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 573 VYLLSLSQRDTMLKELEAKINSLTEEKDDFINKLKNSYEEMDNFHKKCEREERLILELGKKVEqttQYNSELEQKVNELT 652
Cdd:pfam02463 631 DTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEE---ILRRQLEIKKKEQR 707
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 653 GGLEETLKEKDQNDQKLEKLMVQMKVLSEDKEVLSAEVKSLYEENNKLSSEKKQLSRDLEVFLSQKNDVILKEHITELEK 732
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 733 KLQLMVEERDNLNKLLENEQVQKLFVKTQLYGFLKDMGSEVSEDGEEKDVVNILQAVSESLAKINEEKCNLvfqcdkkVF 812
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELER-------LE 860
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 813 ELEKEIKCLQEESVVQCEELKSLLRDYEQEKVLLRKELEEIQSEKEALQSDLLEMKNANEKTRLENQNLLIQVEEVSQTC 892
Cdd:pfam02463 861 EEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEEL 940
|
810 820 830
....*....|....*....|....*....|.
gi 966982775 893 NKNEIHNEKEKCSIKEHENLKPLLEQKESEL 923
Cdd:pfam02463 941 LLEEADEKEKEENNKEEEEERNKRLLLAKEE 971
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
130-308 |
6.17e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 40.67 E-value: 6.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 130 YVKEIENLKNELMAVRAkyseDKANLQKELEEAmnkqLELSEQLKfqnnsednvKKLQEEIEKiRPAFEEQILYLQKQLD 209
Cdd:pfam00038 52 YEKEIEDLRRQLDTLTV----ERARLQLELDNL----RLAAEDFR---------QKYEDELNL-RTSAENDLVGLRKDLD 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 210 ATTDEKketvTQLQNIIEansqhyqkninSLQEELLQLKAIHQEEVKELMCQIEASAKEHETEINK-------LNELKEN 282
Cdd:pfam00038 114 EATLAR----VDLEAKIE-----------SLKEELAFLKKNHEEEVRELQAQVSDTQVNVEMDAARkldltsaLAEIRAQ 178
|
170 180
....*....|....*....|....*.
gi 966982775 283 LVKQCEASEKNIQEKYECELENLRKA 308
Cdd:pfam00038 179 YEEIAAKNREEAEEWYQSKLEELQQA 204
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
67-569 |
6.19e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 6.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 67 TEGTDDIIKALTERLDAIL----------------LEKAETEQQCLSLKKENI----KMKQEVEDSVTKMEDAHKELEQS 126
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLreineisselpelreeLEKLEKEVKELEELKEEIeeleKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 127 HINYVKEIENLKN----------------ELMAVRAKYSEDKANLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEI 190
Cdd:PRK03918 268 IEELKKEIEELEEkvkelkelkekaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 191 EKIRPAFEEQILYLQKqldatTDEKKETVTQLQNIIEANSQHYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHE 270
Cdd:PRK03918 348 KELEKRLEELEERHEL-----YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 271 TEINKLNELKENLVK-------QCEASEKNIQEKYECELENLRKATSNANQDNqmcSLLFQENTFVEQVVNE-----KVK 338
Cdd:PRK03918 423 ELKKAIEELKKAKGKcpvcgreLTEEHRKELLEEYTAELKRIEKELKEIEEKE---RKLRKELRELEKVLKKeseliKLK 499
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 339 HLEDTLKELESQ-HSILKDEVTYMNNLKLKLEMDAQHIKDEFFHEREDLEfKINELLLAKEEQGCVIEKLKSELAGLNKQ 417
Cdd:PRK03918 500 ELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLDELEEELAELLKE 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 418 F----CCTVEQHNKEVQSLKEQHQKEISelnetfLSDSEKEKLTLMFEIQGLKEQCDNLQQEKQEAILNYESLREIMEIL 493
Cdd:PRK03918 579 LeelgFESVEELEERLKELEPFYNEYLE------LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEEL 652
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966982775 494 QTELG-ESAGKISQEFESMKQQQASdvheLQQKLRTAFTEKDALLETVNHLQGENEKLLSQQELVPELENTIKNLEE 569
Cdd:PRK03918 653 EKKYSeEEYEELREEYLELSRELAG----LRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEE 725
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
1093-1209 |
6.52e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 6.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1093 QILEVQRAKAMVDKELEAEKL---------QKEQKIKEHATTVNELEELQVQLQKEKKQLQKTMQELELVKKDAQQTtlm 1163
Cdd:COG2433 380 EALEELIEKELPEEEPEAEREkeheereltEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSE--- 456
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 966982775 1164 nmeiadyERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQEEI 1209
Cdd:COG2433 457 -------ERREIRKDREISRLDREIERLERELEEERERIEELKRKL 495
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
984-1321 |
7.12e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 40.99 E-value: 7.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 984 KELDSSRKETQTVREELESLrseKDQLSASMRDLIQAAESYKNLLLEYEKQseqlDVEKERANNFEhhVEDLTRQLRNST 1063
Cdd:PLN03229 422 KKREAVKTPVRELEGEVEKL---KEQILKAKESSSKPSELALNEMIEKLKK----EIDLEYTEAVI--AMGLQERLENLR 492
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1064 LQCEKINSDNE----DLLARIETLQSNAKL------------LEVQIL-EVQRAKAMVDKELEAEKLQKE--QKIKEhAT 1124
Cdd:PLN03229 493 EEFSKANSQDQlmhpVLMEKIEKLKDEFNKrlsrapnylslkYKLDMLnEFSRAKALSEKKSKAEKLKAEinKKFKE-VM 571
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1125 TVNELEElQVQLQKEKKQLQKTMQELELVKKDAQQTTLMNMEI-ADYERLMKELNQKLSNKNNKIEDLEQEIKIQ--KQK 1201
Cdd:PLN03229 572 DRPEIKE-KMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIeLELAGVLKSMGLEVIGVTKKNKDTAEQTPPPnlQEK 650
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1202 QETLQEEITSLQSSVQQYEEKNTKIKQLlvktKKELADSKQAEtdhlilQASLKGELEASQQQVEvYKIQLAEITSEKHK 1281
Cdd:PLN03229 651 IESLNEEINKKIERVIRSSDLKSKIELL----KLEVAKASKTP------DVTEKEKIEALEQQIK-QKIAEALNSSELKE 719
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 966982775 1282 IHEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATV 1321
Cdd:PLN03229 720 KFEELEAELAAARETAAESNGSLKNDDDKEEDSKEDGSRV 759
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
132-317 |
7.23e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 7.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 132 KEIENLKNELMAVRAKYsedkANLQKELEEAMNKQLELSEQLKfqnNSEDNVKKLQEEIEKIrpafEEQILYLQKQLD-- 209
Cdd:COG3883 23 KELSELQAELEAAQAEL----DALQAELEELNEEYNELQAELE---ALQAEIDKLQAEIAEA----EAEIEERREELGer 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 210 -ATTDEKKETVTQLQNIIEANS--------------QHYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHETEIN 274
Cdd:COG3883 92 aRALYRSGGSVSYLDVLLGSESfsdfldrlsalskiADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKA 171
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 966982775 275 KLNELK---ENLVKQCEASEKNIQEKYECELENLRKATSNANQDNQ 317
Cdd:COG3883 172 ELEAQQaeqEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
75-355 |
7.31e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 41.05 E-value: 7.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 75 KALTERLDAILLEKAETEQQclslKKENIKMKQEVEDSVTKMEDAHKELeqshinyvkeiENLKNELMAVRAKYSEDK-- 152
Cdd:PRK11281 59 KLVQQDLEQTLALLDKIDRQ----KEETEQLKQQLAQAPAKLRQAQAEL-----------EALKDDNDEETRETLSTLsl 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 153 ANLQKELEEAMNKQLELSEQLKFQNNSEDNVKKLQEEIEKIRPAFEEQILYLQKQLDATTDEKKETVTQLQNIIEAnSQH 232
Cdd:PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQA-EQA 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 233 YQKNINSLQEELL----QLKAIHQEEVKELMCQIEASAKEHE---TEIN-KLNELKENLVKQCEASEKN--IQE----KY 298
Cdd:PRK11281 203 LLNAQNDLQRKSLegntQLQDLLQKQRDYLTARIQRLEHQLQllqEAINsKRLTLSEKTVQEAQSQDEAarIQAnplvAQ 282
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 966982775 299 ECEL-----ENLRKATSNANQdnqmcslLFQENTFVEQVVNekvkHLEDTLKELESQHSILK 355
Cdd:PRK11281 283 ELEInlqlsQRLLKATEKLNT-------LTQQNLRVKNWLD----RLTQSERNIKEQISVLK 333
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1007-1218 |
7.33e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 7.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1007 KDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDV------EKERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARI 1080
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAaleefrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1081 ETLQSNAKLLEVQILEVQRAKAMVD-----KELEAEKLQKEQKIKEHATTV----NELEELQVQLQKEKKQLQKTMqELE 1151
Cdd:COG3206 243 AALRAQLGSGPDALPELLQSPVIQQlraqlAELEAELAELSARYTPNHPDVialrAQIAALRAQLQQEAQRILASL-EAE 321
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 966982775 1152 LVKKDAQQTTLMNmEIADYERLMKELNQKLSnknnKIEDLEQEIKIQKQKQETLQEEITSLQSSVQQ 1218
Cdd:COG3206 322 LEALQAREASLQA-QLAQLEARLAELPELEA----ELRRLEREVEVARELYESLLQRLEEARLAEAL 383
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
980-1441 |
8.03e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 8.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 980 VKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLDVEkerannfehHVEDLTRQL 1059
Cdd:TIGR00606 322 VDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFE---------RGPFSERQI 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1060 RNS-TLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAMVDKELEAEKLQKEQKIKEHATTVNELEELQV---Q 1135
Cdd:TIGR00606 393 KNFhTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGssdR 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1136 LQKEKKQLQKTMQELELVKKDAQQTTLMNMEI------ADYERLMKELNQKLSNKNNKIEDLEQEIKIQKQKQETLQE-- 1207
Cdd:TIGR00606 473 ILELDQELRKAERELSKAEKNSLTETLKKEVKslqnekADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQir 552
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1208 EITSLQSSVQQYEEKNTKIKQLLVKTKKELADSKQAETDHLilqASLKGELEASQQQVEVYKIQLAEITSEKHKIHEHL- 1286
Cdd:TIGR00606 553 KIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRL---AKLNKELASLEQNKNHINNELESKEEQLSSYEDKLf 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1287 -KTSAEQHQRTLSAYRQRVtalqEESRAAKAEQATVTSEFESYKVRVHNvlkqqKNKSMSQAETEGAKQEREhLEMLIDQ 1365
Cdd:TIGR00606 630 dVCGSQDEESDLERLKEEI----EKSSKQRAMLAGATAVYSQFITQLTD-----ENQSCCPVCQRVFQTEAE-LQEFISD 699
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 966982775 1366 LKIKLQDSQNNLQMNVSELQTLQSEHDTLL---ERHNKMLQETVSKEAELREKLCSIQSENMMMKSEHTQTVSQLTSQN 1441
Cdd:TIGR00606 700 LQSKLRLAPDKLKSTESELKKKEKRRDEMLglaPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM 778
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
960-1187 |
8.22e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 8.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 960 NLEKEGKekeekinkiklvavKAKKELDSSRKETQTVREELESLRSEKDQLSASMRDLIQAAESYKNLLLEYEKQSEQLD 1039
Cdd:COG4942 31 QLQQEIA--------------ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1040 VE-KERANNFEHHVEDLTRQLRNSTLQCEKINSDNEDLLARIETLQSNAKLLEVQILEVQRAKAmvdkELEAEKLQKEQK 1118
Cdd:COG4942 97 AElEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLA----ELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1119 IKEHATTVNELEELQVQLQKEKKQLQKTMQELEL-VKKDAQQTTLMNMEIADYERLMKELNQKLSNKNNK 1187
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKeLAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
213-460 |
8.30e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 40.68 E-value: 8.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 213 DEKKETVTQLQN-----IIEANSQ-------HYQKNINSLQEELLQLKAIHQEEVKELMCQIEASAKEHETEINKLNELK 280
Cdd:PRK05771 16 SYKDEVLEALHElgvvhIEDLKEElsnerlrKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 281 ENLVKQCEASEKNIQE------KYECELENLRKaTSNANQDNQmcslLFQENTFVEQVVNEKVKHLEDTLKELESQH--- 351
Cdd:PRK05771 96 EKIEKEIKELEEEISEleneikELEQEIERLEP-WGNFDLDLS----LLLGFKYVSVFVGTVPEDKLEELKLESDVEnve 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 352 --SILKDEVTYM-NNLKLKlemdaqhiKDEFFHEREDLEFKINELL---LAKEeqgcVIEKLKSELAGLNKQfcctVEQH 425
Cdd:PRK05771 171 yiSTDKGYVYVVvVVLKEL--------SDEVEEELKKLGFERLELEeegTPSE----LIREIKEELEEIEKE----RESL 234
|
250 260 270
....*....|....*....|....*....|....*
gi 966982775 426 NKEVQSLKEQHQKEISELNETFLSDSEKEKLTLMF 460
Cdd:PRK05771 235 LEELKELAKKYLEELLALYEYLEIELERAEALSKF 269
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1187-1397 |
9.93e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 9.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1187 KIEDLEQEIKIQKQKQETLQEEITSLQSSVQQYEEKNTKIKQllvktkkeLADSKQAETDHlilqASLKGELEASQQqve 1266
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEALEAELDALQERREALQR--------LAEYSWDEIDV----ASAEREIAELEA--- 675
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 966982775 1267 vykiQLAEITSEKHKIhEHLKTSAEQHQRTLSAYRQRVTALQEESRAAKAEQATVTSEFESYKVRVhnvlkqqknksmSQ 1346
Cdd:COG4913 676 ----ELERLDASSDDL-AALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL------------EA 738
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 966982775 1347 AETEGAKQEREHLEMLIDQLKIK--LQDSQNNLQMNVSELQTLQSEHDTLLER 1397
Cdd:COG4913 739 AEDLARLELRALLEERFAAALGDavERELRENLEERIDALRARLNRAEEELER 791
|
|
|