|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
676-1347 |
1.35e-24 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 112.07 E-value: 1.35e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 676 EDLQRRLEEFEGERERLQRMADSAAS----LEQQLEQVKLTLLQRDQQLEALQQEHL-------DLMKQLTLTQEALQSR 744
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAelqeLEEKLEELRLEVSELEEEIEELQKELYalaneisRLEQQKQILRERLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 745 EQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREE 824
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 825 LAIKSGQVE----HLQQETATLKKQTQKIKEQFLQ-QKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVH 899
Cdd:TIGR02168 395 IASLNNEIErleaRLERLEDRRERLQQEIEELLKKlEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAE 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 900 GEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQ---KERDEMETHL----QSLQFDKEQMVAVTEA-NEVLKKQIEEL 971
Cdd:TIGR02168 475 QALDAAERELAQLQARLDSLERLQENLEGFSEGVKallKNQSGLSGILgvlsELISVDEGYEAAIEAAlGGRLQAVVVEN 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 972 QQEARKAITEQKQKM----------RRLGSDLTSAQKEMKTKHkayENAVGILSRRLQEALAAKEAADAELGQLR----- 1036
Cdd:TIGR02168 555 LNAAKKAIAFLKQNElgrvtflpldSIKGTEIQGNDREILKNI---EGFLGVAKDLVKFDPKLRKALSYLLGGVLvvddl 631
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1037 AQGGSGDSSLALHERI----------------QALEAELQAVSHSKTLLE-----KELQEVIALTSQELEESREKVLELE 1095
Cdd:TIGR02168 632 DNALELAKKLRPGYRIvtldgdlvrpggvitgGSAKTNSSILERRREIEEleekiEELEEKIAELEKALAELRKELEELE 711
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1096 DEL-----------QESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLNLQV 1164
Cdd:TIGR02168 712 EELeqlrkeleelsRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1165 QAVLQRKEEEDRQmkqlVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAE 1244
Cdd:TIGR02168 792 EQLKEELKALREA----LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEEL 867
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1245 ADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLD-LTEQ--- 1320
Cdd:TIGR02168 868 IEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDnLQERlse 947
|
730 740
....*....|....*....|....*..
gi 1622847816 1321 QGRKELEGLQQLLQNVKSELEMAQEDL 1347
Cdd:TIGR02168 948 EYSLTLEEAEALENKIEDDEEEARRRL 974
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
654-1205 |
4.39e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 103.86 E-value: 4.39e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 654 EADMLDQEAAFLQIQEAKTMVEEdLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQ 733
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEE-LEAELEELEAELEELEA---ELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 734 LTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEE 813
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 814 TSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQ 893
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 894 ELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQF---------------------DKE 952
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAalllaglrglagavavligveAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 953 QMVAVTEANEVLKKQIEELQQEARKAITEQKQKmrrlgsDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAEL 1032
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYLKAA------KAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLRE 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1033 GQLRAQGGSGDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRgfrkkIKRLE 1112
Cdd:COG1196 611 ADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE-----LEELA 685
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1113 ESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKE 1192
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL 765
|
570
....*....|...
gi 1622847816 1193 KEKVNSLKEQVAA 1205
Cdd:COG1196 766 ERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
425-990 |
6.50e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 103.09 E-value: 6.50e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 425 LEGQLEALSLEASQALK------EKAELQAQLAAVSTKLQaqvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNM 498
Cdd:COG1196 198 LERQLEPLERQAEKAERyrelkeELKELEAELLLLKLREL---------EAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 499 LEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQQMTALQSQLQQVQLERATLTSKLKASQAEISS 578
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 579 LQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHL---KLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEA 655
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEAlraAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 656 DMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLT 735
Cdd:COG1196 429 ALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 736 LTQEALQSREQSLDALQTH---YDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEF------------ 800
Cdd:COG1196 509 GVKAALLLAGLRGLAGAVAvliGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFlpldkiraraal 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 801 ---------DRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKD 871
Cdd:COG1196 589 aaalargaiGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRR 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 872 QLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEghlQSAQKERDEMETHLQSLQFDK 951
Cdd:COG1196 669 ELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEE---ALEEQLEAEREELLEELLEEE 745
|
570 580 590
....*....|....*....|....*....|....*....
gi 1622847816 952 EQMVAVTEANEVLKKQIEELQQEARKAiteqKQKMRRLG 990
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELERELERL----EREIEALG 780
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
679-1311 |
8.32e-22 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 103.09 E-value: 8.32e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 679 QRRLEEfegERERLQRMADSAASLEQQLEQVKLtllQRDQQLEALQQehldlmkqltltQEALQSREQSLDALqtHYDEL 758
Cdd:COG1196 178 ERKLEA---TEENLERLEDILGELERQLEPLER---QAEKAERYREL------------KEELKELEAELLLL--KLREL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 759 QARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQE 838
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 839 TATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQ 918
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 919 VRQQMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK 998
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELE---EALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAAL 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 999 EMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSGDSSLAlheriQALEAELQAVSHSKTLLEKELQEVIA 1078
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLA-----GAVAVLIGVEAAYEAALEAALAAALQ 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1079 LTSQELEESREKVLELEDELQESRGFR---KKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREA 1155
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFlplDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVA 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1156 DLVHLNLQVQAVL-QRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAK 1234
Cdd:COG1196 630 ARLEAALRRAVTLaGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEEREL 709
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847816 1235 EHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLdeqlskqPVGNQEMENLKWEVDQKEREIQSL 1311
Cdd:COG1196 710 AEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEE-------LPEPPDLEELERELERLEREIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
675-1351 |
1.22e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 99.36 E-value: 1.22e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 675 EEDLQRR---LEEFEGERERLQRMADSA---ASLEQQLEQVKLTLL-----QRDQQLEALQQEHLDLMKQLTLTQEALQS 743
Cdd:TIGR02168 185 RENLDRLediLNELERQLKSLERQAEKAeryKELKAELRELELALLvlrleELREELEELQEELKEAEEELEELTAELQE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 744 REQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLRE 823
Cdd:TIGR02168 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 824 ELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKR 903
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 904 AA-----EAELSRLHREAAQVRQQMADLEGH-------LQSAQKERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEEL 971
Cdd:TIGR02168 425 ELlkkleEAELKELQAELEELEEELEELQEElerleeaLEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 972 QQEARKAITEQKQKMRRLG--SDLTSAQKEmktkhkaYENAVGI-LSRRLQEALAAKEAADAELGQLRAQGGSGDSSLAL 1048
Cdd:TIGR02168 505 SEGVKALLKNQSGLSGILGvlSELISVDEG-------YEAAIEAaLGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1049 HERIQALEAElqaVSHSKTLLEKELQEVIALTSQELEESREKVLE-------LEDELQESRGFRKKIKRlEESNKKLALE 1121
Cdd:TIGR02168 578 LDSIKGTEIQ---GNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlVVDDLDNALELAKKLRP-GYRIVTLDGD 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1122 LEHEKGKLTGlgqsnAALREHNSILETA-----LAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKV 1196
Cdd:TIGR02168 654 LVRPGGVITG-----GSAKTNSSILERRreieeLEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQI 728
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1197 NSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLL 1276
Cdd:TIGR02168 729 SALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL 808
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847816 1277 QKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQG---RKELEGLQQLLQNVKSELEMAQEDLSMTQ 1351
Cdd:TIGR02168 809 RAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIeslAAEIEELEELIEELESELEALLNERASLE 886
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
409-1268 |
5.88e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.50 E-value: 5.88e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 409 AETQEEMLQV---LKEkmrLEGQLEALSLEASQALKEKaELQAQLAAVSTKLQAQvecshssqqRQDSLSSEVDTLKQSc 485
Cdd:TIGR02168 182 ERTRENLDRLediLNE---LERQLKSLERQAEKAERYK-ELKAELRELELALLVL---------RLEELREELEELQEE- 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 486 wdleramtdlqnmLEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQQMTALQSQLQQVQLERATL 565
Cdd:TIGR02168 248 -------------LKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANL 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 566 TSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAhiqvgqmtqagllehlklenvSLSQQLTETQhrsmKEKGR 645
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE---------------------SLEAELEELE----AELEE 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 646 IAAQLQGIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRdqQLEALQQ 725
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA--ELEELEE 447
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 726 EHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDticllqnekiILEAALQAAKSGKEEFDRGAR 805
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLER----------LQENLEGFSEGVKALLKNQSG 517
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 806 RLEEGTEETSETLEKLREELAIKSGQVEHLQQetatlkkqtqkikeqflqqkVMVEayrrDATSKDQLISELK--ATRKR 883
Cdd:TIGR02168 518 LSGILGVLSELISVDEGYEAAIEAALGGRLQA--------------------VVVE----NLNAAKKAIAFLKqnELGRV 573
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 884 LDSELKELRQELMQVHGEKRAAEAE-----LSRLHREAAQVRQQMADLEGHLQSAqkerDEMETHLQSLQFDKEQMVAVT 958
Cdd:TIGR02168 574 TFLPLDSIKGTEIQGNDREILKNIEgflgvAKDLVKFDPKLRKALSYLLGGVLVV----DDLDNALELAKKLRPGYRIVT 649
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 959 EANEVLKK---------QIEELQQEARKAITEQKQKMRRLGSDLTSAQKEM---KTKHKAYENAVGILSRRLQEALAAKE 1026
Cdd:TIGR02168 650 LDGDLVRPggvitggsaKTNSSILERRREIEELEEKIEELEEKIAELEKALaelRKELEELEEELEQLRKELEELSRQIS 729
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1027 AADAELGQLRAQggsgdsSLALHERIQALEAELqavshsktlleKELQEVIALTSQELEESREKVLELEDELQEsrgFRK 1106
Cdd:TIGR02168 730 ALRKDLARLEAE------VEQLEERIAQLSKEL-----------TELEAEIEELEERLEEAEEELAEAEAEIEE---LEA 789
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1107 KIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLNLQvqavLQRKEEEDRQMKQLVQALQ 1186
Cdd:TIGR02168 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ----IEELSEDIESLAAEIEELE 865
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1187 ASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAEL 1266
Cdd:TIGR02168 866 ELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
..
gi 1622847816 1267 AE 1268
Cdd:TIGR02168 946 SE 947
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
403-1115 |
1.44e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 89.35 E-value: 1.44e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 403 SLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAVSTKLQAQVECSHSSQQRQDSLSSEVDtlk 482
Cdd:TIGR02168 278 ELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE--- 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 483 qscwdleramtDLQNMLEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQQMTALQSQLQQVQLER 562
Cdd:TIGR02168 355 -----------SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEI 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 563 ATLTSKL-----KASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQH 637
Cdd:TIGR02168 424 EELLKKLeeaelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 638 RSMKEKGRIAAQLQGieADMLDQEAAFLQIQEA-KTMVEEDLQRRLEEFEGERErlqRMADSAASLEQQLEQVKLTLLQR 716
Cdd:TIGR02168 504 FSEGVKALLKNQSGL--SGILGVLSELISVDEGyEAAIEAALGGRLQAVVVENL---NAAKKAIAFLKQNELGRVTFLPL 578
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 717 DQQLEA-LQQEHLDLMKQLTLTQEALQSREQSLDALQ-------------THYDELQARLGELQGEAasredTICLLQNE 782
Cdd:TIGR02168 579 DSIKGTeIQGNDREILKNIEGFLGVAKDLVKFDPKLRkalsyllggvlvvDDLDNALELAKKLRPGY-----RIVTLDGD 653
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 783 kIILEAALQAAKSGKEEFDRGARRL-----EEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQK 857
Cdd:TIGR02168 654 -LVRPGGVITGGSAKTNSSILERRReieelEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 858 VMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKER 937
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 938 DEMETHLQSLQFDKE----QMVAVTEANEVLKKQIEELQQE---ARKAITEQKQKMRRLGSDLTSAQKEMKTKhkayENA 1010
Cdd:TIGR02168 813 TLLNEEAANLRERLEslerRIAATERRLEDLEEQIEELSEDiesLAAEIEELEELIEELESELEALLNERASL----EEA 888
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1011 VGILSRRLQEALAAKEAADAELGQLRAQGGSGDSSLA-LHERIQALEAELQavshskTLLEKeLQEVIALTSQELEESRE 1089
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSELRRELEELREKLAqLELRLEGLEVRID------NLQER-LSEEYSLTLEEAEALEN 961
|
730 740
....*....|....*....|....*..
gi 1622847816 1090 KVLELEDELQES-RGFRKKIKRLEESN 1115
Cdd:TIGR02168 962 KIEDDEEEARRRlKRLENKIKELGPVN 988
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
665-1348 |
1.58e-17 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 88.97 E-value: 1.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 665 LQIQEAKTMVEEDLQRRLEEFEGE---------RERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQehldLMKQLT 735
Cdd:TIGR02169 203 LRREREKAERYQALLKEKREYEGYellkekealERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ----LLEELN 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 736 LTQEALQSREQSldalqthydELQARLGELQGEAASREDTICL-------LQNEKIILEAALQAAKSGKEEFDRGARRLE 808
Cdd:TIGR02169 279 KKIKDLGEEEQL---------RVKEKIGELEAEIASLERSIAEkereledAEERLAKLEAEIDKLLAEIEELEREIEEER 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 809 EGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQF--------------------LQQKVM-VEAYRRDA 867
Cdd:TIGR02169 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLeklkreinelkreldrlqeeLQRLSEeLADLNAAI 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 868 TSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLhreaaqvRQQMADLEGHLQSAQKERDEMETHLQSL 947
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL-------KEEYDRVEKELSKLQRELAEAEAQARAS 502
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 948 QFDKEQMVAVTeanEVLKKQIE---------------------------------ELQQEARKAITEQKQ---------- 984
Cdd:TIGR02169 503 EERVRGGRAVE---EVLKASIQgvhgtvaqlgsvgeryataievaagnrlnnvvvEDDAVAKEAIELLKRrkagratflp 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 985 --KMRRLGSDLTSAQKE--------MKTKHKAYENAVGI------------LSRRLQEA--------LAAKEAADAELGQ 1034
Cdd:TIGR02169 580 lnKMRDERRDLSILSEDgvigfavdLVEFDPKYEPAFKYvfgdtlvvedieAARRLMGKyrmvtlegELFEKSGAMTGGS 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1035 LRAQGGSGDS------SLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKI 1108
Cdd:TIGR02169 660 RAPRGGILFSrsepaeLQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1109 KRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLNL-QVQAVLQRKEEEDRQMKQLVQALQA 1187
Cdd:TIGR02169 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIpEIQAELSKLEEEVSRIEARLREIEQ 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1188 SLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELA 1267
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1268 EARvqlqllqkqldeqlskqpvgnQEMENLKWEVDQKEREIQSLKQQLDLTEQQgrkelegLQQLLQNVKSELEMAQEDL 1347
Cdd:TIGR02169 900 ELE---------------------RKIEELEAQIEKKRKRLSELKAKLEALEEE-------LSEIEDPKGEDEEIPEEEL 951
|
.
gi 1622847816 1348 S 1348
Cdd:TIGR02169 952 S 952
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
404-1197 |
1.58e-17 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 88.96 E-value: 1.58e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 404 LESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQ-------AQLAAVSTKLQAQVECSHSSQQRQDSLSS 476
Cdd:TIGR02168 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkelyalaNEISRLEQQKQILRERLANLERQLEELEA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 477 EVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQQMTAlqsqlq 556
Cdd:TIGR02168 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS------ 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 557 qvqleratLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAglLEHLKLENVSLSQQLTetq 636
Cdd:TIGR02168 398 --------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEE--LEELQEELERLEEALE--- 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 637 hrsmkekgRIAAQLQGIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQrmadsAASLEQQLEQVKLTLLQR 716
Cdd:TIGR02168 465 --------ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK-----NQSGLSGILGVLSELISV 531
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 717 DQQ----LEALQQEHLD--LMKQLTLTQEALQSREQS-------LDALQTHYDELQARLGELQGEAASREDTICLLQNEK 783
Cdd:TIGR02168 532 DEGyeaaIEAALGGRLQavVVENLNAAKKAIAFLKQNelgrvtfLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFD 611
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 784 IILEAALQAAKSG------KEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVE------HLQQETATLKKQTQKIKE 851
Cdd:TIGR02168 612 PKLRKALSYLLGGvlvvddLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKtnssilERRREIEELEEKIEELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 852 QFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQ 931
Cdd:TIGR02168 692 KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 932 SAQKERDEMETHLQSLQfdkEQMVAVTEANEVLKKQIEELQQEarkaITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAV 1011
Cdd:TIGR02168 772 EAEEELAEAEAEIEELE---AQIEQLKEELKALREALDELRAE----LTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1012 GILSRRLQEALAAKEAADAELGQLRaqggsgdsslALHERIQALEAELQAVSHSKTLLEKELQEVialtSQELEESREKV 1091
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIE----------ELESELEALLNERASLEEALALLRSELEEL----SEELRELESKR 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1092 LELEDELQESrgfRKKIKRLEESNKKLALELEHEKGKLTGLGQSNA-ALREHNSILETALAKREADLVHLNLQV------ 1164
Cdd:TIGR02168 911 SELRRELEEL---REKLAQLELRLEGLEVRIDNLQERLSEEYSLTLeEAEALENKIEDDEEEARRRLKRLENKIkelgpv 987
|
810 820 830 840
....*....|....*....|....*....|....*....|.
gi 1622847816 1165 --------QAVLQRKEEEDRQMKQLVQALqASLEKEKEKVN 1197
Cdd:TIGR02168 988 nlaaieeyEELKERYDFLTAQKEDLTEAK-ETLEEAIEEID 1027
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
835-1456 |
6.10e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.91 E-value: 6.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 835 LQQETATLKKQTQKIKEQFLQQKVmvEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHR 914
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAEL--EELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 915 EAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLT 994
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELA 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 995 SAQKEMKTKHKAYENAvgiLSRRLQEALAAKEAADAELGQLRAQggsgdssLALHERIQALEAELQAVSHSKTLLEKELQ 1074
Cdd:COG1196 376 EAEEELEELAEELLEA---LRAAAELAAQLEELEEAEEALLERL-------ERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1075 EVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKgkltglgqsnAALREHNSILETALAKRE 1154
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLL----------EAEADYEGFLEGVKAALL 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1155 ADLVHLNLQVQAVLQRKEEEdrqmkqLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAK 1234
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAA------YEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALA 589
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1235 EHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQldeqlskqpvGNQEMENLKWEVDQKEREIQSLKQQ 1314
Cdd:COG1196 590 AALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA----------ALRRAVTLAGRLREVTLEGEGGSAG 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1315 LDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPk 1394
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL- 738
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622847816 1395 geasssnpatpikipdcpvpASLLEELLKPPPAVSKEPLKNLNscLQQLKQEMDSLQRQMEE 1456
Cdd:COG1196 739 --------------------EELLEEEELLEEEALEELPEPPD--LEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
373-927 |
3.88e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 3.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 373 LQAAAAEHQDQGQEVNGEVRSRRESIcssVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAA 452
Cdd:COG1196 251 LEAELEELEAELAELEAELEELRLEL---EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 453 VSTKLQAQvecshssQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQK 532
Cdd:COG1196 328 LEEELEEL-------EEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAA 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 533 SMLSKDNTVHDLRQQMTALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQM 612
Cdd:COG1196 401 QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALA 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 613 TQAGLLEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAflqiqeaktmVEEDLQRRLEEFEGEReRL 692
Cdd:COG1196 481 ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIG----------VEAAYEAALEAALAAA-LQ 549
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 693 QRMADSAASLEQQLEQVKLTLLQRDQQLEalqqehLDLMKQLTLTQEALQSREQSLDALQTHYD--ELQARLGELQGEAA 770
Cdd:COG1196 550 NIVVEDDEVAAAAIEYLKAAKAGRATFLP------LDKIRARAALAAALARGAIGAAVDLVASDlrEADARYYVLGDTLL 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 771 SREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIK 850
Cdd:COG1196 624 GRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847816 851 EQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLE 927
Cdd:COG1196 704 EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALG 780
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
678-1356 |
2.47e-15 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 82.04 E-value: 2.47e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 678 LQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDE 757
Cdd:TIGR02169 292 VKEKIGELEAEIASLER---SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELED 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 758 LQARLGELQGEAASREDticllqnEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQ 837
Cdd:TIGR02169 369 LRAELEEVDKEFAETRD-------ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 838 ETATLKKQTQKIKEQFLQQKVMVEAYRRDatskdqlISELKATRKRLDSELKELRQELMQVHGEKRAAEaelSRLHREAA 917
Cdd:TIGR02169 442 EKEDKALEIKKQEWKLEQLAADLSKYEQE-------LYDLKEEYDRVEKELSKLQRELAEAEAQARASE---ERVRGGRA 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 918 QVRQQMADLEG-HLQSAQ--KERDEMETHLQSLQFDKEQMVaVTEANEVLKKQIEELQQE-ARKAITEQKQKMRRLGSDL 993
Cdd:TIGR02169 512 VEEVLKASIQGvHGTVAQlgSVGERYATAIEVAAGNRLNNV-VVEDDAVAKEAIELLKRRkAGRATFLPLNKMRDERRDL 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 994 TSAQKE--------MKTKHKAYENAV-----------------------------GIL----------SRRLQEALAAKE 1026
Cdd:TIGR02169 591 SILSEDgvigfavdLVEFDPKYEPAFkyvfgdtlvvedieaarrlmgkyrmvtleGELfeksgamtggSRAPRGGILFSR 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1027 AADAELGQLRAQGGSGDSSLA--------LHERIQALEAELQAVSHSKTLLEKELQEV---IALTSQELEESREKVLELE 1095
Cdd:TIGR02169 671 SEPAELQRLRERLEGLKRELSslqselrrIENRLDELSQELSDASRKIGEIEKEIEQLeqeEEKLKERLEELEEDLSSLE 750
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1096 DELQESRG----FRKKIKRLEESNKKLALELEHEKGKLTGLGQSNaaLREHNSILETALAKREADLVHLNlqvqAVLQRK 1171
Cdd:TIGR02169 751 QEIENVKSelkeLEARIEELEEDLHKLEEALNDLEARLSHSRIPE--IQAELSKLEEEVSRIEARLREIE----QKLNRL 824
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1172 EEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIR 1251
Cdd:TIGR02169 825 TLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERK 904
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1252 EGKHSQEI---AQFQAELAEAR-VQLQLLQKQLDEQLSKQPVGNQEM--ENLKWEVDQKEREIQSLK-------QQLDLT 1318
Cdd:TIGR02169 905 IEELEAQIekkRKRLSELKAKLeALEEELSEIEDPKGEDEEIPEEELslEDVQAELQRVEEEIRALEpvnmlaiQEYEEV 984
|
730 740 750
....*....|....*....|....*....|....*...
gi 1622847816 1319 EQQgRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFM 1356
Cdd:TIGR02169 985 LKR-LDELKEKRAKLEEERKAILERIEEYEKKKREVFM 1021
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
657-1270 |
4.96e-14 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 77.65 E-value: 4.96e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 657 MLDQEAAFLQIQEAKTMVEE--DLQRRLEEFEGERERLQRMADSAASLEQQLEQV--------KLTLLQRDQQLEALQQE 726
Cdd:COG4913 217 MLEEPDTFEAADALVEHFDDleRAHEALEDAREQIELLEPIRELAERYAAARERLaeleylraALRLWFAQRRLELLEAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 727 HLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRedticlLQNEKIILEAALQAAKSGKEEFDRGARR 806
Cdd:COG4913 297 LEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQ------LEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 807 LEEGTEETSETLEKLREELAiksgqvehlqQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDS 886
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAA----------ALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 887 ELKELRQ-----------------ELMQVHGEKR----AAEAEL----------SRLHREAAQVRQQMaDLEGHLQSaQK 935
Cdd:COG4913 441 RLLALRDalaealgldeaelpfvgELIEVRPEEErwrgAIERVLggfaltllvpPEHYAAALRWVNRL-HLRGRLVY-ER 518
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 936 ERdEMETHLQSLQFDKEQMVAVTE---------ANEVLKKQ--------IEELQQEaRKAITEQ---KQKMRR------- 988
Cdd:COG4913 519 VR-TGLPDPERPRLDPDSLAGKLDfkphpfrawLEAELGRRfdyvcvdsPEELRRH-PRAITRAgqvKGNGTRhekddrr 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 989 -------LGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSGDSSL---ALHERIQALEAE 1058
Cdd:COG4913 597 rirsryvLGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvaSAEREIAELEAE 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1059 LQAvshsktlLEKELQEVIALTsQELEESREKVLELEDELQESRGfrkKIKRLEESNKKLALELEHEKGKLTGLGQsnaa 1138
Cdd:COG4913 677 LER-------LDASSDDLAALE-EQLEELEAELEELEEELDELKG---EIGRLEKELEQAEEELDELQDRLEAAED---- 741
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1139 lrehnsiletalAKREADLVHLNLQVQAVLQrkeeeDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKveaghnRRHVK 1218
Cdd:COG4913 742 ------------LARLELRALLEERFAAALG-----DAVERELRENLEERIDALRARLNRAEEELERAM------RAFNR 798
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847816 1219 AASLELSEVKKELQAKEHLVQKLQA-EADDL-----QIREGKHS---QEIAQFQAELAEAR 1270
Cdd:COG4913 799 EWPAETADLDADLESLPEYLALLDRlEEDGLpeyeeRFKELLNEnsiEFVADLLSKLRRAI 859
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1046-1346 |
5.27e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 74.20 E-value: 5.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1046 LALHERIQALEAELQAVSHSKTLLEKE-LQEVIALTSQELEESREKVLELEDELQEsrgFRKKIKRLEESNKKLALELEH 1124
Cdd:COG1196 216 RELKEELKELEAELLLLKLRELEAELEeLEAELEELEAELEELEAELAELEAELEE---LRLELEELELELEEAQAEEYE 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1125 EKGKLTGLGQSNAALREHNSILETALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVA 1204
Cdd:COG1196 293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1205 AAKVEaghnRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQL 1284
Cdd:COG1196 373 ELAEA----EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622847816 1285 SKQpvgnqemENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQED 1346
Cdd:COG1196 449 EEE-------AELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
561-1252 |
4.05e-12 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 71.30 E-value: 4.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 561 ERATLTSKLKASQAEISSLQSVRQWYQQQlalaqeARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSM 640
Cdd:pfam15921 279 EITGLTEKASSARSQANSIQSQLEIIQEQ------ARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLV 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 641 KEKGRIAAQLQgiEADMLDQEAAFLQIQEAKTMVeeDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQL 720
Cdd:pfam15921 353 LANSELTEART--ERDQFSQESGNLDDQLQKLLA--DLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEV 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 721 EALQQehldLMKqlTLTQEALQSREQSLDALQTHYDELQaRLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEF 800
Cdd:pfam15921 429 QRLEA----LLK--AMKSECQGQMERQMAAIQGKNESLE-KVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 801 DRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKK---QTQKIKEQFLQQKVMVEAYRRDATSKDQLISE- 876
Cdd:pfam15921 502 TASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvqtECEALKLQMAEKDKVIEILRQQIENMTQLVGQh 581
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 877 ------LKATRKRLDSELKELRQELMQVHGEK-------RAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMeth 943
Cdd:pfam15921 582 grtagaMQVEKAQLEKEINDRRLELQEFKILKdkkdakiRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQL--- 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 944 LQSLQFDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALA 1023
Cdd:pfam15921 659 LNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITA 738
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1024 AKEAADAELGQLR----AQGGSGDSSLALHERIQALEAELQAVSHSKTLLEKELQeviALTSQElEESREKVLELEDELQ 1099
Cdd:pfam15921 739 KRGQIDALQSKIQfleeAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELE---VLRSQE-RRLKEKVANMEVALD 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1100 ESR----GFRKKIKRLEESNKKLALELEHEKGKLTGLG------------QSNAALREHNSILETAlaKREADLVHLNLQ 1163
Cdd:pfam15921 815 KASlqfaECQDIIQRQEQESVRLKLQHTLDVKELQGPGytsnssmkprllQPASFTRTHSNVPSSQ--STASFLSHHSRK 892
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1164 VQAVlqrKEEEDRQMKQLVQALQASLEKEkEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQA 1243
Cdd:pfam15921 893 TNAL---KEDPTRDLKQLLQELRSVINEE-PTVQLSKAEDKGRAPSLGALDDRVRDCIIESSLRSDICHSSSNSLQTEGS 968
|
....*....
gi 1622847816 1244 EADDLQIRE 1252
Cdd:pfam15921 969 KSSETCSRE 977
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
877-1367 |
1.12e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 69.71 E-value: 1.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 877 LKATRKRLDSELKELRQELM---QVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETH---LQSLQFD 950
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKrteNIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 951 KEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLgsdltsaqKEMKTKHKAYENAVGILSRRLQEALAAKEAADA 1030
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL--------KELKEKAEEYIKLSEFYEEYLDELREIEKRLSR 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1031 ELGQLRAqggsgdsslaLHERIQALE---AELQAVSHSKTLLEKELqEVIALTSQELEESREKVLELEdELQESRGFR-- 1105
Cdd:PRK03918 319 LEEEING----------IEERIKELEekeERLEELKKKLKELEKRL-EELEERHELYEEAKAKKEELE-RLKKRLTGLtp 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1106 ----KKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETA-----LAKREADLVH-LNL---------QVQA 1166
Cdd:PRK03918 387 ekleKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAkgkcpVCGRELTEEHrKELleeytaelkRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1167 VLQRKEEEDRQMKQLVQALQASLEKEKE--KVNSLKEQVAAAKVE-AGHNRRHVKAASLELSEVKKELQAKEHLVQKLQA 1243
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELEKVLKKESEliKLKELAEQLKELEEKlKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1244 EADDLQIREGKHS---QEIAQFQAELAEArvqlqllqkqldeqlskqpvgNQEMENLKWE-VDQKEREIQSLKQQLD--L 1317
Cdd:PRK03918 547 ELEKLEELKKKLAeleKKLDELEEELAEL---------------------LKELEELGFEsVEELEERLKELEPFYNeyL 605
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1318 TEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNN 1367
Cdd:PRK03918 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKK 655
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
618-1353 |
7.29e-11 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 67.30 E-value: 7.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 618 LEHLKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMAD 697
Cdd:pfam02463 210 LEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELK 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 698 SAASLEQQLEQVKLTLLQRDQQLEALQQEHldlMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEaasREDTIC 777
Cdd:pfam02463 290 LLAKEEEELKSELLKLERRKVDDEEKLKES---EKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEE---EEELEK 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 778 LLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQ---TQKIKEQFL 854
Cdd:pfam02463 364 LQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEIleeEEESIELKQ 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 855 QQKVMVEAYRRDATS---KDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQ 931
Cdd:pfam02463 444 GKLTEEKEELEKQELkllKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGR 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 932 SAQKERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEElQQEARKAITEQKQKMRRLGSDLTSAQKEMKtkhKAYENAV 1011
Cdd:pfam02463 524 IISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEE-RQKLVRALTELPLGARKLRLLIPKLKLPLK---SIAVLEI 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1012 GILSRRLQEALAAKEAADAELGQLRAQGGSGDSSLA-LHERIQALEAELQAVShskTLLEKELQEVIALTSQELEESREK 1090
Cdd:pfam02463 600 DPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTkLKESAKAKESGLRKGV---SLEEGLAEKSEVKASLSELTKELL 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1091 VLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQ-SNAALREHNSILETALAKREADLVHLNLQVQAVLQ 1169
Cdd:pfam02463 677 EIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEeLLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSR 756
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1170 RKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQvaaakveaGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQ 1249
Cdd:pfam02463 757 LKKEEKEEEKSELSLKEKELAEEREKTEKLKVE--------EEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 828
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1250 IREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELE-- 1327
Cdd:pfam02463 829 KIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESqk 908
|
730 740
....*....|....*....|....*.
gi 1622847816 1328 GLQQLLQNVKSELEMAQEDLSMTQKD 1353
Cdd:pfam02463 909 LNLLEEKENEIEERIKEEAEILLKYE 934
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
368-1121 |
7.99e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.02 E-value: 7.99e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 368 SIKDVLQAAAAEHQDQGQEVNGEVRSRRESICSSVS-LESSAAETQEEMLQ--------------VLKEKMRLEGQLEAL 432
Cdd:TIGR02169 269 EIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIAsLERSIAEKERELEDaeerlakleaeidkLLAEIEELEREIEEE 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 433 SLEASQALKEKAELQAQLAAVSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNND 512
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 513 LQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQQMTALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQ--QQL 590
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEerVRG 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 591 ALAQEARVRLQGEMAHIQVGQMTQAG----------------------------LLEHLKLENVSLSQQLTETQHRSM-- 640
Cdd:TIGR02169 509 GRAVEEVLKASIQGVHGTVAQLGSVGeryataievaagnrlnnvvveddavakeAIELLKRRKAGRATFLPLNKMRDErr 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 641 -----KEKGRIAAQLQGIEADMLDQEAAFLQIQEakTMVEEDLQ--RRL-----------EEFE------GERERLQRMA 696
Cdd:TIGR02169 589 dlsilSEDGVIGFAVDLVEFDPKYEPAFKYVFGD--TLVVEDIEaaRRLmgkyrmvtlegELFEksgamtGGSRAPRGGI 666
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 697 DSAASLEQQLEQVKLTLLQRDQQLEALQQEhldlmkqltltqeaLQSREQSLDALQTHYDELQARLGELQGEAASREDTI 776
Cdd:TIGR02169 667 LFSRSEPAELQRLRERLEGLKRELSSLQSE--------------LRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEE 732
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 777 CLLQNEKIILEAALQAAKSGKEEfdrgarrleegteetsetlekLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQ 856
Cdd:TIGR02169 733 EKLKERLEELEEDLSSLEQEIEN---------------------VKSELKELEARIEELEEDLHKLEEALNDLEARLSHS 791
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 857 KVmveayrrdaTSKDQLISELKATRKRLDSELKELrqelmqvhgekraaEAELSRLHREAAQVRQQMADLeghlqsaQKE 936
Cdd:TIGR02169 792 RI---------PEIQAELSKLEEEVSRIEARLREI--------------EQKLNRLTLEKEYLEKEIQEL-------QEQ 841
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 937 RDEMethlqslqfdKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGsDLTSAQKEMKTKHKAYENAVGILSR 1016
Cdd:TIGR02169 842 RIDL----------KEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLG-DLKKERDELEAQLRELERKIEELEA 910
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1017 RLQEALAAKEAADAELGQLRAQGGSGDSSLALHERIQALEAELQAVSHSKTLLEKELQ---EVIALTSQELEESREKVLE 1093
Cdd:TIGR02169 911 QIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRalePVNMLAIQEYEEVLKRLDE 990
|
810 820 830
....*....|....*....|....*....|..
gi 1622847816 1094 LEDELQ----ESRGFRKKIKRLEESNKKLALE 1121
Cdd:TIGR02169 991 LKEKRAkleeERKAILERIEEYEKKKREVFME 1022
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
638-1341 |
1.04e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 66.92 E-value: 1.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 638 RSMKEKGRIAAQLQGIEADMLDQEAAFLQIQEAKTMVE-EDLQRRLEEFEGErERLQRMADSAASLEQQLEQVKLTLLQR 716
Cdd:TIGR00618 160 AKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAElLTLRSQLLTLCTP-CMPDTYHERKQVLEKELKHLREALQQT 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 717 DQQLEALQQEHLdlmkqltlTQEALQSREQSLDALQTHYDELQ---ARLGELQGEAASREDTICLLQNEKIILEAALQAA 793
Cdd:TIGR00618 239 QQSHAYLTQKRE--------AQEEQLKKQQLLKQLRARIEELRaqeAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQ 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 794 KSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQK-IKEQFLQQKVMVEAYRRDATSKDQ 872
Cdd:TIGR00618 311 RIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsIREISCQQHTLTQHIHTLQQQKTT 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 873 LISELKATRKRLDSELKE-------------LRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDE 939
Cdd:TIGR00618 391 LTQKLQSLCKELDILQREqatidtrtsafrdLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 940 METHLQSLQFDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLG--SDLTSAQKEMKTKHKAYENAVGILSRR 1017
Cdd:TIGR00618 471 REQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDnpGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1018 LQEALAAKEAADAELGQLRaqggsgDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDE 1097
Cdd:TIGR00618 551 LTSERKQRASLKEQMQEIQ------QSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPE 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1098 LQESRgfrkKIKRLEESNKKLALELEHEKGKLTGLGQSNaalrehnsILETALAKREADLVHLNlQVQAVLQRKEEEDRQ 1177
Cdd:TIGR00618 625 QDLQD----VRLHLQQCSQELALKLTALHALQLTLTQER--------VREHALSIRVLPKELLA-SRQLALQKMQSEKEQ 691
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1178 MKQLVQALQASLEKEKEKVNSLKEqvaaakveaghNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQ 1257
Cdd:TIGR00618 692 LTYWKEMLAQCQTLLRELETHIEE-----------YDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKART 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1258 EIaqfQAELAEARVQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQslkQQLDLTEQQGRKELEGLQQLLQNVK 1337
Cdd:TIGR00618 761 EA---HFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIG---QEIPSDEDILNLQCETLVQEEEQFL 834
|
....
gi 1622847816 1338 SELE 1341
Cdd:TIGR00618 835 SRLE 838
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
820-1347 |
1.16e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 1.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 820 KLREELAIKSGQVEHLQQEtatlKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVH 899
Cdd:PRK03918 211 EISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELK 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 900 GEKRAAEaELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELQQEARK-- 977
Cdd:PRK03918 287 ELKEKAE-EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELye 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 978 AITEQKQKMRRLGSDLTSAQKE-MKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRA-----QGGSGDSSLALHER 1051
Cdd:PRK03918 366 EAKAKKEELERLKKRLTGLTPEkLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKaieelKKAKGKCPVCGREL 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1052 IQALEAELQAVSHSK-TLLEKELQEVIALTSQELEESR--EKVLELEDELQESRGFRKKIKRLEESNKKLALE-LEHEKG 1127
Cdd:PRK03918 446 TEEHRKELLEEYTAElKRIEKELKEIEEKERKLRKELRelEKVLKKESELIKLKELAEQLKELEEKLKKYNLEeLEKKAE 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1128 KLTGLGQSNAALREHNSILETALAKREAdlvhLNLQVQAVLQRKEEEDRQMKQLVQALQaslEKEKEKVNSLKEQVAaaK 1207
Cdd:PRK03918 526 EYEKLKEKLIKLKGEIKSLKKELEKLEE----LKKKLAELEKKLDELEEELAELLKELE---ELGFESVEELEERLK--E 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1208 VEAGHNRrhvkaaSLELSEVKKELQAKEHLVQKLQAEADdlqiregKHSQEIAQFQAELAEARvqlqllqkqLDEQLSKQ 1287
Cdd:PRK03918 597 LEPFYNE------YLELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELR---------KELEELEK 654
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1288 PVGNQEMENLKWEVDQKEREIQSLkqqldlteqqgRKELEGLQQLLQNVKSELEMAQEDL 1347
Cdd:PRK03918 655 KYSEEEYEELREEYLELSRELAGL-----------RAELEELEKRREEIKKTLEKLKEEL 703
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
842-1370 |
1.42e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 1.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 842 LKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQ 921
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLER 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 922 QMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMK 1001
Cdd:TIGR02168 317 QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1002 TkhkayenavgiLSRRLQEALAAKEAADAELGQLRAQGGSGDSSLALHER--IQALEAELQAVSHSKTLLEKELQEVIAL 1079
Cdd:TIGR02168 397 S-----------LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELkeLQAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1080 TSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKL---ALELEHEKGKLTGLGQSNAAL----REHNSILETALAK 1152
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegVKALLKNQSGLSGILGVLSELisvdEGYEAAIEAALGG 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1153 READLVHLNLQVQAVLQRKEEEDRQMKQLVQALqaSLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAAS---------LE 1223
Cdd:TIGR02168 546 RLQAVVVENLNAAKKAIAFLKQNELGRVTFLPL--DSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPklrkalsylLG 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1224 LSEVKKELQAKEHLVQKLQAEA-----DDLQIREG---------------KHSQEIAQFQAELAEARVQLQLLQKQLDEQ 1283
Cdd:TIGR02168 624 GVLVVDDLDNALELAKKLRPGYrivtlDGDLVRPGgvitggsaktnssilERRREIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1284 LSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVK----------SELEMAQEDLSMTQKD 1353
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTeleaeieeleERLEEAEEELAEAEAE 783
|
570
....*....|....*..
gi 1622847816 1354 KFMLQAKVSELKNNMKT 1370
Cdd:TIGR02168 784 IEELEAQIEQLKEELKA 800
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
696-936 |
1.45e-10 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.79 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 696 ADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDT 775
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 776 ICLLQNEKIILEAALQaaksgkeefdRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQflq 855
Cdd:COG4942 99 LEAQKEELAELLRALY----------RLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL--- 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 856 qkvmVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQK 935
Cdd:COG4942 166 ----RAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
.
gi 1622847816 936 E 936
Cdd:COG4942 242 R 242
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
472-989 |
2.11e-10 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 65.71 E-value: 2.11e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 472 DSLSSEVDTLKqscwDLERAMTDLQNMLEAknaslassnndLQVAEEQYQRLVAKVEDMQ-----KSMLSKDN---TVHD 543
Cdd:COG4913 228 DALVEHFDDLE----RAHEALEDAREQIEL-----------LEPIRELAERYAAARERLAeleylRAALRLWFaqrRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 544 LRQQMTALQSQLQQVQLERATLTSKLKASQAEISSLQsvRQWYQ---QQLALAQEARVRLQGEMAHIQVGQMTQAGLLEH 620
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELE--AQIRGnggDRLEQLEREIERLERELEERERRRARLEALLAA 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 621 LKLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFLQIQEAKtmveEDLQRRLEEFEGERERL-QRMADSA 699
Cdd:COG4913 371 LGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRREL----RELEAEIASLERRKSNIpARLLALR 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 700 ASLEQQLE-------------QVK------------------LTLLQRDQQ----LEALQQEHLdlmkQLTLTQEALQSR 744
Cdd:COG4913 447 DALAEALGldeaelpfvgeliEVRpeeerwrgaiervlggfaLTLLVPPEHyaaaLRWVNRLHL----RGRLVYERVRTG 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 745 EQSLDALQTHYDELQARL--------GELQGEAASREDTIC------LLQNEKIILEAALqaAKSGKEEFDRGARRLEEG 810
Cdd:COG4913 523 LPDPERPRLDPDSLAGKLdfkphpfrAWLEAELGRRFDYVCvdspeeLRRHPRAITRAGQ--VKGNGTRHEKDDRRRIRS 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 811 T----EETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQF--LQQKVMVEAYRRDATSKDQLISELKATRKRL 884
Cdd:COG4913 601 RyvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERReaLQRLAEYSWDEIDVASAEREIAELEAELERL 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 885 D---SELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQS-LQFDKEQMVAVTEA 960
Cdd:COG4913 681 DassDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLeLRALLEERFAAALG 760
|
570 580
....*....|....*....|....*....
gi 1622847816 961 NEVLKKQIEELQQEARKAITEQKQKMRRL 989
Cdd:COG4913 761 DAVERELRENLEERIDALRARLNRAEEEL 789
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
826-1270 |
3.57e-10 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 64.79 E-value: 3.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 826 AIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAA 905
Cdd:COG4717 42 FIRAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 906 EAELsrlhrEAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMvavteanEVLKKQIEELQQEARKAITEQKQK 985
Cdd:COG4717 122 EKLL-----QLLPLYQELEALEAELAELPERLEELEERLEELRELEEEL-------EELEAELAELQEELEELLEQLSLA 189
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 986 MRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALA--AKEAADAELGQLRAQGGSGDSSLALHERIQALEAELQAVS 1063
Cdd:COG4717 190 TEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEelEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLL 269
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1064 HSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKI----KRLEESNKKLALELEHEKGKLTGLGQSNAAL 1139
Cdd:COG4717 270 SLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEeleeEELEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1140 REHNSILETalAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKA 1219
Cdd:COG4717 350 QELLREAEE--LEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDE 427
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*
gi 1622847816 1220 ASL--ELSEVKKELQAKEHLVQKLQAEADDL--QIREGKHSQEIAQFQAELAEAR 1270
Cdd:COG4717 428 EELeeELEELEEELEELEEELEELREELAELeaELEQLEEDGELAELLQELEELK 482
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
675-1351 |
3.78e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.75 E-value: 3.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 675 EEDLQRRLEEFEGERERLQRMADSAASL-EQQLEQVKLTLLQRDQQLEALQQEHlDLMKQLTLTQEalQSREQSLDALQT 753
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELhEKQKFYLRQSVIDLQTKLQEMQMER-DAMADIRRRES--QSQEDLRNQLQN 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 754 HYDELQArlGELQGEAASREDTICLLQNEKIIL--EAALQAAK---------SGKEEFDRGARRLEEGTEETSETLEKLR 822
Cdd:pfam15921 150 TVHELEA--AKCLKEDMLEDSNTQIEQLRKMMLshEGVLQEIRsilvdfeeaSGKKIYEHDSMSTMHFRSLGSAISKILR 227
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 823 E---ELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKvmveayrrdATSKDQLISElkatrkrldselkelrqelmqvh 899
Cdd:pfam15921 228 EldtEISYLKGRIFPVEDQLEALKSESQNKIELLLQQH---------QDRIEQLISE----------------------- 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 900 gekraAEAELSRLHREAAQVRQQMADLEGHLQSAQKE-RDEMETHLQSLQfDKEQMVAVteanevLKKQIEELQQEARKA 978
Cdd:pfam15921 276 -----HEVEITGLTEKASSARSQANSIQSQLEIIQEQaRNQNSMYMRQLS-DLESTVSQ------LRSELREAKRMYEDK 343
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 979 ITEQKQKMRRLGSDLTsaqkEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQG------GSGDSSLALHER- 1051
Cdd:pfam15921 344 IEELEKQLVLANSELT----EARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNkrlwdrDTGNSITIDHLRr 419
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1052 --------IQALEAELQAV-SHSKTLLEKELQEVialtsQELEESREKVLELEDELQESRGFRKKIKRlEESNKKLALEL 1122
Cdd:pfam15921 420 elddrnmeVQRLEALLKAMkSECQGQMERQMAAI-----QGKNESLEKVSSLTAQLESTKEMLRKVVE-ELTAKKMTLES 493
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1123 EHEKgkltgLGQSNAALREHNSILETALAKREADLVHLNLQVQAVLQRKEEED--RQMKQLVQALQASLEKEKEKVNSLK 1200
Cdd:pfam15921 494 SERT-----VSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDhlRNVQTECEALKLQMAEKDKVIEILR 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1201 EQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKehlvqklQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQL 1280
Cdd:pfam15921 569 QQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDR-------RLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAG 641
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847816 1281 DEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQ 1351
Cdd:pfam15921 642 SERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTR 712
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
795-1123 |
6.24e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 6.24e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 795 SGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETAT-LKKQTQKIKEQFLQQKVMVEAYRRDATSKDQL 873
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKaERYQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 874 ISELKATRK---RLDSELKELRQELMQVHGEKRAAEAELSRL-HREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQ- 948
Cdd:TIGR02169 243 ERQLASLEEeleKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEe 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 949 ---FDKEQMVAVTEANEVLKKQIEELQQEARK---AITEQKQKMRRLGSDLTSAQKEMKT---KHKAYENAVGILSRRLQ 1019
Cdd:TIGR02169 323 rlaKLEAEIDKLLAEIEELEREIEEERKRRDKlteEYAELKEELEDLRAELEEVDKEFAEtrdELKDYREKLEKLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1020 EALAAKEAADAELGQLRAQGGSgdsslaLHERIQALEAELQAVSHSKtlleKELQEVIALTSQELEESREKvleLEDELQ 1099
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELAD------LNAAIAGIEAKINELEEEK----EDKALEIKKQEWKLEQLAAD---LSKYEQ 469
|
330 340
....*....|....*....|....
gi 1622847816 1100 ESRGFRKKIKRLEESNKKLALELE 1123
Cdd:TIGR02169 470 ELYDLKEEYDRVEKELSKLQRELA 493
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
416-1118 |
6.31e-10 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 64.22 E-value: 6.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 416 LQVLKEKMRLEGQLEALSLEAS----------QALKEKAELQAQLAAVSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSC 485
Cdd:TIGR00618 183 LMEFAKKKSLHGKAELLTLRSQlltlctpcmpDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 486 WDLERAMTDLQNMLEAknaslassnNDLQVAEEQYQRLVAKVEDMQKSmlskdntVHDLRQQMTALQSQLQQVQLERATL 565
Cdd:TIGR00618 263 KQLRARIEELRAQEAV---------LEETQERINRARKAAPLAAHIKA-------VTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 566 TSKLKASQAEISSLQSVRQWYQQqlALAQEARVRLQGEmahiqvgqmTQAGLLEHlklenvsLSQQLTETQH-RSMKEKG 644
Cdd:TIGR00618 327 LMKRAAHVKQQSSIEEQRRLLQT--LHSQEIHIRDAHE---------VATSIREI-------SCQQHTLTQHiHTLQQQK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 645 RIAAQLQGIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQ 724
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR---YAELCAAAITCTAQCEKLEKIHLQESA 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 725 QEhLDLMKQLTLTQEALQSREQSLDALQTHydelqaRLGELQGEAASREDTiCLLQNEKIILEAALQAAKSGKEEFDRGA 804
Cdd:TIGR00618 466 QS-LKEREQQLQTKEQIHLQETRKKAVVLA------RLLELQEEPCPLCGS-CIHPNPARQDIDNPGPLTRRMQRGEQTY 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 805 RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYR----RDATSKDQLISELKAT 880
Cdd:TIGR00618 538 AQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQdlteKLSEAEDMLACEQHAL 617
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 881 RKRLDSEL--KELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADL------EGHLQSAQKERDEMETHLQSLQFDKE 952
Cdd:TIGR00618 618 LRKLQPEQdlQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALsirvlpKELLASRQLALQKMQSEKEQLTYWKE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 953 Q-------MVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAK 1025
Cdd:TIGR00618 698 MlaqcqtlLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTG 777
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1026 EAADAELGQLR-----AQGGSGDSSLALHERIQALEAELQAVSHSKTLLEKELQEV---IALTSQELEESREKVLELEDE 1097
Cdd:TIGR00618 778 AELSHLAAEIQffnrlREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFlsrLEEKSATLGEITHQLLKYEEC 857
|
730 740
....*....|....*....|.
gi 1622847816 1098 LQESRGFRKKIKRLEESNKKL 1118
Cdd:TIGR00618 858 SKQLAQLTQEQAKIIQLSDKL 878
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
675-1209 |
8.08e-10 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 63.54 E-value: 8.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 675 EEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTH 754
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 755 YDELQARLGELQgEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKL---REELAIKSGQ 831
Cdd:PRK03918 268 IEELKKEIEELE-EKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELeekEERLEELKKK 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 832 VEHLQQETATLKKQTQKIkEQFLQQKVMVEAYRRDAT--SKDQLISELKATRKR---LDSELKELRQ---ELMQVHGEKR 903
Cdd:PRK03918 347 LKELEKRLEELEERHELY-EEAKAKKEELERLKKRLTglTPEKLEKELEELEKAkeeIEEEISKITArigELKKEIKELK 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 904 AAEAEL-----------------------SRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQS---LQFDKEQMVAV 957
Cdd:PRK03918 426 KAIEELkkakgkcpvcgrelteehrkellEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKeseLIKLKELAEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 958 TEANEVLKK-QIEELQQEARKAiTEQKQKMRRLGSDLTSAQKEMKtKHKAYENAVGILSRRLQealAAKEAADAELGQLR 1036
Cdd:PRK03918 506 KELEEKLKKyNLEELEKKAEEY-EKLKEKLIKLKGEIKSLKKELE-KLEELKKKLAELEKKLD---ELEEELAELLKELE 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1037 AQGGSgdSSLALHERIQALEA---ELQAVSHSKTLLEKELQEvIALTSQELEESREKVLELEDELQESRgfrkkiKRLEE 1113
Cdd:PRK03918 581 ELGFE--SVEELEERLKELEPfynEYLELKDAEKELEREEKE-LKKLEEELDKAFEELAETEKRLEELR------KELEE 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1114 SNKKLALElEHEK--GKLTGLGQSNAALREHNSILETALAKREADLVHLNLQVQAvLQRKEEEDRQMKQLVQALQASLEK 1191
Cdd:PRK03918 652 LEKKYSEE-EYEElrEEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEE-REKAKKELEKLEKALERVEELREK 729
|
570
....*....|....*...
gi 1622847816 1192 EKEKVNSLKEQvAAAKVE 1209
Cdd:PRK03918 730 VKKYKALLKER-ALSKVG 746
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
377-1268 |
1.28e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 63.14 E-value: 1.28e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 377 AAEHQDQGQEVNGEVRSRRESICSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAVSTK 456
Cdd:TIGR00606 219 ACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQG 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 457 LQAQVECSHSSQQRQDSlssevdtlkqscwDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQKSMLS 536
Cdd:TIGR00606 299 TDEQLNDLYHNHQRTVR-------------EKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 537 KDNTVHDL--RQQMTALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAhiqvgqmtq 614
Cdd:TIGR00606 366 RDSLIQSLatRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKK--------- 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 615 aGLLEHLKLENVSLSQQLTETQHrsmkekgrIAAQLQGIEADMLDqeaaFLQIQEAKTMVEEDLQRRLEEFEGERERLQR 694
Cdd:TIGR00606 437 -GLGRTIELKKEILEKKQEELKF--------VIKELQQLEGSSDR----ILELDQELRKAERELSKAEKNSLTETLKKEV 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 695 MadsaaSLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAaSRED 774
Cdd:TIGR00606 504 K-----SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKK-QLED 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 775 TICLLQNEKIILEAAL-------QAAKSGKEEFDRGARRLEEGTEE-------------TSETLEKLREELAIKSGQVEH 834
Cdd:TIGR00606 578 WLHSKSKEINQTRDRLaklnkelASLEQNKNHINNELESKEEQLSSyedklfdvcgsqdEESDLERLKEEIEKSSKQRAM 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 835 LQQETATLKKQTQKIKEQ------FLQQKVMVEAYRRDATSKDQLISELKATR-KRLDSELKELRQELMQVHGEKRAAEA 907
Cdd:TIGR00606 658 LAGATAVYSQFITQLTDEnqsccpVCQRVFQTEAELQEFISDLQSKLRLAPDKlKSTESELKKKEKRRDEMLGLAPGRQS 737
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 908 ELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQfDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMR 987
Cdd:TIGR00606 738 IIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIM-PEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQ 816
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 988 rlGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSGDSslalhERIQALEAELQAVSHSKT 1067
Cdd:TIGR00606 817 --GSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKS-----EKLQIGTNLQRRQQFEEQ 889
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1068 LLE--KELQEVIALTSQELEESREKVLELEDELQESRgfrKKIKRLEESNKKLALELEHEKGKLTGL-GQSNAALREHNS 1144
Cdd:TIGR00606 890 LVElsTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE---ELISSKETSNKKAQDKVNDIKEKVKNIhGYMKDIENKIQD 966
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1145 ILETALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKE---KEKVNSLKEQVAAAKVEAGHNRRHVKAAS 1221
Cdd:TIGR00606 967 GKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQErwlQDNLTLRKRENELKEVEEELKQHLKEMGQ 1046
|
890 900 910 920
....*....|....*....|....*....|....*....|....*..
gi 1622847816 1222 LELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAE 1268
Cdd:TIGR00606 1047 MQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
703-1252 |
2.23e-09 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 62.50 E-value: 2.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 703 EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSR-------EQSLDALQTHYDELQARLGELQGEAASREDT 775
Cdd:pfam01576 11 EEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQAEtelcaeaEEMRARLAARKQELEEILHELESRLEEEEER 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 776 ICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQ 855
Cdd:pfam01576 91 SQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 856 QKVMVEAYRRDATSKDQLISELKATRKRLDselkELRQELMQVhgeKRAAEAELSRLHREAAQVRQQMADLEGHLqsaQK 935
Cdd:pfam01576 171 EEEKAKSLSKLKNKHEAMISDLEERLKKEE----KGRQELEKA---KRKLEGESTDLQEQIAELQAQIAELRAQL---AK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 936 ERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELQQ--EARKAITEQKQKMRR-LGSDL-------------TSAQKE 999
Cdd:pfam01576 241 KEEELQAALARLEEETAQKNNALKKIRELEAQISELQEdlESERAARNKAEKQRRdLGEELealkteledtldtTAAQQE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1000 MKTKHkayENAVGILSRRLQEALAAKEAADAELGQLRAQggsgdSSLALHERIQALEAELQAVSHSKTLLEKE---LQEV 1076
Cdd:pfam01576 321 LRSKR---EQEVTELKKALEEETRSHEAQLQEMRQKHTQ-----ALEELTEQLEQAKRNKANLEKAKQALESEnaeLQAE 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1077 IALTSQELEESREKVLELEDELQE-----SRGFRKKIKRLEESNkKLALELEHEKGKLtglgqsnaalrehnSILETALA 1151
Cdd:pfam01576 393 LRTLQQAKQDSEHKRKKLEGQLQElqarlSESERQRAELAEKLS-KLQSELESVSSLL--------------NEAEGKNI 457
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1152 KREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQAsLEKEKekvNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKEL 1231
Cdd:pfam01576 458 KLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQ-LEDER---NSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
570 580
....*....|....*....|....*...
gi 1622847816 1232 Q-------AKEHLVQKLQAEADDLQIRE 1252
Cdd:pfam01576 534 EedagtleALEEGKKRLQRELEALTQQL 561
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
778-1369 |
3.85e-09 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 61.53 E-value: 3.85e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 778 LLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQK 857
Cdd:pfam02463 185 LAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 858 VMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELmqvhgekRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKER 937
Cdd:pfam02463 265 EKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSEL-------LKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEI 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 938 DEMETHLQSLQFDKEQMvavTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRR 1017
Cdd:pfam02463 338 EELEKELKELEIKREAE---EEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELA 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1018 LQEALAAKEAADAELGQLRAQGGSGDSSLAlHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDE 1097
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQG-KLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1098 LQESRGFRKKIKRlEESNKKLALELEHEKGKLTGLGQSNAALREhnsILETALAKRE-ADLVHLNLQVQAVLQRKEEEDR 1176
Cdd:pfam02463 494 KLEERSQKESKAR-SGLKVLLALIKDGVGGRIISAHGRLGDLGV---AVENYKVAIStAVIVEVSATADEVEERQKLVRA 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1177 QMKQLVQALQASLEKEKEKVN---SLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREG 1253
Cdd:pfam02463 570 LTELPLGARKLRLLIPKLKLPlksIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLR 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1254 K-HSQEIAQFQAELAEARVQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQL 1332
Cdd:pfam02463 650 KgVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQE 729
|
570 580 590 600
....*....|....*....|....*....|....*....|....*
gi 1622847816 1333 LQNV--------KSELEMAQEDLSMTQKDKFMLQAKVSELKNNMK 1369
Cdd:pfam02463 730 AQDKineelkllKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEK 774
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
733-1365 |
4.07e-09 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 61.60 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 733 QLTLTQEALQSREQSLDAL---QTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEfdrgarRLEE 809
Cdd:TIGR00606 232 QLESSREIVKSYENELDPLknrLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDE------QLND 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 810 GTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKatrkrLDSELK 889
Cdd:TIGR00606 306 LYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLA-----TRLELD 380
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 890 ELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKE-QMVAVTEANEVLKKQI 968
Cdd:TIGR00606 381 GFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIElKKEILEKKQEELKFVI 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 969 EELQQ--EARKAITEQKQKMRRLGSDLTSAQKE-----MKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGS 1041
Cdd:TIGR00606 461 KELQQleGSSDRILELDQELRKAERELSKAEKNsltetLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEML 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1042 GDSSLALHERIQALEAElqavsHSKTLL--------EKELQEVIALTSQELEESREKVLELEDELQESRG----FRKKIK 1109
Cdd:TIGR00606 541 TKDKMDKDEQIRKIKSR-----HSDELTsllgyfpnKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQnknhINNELE 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1110 RLEESNKKLALEL------EHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLNLQVQA---VLQRKEEEDRQMKQ 1180
Cdd:TIGR00606 616 SKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSccpVCQRVFQTEAELQE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1181 LVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIA 1260
Cdd:TIGR00606 696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLG 775
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1261 QFQAELAEARVQLQLLQKqldeqlskqpvgnqeMENLKWEVDQKEREIQSLKQQL-----DLTEQQGRKELEGLQQLLQN 1335
Cdd:TIGR00606 776 TIMPEEESAKVCLTDVTI---------------MERFQMELKDVERKIAQQAAKLqgsdlDRTVQQVNQEKQEKQHELDT 840
|
650 660 670
....*....|....*....|....*....|
gi 1622847816 1336 VKSELEMAQEDLSMTQKDKFMLQAKVSELK 1365
Cdd:TIGR00606 841 VVSKIELNRKLIQDQQEQIQHLKSKTNELK 870
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
622-1252 |
5.57e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 61.31 E-value: 5.57e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 622 KLENVSLSQQLTETQHRSMKEKGRIAAQLQGIEADMLDQEA----AFLQIQEAKTMVEEdlQRRLEEFEGERERLQRMAD 697
Cdd:PTZ00121 1183 KAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAkkaeAVKKAEEAKKDAEE--AKKAEEERNNEEIRKFEEA 1260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 698 SAASLEQQLEQVKLTLLQRDQQL----EALQQEHLDLMKQLTLTQEALQSREQSLDAlqthyDELQARLGELQGEAASRE 773
Cdd:PTZ00121 1261 RMAHFARRQAAIKAEEARKADELkkaeEKKKADEAKKAEEKKKADEAKKKAEEAKKA-----DEAKKKAEEAKKKADAAK 1335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 774 DTIcllQNEKIILEAALQAAKSGKEEFDRgARRLEEGTEETSETLEKLREELAIKSGQV---EHLQQETATLKKQTQKIK 850
Cdd:PTZ00121 1336 KKA---EEAKKAAEAAKAEAEAAADEAEA-AEEKAEAAEKKKEEAKKKADAAKKKAEEKkkaDEAKKKAEEDKKKADELK 1411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 851 EQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQV-HGEKRAAEAELSRLHREAAQVRQQMADLEGH 929
Cdd:PTZ00121 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAeEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 930 LQSAQKERDEMETHLQSLQFDKEQMVA--VTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKH-KA 1006
Cdd:PTZ00121 1492 AEEAKKKADEAKKAAEAKKKADEAKKAeeAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEaKK 1571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1007 YENAVGILSRRLQEALAAKEAADAELGQLRAQGGSGDSSlalheriQALEAELQAVSHSKTLLEKELQEVIALTSQELEE 1086
Cdd:PTZ00121 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE-------EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1087 SREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETaLAKREADLVHLNLQVqa 1166
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE-LKKKEAEEKKKAEEL-- 1721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1167 vlqRKEEEDRQMKqlVQALQASLEKEKEKVNSlkeqvaaAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEAD 1246
Cdd:PTZ00121 1722 ---KKAEEENKIK--AEEAKKEAEEDKKKAEE-------AKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEED 1789
|
....*.
gi 1622847816 1247 DLQIRE 1252
Cdd:PTZ00121 1790 EKRRME 1795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
860-1346 |
5.63e-09 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 61.08 E-value: 5.63e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 860 VEAYRRDATSKDQLISELKATRKRLDSELKELRQELmqvhgekraAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDE 939
Cdd:COG4913 257 IRELAERYAAARERLAELEYLRAALRLWFAQRRLEL---------LEAELEELRAELARLEAELERLEARLDALREELDE 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 940 METHLQSLQFDKEqmvavteanEVLKKQIEELQQEARK---AITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSR 1016
Cdd:COG4913 328 LEAQIRGNGGDRL---------EQLEREIERLERELEErerRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1017 RLQEALAAKEAADAELGQLRaqggsgdsslalhERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKV----- 1091
Cdd:COG4913 399 ELEALEEALAEAEAALRDLR-------------RELRELEAEIASLERRKSNIPARLLALRDALAEALGLDEAELpfvge 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1092 -LELEDE-------------------------------------------LQESRGFRKKIKRLEESNKKLALELEHEKG 1127
Cdd:COG4913 466 lIEVRPEeerwrgaiervlggfaltllvppehyaaalrwvnrlhlrgrlvYERVRTGLPDPERPRLDPDSLAGKLDFKPH 545
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1128 K--------------------------------LTGLGQSNAALREHN--------SIL----ETALAKREADLVHLNLQ 1163
Cdd:COG4913 546 PfrawleaelgrrfdyvcvdspeelrrhpraitRAGQVKGNGTRHEKDdrrrirsrYVLgfdnRAKLAALEAELAELEEE 625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1164 VQAVLQRKEEEDRQMKQLVQALQA-----SLEKEKEKVNSLKEQVAAAKVEaghnRRHVKAASLELSEVKKELQAKEHLV 1238
Cdd:COG4913 626 LAEAEERLEALEAELDALQERREAlqrlaEYSWDEIDVASAEREIAELEAE----LERLDASSDDLAALEEQLEELEAEL 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1239 QKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQLskqpvgNQEMENLKWEVDQKEREiQSLKQQLdlt 1318
Cdd:COG4913 702 EELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL------RALLEERFAAALGDAVE-RELRENL--- 771
|
570 580
....*....|....*....|....*...
gi 1622847816 1319 eqqgRKELEGLQQLLQNVKSELEMAQED 1346
Cdd:COG4913 772 ----EERIDALRARLNRAEEELERAMRA 795
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
564-1122 |
8.69e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 60.44 E-value: 8.69e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 564 TLTSKLKASQAEISSLQSVRQWYQQQLALAQ-------EARVRLQGEMAHIQVGQMTQAGLLEhlklENVSLSQQLTETQ 636
Cdd:PRK02224 210 GLESELAELDEEIERYEEQREQARETRDEADevleeheERREELETLEAEIEDLRETIAETER----EREELAEEVRDLR 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 637 HRSMKEKGRIAAQLQGIEADMLDQEAAFLQIQEAKTMVEE----------DLQRRLEEFEGERE-------RLQRMADSA 699
Cdd:PRK02224 286 ERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEElrdrleecrvAAQAHNEEAESLREdaddleeRAEELREEA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 700 ASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIcll 779
Cdd:PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV--- 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 780 qNEKIILEAALQAAKSGKEEFDRGarrleegteetsetlekLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVM 859
Cdd:PRK02224 443 -EEAEALLEAGKCPECGQPVEGSP-----------------HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDL 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 860 VEAYRRDATSKD------QLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGhlqsa 933
Cdd:PRK02224 505 VEAEDRIERLEErredleELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNS----- 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 934 qkERDEMETHLQSLQFDKEQMVAVTEANEvlkkQIEELQqEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKayENAVGI 1013
Cdd:PRK02224 580 --KLAELKERIESLERIRTLLAAIADAED----EIERLR-EKREALAELNDERRERLAEKRERKRELEAEFD--EARIEE 650
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1014 LSRRLQEALAAKEAADAELGQLRAQGGSgdsslaLHERIQALEAELQavshsktllekelqevialtsqELEESREKVLE 1093
Cdd:PRK02224 651 AREDKERAEEYLEQVEEKLDELREERDD------LQAEIGAVENELE----------------------ELEELRERREA 702
|
570 580
....*....|....*....|....*....
gi 1622847816 1094 LEDELQESRGFRKKIKRLEESNKKLALEL 1122
Cdd:PRK02224 703 LENRVEALEALYDEAEELESMYGDLRAEL 731
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
765-1348 |
4.31e-08 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 58.31 E-value: 4.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 765 LQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELaikSGQVEHLQQETATLKK 844
Cdd:pfam12128 246 LQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDEL---NGELSAADAAVAKDRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 845 QTQKIKEQFLQ-QKVMVEAYRRDATSKDQLISELKATRKRLDSeLKELRQELMQVHGEKRAA-----EAELSRLHREAAQ 918
Cdd:pfam12128 323 ELEALEDQHGAfLDADIETAAADQEQLPSWQSELENLEERLKA-LTGKHQDVTAKYNRRRSKikeqnNRDIAGIKDKLAK 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 919 VRQ----QMADLEGHLQSAQKE-RDEMETHLQSLQFDKEQM----------VAVTEANEVLKKQIEELQQEARKAITEQK 983
Cdd:pfam12128 402 IREardrQLAVAEDDLQALESElREQLEAGKLEFNEEEYRLksrlgelklrLNQATATPELLLQLENFDERIERAREEQE 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 984 QKMRRLgSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAelgQLRAQGGS---------------------- 1041
Cdd:pfam12128 482 AANAEV-ERLQSELRQARKRRDQASEALRQASRRLEERQSALDELEL---QLFPQAGTllhflrkeapdweqsigkvisp 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1042 ------------GDSSLALHERIQALEAELQAVSHSKTL-LEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKI 1108
Cdd:pfam12128 558 ellhrtdldpevWDGSVGGELNLYGVKLDLKRIDVPEWAaSEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1109 KRLEESNKKLALELEHEKGKLTGLGQS-----NAALREHNSILETALAKREADLVHLNLQVQAVLQRKEEEDRQMK-QLV 1182
Cdd:pfam12128 638 SREETFARTALKNARLDLRRLFDEKQSekdkkNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARtEKQ 717
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1183 QALQASLEKEKEKVNSLKEQVAAAKVEAghnRRHVKAASlelSEVKKELQAKehlvqklqaeaDDLQIREGKHSQEIAQF 1262
Cdd:pfam12128 718 AYWQVVEGALDAQLALLKAAIAARRSGA---KAELKALE---TWYKRDLASL-----------GVDPDVIAKLKREIRTL 780
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1263 QAELAEARVQLQLLQKQLDEQLSKQPvgnQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEM 1342
Cdd:pfam12128 781 ERKIERIAVRRQEVLRYFDWYQETWL---QRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVR 857
|
....*.
gi 1622847816 1343 AQEDLS 1348
Cdd:pfam12128 858 LSENLR 863
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
405-1269 |
6.80e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.49 E-value: 6.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 405 ESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAVSTKLQAQVECSHSSQQRQDSLSSEVDTLKQS 484
Cdd:pfam01576 186 EAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKK 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 485 CWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQKSMlskdNTVHDLRQQMTALQSQLQQVQLERAT 564
Cdd:pfam01576 266 IRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTT----AAQQELRSKREQEVTELKKALEEETR 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 565 ltsklkasqAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQLTETQHRsmkeKG 644
Cdd:pfam01576 342 ---------SHEAQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAELRTLQQAKQDSEHK----RK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 645 RIAAQLQGIEADMLDQEAAFLQIQE--AKTMVE-EDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQ-- 719
Cdd:pfam01576 409 KLEGQLQELQARLSESERQRAELAEklSKLQSElESVSSLLNEAEGKNIKLSK---DVSSLESQLQDTQELLQEETRQkl 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 720 -----LEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEkiiLEAALQAAK 794
Cdd:pfam01576 486 nlstrLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRE---LEALTQQLE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 795 SGKEEFDRGARrleegteetseTLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRD-------- 866
Cdd:pfam01576 563 EKAAAYDKLEK-----------TKNRLQQELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEErdraeaea 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 867 ------ATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAA-----EAELSR--LHREAAQVRQQMADLEGHLQSA 933
Cdd:pfam01576 632 reketrALSLARALEEALEAKEELERTNKQLRAEMEDLVSSKDDVgknvhELERSKraLEQQVEEMKTQLEELEDELQAT 711
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 934 QKERDEMETHLQSL--QFDKEqMVAVTEANE----VLKKQIEELQ---QEARKAITEQKQKMRRLGSDLTSAQKEMKTKH 1004
Cdd:pfam01576 712 EDAKLRLEVNMQALkaQFERD-LQARDEQGEekrrQLVKQVRELEaelEDERKQRAQAVAAKKKLELDLKELEAQIDAAN 790
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1005 KAYENAVGILsRRLQEALAAKEAADAELGQLRAQGGSgdSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQEL 1084
Cdd:pfam01576 791 KGREEAVKQL-KKLQAQMKDLQRELEEARASRDEILA--QSKESEKKLKNLEAELLQLQEDLAASERARRQAQQERDELA 867
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1085 EESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLNLQV 1164
Cdd:pfam01576 868 DEIASGASGKSALQDEKRRLEARIAQLEEELEEEQSNTELLNDRLRKSTLQVEQLTTELAAERSTSQKSESARQQLERQN 947
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1165 QAVLQRKEEEDRQMKQLVQALQASLEKekeKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQ--KLQ 1242
Cdd:pfam01576 948 KELKAKLQEMEGTVKSKFKSSIAALEA---KIAQLEEQLEQESRERQAANKLVRRTEKKLKEVLLQVEDERRHADqyKDQ 1024
|
890 900
....*....|....*....|....*..
gi 1622847816 1243 AEADDLQIREGKHSQEIAQFQAELAEA 1269
Cdd:pfam01576 1025 AEKGNSRMKQLKRQLEEAEEEASRANA 1051
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
518-1185 |
1.21e-07 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 56.52 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 518 EQYQRLVAKVEDMQKSMLSKDNTVHDLRQQMTALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLALAQEAR 597
Cdd:TIGR00618 176 DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 598 VRLQGEMAHIQVGQMTQAGLLEHLKLENVSLSQQltetqhrsmKEKGRIAAQLQGIEADMLDQEAAFLQIQEAKTMVEED 677
Cdd:TIGR00618 256 LKKQQLLKQLRARIEELRAQEAVLEETQERINRA---------RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKL 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 678 LQRRLE------EFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHlDLMKQLTLTQEALQSREQ---SL 748
Cdd:TIGR00618 327 LMKRAAhvkqqsSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIH-TLQQQKTTLTQKLQSLCKeldIL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 749 DALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAA----LQAAKSGKEEFDRGARRLEEGTEETSETLEKLREE 824
Cdd:TIGR00618 406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAitctAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 825 LAIKS--GQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEK 902
Cdd:TIGR00618 486 TRKKAvvLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQM 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 903 RAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQfdkeqmvavtEANEVLKKQIEELQQEARKAITEQ 982
Cdd:TIGR00618 566 QEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLA----------CEQHALLRKLQPEQDLQDVRLHLQ 635
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 983 kQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSGDSSlALHERIQALEAELQAV 1062
Cdd:TIGR00618 636 -QCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKE-MLAQCQTLLRELETHI 713
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1063 SHSKTLLEkELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKG-KLTGLGQSNAALRE 1141
Cdd:TIGR00618 714 EEYDREFN-EIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGaELSHLAAEIQFFNR 792
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 1622847816 1142 HNSILETALAKREA--------DLVHLNLQVQAVLQRKEEEDRQMKQLVQAL 1185
Cdd:TIGR00618 793 LREEDTHLLKTLEAeigqeipsDEDILNLQCETLVQEEEQFLSRLEEKSATL 844
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
410-1148 |
1.47e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 1.47e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 410 ETQEEMLQVLKEKMRLEGQLEALSLEAsqALKEKAELQAQLAAVS---TKLQAQVecshssQQRQDSLSSEVDTLKQSCW 486
Cdd:TIGR02169 208 EKAERYQALLKEKREYEGYELLKEKEA--LERQKEAIERQLASLEeelEKLTEEI------SELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 487 DLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRlvaKVEDMQKSMLSKDNTVHDLRQQMTALQSQLQQVQLERATLT 566
Cdd:TIGR02169 280 KIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER---ELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 567 SKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEmahiqvgqmtqaglLEHLKLENVSLSQqlteTQHRSMKEKGRI 646
Cdd:TIGR02169 357 EEYAELKEELEDLRAELEEVDKEFAETRDELKDYREK--------------LEKLKREINELKR----ELDRLQEELQRL 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 647 AAQLQGIEADMLDQEAAFLQIQEAKtmveEDLQRRLEEFEGERERLQRMADSAaslEQQLEQVKLTLLQRDQQLEALQQE 726
Cdd:TIGR02169 419 SEELADLNAAIAGIEAKINELEEEK----EDKALEIKKQEWKLEQLAADLSKY---EQELYDLKEEYDRVEKELSKLQRE 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 727 HLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQG---------EAAS--------------REDTICLLQNEK 783
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSvgeryataiEVAAgnrlnnvvveddavAKEAIELLKRRK 571
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 784 I---------------------------------------------------ILEAALQAAKSGKEEF------------ 800
Cdd:TIGR02169 572 AgratflplnkmrderrdlsilsedgvigfavdlvefdpkyepafkyvfgdtLVVEDIEAARRLMGKYrmvtlegelfek 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 801 -------DRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQL 873
Cdd:TIGR02169 652 sgamtggSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQE 731
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 874 ISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLE------------GHLQSAQKERDEME 941
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEarlshsripeiqAELSKLEEEVSRIE 811
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 942 THLQSLQFDKEqmvAVTEANEVLKKQIEELQQEaRKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEA 1021
Cdd:TIGR02169 812 ARLREIEQKLN---RLTLEKEYLEKEIQELQEQ-RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1022 LAAKEAADAELGQLRAQGGSGDSSL-ALHERIQALEAELQAVSHSKTLLEKELqevialtsQELEESREKVLELEDELQE 1100
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEELEAQIeKKRKRLSELKAKLEALEEELSEIEDPK--------GEDEEIPEEELSLEDVQAE 959
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 1622847816 1101 SRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAAL-REHNSILET 1148
Cdd:TIGR02169 960 LQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLeEERKAILER 1008
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
550-773 |
1.76e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.76e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 550 ALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKLENVSLS 629
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 630 QQLTETQHRSMKEKGRIAAQLQGIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQV 709
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622847816 710 KLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASRE 773
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
662-924 |
1.87e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.16 E-value: 1.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 662 AAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEAL 741
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 742 QSREQSLDALQthyDELQARLGELQgeAASREDTICLLQNekiileaalqaaksgKEEFDRGARRLEEgteetsetlekL 821
Cdd:COG4942 93 AELRAELEAQK---EELAELLRALY--RLGRQPPLALLLS---------------PEDFLDAVRRLQY-----------L 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 822 REELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGE 901
Cdd:COG4942 142 KYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
250 260
....*....|....*....|...
gi 1622847816 902 KRAAEAELSRLHREAAQVRQQMA 924
Cdd:COG4942 222 AEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
653-1365 |
2.06e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 2.06e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 653 IEADMLDQEAAFLQIQEAKTMVEEDLQRrLEEFEGERERLQRMADsaasLEQQLEQVKLTLLQRdqqlealqqEHLDLMK 732
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQ-LERLRREREKAERYQA----LLKEKREYEGYELLK---------EKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 733 QLTLTQEALQSREQSLDALQTHYDELQARLGELqgeaasredticllqnEKIILEAALQAAKSGKEEFDRgarrleegte 812
Cdd:TIGR02169 238 QKEAIERQLASLEEELEKLTEEISELEKRLEEI----------------EQLLEELNKKIKDLGEEEQLR---------- 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 813 etsetlekLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELR 892
Cdd:TIGR02169 292 --------VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELK 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 893 QELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELQ 972
Cdd:TIGR02169 364 EELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEK 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 973 QEARKAITEQKQKMRRLGSDLTSAQKEmktkHKAYENAVGILSRRLQealaakeaadaelgqlraqggsgdsslALHERI 1052
Cdd:TIGR02169 444 EDKALEIKKQEWKLEQLAADLSKYEQE----LYDLKEEYDRVEKELS---------------------------KLQREL 492
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1053 QALEAELQAVSHS-------KTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFrkkIKRLEESNKKLALEL--E 1123
Cdd:TIGR02169 493 AEAEAQARASEERvrggravEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGNRLNN---VVVEDDAVAKEAIELlkR 569
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1124 HEKGKLT--GLGQSNAALREHNSILETALAKREADLVHLNLQVQA----------VLQRKEEEDRQMkqlVQALQASLEK 1191
Cdd:TIGR02169 570 RKAGRATflPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPafkyvfgdtlVVEDIEAARRLM---GKYRMVTLEG 646
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1192 EkekvnsLKEQVAAakVEAGHNRRhvKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARv 1271
Cdd:TIGR02169 647 E------LFEKSGA--MTGGSRAP--RGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS- 715
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1272 qlqllqkqldeqlskqpvgnqemenlkwevdQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDLSMTQ 1351
Cdd:TIGR02169 716 -------------------------------RKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELE 764
|
730
....*....|....
gi 1622847816 1352 KDKFMLQAKVSELK 1365
Cdd:TIGR02169 765 ARIEELEEDLHKLE 778
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
689-934 |
3.21e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 55.02 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 689 RERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEH--LDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQ 766
Cdd:COG3206 167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALR 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 767 GEAASREDTICLLQNEKII--LEAALQAAKSGKEEfdrgarrleegteetsetlekLREELAIKSGQVEHLQQETATLKK 844
Cdd:COG3206 247 AQLGSGPDALPELLQSPVIqqLRAQLAELEAELAE---------------------LSARYTPNHPDVIALRAQIAALRA 305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 845 QTQKIKEQFLQqkvmveayrrdatSKDQLISELKATRKRLDSELKELRQELMQVhgekRAAEAELSRLHREAAQVRQQMA 924
Cdd:COG3206 306 QLQQEAQRILA-------------SLEAELEALQAREASLQAQLAQLEARLAEL----PELEAELRRLEREVEVARELYE 368
|
250
....*....|
gi 1622847816 925 DLEGHLQSAQ 934
Cdd:COG3206 369 SLLQRLEEAR 378
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1146-1457 |
3.31e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 3.31e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1146 LETALAKREADLVHLNLQVQAVLQRKE--EEDRQMKQLVQALQaslekekekVNSLKEQVAAAKVEAGHNRRHVKAASLE 1223
Cdd:TIGR02168 191 LEDILNELERQLKSLERQAEKAERYKElkAELRELELALLVLR---------LEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1224 LSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQ 1303
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1304 KEREIQSLKQQLDLTEQQG---RKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNmKTLLQQNQQLKL 1380
Cdd:TIGR02168 342 LEEKLEELKEELESLEAELeelEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEAR-LERLEDRRERLQ 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1381 DLRRGAAKTRKEPKGEASSSNPATPIKIPD----CPVPASLLEELLKPPPAVSKEPLKNLNSCLQQLKQEMDSLQRQMEE 1456
Cdd:TIGR02168 421 QEIEELLKKLEEAELKELQAELEELEEELEelqeELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQEN 500
|
.
gi 1622847816 1457 H 1457
Cdd:TIGR02168 501 L 501
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
562-978 |
4.57e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.39 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 562 RATLTSKLKASQAEISSLQ-SVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKlenvSLSQQLTETQHRSM 640
Cdd:COG4717 44 RAMLLERLEKEADELFKPQgRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE----ELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 641 KEKGRIAAQLQGIEADMLDQEAAFLQIQEaktmveEDLQRRLEEFEGERERLQRMADSAASLEQQLEQ--------VKLT 712
Cdd:COG4717 120 KLEKLLQLLPLYQELEALEAELAELPERL------EELEERLEELRELEEELEELEAELAELQEELEElleqlslaTEEE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 713 LLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQ---------------ARLGELQGEAASREDTIC 777
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAleerlkearlllliaAALLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 778 ------------------LLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQET 839
Cdd:COG4717 274 tiagvlflvlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 840 ATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKR--LDSELKELRQELMQVHGEKRA--AEAELSRLHRE 915
Cdd:COG4717 354 REAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYqeLKEELEELEEQLEELLGELEEllEALDEEELEEE 433
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622847816 916 AAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEAnEVLKKQIEELQQEARKA 978
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEQLEEDGELAELLQEL-EELKAELRELAEEWAAL 495
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1047-1270 |
4.60e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.00 E-value: 4.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1047 ALHERIQALEAELQAVSHSKTLLEKELQEVialtSQELEESREKVLELEDELQESRgfrKKIKRLEESNKKLALELEHEK 1126
Cdd:COG4942 31 QLQQEIAELEKELAALKKEEKALLKQLAAL----ERRIAALARRIRALEQELAALE---AELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1127 GKLTGLGQSNAALREHNSILETALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAA 1206
Cdd:COG4942 104 EELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622847816 1207 KVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQiregkhsQEIAQFQAELAEAR 1270
Cdd:COG4942 184 EEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELE-------ALIARLEAEAAAAA 240
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
820-1345 |
5.19e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 5.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 820 KLREELAIKSGQVEHLQQETATLKKQTQKIKEQflQQKVMVEayrrdatskdqlISELKATRKRLDSELKELRQELMQVH 899
Cdd:TIGR04523 107 KINSEIKNDKEQKNKLEVELNKLEKQKKENKKN--IDKFLTE------------IKKKEKELEKLNNKYNDLKKQKEELE 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 900 GEKRAAEAELSRLHREAAQVRQQMADLEgHLQSAQKERDEMETHLQSlqfdkeQMVAVTEANEVLKKQIEELQQEARK-- 977
Cdd:TIGR04523 173 NELNLLEKEKLNIQKNIDKIKNKLLKLE-LLLSNLKKKIQKNKSLES------QISELKKQNNQLKDNIEKKQQEINEkt 245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 978 -AITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGI---LSRRLQEALAAKEAADAELGQlraqggsgDSSLALHERIQ 1053
Cdd:TIGR04523 246 tEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKikeLEKQLNQLKSEISDLNNQKEQ--------DWNKELKSELK 317
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1054 ALEAELQAVSHSKTLLEK---ELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKG--- 1127
Cdd:TIGR04523 318 NQEKKLEEIQNQISQNNKiisQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINdle 397
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1128 -KLTGLGQSNAALREHNSILET---ALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQV 1203
Cdd:TIGR04523 398 sKIQNQEKLNQQKDEQIKKLQQekeLLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1204 AAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQ 1283
Cdd:TIGR04523 478 NKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE 557
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847816 1284 LSKQPVG--NQEMENLKWE---VDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQE 1345
Cdd:TIGR04523 558 NLEKEIDekNKEIEELKQTqksLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKK 624
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
879-1367 |
8.01e-07 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 53.59 E-value: 8.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 879 ATRKRLDSELKELRQELMQVHGEKRAAEAELSR----LHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQM 954
Cdd:pfam05557 2 AELIESKARLSQLQNEKKQMELEHKRARIELEKkasaLKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 955 VAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEnavgilsrRLQEALAAKEAADAELGQ 1034
Cdd:pfam05557 82 KKYLEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELE--------ELQERLDLLKAKASEAEQ 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1035 LRAQGGSGDSSLALHE-RIQALEAELQAVSHSKTLLEKELQEVIALTSQE------------LEESREKVLELEDELQes 1101
Cdd:pfam05557 154 LRQNLEKQQSSLAEAEqRIKELEFEIQSQEQDSEIVKNSKSELARIPELEkelerlrehnkhLNENIENKLLLKEEVE-- 231
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1102 rGFRKKIKRLEESNKKLA-LELEHEK--------------------------GKLTGLGQSNAALREHNSILETALakre 1154
Cdd:pfam05557 232 -DLKRKLEREEKYREEAAtLELEKEKleqelqswvklaqdtglnlrspedlsRRIEQLQQREIVLKEENSSLTSSA---- 306
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1155 adlvhlnLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAaslelseVKKELQAK 1234
Cdd:pfam05557 307 -------RQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILES-------YDKELTMS 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1235 EHLVQKLQaeaddlqiREGKHSQEIAQFQAELAEARVQLQllqkqldeqlskqpVGNQEMENLKWEVDQKEREIQSLKQQ 1314
Cdd:pfam05557 373 NYSPQLLE--------RIEEAEDMTQKMQAHNEEMEAQLS--------------VAEEELGGYKQQAQTLERELQALRQQ 430
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622847816 1315 LDLTEQQG--------RKELEGLQ---QLLQNVKSELEMAQEDLSMtQKDKFMLQAKVSELKNN 1367
Cdd:pfam05557 431 ESLADPSYskeevdslRRKLETLElerQRLREQKNELEMELERRCL-QGDYDPKKTKVLHLSMN 493
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
835-1189 |
8.71e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 53.76 E-value: 8.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 835 LQQETATLKKQTQKIKEQFLQQKVMVEAYrrdatskdqlisELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHR 914
Cdd:PRK11281 41 VQAQLDALNKQKLLEAEDKLVQQDLEQTL------------ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 915 EAAQ-VRQQMADLEghLQSAQKERDEMETHLQSLQfdkeqmVAVTEANEVLkkqieelqqearkaITEQKQKMRrlgsdl 993
Cdd:PRK11281 109 DNDEeTRETLSTLS--LRQLESRLAQTLDQLQNAQ------NDLAEYNSQL--------------VSLQTQPER------ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 994 tsAQKEMktkhkaYENavgilSRRLQealaakeaadaelgQLRAQ-GGSGDSSLAL-HERIQALEAELQAVSHSKTLLEK 1071
Cdd:PRK11281 161 --AQAAL------YAN-----SQRLQ--------------QIRNLlKGGKVGGKALrPSQRVLLQAEQALLNAQNDLQRK 213
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1072 ELQ---EVIALTSQELEESREKVLELEDELQESRGFRKKiKRLEESNKKLAlelEHEKGKLTGLGQSNAALR---EHNSI 1145
Cdd:PRK11281 214 SLEgntQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS-KRLTLSEKTVQ---EAQSQDEAARIQANPLVAqelEINLQ 289
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1622847816 1146 LETALAK---READLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASL 1189
Cdd:PRK11281 290 LSQRLLKateKLNTLTQQNLRVKNWLDRLTQSERNIKEQISVLKGSL 336
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
573-1115 |
1.05e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.77 E-value: 1.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 573 QAEISSLQSVRQWYQQQLALAQEARV-RLQGEMAHIQVGQmTQAGLLEhlklenvSLSQQLTETQHRSMKEKGRIAAQLQ 651
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLAElEYLRAALRLWFAQ-RRLELLE-------AELEELRAELARLEAELERLEARLD 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 652 GIEADmldQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHldlm 731
Cdd:COG4913 320 ALREE---LDELEAQIRGNGGDRLEQLEREIERLERELEERER---RRARLEALLAALGLPLPASAEEFAALRAEA---- 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 732 kqltltQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKsgkeefdrgarrleegt 811
Cdd:COG4913 390 ------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLALR----------------- 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 812 eetsetlEKLREELAIKSGQV-----------------------------------EHLQQETATLKKQTQKIKEQFLQQ 856
Cdd:COG4913 447 -------DALAEALGLDEAELpfvgelievrpeeerwrgaiervlggfaltllvppEHYAAALRWVNRLHLRGRLVYERV 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 857 KVMVEAYRRDATSKDQLISELK----ATRKRLDSEL------------KELRQELM------QVHGEKRA---------- 904
Cdd:COG4913 520 RTGLPDPERPRLDPDSLAGKLDfkphPFRAWLEAELgrrfdyvcvdspEELRRHPRaitragQVKGNGTRhekddrrrir 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 905 --------AEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQ------FD--------------KEQMVA 956
Cdd:COG4913 600 sryvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlaeysWDeidvasaereiaelEAELER 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 957 VTEAN---EVLKKQIEELQQE---ARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGIlsrrlqEALAAKEAADA 1030
Cdd:COG4913 680 LDASSddlAALEEQLEELEAEleeLEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL------ARLELRALLEE 753
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1031 ELGQLRAQGGSGDSSLALHERIQALEAElqavshsktlLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKR 1110
Cdd:COG4913 754 RFAAALGDAVERELRENLEERIDALRAR----------LNRAEEELERAMRAFNREWPAETADLDADLESLPEYLALLDR 823
|
....*
gi 1622847816 1111 LEESN 1115
Cdd:COG4913 824 LEEDG 828
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
842-1370 |
1.20e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 1.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 842 LKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQ 921
Cdd:TIGR04523 38 LEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKE 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 922 QMADLEGHLQSAQKERDEMETH----LQSLQFDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKmrrlgsdltsaQ 997
Cdd:TIGR04523 118 QKNKLEVELNKLEKQKKENKKNidkfLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNI-----------Q 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 998 KEMKTKHKAYenavgilsRRLQEALAAKEAADAELGQLRAQggsgdsslalherIQALEAELQAVSHSKTLLEKELQEVi 1077
Cdd:TIGR04523 187 KNIDKIKNKL--------LKLELLLSNLKKKIQKNKSLESQ-------------ISELKKQNNQLKDNIEKKQQEINEK- 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1078 altSQELEESREKVLELEDELQE-SRGFRKKIKRLEESNKKLalelehekgkltglgqsnaalrehnSILETALAKREAD 1156
Cdd:TIGR04523 245 ---TTEISNTQTQLNQLKDEQNKiKKQLSEKQKELEQNNKKI-------------------------KELEKQLNQLKSE 296
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1157 LVHLNLQVQAVLQR--KEEEDRQMKQLVQaLQASLEKEKEKVNSLKEQVAAAKVEAGHN-------RRHVKAASLELSEV 1227
Cdd:TIGR04523 297 ISDLNNQKEQDWNKelKSELKNQEKKLEE-IQNQISQNNKIISQLNEQISQLKKELTNSesensekQRELEEKQNEIEKL 375
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1228 KKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKERE 1307
Cdd:TIGR04523 376 KKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELI 455
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622847816 1308 IQSLKQQLDLTEQQgrkeLEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKT 1370
Cdd:TIGR04523 456 IKNLDNTRESLETQ----LKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
872-1018 |
1.33e-06 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 51.08 E-value: 1.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 872 QLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERD------EMETHLQ 945
Cdd:COG1579 24 HRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVRNNKEyealqkEIESLKR 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622847816 946 SLQFDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRL 1018
Cdd:COG1579 104 RISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPPEL 176
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
405-783 |
2.07e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 405 ESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAVSTK---LQAQVECSHSSQQRQDSLSSEVDTL 481
Cdd:COG4717 96 ELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERleeLEERLEELRELEEELEELEAELAEL 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 482 KQscwDLERAMTDLQNMLEaknaslassnNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQQMTALQSQLQQVQLE 561
Cdd:COG4717 176 QE---ELEELLEQLSLATE----------EELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 562 R--------------------------ATLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQA 615
Cdd:COG4717 243 ErlkearlllliaaallallglggsllSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 616 GLLEHLKLENvSLSQQLTETQHRSMKEKGRIAAQLQGIEADmLDQEAAFLQIQE----AKTMVEEDLQRRLEEFEGERER 691
Cdd:COG4717 323 ELLAALGLPP-DLSPEELLELLDRIEELQELLREAEELEEE-LQLEELEQEIAAllaeAGVEDEEELRAALEQAEEYQEL 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 692 LQRMADSAASLEQQL------------EQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQ--SREQSLDALQTHYDE 757
Cdd:COG4717 401 KEELEELEEQLEELLgeleellealdeEELEEELEELEEELEELEEELEELREELAELEAELEqlEEDGELAELLQELEE 480
|
410 420
....*....|....*....|....*.
gi 1622847816 758 LQARLGELQGEAASREDTICLLQNEK 783
Cdd:COG4717 481 LKAELRELAEEWAALKLALELLEEAR 506
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
676-1186 |
2.40e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 52.13 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 676 EDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHY 755
Cdd:pfam10174 268 EDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEV 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 756 DELQARLGELQGEAASREDTICLLQNEKIILEAALQAAksgKEEFDRGARRLEEGTEETSETLEKLRE---ELAIKSGQV 832
Cdd:pfam10174 348 DALRLRLEEKESFLNKKTKQLQDLTEEKSTLAGEIRDL---KDMLDVKERKINVLQKKIENLQEQLRDkdkQLAGLKERV 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 833 EHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRldsELKELRQELMQVHGEKRAAEAELSRL 912
Cdd:pfam10174 425 KSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELESLKK---ENKDLKEKVSALQPELTEKESSLIDL 501
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 913 HREAAQVRQQMADLEGHLQS----AQKERDE---METHLQSLQFDKEQMVAVTEANE---VLKKQIEELQQEARKAITEq 982
Cdd:pfam10174 502 KEHASSLASSGLKKDSKLKSleiaVEQKKEEcskLENQLKKAHNAEEAVRTNPEINDrirLLEQEVARYKEESGKAQAE- 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 983 kqkMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSgdsslalhERIQALEAELQAV 1062
Cdd:pfam10174 581 ---VERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKKGAQ--------LLEEARRREDNLA 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1063 SHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKrlEESNKKLALELEHEKGKLTglgqsnAALREH 1142
Cdd:pfam10174 650 DNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR--AERRKQLEEILEMKQEALL------AAISEK 721
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 1622847816 1143 NS---ILETALAKREADlvhlnlqVQAVLQRKEEEDRQMKQLVQALQ 1186
Cdd:pfam10174 722 DAniaLLELSSSKKKKT-------QEEVMALKREKDRLVHQLKQQTQ 761
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
860-1434 |
3.56e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 3.56e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 860 VEAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAA-EAELSRLHREAAQVRQQMADLEGHLQSAQKERD 938
Cdd:PTZ00121 1226 AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAiKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 939 EMETHLQSLQFDKEQMVAVTEAN---EVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILS 1015
Cdd:PTZ00121 1306 EAKKKAEEAKKADEAKKKAEEAKkkaDAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1016 RRLQEALAAKEAADAELGQLRAQggsgDSSLALHERIQALEAELQA--VSHSKTLLEKELQEVIALTSQELEESREKVLE 1093
Cdd:PTZ00121 1386 KAEEKKKADEAKKKAEEDKKKAD----ELKKAAAAKKKADEAKKKAeeKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1094 LEDELQESRGFRKKIKRLEESNKKLALELEHEKGKltglgqsnaalREHNSILETALAKREAD-LVHLNLQVQAVLQRKE 1172
Cdd:PTZ00121 1462 AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAK-----------KKADEAKKAAEAKKKADeAKKAEEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1173 EEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQ-AKEHLVQKLQAEADDLQIR 1251
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEeARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1252 EGKHSQE----IAQFQAELAEARVQLQLLQKQLDEQLSKQPVGNQEMENL--KWEVDQKEREIQSLKQQLDLTEQQGRKE 1325
Cdd:PTZ00121 1611 EAKKAEEakikAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKikAAEEAKKAEEDKKKAEEAKKAEEDEKKA 1690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1326 LEGLQQLLQNVKSELEMAQEDLSMTQKDKfmlQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPATP 1405
Cdd:PTZ00121 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAE---ELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEE 1767
|
570 580
....*....|....*....|....*....
gi 1622847816 1406 IKipdcpvpaslLEELLKPPPAVSKEPLK 1434
Cdd:PTZ00121 1768 KK----------AEEIRKEKEAVIEEELD 1786
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
370-999 |
3.67e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.84 E-value: 3.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 370 KDVLQAAAAEHQDQGQEVNGEVRSRRESICSSV-----SLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKA 444
Cdd:COG4913 304 LARLEAELERLEARLDALREELDELEAQIRGNGgdrleQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFA 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 445 ELQAQLAAVSTKLQAQVECSHS-----------SQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAK----------- 502
Cdd:COG4913 384 ALRAEAAALLEALEEELEALEEalaeaeaalrdLRRELRELEAEIASLERRKSNIPARLLALRDALAEAlgldeaelpfv 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 503 -----------------NASLASSNNDLQVAEEQYQRLVAKVEDmqksmlskdntvHDLR-----QQMTALQSQLQQVQL 560
Cdd:COG4913 464 gelievrpeeerwrgaiERVLGGFALTLLVPPEHYAAALRWVNR------------LHLRgrlvyERVRTGLPDPERPRL 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 561 ERATLTSKLKASQAEIsslqsvRQWYQQQLAlaqearvrlqGEMAHIQVGQmtqaglLEHLKLENVSLSQQLTETQHRSM 640
Cdd:COG4913 532 DPDSLAGKLDFKPHPF------RAWLEAELG----------RRFDYVCVDS------PEELRRHPRAITRAGQVKGNGTR 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 641 KEKG---RIAAQLQgIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQvKLTLLQRD 717
Cdd:COG4913 590 HEKDdrrRIRSRYV-LGFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWD-EIDVASAE 667
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 718 QQLEALQQEhldlMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGK 797
Cdd:COG4913 668 REIAELEAE----LERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLA 743
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 798 EEFDRGARRLEEGTEETSETLEKLREELaikSGQVEHLQQETATLKKQTQKIKEQFLQQkvmveaYRRDATSKDQLISEL 877
Cdd:COG4913 744 RLELRALLEERFAAALGDAVERELRENL---EERIDALRARLNRAEEELERAMRAFNRE------WPAETADLDADLESL 814
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 878 KATRKRLD----SELKELRQELMQVhgEKRAAEAEL----SRLHREAAQVRQQMADLEGHLQSAQKERDemeTHLQsLQF 949
Cdd:COG4913 815 PEYLALLDrleeDGLPEYEERFKEL--LNENSIEFVadllSKLRRAIREIKERIDPLNDSLKRIPFGPG---RYLR-LEA 888
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|
gi 1622847816 950 DKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKE 999
Cdd:COG4913 889 RPRPDPEVREFRQELRAVTSGASLFDEELSEARFAALKRLIERLRSEEEE 938
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
373-949 |
4.06e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 51.76 E-value: 4.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 373 LQAAAAEHQDQGQEVNGEVRSRRESICSSVSlESSAAETQEemLQVLKEKM-RLEGQLEALSLEASQALKEKAE------ 445
Cdd:pfam12128 270 DETLIASRQEERQETSAELNQLLRTLDDQWK-EKRDELNGE--LSAADAAVaKDRSELEALEDQHGAFLDADIEtaaadq 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 446 -----LQAQLAAVSTKLQAQVECSHSSQQRQDSLSSEVDtlKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAE--- 517
Cdd:pfam12128 347 eqlpsWQSELENLEERLKALTGKHQDVTAKYNRRRSKIK--EQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALEsel 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 518 -EQYQRLVAKVEDMQKSMLSKDNTVHDLRQQMTALQSQLQQVQLERATLT---SKLKASQAEISSLQS----VRQWYQQQ 589
Cdd:pfam12128 425 rEQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLENFDERIErarEEQEAANAEVERLQSelrqARKRRDQA 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 590 LALAQEARVRL---QGEMAHIQVGQMTQAG-LLEHLKLENVSLSQQL-----TETQHRSMKEKGRIAAQLQG---IEADM 657
Cdd:pfam12128 505 SEALRQASRRLeerQSALDELELQLFPQAGtLLHFLRKEAPDWEQSIgkvisPELLHRTDLDPEVWDGSVGGelnLYGVK 584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 658 LDQEAafLQIQEAKTMvEEDLQRRLEEFEgerERLQRMADSAASLEQQLEQVKLTLLQRDQQLE----ALQQEHLDLM-- 731
Cdd:pfam12128 585 LDLKR--IDVPEWAAS-EEELRERLDKAE---EALQSAREKQAAAEEQLVQANGELEKASREETfartALKNARLDLRrl 658
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 732 ------------KQLTLTQEALQSREQSLDALQTHYD-ELQARLGELQGEaaSREDTICLLQNEKII---LEAALQAAKS 795
Cdd:pfam12128 659 fdekqsekdkknKALAERKDSANERLNSLEAQLKQLDkKHQAWLEEQKEQ--KREARTEKQAYWQVVegaLDAQLALLKA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 796 GKEEFDRGARRLEEGTEETSETLEKLR----EELAIKSGQVEHLQQETATLKKQTQKIKE--QFLQQKVMVEAYRRDATS 869
Cdd:pfam12128 737 AIAARRSGAKAELKALETWYKRDLASLgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRyfDWYQETWLQRRPRLATQL 816
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 870 KD--QLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSL 947
Cdd:pfam12128 817 SNieRAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSEQAQGSIGERLAQLE 896
|
..
gi 1622847816 948 QF 949
Cdd:pfam12128 897 DL 898
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
835-1369 |
4.27e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.58 E-value: 4.27e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 835 LQQETATLKKQTQKIKEQflqqkvmveaYRRDATSKDQLISELKATRKRLDsELKELRQELMQVHGEKRAAEAELSRLHR 914
Cdd:PRK02224 211 LESELAELDEEIERYEEQ----------REQARETRDEADEVLEEHEERRE-ELETLEAEIEDLRETIAETEREREELAE 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 915 EAAQVRQQMADLEghlqsaqkerDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELQ---QEARKAITEQKQKMRRLGS 991
Cdd:PRK02224 280 EVRDLRERLEELE----------EERDDLLAEAGLDDADAEAVEARREELEDRDEELRdrlEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 992 DLTSAQKEMKTKHkayeNAVGILSRRLQEAlaakeaadaelgqlRAQGGSGDSSLA-LHERIQALEAelqAVSHSKTLLE 1070
Cdd:PRK02224 350 DADDLEERAEELR----EEAAELESELEEA--------------REAVEDRREEIEeLEEEIEELRE---RFGDAPVDLG 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1071 kELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNK-----------KLALELEHEKGKLTGLGQSNAAL 1139
Cdd:PRK02224 409 -NAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqpvegsPHVETIEEDRERVEELEAELEDL 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1140 REHNSILETALAKREaDLVHLNLQVQAVLQRKEEedrqMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKA 1219
Cdd:PRK02224 488 EEEVEEVEERLERAE-DLVEAEDRIERLEERRED----LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1220 ASLELSEVKKELQAKEHLVQKLQAEADDLqiregkhsQEIAQFQAELAEARvqlQLLQKQLDEQLSKQPVGNQEMENLKw 1299
Cdd:PRK02224 563 AEEEAEEAREEVAELNSKLAELKERIESL--------ERIRTLLAAIADAE---DEIERLREKREALAELNDERRERLA- 630
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1300 evDQKEReiqslKQQLDLTEQQGRkeLEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMK 1369
Cdd:PRK02224 631 --EKRER-----KRELEAEFDEAR--IEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELE 691
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
674-1121 |
4.65e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 674 VEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEH--LDLMKQLTLTQEALQSRE--QSLD 749
Cdd:PRK03918 308 ELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHelYEEAKAKKEELERLKKRLtgLTPE 387
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 750 ALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTeetsetleklREELAIK- 828
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEH----------RKELLEEy 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 829 SGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKdQLISELKATRKRLDS-----------ELKELRQELMQ 897
Cdd:PRK03918 458 TAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLK-ELAEQLKELEEKLKKynleelekkaeEYEKLKEKLIK 536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 898 VHGEKRAAEAELSRLhreaAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVA--VTEANEVLKKQIEELQQEA 975
Cdd:PRK03918 537 LKGEIKSLKKELEKL----EELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEerLKELEPFYNEYLELKDAEK 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 976 RKAITEQKQKmrRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAelgqlraqggsgDSSLALHERIQAL 1055
Cdd:PRK03918 613 ELEREEKELK--KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR------------EEYLELSRELAGL 678
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1622847816 1056 EAELQAVSHSKTLLEKELQEVIAlTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALE 1121
Cdd:PRK03918 679 RAELEELEKRREEIKKTLEKLKE-ELEEREKAKKELEKLEKALERVEELREKVKKYKALLKERALS 743
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
606-766 |
1.05e-05 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 49.28 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 606 HIQVGQMTQAG-LLehLKLENVSLSQQLTETQHRsmkekgriAAQLQGIEADMLDQEAAFLQIQEAKTMVEEdLQRRLEE 684
Cdd:COG1566 60 LVKEGDRVKKGqVL--ARLDPTDLQAALAQAEAQ--------LAAAEAQLARLEAELGAEAEIAAAEAQLAA-AQAQLDL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 685 FEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEhLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGE 764
Cdd:COG1566 129 AQRELERYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQ-LAQAQAGLREEEELAAAQAQVAQAEAALAQAELNLAR 207
|
..
gi 1622847816 765 LQ 766
Cdd:COG1566 208 TT 209
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
373-709 |
1.09e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.44 E-value: 1.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 373 LQAAAAEHQDQGQEVNGEVRSRRESIcssVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAA 452
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKEL---EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 453 VSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQK 532
Cdd:TIGR02168 773 AEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 533 SMLSKDNTVHDLRQQMTALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGqm 612
Cdd:TIGR02168 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELR-- 930
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 613 tqaglLEHLKLENVSLSQQLTETQHRSMKEkgrIAAQLQGIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERL 692
Cdd:TIGR02168 931 -----LEGLEVRIDNLQERLSEEYSLTLEE---AEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERY 1002
|
330
....*....|....*..
gi 1622847816 693 QRMADSAASLEQQLEQV 709
Cdd:TIGR02168 1003 DFLTAQKEDLTEAKETL 1019
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
675-1338 |
1.39e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 49.84 E-value: 1.39e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 675 EEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQrDQQLEALQQEHLDLmkqltlTQEALQSREQSLDA-LQT 753
Cdd:pfam12128 229 DIQAIAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKS-DETLIASRQEERQE------TSAELNQLLRTLDDqWKE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 754 HYDELQARLGELQGEAASREDTICLLQNE-KIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKL----REELAIK 828
Cdd:pfam12128 302 KRDELNGELSAADAAVAKDRSELEALEDQhGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHqdvtAKYNRRR 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 829 SGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSK-----DQLISELKATRKRLDSELKELRQELMQVHGE-- 901
Cdd:pfam12128 382 SKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQALESElreqlEAGKLEFNEEEYRLKSRLGELKLRLNQATATpe 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 902 ----KRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSL-QFDKEQMVAVTEANEVLKKQIEELQQEAR 976
Cdd:pfam12128 462 lllqLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQAsRRLEERQSALDELELQLFPQAGTLLHFLR 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 977 KAITEQKQKMRRLGSDL----TSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAElgQLRAQGGSGDSSL-ALHER 1051
Cdd:pfam12128 542 KEAPDWEQSIGKVISPEllhrTDLDPEVWDGSVGGELNLYGVKLDLKRIDVPEWAASEE--ELRERLDKAEEALqSAREK 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1052 IQALEAELQAVShsKTLLEKELQEVIALTSqeLEESREKVLELEDELQ-ESRGFRKKIKRLEESNKKLALELEHEKgKLT 1130
Cdd:pfam12128 620 QAAAEEQLVQAN--GELEKASREETFARTA--LKNARLDLRRLFDEKQsEKDKKNKALAERKDSANERLNSLEAQL-KQL 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1131 GLGQSNAALREHNSILETALAKREADLV-------HLNLQVQAVLQRKEEEDRQMKQLVQALQASLEK---EKEKVNSLK 1200
Cdd:pfam12128 695 DKKHQAWLEEQKEQKREARTEKQAYWQVvegaldaQLALLKAAIAARRSGAKAELKALETWYKRDLASlgvDPDVIAKLK 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1201 EQVAA--AKVEAGHNRRHvKAASLELSEVKKELQAKEHL---VQKLQAEADDLQIREGKHSQEIAQFQAELAEARVQLQL 1275
Cdd:pfam12128 775 REIRTleRKIERIAVRRQ-EVLRYFDWYQETWLQRRPRLatqLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEK 853
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847816 1276 LQKQLDEQLSKQPVGNQEMENLK--WEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLLQNVKS 1338
Cdd:pfam12128 854 QQVRLSENLRGLRCEMSKLATLKedANSEQAQGSIGERLAQLEDLKLKRDYLSESVKKYVEHFKN 918
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
399-615 |
1.70e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 399 CSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAVSTKLQAQVECSHSSQQRQDSLSSEV 478
Cdd:COG4942 13 LAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 479 DTLKQscwDLERAMTDLQNMLEA--------------KNASLASSNNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDL 544
Cdd:COG4942 93 AELRA---ELEAQKEELAELLRAlyrlgrqpplalllSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAEL 169
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847816 545 RQQMTALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQVGQMTQA 615
Cdd:COG4942 170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
408-1038 |
2.07e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.20 E-value: 2.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 408 AAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAVStKLQAQVEcshsSQQRQDSLSSEVDTLKQSCWD 487
Cdd:TIGR00618 234 ALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLE-ETQERIN----RARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 488 LERAMTDLQNMLEAKNASLASSNNDL-QVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQ----QMTALQSQLQQVQLER 562
Cdd:TIGR00618 309 AQRIHTELQSKMRSRAKLLMKRAAHVkQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIReiscQQHTLTQHIHTLQQQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 563 ATLTSKLKASQAEISSLQSVRqwyQQQLALAQEARVrLQGEMAHIQVGQMTQAGLLEHLKL--ENVSLSQQLTETQHRSM 640
Cdd:TIGR00618 389 TTLTQKLQSLCKELDILQREQ---ATIDTRTSAFRD-LQGQLAHAKKQQELQQRYAELCAAaiTCTAQCEKLEKIHLQES 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 641 KEKGRIAAQLQGIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQL 720
Cdd:TIGR00618 465 AQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSE 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 721 EALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEf 800
Cdd:TIGR00618 545 EDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQP- 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 801 drgARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKkqTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAT 880
Cdd:TIGR00618 624 ---EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREH--ALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 881 RKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQvrqqmaDLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEA 960
Cdd:TIGR00618 699 LAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAA------REDALNQSLKELMHQARTVLKARTEAHFNNNEEVTA 772
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847816 961 NEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQ 1038
Cdd:TIGR00618 773 ALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQ 850
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1082-1327 |
3.51e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 3.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1082 QELEESREKVLELedelqesrgfRKKIKRLEESnKKLALELEHEKGKLtglgqsnAALREHNSILETALAKREADLVhln 1161
Cdd:COG4913 235 DDLERAHEALEDA----------REQIELLEPI-RELAERYAAARERL-------AELEYLRAALRLWFAQRRLELL--- 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1162 lqvQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAghnrrhVKAASLELSEVKKELQAKEHLVQKL 1241
Cdd:COG4913 294 ---EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDR------LEQLEREIERLERELEERERRRARL 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1242 QAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQLSKQpvgNQEMENLKWEVDQKEREIQSLKQQ---LDLT 1318
Cdd:COG4913 365 EALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEA---EAALRDLRRELRELEAEIASLERRksnIPAR 441
|
....*....
gi 1622847816 1319 EQQGRKELE 1327
Cdd:COG4913 442 LLALRDALA 450
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
843-1000 |
3.75e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 48.24 E-value: 3.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 843 KKQTQKIKEQFLQQKVMVEAYRRDA-TSKDQLISELKatrkrldSELKELRQELmqvHGEKRAAEAELSRLHReaaQVRQ 921
Cdd:PRK12704 27 KIAEAKIKEAEEEAKRILEEAKKEAeAIKKEALLEAK-------EEIHKLRNEF---EKELRERRNELQKLEK---RLLQ 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 922 QMADLEGHLQSAQKERDEMETHLQSLqfdkeqmvavteanEVLKKQIEELQQEARKAITEQKQKMRRLgSDLTSAQ-KEM 1000
Cdd:PRK12704 94 KEENLDRKLELLEKREEELEKKEKEL--------------EQKQQELEKKEEELEELIEEQLQELERI-SGLTAEEaKEI 158
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
386-988 |
4.70e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.14 E-value: 4.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 386 EVNGEVRSRRESICSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAqLAAVSTKLQAQVEcsh 465
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELE--- 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 466 ssqqrqdSLSSEVDTLKQSCWDLERAMTDLQ---NMLEAKNASLassnNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVH 542
Cdd:PRK03918 249 -------SLEGSKRKLEEKIRELEERIEELKkeiEELEEKVKEL----KELKEKAEEYIKLSEFYEEYLDELREIEKRLS 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 543 DLRQQMTALQSQ---LQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLALAQEARvRLQGEMAHIQVgqmtqagllE 619
Cdd:PRK03918 318 RLEEEINGIEERikeLEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTGLTP---------E 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 620 HLKLENVSLSQQLTETQHRSMKEKGRIaAQLQGIEADMldqEAAFLQIQEAKT--------MVEEDLQRRLEEFEGERER 691
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARI-GELKKEIKEL---KKAIEELKKAKGkcpvcgreLTEEHRKELLEEYTAELKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 692 LQRMADSAASLEQQLEQVKL---TLLQRDQQLEALQQehldLMKQLTLTQEALQSRE-QSLDALQTHYDELQARLGELQG 767
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELReleKVLKKESELIKLKE----LAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 768 EAASREDTI---CLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEetsetleklrEELAIKSGQVEHLQQETATLKK 844
Cdd:PRK03918 540 EIKSLKKELeklEELKKKLAELEKKLDELEEELAELLKELEELGFESV----------EELEERLKELEPFYNEYLELKD 609
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 845 QTQKIKEQFLQQKVMveayRRDATSKDQLISELKATRKRLDSELKELrqelmqvhgEKRAAEAELSRLHREAAQVRQQMA 924
Cdd:PRK03918 610 AEKELEREEKELKKL----EEELDKAFEELAETEKRLEELRKELEEL---------EKKYSEEEYEELREEYLELSRELA 676
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1622847816 925 DLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELqQEARKAITEQKQKMRR 988
Cdd:PRK03918 677 GLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV-EELREKVKKYKALLKE 739
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
1051-1268 |
5.05e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 47.70 E-value: 5.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1051 RIQALEAELQAVSHSKTLLE-------KELQEVIALTSQELEESREKVlelEDELQESRGFRKKIKRLEESNKKLALELE 1123
Cdd:PHA02562 175 KIRELNQQIQTLDMKIDHIQqqiktynKNIEEQRKKNGENIARKQNKY---DELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1124 HEKGKLTGLGQSNAALREhnsilETALAKREADLVHLNLQVQAVLQRKEEEDRQM---KQLVQALQASLEKEKEKVNSLK 1200
Cdd:PHA02562 252 DPSAALNKLNTAAAKIKS-----KIEQFQKVIKMYEKGGVCPTCTQQISEGPDRItkiKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847816 1201 EQVaaakVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAELAE 1268
Cdd:PHA02562 327 EIM----DEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDK 390
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
718-1140 |
6.40e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 6.40e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 718 QQLEALQQEhldlMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQnekiiLEAALQAAKSGK 797
Cdd:COG4717 71 KELKELEEE----LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP-----LYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 798 EEFDRGARRLEEGTEETSEtlekLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVM-VEAYRRDATSKDQLISE 876
Cdd:COG4717 142 AELPERLEELEERLEELRE----LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEeLEELQQRLAELEEELEE 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 877 LKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLhreAAQVRQQMADLEGHLQSAQKERDEMET------HLQSLQFD 950
Cdd:COG4717 218 AQEELEELEEELEQLENELEAAALEERLKEARLLLL---IAAALLALLGLGGSLLSLILTIAGVLFlvlgllALLFLLLA 294
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 951 KEQMVAVTEANEV-LKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAAd 1029
Cdd:COG4717 295 REKASLGKEAEELqALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIA- 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1030 aelgQLRAQGGSGD-----SSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTS-----QELEESREKVLELEDEL- 1098
Cdd:COG4717 374 ----ALLAEAGVEDeeelrAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDeeeleEELEELEEELEELEEELe 449
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 1622847816 1099 ---QESRGFRKKIKRLEESNK--KLALELEHEKGKLTGLGQSNAALR 1140
Cdd:COG4717 450 elrEELAELEAELEQLEEDGElaELLQELEELKAELRELAEEWAALK 496
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
469-1003 |
7.42e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 47.32 E-value: 7.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 469 QRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQQM 548
Cdd:TIGR04523 117 EQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKL 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 549 TALQSQLQQVQleraTLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHIQvgqmTQaglLEHLKLENVSL 628
Cdd:TIGR04523 197 LKLELLLSNLK----KKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQ----TQ---LNQLKDEQNKI 265
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 629 SQQLTETQHRSMKEKGRIA---AQLQGIEADMLD--QEAAFLQIQEAKTMVEeDLQRRLEEFEGE----RERLQRMADSA 699
Cdd:TIGR04523 266 KKQLSEKQKELEQNNKKIKeleKQLNQLKSEISDlnNQKEQDWNKELKSELK-NQEKKLEEIQNQisqnNKIISQLNEQI 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 700 ASLEQQLEQVKLTLLQRDQQLEALQ----------QEHLDLMKQLTLTQEALQSR-----------EQSLDALQTHYDEL 758
Cdd:TIGR04523 345 SQLKKELTNSESENSEKQRELEEKQneieklkkenQSYKQEIKNLESQINDLESKiqnqeklnqqkDEQIKKLQQEKELL 424
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 759 QARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQE 838
Cdd:TIGR04523 425 EKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE 504
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 839 TATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELK---------ELRQELMQVHGEKRAAEAEL 909
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKkenlekeidEKNKEIEELKQTQKSLKKKQ 584
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 910 SRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEAnevLKKQIEELQQEArKAITEQKQKMRRL 989
Cdd:TIGR04523 585 EEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKN---IKSKKNKLKQEV-KQIKETIKEIRNK 660
|
570
....*....|....
gi 1622847816 990 GSDLTSAQKEMKTK 1003
Cdd:TIGR04523 661 WPEIIKKIKESKTK 674
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
683-1126 |
1.04e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 46.60 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 683 EEFEGERERLQRMADSAA---SLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQ 759
Cdd:pfam19220 3 QRNELLRVRLGEMADRLEdlrSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAYGKLRRELAGLTRRLSAAE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 760 ARLGELQGEAASredticllqnekiiLEAALQAAKSGKEEfdrgarrleegteetsetlekLREELAIKSGQVEHLQQET 839
Cdd:pfam19220 83 GELEELVARLAK--------------LEAALREAEAAKEE---------------------LRIELRDKTAQAEALERQL 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 840 ATLKKQTQKIKEQflqqkvmVEAYRRDATSKDQLISelkatrkRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQV 919
Cdd:pfam19220 128 AAETEQNRALEEE-------NKALREEAQAAEKALQ-------RAEGELATARERLALLEQENRRLQALSEEQAAELAEL 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 920 RQQMADLEGHLQSAQKERDEMETHLqslqfdkeqmVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQK- 998
Cdd:pfam19220 194 TRRLAELETQLDATRARLRALEGQL----------AAEQAERERAEAQLEEAVEAHRAERASLRMKLEALTARAAATEQl 263
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 999 --EMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQggsgdsslalHERIQALEAELQAVSHSKTLLEKELQEV 1076
Cdd:pfam19220 264 laEARNQLRDRDEAIRAAERRLKEASIERDTLERRLAGLEAD----------LERRTQQFQEMQRARAELEERAEMLTKA 333
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|.
gi 1622847816 1077 IALTSQELEESREKVLELEDELQE-SRGFRKKIKRLEESNKKLALELEHEK 1126
Cdd:pfam19220 334 LAAKDAALERAEERIASLSDRIAElTKRFEVERAALEQANRRLKEELQRER 384
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
869-1364 |
1.32e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 869 SKDQLISELKATRKRLDSELKELRQELmqvhGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMEtHLQSLQ 948
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELEEEL----KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLE-KLLQLL 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 949 FDKEQMVAVTEANEVLKKQIEELQQEaRKAITEQKQKMRRLGSDLTSAQKEMKTKHKayenavgilsrrlqealaakeaa 1028
Cdd:COG4717 129 PLYQELEALEAELAELPERLEELEER-LEELRELEEELEELEAELAELQEELEELLE----------------------- 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1029 daelgqlraqggsgDSSLALHERIQALEAELQAVSHSKTLLEKELQEVialtSQELEESREKVLELEDELQESRgFRKKI 1108
Cdd:COG4717 185 --------------QLSLATEEELQDLAEELEELQQRLAELEEELEEA----QEELEELEEELEQLENELEAAA-LEERL 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1109 KRLEESNKKLALELEhekgkLTGLGQSNAALREHN-----------SILETALAKREADLVHLNLQVQAVLQRKEEEDRQ 1177
Cdd:COG4717 246 KEARLLLLIAAALLA-----LLGLGGSLLSLILTIagvlflvlgllALLFLLLAREKASLGKEAEELQALPALEELEEEE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1178 MKQLVQALQASLEKEKEKVNSLKEQVaaakveaghnrRHVKAASLELSEVKKELQakehlVQKLQAEADDLQIREGKHSQ 1257
Cdd:COG4717 321 LEELLAALGLPPDLSPEELLELLDRI-----------EELQELLREAEELEEELQ-----LEELEQEIAALLAEAGVEDE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1258 EIAQFQAELAEARVQLQLLQKQLDEQLSKQPvGNQEMENLKWEVDQKEREIQSLKQQLDLTEqqgrKELEGLQQLLQNVK 1337
Cdd:COG4717 385 EELRAALEQAEEYQELKEELEELEEQLEELL-GELEELLEALDEEELEEELEELEEELEELE----EELEELREELAELE 459
|
490 500
....*....|....*....|....*....
gi 1622847816 1338 SELEMAQED--LSMTQKDKFMLQAKVSEL 1364
Cdd:COG4717 460 AELEQLEEDgeLAELLQELEELKAELREL 488
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
886-978 |
1.42e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 46.61 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 886 SELKELRQELMQVHGEKRAAEAELSRLHRE-AAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEVL 964
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFErLAELRDELAELEEELEALKARWEAEKELIEEIQELKEELEQRYGKIPEL 490
|
90
....*....|....
gi 1622847816 965 KKQIEELQQEARKA 978
Cdd:COG0542 491 EKELAELEEELAEL 504
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
881-1332 |
1.48e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 46.49 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 881 RKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSA-------------QKERDEMETHLQSL 947
Cdd:PRK04863 281 RRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAsdhlnlvqtalrqQEKIERYQADLEEL 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 948 QFD-KEQMVAVTEANEvlkkQIEELQQEARKAITEQKQKMRRLgSDLTSAQKEMKTKHKAYENAVgilsRRLQealaake 1026
Cdd:PRK04863 361 EERlEEQNEVVEEADE----QQEENEARAEAAEEEVDELKSQL-ADYQQALDVQQTRAIQYQQAV----QALE------- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1027 aadaelgqlRAQGGSGDSSLALH---ERIQALEAELQAVSHSKTLLEKELQevialTSQELEESREKVLELedelqeSRG 1103
Cdd:PRK04863 425 ---------RAKQLCGLPDLTADnaeDWLEEFQAKEQEATEELLSLEQKLS-----VAQAAHSQFEQAYQL------VRK 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1104 FRKKIKRLEESNKKLALELEHEKGKLtgLGQSNAALREHNSILETALAKrEADLVHLNLQVQAVLQRKEEEDRQMKQLVQ 1183
Cdd:PRK04863 485 IAGEVSRSEAWDVARELLRRLREQRH--LAEQLQQLRMRLSELEQRLRQ-QQRAERLLAEFCKRLGKNLDDEDELEQLQE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1184 ALQASLEkekekvnSLKEQVAaakvEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKH---SQEIA 1260
Cdd:PRK04863 562 ELEARLE-------SLSESVS----EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEfedSQDVT 630
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1622847816 1261 QFQAELAEarvqlqllqkqldeqlskqpvgnQEMEnLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQL 1332
Cdd:PRK04863 631 EYMQQLLE-----------------------RERE-LTVERDELAARKQALDEEIERLSQPGGSEDPRLNAL 678
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
861-1038 |
1.50e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 861 EAYRRDATSKDQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEM 940
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 941 ETHLQSL-----------QFDKEQMV----AVTEANEVLKKQIEELQQEA------RKAITEQKQKMRRLGSDLTSAQKE 999
Cdd:COG4942 110 LRALYRLgrqpplalllsPEDFLDAVrrlqYLKYLAPARREQAEELRADLaelaalRAELEAERAELEALLAELEEERAA 189
|
170 180 190
....*....|....*....|....*....|....*....
gi 1622847816 1000 MKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQ 1038
Cdd:COG4942 190 LEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
1059-1231 |
1.88e-04 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 45.86 E-value: 1.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1059 LQAVSHSKTLLEKELQEVIALTSQELEESREKVLEL-----EDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTglg 1133
Cdd:PRK12705 25 LKKRQRLAKEAERILQEAQKEAEEKLEAALLEAKELllrerNQQRQEARREREELQREEERLVQKEEQLDARAEKLD--- 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1134 qsnaALREHNSILETALAKREADLVHLNLQVQAVLQRKE--EEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAG 1211
Cdd:PRK12705 102 ----NLENQLEEREKALSARELELEELEKQLDNELYRVAglTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERK 177
|
170 180
....*....|....*....|
gi 1622847816 1212 HNRRHVKAASLELSEVKKEL 1231
Cdd:PRK12705 178 AQNILAQAMQRIASETASDL 197
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
738-998 |
2.06e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 738 QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAaksgkeefdrgarrleegteetset 817
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA------------------------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 818 lekLREELAIKSGQVEHLQQETATLKKQTQKIKEQFlqQKVMVEAYRRDATSKDQLI---SELKATRKRLDSeLKELRQE 894
Cdd:COG4942 74 ---LEQELAALEAELAELEKEIAELRAELEAQKEEL--AELLRALYRLGRQPPLALLlspEDFLDAVRRLQY-LKYLAPA 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 895 LMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKE-RDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELQQ 973
Cdd:COG4942 148 RREQAEELRADLAELAALRAELEAERAELEALLAELEEERAAlEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
250 260
....*....|....*....|....*
gi 1622847816 974 EARKAITEQKQKMRRLGSDLTSAQK 998
Cdd:COG4942 228 LIARLEAEAAAAAERTPAAGFAALK 252
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
1197-1341 |
2.08e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 45.92 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1197 NSLKEQVAAAKVEAghnRRHVKAASLELSEVKKE--LQAKEHlVQKLQAEADdlqiregkhsQEIAQFQAELA--EARVQ 1272
Cdd:PRK12704 27 KIAEAKIKEAEEEA---KRILEEAKKEAEAIKKEalLEAKEE-IHKLRNEFE----------KELRERRNELQklEKRLL 92
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847816 1273 LQLLQKQLDEQLSKQPvgNQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRKELE---GL------QQLLQNVKSELE 1341
Cdd:PRK12704 93 QKEENLDRKLELLEKR--EEELEKKEKELEQKQQELEKKEEELEELIEEQLQELErisGLtaeeakEILLEKVEEEAR 168
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
794-1331 |
2.26e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 794 KSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKK--QTQKIKEQFLQQKV------------- 858
Cdd:PTZ00121 1073 KPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKaeDARKAEEARKAEDArkaeearkaedak 1152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 859 MVEAYRRDATSKDQLISELKATRKRLDSELK--------ELR--------QELMQVHGEKRAAEAELSRLHREAAQVR-- 920
Cdd:PTZ00121 1153 RVEIARKAEDARKAEEARKAEDAKKAEAARKaeevrkaeELRkaedarkaEAARKAEEERKAEEARKAEDAKKAEAVKka 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 921 QQMADLEGHLQSAQKERDEMET----HLQSLQFDKEQMVAVTE----ANEVLKKQIEELQQEARKAitEQKQKMRRLGSD 992
Cdd:PTZ00121 1233 EEAKKDAEEAKKAEEERNNEEIrkfeEARMAHFARRQAAIKAEearkADELKKAEEKKKADEAKKA--EEKKKADEAKKK 1310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 993 LTSAQKEMKTKHKAYE-NAVGILSRRLQEALAAKEAADAELGQLRAQGGSGDSSLALHERIQALEAELQAVSHSKTLLEK 1071
Cdd:PTZ00121 1311 AEEAKKADEAKKKAEEaKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK 1390
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1072 ELQEVIALTSQELEESREKVLELEDELQESRGFRKK---IKRLEESNKKL-----ALELE---HEKGKLTGLGQSNAALR 1140
Cdd:PTZ00121 1391 KKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKaeeKKKADEAKKKAeeakkADEAKkkaEEAKKAEEAKKKAEEAK 1470
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1141 EHNSILETALAKREADlvHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAA 1220
Cdd:PTZ00121 1471 KADEAKKKAEEAKKAD--EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1221 slelSEVKK--ELQAKEHLVQKLQAEADDLQIREGKHSQEIAQfQAElaEARVQLQLLQKQLDEQLSKQPVGNQEMENLK 1298
Cdd:PTZ00121 1549 ----DELKKaeELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK-KAE--EARIEEVMKLYEEEKKMKAEEAKKAEEAKIK 1621
|
570 580 590
....*....|....*....|....*....|...
gi 1622847816 1299 WEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQ 1331
Cdd:PTZ00121 1622 AEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
831-1370 |
2.43e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.73 E-value: 2.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 831 QVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRR------DATSKDQLISELKATRKRLDSELKELrqELMQVHGEKRA 904
Cdd:TIGR00618 213 MPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQkreaqeEQLKKQQLLKQLRARIEELRAQEAVL--EETQERINRAR 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 905 AEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQ 984
Cdd:TIGR00618 291 KAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREI 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 985 KMRRLG-SDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGSGDSSLALH-ERIQALEAELQAV 1062
Cdd:TIGR00618 371 SCQQHTlTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQqRYAELCAAAITCT 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1063 SHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREH 1142
Cdd:TIGR00618 451 AQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRM 530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1143 NSILET--ALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAA 1220
Cdd:TIGR00618 531 QRGEQTyaQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDML 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1221 SLELSEVKKELQAKEHLVQKLQaeaddlqiREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQLSKQpvgnqeMENLKWE 1300
Cdd:TIGR00618 611 ACEQHALLRKLQPEQDLQDVRL--------HLQQCSQELALKLTALHALQLTLTQERVREHALSIRV------LPKELLA 676
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847816 1301 VDQ-KEREIQSLKQQLdlteqqgRKELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKT 1370
Cdd:TIGR00618 677 SRQlALQKMQSEKEQL-------TYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDA 740
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
738-1266 |
2.70e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.66 E-value: 2.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 738 QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRgarRLEEGTEETSET 817
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNR---YESEIKTAESDL 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 818 LEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFlqqkvmveAYRRDATSKDQLISELKATRKRLDSELKELrqelmq 897
Cdd:PRK01156 266 SMELEKNNYYKELEERHMKIINDPVYKNRNYINDYF--------KYKNDIENKKQILSNIDAEINKYHAIIKKL------ 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 898 vhgekraaeAELSRLHREAAQVRQQMADLEghlqsaqKERDEMEThlqslqfDKEQMVAVTEANEVLKKQIEELQQEARK 977
Cdd:PRK01156 332 ---------SVLQKDYNDYIKKKSRYDDLN-------NQILELEG-------YEMDYNSYLKSIESLKKKIEEYSKNIER 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 978 AITEQKQKMRRLGSD---LTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRAQGGS------------- 1041
Cdd:PRK01156 389 MSAFISEILKIQEIDpdaIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCpvcgttlgeeksn 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1042 ------GDSSLALHERIQALEAELQAVSHSKTLLEKELQEviaLTSQELEESREKVLELEDELQESRGFRKKIKRLEESN 1115
Cdd:PRK01156 469 hiinhyNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEY---LESEEINKSINEYNKIESARADLEDIKIKINELKDKH 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1116 KKL-ALELEHEKGKLTGLGQSNAALREHNSI----------------------LETALAKREADLVHLNLQVQAVLQRKE 1172
Cdd:PRK01156 546 DKYeEIKNRYKSLKLEDLDSKRTSWLNALAVislidietnrsrsneikkqlndLESRLQEIEIGFPDDKSYIDKSIREIE 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1173 EEDRQM---KQLVQALQASLEKEKEKVNSLKEQVAAAK-VEAGHNRRHVKAASLE--LSEVKKELQAKEHLVQKLQAEAD 1246
Cdd:PRK01156 626 NEANNLnnkYNEIQENKILIEKLRGKIDNYKKQIAEIDsIIPDLKEITSRINDIEdnLKKSRKALDDAKANRARLESTIE 705
|
570 580
....*....|....*....|
gi 1622847816 1247 DLQIREGKHSQEIAQFQAEL 1266
Cdd:PRK01156 706 ILRTRINELSDRINDINETL 725
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
874-1209 |
2.95e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.89 E-value: 2.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 874 ISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQ 953
Cdd:COG4372 33 LRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 954 MVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELG 1033
Cdd:COG4372 113 LQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEAEQALDELLKEA 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1034 QLRAQGGSGDSSLALHERIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKI--KRL 1111
Cdd:COG4372 193 NRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAIlvEKD 272
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1112 EESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEK 1191
Cdd:COG4372 273 TEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLLD 352
|
330
....*....|....*...
gi 1622847816 1192 EKEKVNSLKEQVAAAKVE 1209
Cdd:COG4372 353 NDVLELLSKGAEAGVADG 370
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
494-1001 |
3.07e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 45.48 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 494 DLQNMLEAKNaSLASSNndLQVAEEQYQRLVAKVED----MQKSMLSKDNTVHDLR-------QQMTALQSQLQQVQLER 562
Cdd:pfam05483 268 DKANQLEEKT-KLQDEN--LKELIEKKDHLTKELEDikmsLQRSMSTQKALEEDLQiatkticQLTEEKEAQMEELNKAK 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 563 ATLTSKLKASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAH--IQVGQMTQAGLLEHLKLENVSLSQQLTETQHRSM 640
Cdd:pfam05483 345 AAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKksSELEEMTKFKNNKEVELEELKKILAEDEKLLDEK 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 641 KEKGRIAAQLQGIEADML------DQEAAFLQIQ-EAKTMVEEDLQRRLEEF--EGERERLQRMADSAASLEQQLEQVKL 711
Cdd:pfam05483 425 KQFEKIAEELKGKEQELIfllqarEKEIHDLEIQlTAIKTSEEHYLKEVEDLktELEKEKLKNIELTAHCDKLLLENKEL 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 712 TllqrdqqlealqQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEkiiLEAALQ 791
Cdd:pfam05483 505 T------------QEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDE---VKCKLD 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 792 AAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKD 871
Cdd:pfam05483 570 KSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAK 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 872 QLISELKATRKRlDSELKELRQELMQVHGEKRAAEA-ELSRLHRE-----AAQVRQQMADLEGHLQSAQKERDEMETHLQ 945
Cdd:pfam05483 650 QKFEEIIDNYQK-EIEDKKISEEKLLEEVEKAKAIAdEAVKLQKEidkrcQHKIAEMVALMEKHKHQYDKIIEERDSELG 728
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847816 946 SLQFDKEQMVAVTEANEVLKKQIEELQQEARKAIT---EQKQKMRRLGSDLTSAQKEMK 1001
Cdd:pfam05483 729 LYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEiekEEKEKLKMEAKENTAILKDKK 787
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
674-1157 |
3.34e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 45.28 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 674 VEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEAL------------ 741
Cdd:PRK01156 174 VIDMLRAEISNIDYLEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALnelssledmknr 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 742 --------QSREQSLDALQTHYDELQARLGELQGEAA--SREDTI--CLLQNEKIILEAALQAAKSGKEEFDRGARRLEE 809
Cdd:PRK01156 254 yeseiktaESDLSMELEKNNYYKELEERHMKIINDPVykNRNYINdyFKYKNDIENKKQILSNIDAEINKYHAIIKKLSV 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 810 GTEETSETLEKLREELAIKsgqveHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISEL----KATRKRLD 885
Cdd:PRK01156 334 LQKDYNDYIKKKSRYDDLN-----NQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEIlkiqEIDPDAIK 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 886 SELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGH------------------LQSAQKERDEMETHLQSL 947
Cdd:PRK01156 409 KELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQsvcpvcgttlgeeksnhiINHYNEKKSRLEEKIREI 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 948 QFDKEqmvAVTEANEVLKKQIEELQ-QEARKAITEQKQkMRRLGSDLTS---AQKEMKTKHKAYENA--------VGIL- 1014
Cdd:PRK01156 489 EIEVK---DIDEKIVDLKKRKEYLEsEEINKSINEYNK-IESARADLEDikiKINELKDKHDKYEEIknrykslkLEDLd 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1015 SRRLQEALAAKEAADAELGQLRAQGGSGDSSLA-LHERIQALEAELQAV-SHSKTLLEKELQEVIALTSQ---------E 1083
Cdd:PRK01156 565 SKRTSWLNALAVISLIDIETNRSRSNEIKKQLNdLESRLQEIEIGFPDDkSYIDKSIREIENEANNLNNKyneiqenkiL 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1084 LEESREKVLELEDELQESRGFRK-------KIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREAD 1156
Cdd:PRK01156 645 IEKLRGKIDNYKKQIAEIDSIIPdlkeitsRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINET 724
|
.
gi 1622847816 1157 L 1157
Cdd:PRK01156 725 L 725
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
748-910 |
3.49e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 748 LDALQTHYDELQARLGELQGEAASredticlLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREEL-- 825
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAE-------LEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLgn 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 826 AIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAT----RKRLDSELKELRQELMQVHGE 901
Cdd:COG1579 85 VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAEleekKAELDEELAELEAELEELEAE 164
|
....*....
gi 1622847816 902 KRAAEAELS 910
Cdd:COG1579 165 REELAAKIP 173
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
526-1264 |
3.53e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 526 KVEDMQKSmLSKDNTVHD-----LRQQMTALQSQLQQVQLERATLtsklkasqAEISSLQSVRQwyqqqlalaQEARVRL 600
Cdd:pfam15921 86 QVKDLQRR-LNESNELHEkqkfyLRQSVIDLQTKLQEMQMERDAM--------ADIRRRESQSQ---------EDLRNQL 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 601 QGEMAHIQVGQMTQAGLLEhlklenvSLSQQLTETQHRSMKEKGriaaQLQGIEADMLD-QEAAFLQIQEAKTM------ 673
Cdd:pfam15921 148 QNTVHELEAAKCLKEDMLE-------DSNTQIEQLRKMMLSHEG----VLQEIRSILVDfEEASGKKIYEHDSMstmhfr 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 674 -VEEDLQRRLEEFEGErerLQRMADSAASLEQQLEQVKltlLQRDQQLEALQQEHLDLMKQLT---------LTQEALQS 743
Cdd:pfam15921 217 sLGSAISKILRELDTE---ISYLKGRIFPVEDQLEALK---SESQNKIELLLQQHQDRIEQLIseheveitgLTEKASSA 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 744 REQS------LDALQT-----------HYDELQARLGELQGE--AASR--EDTICLLQNEKIILEAALQAAKSGKEEFDR 802
Cdd:pfam15921 291 RSQAnsiqsqLEIIQEqarnqnsmymrQLSDLESTVSQLRSElrEAKRmyEDKIEELEKQLVLANSELTEARTERDQFSQ 370
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 803 GARRLEEGTEETSETLEKLREELAIKsgqvehlqqetatlKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRK 882
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSLE--------------KEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLK 436
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 883 RLDSELK-ELRQELMQVHGEKRAAE------AELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQslqfDKEQMV 955
Cdd:pfam15921 437 AMKSECQgQMERQMAAIQGKNESLEkvssltAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQ----EKERAI 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 956 AVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEnavgILSRRLQEALAAKEAADAELGQL 1035
Cdd:pfam15921 513 EATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIE----ILRQQIENMTQLVGQHGRTAGAM 588
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1036 RAQGGS-----GDSSLALHE----------RIQALEAELQAVSHSKTLL----EKELQEVIALTSQ------ELEESREK 1090
Cdd:pfam15921 589 QVEKAQlekeiNDRRLELQEfkilkdkkdaKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQErdqllnEVKTSRNE 668
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1091 VLELEDELQE-SRGFRKKIKRLEESNKKLALELEHEKGKLTglgqsnaalREHNSILETALAKREADLVHLNLQVQAVLQ 1169
Cdd:pfam15921 669 LNSLSEDYEVlKRNFRNKSEEMETTTNKLKMQLKSAQSELE---------QTRNTLKSMEGSDGHAMKVAMGMQKQITAK 739
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1170 RKEEEDRQMK-QLVQALQASLEKE----KEKVNSLKEQVAAAKVE------------AGHNRRHVKAASLELSEVKKELQ 1232
Cdd:pfam15921 740 RGQIDALQSKiQFLEEAMTNANKEkhflKEEKNKLSQELSTVATEknkmagelevlrSQERRLKEKVANMEVALDKASLQ 819
|
810 820 830
....*....|....*....|....*....|....
gi 1622847816 1233 AKE--HLVQKLQAEADDLQIregKHSQEIAQFQA 1264
Cdd:pfam15921 820 FAEcqDIIQRQEQESVRLKL---QHTLDVKELQG 850
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
667-1051 |
5.36e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 5.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 667 IQEAKTMVEEDLQRrleefegERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQ------------- 733
Cdd:COG3096 262 ITEATNYVAADYMR-------HANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSAResdleqdyqaasd 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 734 -LTLTQEALQSREQsLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTE 812
Cdd:COG3096 335 hLNLVQTALRQQEK-IERYQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALDVQQTRAI 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 813 ETSETLEKLRE--------ELAIKSGQ------VEHLQQETATLKKQTQKI------KEQF-----LQQKVMVEAYRRDA 867
Cdd:COG3096 414 QYQQAVQALEKaralcglpDLTPENAEdylaafRAKEQQATEEVLELEQKLsvadaaRRQFekayeLVCKIAGEVERSQA 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 868 TSK-DQLISE------LKATRKRLDSELKELRQELMQvhgeKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEM 940
Cdd:COG3096 494 WQTaRELLRRyrsqqaLAQRLQQLRAQLAELEQRLRQ----QQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEEL 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 941 ETHLQSLQFDKEQMVAVTEAnevLKKQIEELQQEARKAITEQkQKMRRL----GSDLTSAQKEMKTKHKAYENAVGILSR 1016
Cdd:COG3096 570 EEQAAEAVEQRSELRQQLEQ---LRARIKELAARAPAWLAAQ-DALERLreqsGEALADSQEVTAAMQQLLEREREATVE 645
|
410 420 430
....*....|....*....|....*....|....*.
gi 1622847816 1017 RLQEALAAKEAADAELgQLRAQGGSGDSSL-ALHER 1051
Cdd:COG3096 646 RDELAARKQALESQIE-RLSQPGGAEDPRLlALAER 680
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
881-1268 |
5.41e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 881 RKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAqkerdemETHLQSLQfdkeQMVAVTEA 960
Cdd:COG3096 280 RRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAA-------SDHLNLVQ----TALRQQEK 348
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 961 NEVLKKQIEEL------QQEARKAITEQKQkMRRLGSDLTSAQ-KEMKTKHKAYENAVGILSRRlqealaakeaadaelg 1033
Cdd:COG3096 349 IERYQEDLEELterleeQEEVVEEAAEQLA-EAEARLEAAEEEvDSLKSQLADYQQALDVQQTR---------------- 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1034 qlraqggsgdsSLALHERIQALEaELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRLEE 1113
Cdd:COG3096 412 -----------AIQYQQAVQALE-KARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYE 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1114 SNKKLALELEHEkgklTGLGQSNAALREHNSilETALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQAS----- 1188
Cdd:COG3096 480 LVCKIAGEVERS----QAWQTARELLRRYRS--QQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQldaae 553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1189 -LEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREG---KHSQEIAQFQA 1264
Cdd:COG3096 554 eLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALERLREQSGealADSQEVTAAMQ 633
|
....
gi 1622847816 1265 ELAE 1268
Cdd:COG3096 634 QLLE 637
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
721-1006 |
5.60e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.73 E-value: 5.60e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 721 EALQQEHLDLMKQLTLTQEAlQSREQSLDALQTHYDELQARLGELQGEAAsredtiCLLQNEKIILEAALQAAKSGKEEF 800
Cdd:pfam17380 286 ERQQQEKFEKMEQERLRQEK-EEKAREVERRRKLEEAEKARQAEMDRQAA------IYAEQERMAMERERELERIRQEER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 801 DRGARRLEegteetsetleklREELAIKSGQVEHLQQetatLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKAT 880
Cdd:pfam17380 359 KRELERIR-------------QEEIAMEISRMRELER----LQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 881 RKRLDSELKELRQELMQVHGEKRAAEAElsRLHREAAQVRQQMADLeghlqsaqkERDEMETHLQSLQFDKEQMvAVTEA 960
Cdd:pfam17380 422 MEQIRAEQEEARQREVRRLEEERAREME--RVRLEEQERQQQVERL---------RQQEEERKRKKLELEKEKR-DRKRA 489
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1622847816 961 NEVLKKQIEELQQEARKAITEQKQKMRRLgsdltsaQKEMKTKHKA 1006
Cdd:pfam17380 490 EEQRRKILEKELEERKQAMIEEERKRKLL-------EKEMEERQKA 528
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
577-1316 |
5.69e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 577 SSLQSVRQWY--QQQLALAQEARVRLQGEMAHIQVGQMTQAGLLE----HLKLENVSLSQQltetqhrsmkEK-GRIAAQ 649
Cdd:COG3096 286 RALELRRELFgaRRQLAEEQYRLVEMARELEELSARESDLEQDYQaasdHLNLVQTALRQQ----------EKiERYQED 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 650 LQGIEADMLDQEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLqrmadsaASLEQQLEQVKLTLLQRDQQLEALQQehld 729
Cdd:COG3096 356 LEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQL-------ADYQQALDVQQTRAIQYQQAVQALEK---- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 730 lmkqltlTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGArrlee 809
Cdd:COG3096 425 -------ARALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERSQ----- 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 810 gteETSETLEKLRE--ELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQL---ISELKATRKRL 884
Cdd:COG3096 493 ---AWQTARELLRRyrSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDAAEELeelLAELEAQLEEL 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 885 DSELKELRQELMQVHGEKRAAEAELSRLH------REAAQVRQQMADLEG-HLQSAQKERDEMET---HLQSLQFDKEQM 954
Cdd:COG3096 570 EEQAAEAVEQRSELRQQLEQLRARIKELAarapawLAAQDALERLREQSGeALADSQEVTAAMQQlleREREATVERDEL 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 955 VAvteANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKA-YENAV------GILSRRLQEALAAKEA 1027
Cdd:COG3096 650 AA---RKQALESQIERLSQPGGAEDPRLLALAERLGGVLLSEIYDDVTLEDApYFSALygparhAIVVPDLSAVKEQLAG 726
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1028 ADAELGQLRAQGG---SGDSSL---------------------------------ALHERIQALEAELQAVS--HSKTLL 1069
Cdd:COG3096 727 LEDCPEDLYLIEGdpdSFDDSVfdaeeledavvvklsdrqwrysrfpevplfgraAREKRLEELRAERDELAeqYAKASF 806
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1070 E-KELQEVIALTSQ----------------ELEESREKVLELEDELQesrgfrkkikRLEESNKKLALELEHEKGKLTGL 1132
Cdd:COG3096 807 DvQKLQRLHQAFSQfvgghlavafapdpeaELAALRQRRSELERELA----------QHRAQEQQLRQQLDQLKEQLQLL 876
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1133 gqsNAALREHNSILETALAKREADL---VHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEkekvnslkEQVAAAKVE 1209
Cdd:COG3096 877 ---NKLLPQANLLADETLADRLEELreeLDAAQEAQAFIQQHGKALAQLEPLVAVLQSDPEQF--------EQLQADYLQ 945
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1210 AGHNRRHVKAASLELSEVkkeLQAKEHL-----VQKLQAEAD-DLQIRegkhsQEIAQFQAELAEARVQLQLLQKQLDEQ 1283
Cdd:COG3096 946 AKEQQRRLKQQIFALSEV---VQRRPHFsyedaVGLLGENSDlNEKLR-----ARLEQAEEARREAREQLRQAQAQYSQY 1017
|
810 820 830
....*....|....*....|....*....|...
gi 1622847816 1284 lskqpvgNQEMENLKWEVDQKEREIQSLKQQLD 1316
Cdd:COG3096 1018 -------NQVLASLKSSRDAKQQTLQELEQELE 1043
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1182-1403 |
5.73e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 5.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1182 VQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKHSQEIAQ 1261
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1262 FQAELAEARVQLQLLQKQLDEQLSKQPVG---NQE--------MENLKWEVDQKEREIQSLKQQLDLTEQQgRKELEGLQ 1330
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLAlllSPEdfldavrrLQYLKYLAPARREQAEELRADLAELAAL-RAELEAER 173
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622847816 1331 QLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMKTLLQQNQQLKLDLRRGAAKTRKEPKGEASSSNPA 1403
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
848-1364 |
8.22e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 8.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 848 KIKEQFLQQKVMVEAYRRDATSKDQLIS-------ELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVR 920
Cdd:pfam05483 216 KLKEDHEKIQHLEEEYKKEINDKEKQVSllliqitEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLT 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 921 QQMADLEGHLQSAQKERDEMEthlQSLQFDKEQMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEM 1000
Cdd:pfam05483 296 KELEDIKMSLQRSMSTQKALE---EDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRL 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1001 KTKhkayENAVGILSRRLQEALAAKEAADAELGQLRAQggsgdsslalHERIQALEAELQAVSHSKTLLEKeLQEVIALT 1080
Cdd:pfam05483 373 EKN----EDQLKIITMELQKKSSELEEMTKFKNNKEVE----------LEELKKILAEDEKLLDEKKQFEK-IAEELKGK 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1081 SQELE---ESREKvlELEDELQESRGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSiletALAKREADL 1157
Cdd:pfam05483 438 EQELIfllQAREK--EIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENK----ELTQEASDM 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1158 V-HLNLQVQAVLQRKEEEDRQMKQLvqalqaslEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAaSLELSE-----VKKEL 1231
Cdd:pfam05483 512 TlELKKHQEDIINCKKQEERMLKQI--------ENLEEKEMNLRDELESVREEFIQKGDEVKC-KLDKSEenarsIEYEV 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1232 QAKEHLVQKLQAEADDLQIREGKHSQEIAQFQAElaearvqlqllqkqLDEQLSKQPVGNQEMENLKWEVDQKEREIQSL 1311
Cdd:pfam05483 583 LKKEKQMKILENKCNNLKKQIENKNKNIEELHQE--------------NKALKKKGSAENKQLNAYEIKVNKLELELASA 648
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847816 1312 KQQLDLTEQQGRKELE----GLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSEL 1364
Cdd:pfam05483 649 KQKFEEIIDNYQKEIEdkkiSEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHKIAEM 705
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
843-1016 |
8.53e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 44.27 E-value: 8.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 843 KKQTQKIKEQFLQQK----VMVEAY-------RRDATSKD--QLISELKATRKRLDSELKELRQELMQVHGEKRAAEAEL 909
Cdd:TIGR01612 1506 AKAIEKNKELFEQYKkdvtELLNKYsalaiknKFAKTKKDseIIIKEIKDAHKKFILEAEKSEQKIKEIKKEKFRIEDDA 1585
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 910 S---RLHREAAQVRQQMADLEGHL----------QSAQKERDEMETHLQSLQFDKE--QMVAVTEANEVLKKQIEELQQE 974
Cdd:TIGR01612 1586 AkndKSNKAAIDIQLSLENFENKFlkisdikkkiNDCLKETESIEKKISSFSIDSQdtELKENGDNLNSLQEFLESLKDQ 1665
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1622847816 975 aRKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYEnaVGILSR 1016
Cdd:TIGR01612 1666 -KKNIEDKKKELDELDSEIEKIEIDVDQHKKNYE--IGIIEK 1704
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
583-977 |
8.58e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 44.18 E-value: 8.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 583 RQWY--QQQLALAQEARVRLQGEMAhiqvgqmTQAGLLEHLKLENVSLS--QQLTETQHRSMKEKGRIAAQLQGIEADML 658
Cdd:PRK04863 293 RELYtsRRQLAAEQYRLVEMARELA-------ELNEAESDLEQDYQAASdhLNLVQTALRQQEKIERYQADLEELEERLE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 659 DQEAAflqIQEAKTMVEEdLQRRLEEFEGERERLQ-RMADsaasLEQQLEQVKLTLLQRDQQLEALQQehldlmkqltlT 737
Cdd:PRK04863 366 EQNEV---VEEADEQQEE-NEARAEAAEEEVDELKsQLAD----YQQALDVQQTRAIQYQQAVQALER-----------A 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 738 QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRgarrleegTEETSET 817
Cdd:PRK04863 427 KQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSR--------SEAWDVA 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 818 LEKLR--EELAIKSGQVEHLQQETATLKkqtQKIKEQFLQQKVMVEAYRR------DATSKDQLISELKATRKRLDSELK 889
Cdd:PRK04863 499 RELLRrlREQRHLAEQLQQLRMRLSELE---QRLRQQQRAERLLAEFCKRlgknldDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 890 ELRQELMQVHGEKRAAEAELSRLHREAAQVRQ---QMADLEGHLQSAQKERDEMETHLQSLQfdkEQMVAVTEANEVLKK 966
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAaqdALARLREQSGEEFEDSQDVTEYMQQLL---ERERELTVERDELAA 652
|
410
....*....|.
gi 1622847816 967 QIEELQQEARK 977
Cdd:PRK04863 653 RKQALDEEIER 663
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
412-1249 |
1.09e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 43.63 E-value: 1.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 412 QEEMLQVLKEK-MRLEGQLEALSLEASQALKEKAELQAQLAAvSTKLQAQVEcshssqqrqdSLSSEVDTLKQscwDLER 490
Cdd:pfam01576 10 KEEELQKVKERqQKAESELKELEKKHQQLCEEKNALQEQLQA-ETELCAEAE----------EMRARLAARKQ---ELEE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 491 AMTDLQNMLEAKnaslassnndlqvaEEQYQRLVAKVEDMQKSMLskdntvhDLRQQMTALQSQLQQVQLERATLTSKLK 570
Cdd:pfam01576 76 ILHELESRLEEE--------------EERSQQLQNEKKKMQQHIQ-------DLEEQLDEEEAARQKLQLEKVTTEAKIK 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 571 ASQAEISSLQSVRQWYQQQLALAQEARVRLQGEMAHiqvgQMTQAGLLEHLKLENVSLSQQLTETQHRsmKEKGRiaaQL 650
Cdd:pfam01576 135 KLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAE----EEEKAKSLSKLKNKHEAMISDLEERLKK--EEKGR---QE 205
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 651 QGIEADMLDQEAAFLQIQEAktmveeDLQRRLEEFEGererlqrmadSAASLEQQLEQVKLTLLQRDQQLEALQQEHLDL 730
Cdd:pfam01576 206 LEKAKRKLEGESTDLQEQIA------ELQAQIAELRA----------QLAKKEEELQAALARLEEETAQKNNALKKIREL 269
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 731 MKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTICLLQNEKIILEAAL-QAAKSGKEEFDRGARRLEE 809
Cdd:pfam01576 270 EAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVtELKKALEEETRSHEAQLQE 349
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 810 GTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQ---FLQQKVMVEAYRRDATSKDQLI----SELKATRK 882
Cdd:pfam01576 350 MRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAElrtLQQAKQDSEHKRKKLEGQLQELqarlSESERQRA 429
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 883 RLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFDKEQMVAVTEANE 962
Cdd:pfam01576 430 ELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEE 509
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 963 VLKKQIEELQQEARKAITEQKQKM--------------RRLGSDLTSAQKEMKTKHKAYENaVGILSRRLQEALAAKEAA 1028
Cdd:pfam01576 510 EAKRNVERQLSTLQAQLSDMKKKLeedagtlealeegkKRLQRELEALTQQLEEKAAAYDK-LEKTKNRLQQELDDLLVD 588
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1029 DAELGQL-----------------------------------------------RAQGGSGDSSLALHERIQALEAELQA 1061
Cdd:pfam01576 589 LDHQRQLvsnlekkqkkfdqmlaeekaisaryaeerdraeaeareketralslaRALEEALEAKEELERTNKQLRAEMED 668
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1062 VSHSKTLLEK---ELQEVIALTSQELEESREKVLELEDELQESRGFRkkiKRLEESNKKLALELEHEKGKLTGLG----- 1133
Cdd:pfam01576 669 LVSSKDDVGKnvhELERSKRALEQQVEEMKTQLEELEDELQATEDAK---LRLEVNMQALKAQFERDLQARDEQGeekrr 745
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1134 QSNAALREHNSILE----------TALAKREADLVHLNLQVQAVLQRKEEEDRQMKQLvQALQASLEKEKEKVNSLKEQV 1203
Cdd:pfam01576 746 QLVKQVRELEAELEderkqraqavAAKKKLELDLKELEAQIDAANKGREEAVKQLKKL-QAQMKDLQRELEEARASRDEI 824
|
890 900 910 920
....*....|....*....|....*....|....*....|....*.
gi 1622847816 1204 AAAKVEaghNRRHVKAASLELSEVKKELQAKEHLVQKLQAEADDLQ 1249
Cdd:pfam01576 825 LAQSKE---SEKKLKNLEAELLQLQEDLAASERARRQAQQERDELA 867
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
676-950 |
1.59e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 43.40 E-value: 1.59e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 676 EDLQRRLEEFEGERERLQRMADS---------AASLEQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQ 746
Cdd:COG3096 795 DELAEQYAKASFDVQKLQRLHQAfsqfvgghlAVAFAPDPEAELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQ 874
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 747 SLDALQTHY-----DELQARLGELQGE-AASREDTICLLQNEKII--LEAALQAAKSGKEEFDRGARRLEEGTEETSETL 818
Cdd:COG3096 875 LLNKLLPQAnlladETLADRLEELREElDAAQEAQAFIQQHGKALaqLEPLVAVLQSDPEQFEQLQADYLQAKEQQRRLK 954
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 819 EKLrEELAIKSGQVEHLQ-QETATLKKQTQKIKEQFLQQKVMVEAYRRDA-----------TSKDQLISELKATRKRLDS 886
Cdd:COG3096 955 QQI-FALSEVVQRRPHFSyEDAVGLLGENSDLNEKLRARLEQAEEARREAreqlrqaqaqySQYNQVLASLKSSRDAKQQ 1033
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847816 887 ELKELRQEL--MQVHGEKRA---AEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFD 950
Cdd:COG3096 1034 TLQELEQELeeLGVQADAEAeerARIRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAERD 1102
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
1216-1351 |
1.97e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 42.34 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1216 HVKA----ASLELSEVKKELQAKEHLVQKLQAEADDLQIREGKhSQEIAQFQAEL--AEARVQLQLLQKQLDEQLSKQPV 1289
Cdd:COG1566 66 RVKKgqvlARLDPTDLQAALAQAEAQLAAAEAQLARLEAELGA-EAEIAAAEAQLaaAQAQLDLAQRELERYQALYKKGA 144
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1622847816 1290 GNQ-EMENLKWEVDQKEREIQSLKQQLDLTEQQ--GRKELEGLQQLLQNVKSELEMAQEDLSMTQ 1351
Cdd:COG1566 145 VSQqELDEARAALDAAQAQLEAAQAQLAQAQAGlrEEEELAAAQAQVAQAEAALAQAELNLARTT 209
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
676-1013 |
2.08e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 676 EDLQRRLEEFEGERERLQRMADSAASL-------------EQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQ 742
Cdd:PRK04863 796 EELAERYATLSFDVQKLQRLHQAFSRFigshlavafeadpEAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLS 875
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 743 SREQSLDALQTHYDE-LQARLGELQGEaasredticllqnekiiLEAALQAAKSgkeefdrgARRLEEGTEETSETLEKL 821
Cdd:PRK04863 876 ALNRLLPRLNLLADEtLADRVEEIREQ-----------------LDEAEEAKRF--------VQQHGNALAQLEPIVSVL 930
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 822 REELAiksgQVEHLQQETATLKKQTQKIKEQFLQQKVMVEayRRDATSKDQLISELKAtrkrlDSELKE-LRQELMQVHG 900
Cdd:PRK04863 931 QSDPE----QFEQLKQDYQQAQQTQRDAKQQAFALTEVVQ--RRAHFSYEDAAEMLAK-----NSDLNEkLRQRLEQAEQ 999
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 901 EKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQFdkeqmVAVTEANEVLKKQIEELQQEAR---- 976
Cdd:PRK04863 1000 ERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGV-----PADSGAEERARARRDELHARLSanrs 1074
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 1622847816 977 ------KAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGI 1013
Cdd:PRK04863 1075 rrnqleKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
842-1003 |
2.14e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 2.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 842 LKKQTQKIKEQFLQQKVMVEAYRRDatskdQLISELKATRKRLDSELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQ 921
Cdd:COG3206 180 LEEQLPELRKELEEAEAALEEFRQK-----NGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPD 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 922 QMADLEGH--LQSAQKERDEMETHLQSLQ--FDKE--QMVAVTEANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTS 995
Cdd:COG3206 255 ALPELLQSpvIQQLRAQLAELEAELAELSarYTPNhpDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQA 334
|
....*...
gi 1622847816 996 AQKEMKTK 1003
Cdd:COG3206 335 QLAQLEAR 342
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
431-998 |
2.37e-03 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 42.43 E-value: 2.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 431 ALSLEASQALKEKAELQAQLAAVSTKLQAQV----ECSHSSQQRQDSLSSEVDTLKqscwdleRAMTDLQNMLEAKNASL 506
Cdd:pfam07111 52 SLELEGSQALSQQAELISRQLQELRRLEEEVrllrETSLQQKMRLEAQAMELDALA-------VAEKAGQAEAEGLRAAL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 507 ASSNNDLQVAEEQYQRLVAKVEDMQKSMLSKDNTVHDlrqqmtalqsqlqqvqLERATLTSKLKASQAEISSLQSVRQWY 586
Cdd:pfam07111 125 AGAEMVRKNLEEGSQRELEEIQRLHQEQLSSLTQAHE----------------EALSSLTSKAEGLEKSLNSLETKRAGE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 587 QQQLALAQEARVRLQGEMAHIQVGQMTQAGLLEHLKlenVSLSQQLTETQHRSM--KEKGRIAAQLQGIEADMLDqeaaf 664
Cdd:pfam07111 189 AKQLAEAQKEAELLRKQLSKTQEELEAQVTLVESLR---KYVGEQVPPEVHSQTweLERQELLDTMQHLQEDRAD----- 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 665 lqIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQ--------QLEALQQEHLDLMKQltl 736
Cdd:pfam07111 261 --LQATVELLQVRVQSLTHMLALQEEELTRKIQPSDSLEPEFPKKCRSLLNRWRekvfalmvQLKAQDLEHRDSVKQ--- 335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 737 tqealqsreqsldalqthydelqarlgeLQGEAASREDTICLLQNEKIILEAALQaAKSGKEEFDRgarrleegteetse 816
Cdd:pfam07111 336 ----------------------------LRGQVAELQEQVTSQSQEQAILQRALQ-DKAAEVEVER-------------- 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 817 tleklreeLAIKSGQVEhLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQELM 896
Cdd:pfam07111 373 --------MSAKGLQME-LSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQIWLETTMTRVEQAVARIPSLSNRLSYAVR 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 897 QVHGEK--RAAEAELSRLHREAAQVRQQM----ADLEGHLQSAQKERDEMETHLQ-SLQFDKEQMVAVTEANEVLKKQIE 969
Cdd:pfam07111 444 KVHTIKglMARKVALAQLRQESCPPPPPAppvdADLSLELEQLREERNRLDAELQlSAHLIQQEVGRAREQGEAERQQLS 523
|
570 580
....*....|....*....|....*....
gi 1622847816 970 ELQQEARKAITEQKQKMRRLGSDLTSAQK 998
Cdd:pfam07111 524 EVAQQLEQELQRAQESLASVGQQLEVARQ 552
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
742-1351 |
2.53e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 42.50 E-value: 2.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 742 QSREQSLdaLQTHYDELQARLGELQGEAASREDTICLLQNekiILEAALQAAKSGKEEFDRGARrleegteetsetlekl 821
Cdd:pfam10174 128 QAKELFL--LRKTLEEMELRIETQKQTLGARDESIKKLLE---MLQSKGLPKKSGEEDWERTRR---------------- 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 822 reeLAIKSGQVEHLQQETATLKKQTQKIKE------QFLQQKVMVEAYRRDATSKDQLISELKATRKRLDSELKELRQEL 895
Cdd:pfam10174 187 ---IAEAEMQLGHLEVLLDQKEKENIHLREelhrrnQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNG 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 896 MqVHGEKRAAEAELSRLHREAAQ-VRQQMADLEGHLQSAQKERDEMETHLQSL--QFD---------KEQMVAVTEANEV 963
Cdd:pfam10174 264 L-LHTEDREEEIKQMEVYKSHSKfMKNKIDQLKQELSKKESELLALQTKLETLtnQNSdckqhievlKESLTAKEQRAAI 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 964 LKKQIEELQ---QEARKAITEQKQKMRRLGSD---LTSAQKEMKTKHKAYENAVGILSRRLQEALAAKEAADAELGQLRa 1037
Cdd:pfam10174 343 LQTEVDALRlrlEEKESFLNKKTKQLQDLTEEkstLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLK- 421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1038 qggsgdsslalhERIQALEAELQAVSHSKTLLEKELQE----VIALTSQELEESREKVLELEDelqesrgFRKKIKRLEE 1113
Cdd:pfam10174 422 ------------ERVKSLQTDSSNTDTALTTLEEALSEkeriIERLKEQREREDRERLEELES-------LKKENKDLKE 482
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1114 snkklalELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLNLQVQavlQRKEEEDRQMKQLVQALQASLEKEK 1193
Cdd:pfam10174 483 -------KVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVE---QKKEECSKLENQLKKAHNAEEAVRT 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1194 -----EKVNSLKEQVAAAKVEAGHNRRHVKaaslELSEVKKELQAKEHLVQKLQAEADDLQIREGK-HSQEIAQFQAela 1267
Cdd:pfam10174 553 npeinDRIRLLEQEVARYKEESGKAQAEVE----RLLGILREVENEKNDKDKKIAELESLTLRQMKeQNKKVANIKH--- 625
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1268 earvqlqllqkqldeqlskqpvGNQEMENLKWEVDQKEReiqslKQQLDLTEQQGRKELEGLQQLLQNVKSELEMAQEDL 1347
Cdd:pfam10174 626 ----------------------GQQEMKKKGAQLLEEAR-----RREDNLADNSQQLQLEELMGALEKTRQELDATKARL 678
|
....
gi 1622847816 1348 SMTQ 1351
Cdd:pfam10174 679 SSTQ 682
|
|
| CCDC22 |
pfam05667 |
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 ... |
627-912 |
2.68e-03 |
|
Coiled-coil domain-containing protein 22; Human coiled-coil domain-containing protein 22 (CCDC22) is involved in regulation of NF-kappa-B signalling; the function may involve association with COMMD8 and a CUL1-dependent E3 ubiquitin ligase complex. It is part of the OMMD/CCDC22/CCDC93 (CCC) complex, which interacts with the multisubunit WASH complex required for endosomal deposition of F-actin and cargo trafficking in conjunction with the retromer. This entry also includes CCDC22 homologs from animals and plants.
Pssm-ID: 461708 [Multi-domain] Cd Length: 600 Bit Score: 42.32 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 627 SLSQQLTETQHRSMKEKG---RIAAQLQgiEADMLDQEAAFLQIQEAktmveEDLQRRLEEFEGERERlqrmadsaasle 703
Cdd:pfam05667 230 GLASRLTPEEYRKRKRTKllkRIAEQLR--SAALAGTEATSGASRSA-----QDLAELLSSFSGSSTT------------ 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 704 qQLEQVKLTLLQRDQQLeALQQEHLDLMKQLTLT----QEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIclL 779
Cdd:pfam05667 291 -DTGLTKGSRFTHTEKL-QFTNEAPAATSSPPTKveteEELQQQREEELEELQEQLEDLESSIQELEKEIKKLESSI--K 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 780 QnekiiLEAALQAAKSGKEEfdrgarrleegTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKV- 858
Cdd:pfam05667 367 Q-----VEEELEELKEQNEE-----------LEKQYKVKKKTLDLLPDAEENIAKLQALVDASAQRLVELAGQWEKHRVp 430
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1622847816 859 MVEAYRRDATSKDQliSELKATRKRldSELKELRQELMQVHGEKRAAEAELSRL 912
Cdd:pfam05667 431 LIEEYRALKEAKSN--KEDESQRKL--EEIKELREKIKEVAEEAKQKEELYKQL 480
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
614-852 |
2.85e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 2.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 614 QAGLLEHLKLENVSLSQQLTETQHR---SMKEKGRIAAQLQGIEADMLDQEAaflQIQEAKTMVEEdLQRRLEEFEGERE 690
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKElaaLKKEEKALLKQLAALERRIAALAR---RIRALEQELAA-LEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 691 RLQrmadsaASLEQQLEQVK--LTLLQRDQQLEAL-----QQEHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLG 763
Cdd:COG4942 94 ELR------AELEAQKEELAelLRALYRLGRQPPLalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 764 ELQGEAASREDTICLLQNEKiileAALQAAKSGKEEfdrgarrleegteetseTLEKLREELAIKSGQVEHLQQETATLK 843
Cdd:COG4942 168 ELEAERAELEALLAELEEER----AALEALKAERQK-----------------LLARLEKELAELAAELAELQQEAEELE 226
|
....*....
gi 1622847816 844 KQTQKIKEQ 852
Cdd:COG4942 227 ALIARLEAE 235
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
887-1142 |
2.99e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 42.25 E-value: 2.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 887 ELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADL------------EGHLQSAQKERDEMETHLQSLQFDKEQM 954
Cdd:COG3096 837 ELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLnkllpqanlladETLADRLEELREELDAAQEAQAFIQQHG 916
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 955 VAVTEANEVLK------KQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEmktKHKAYENAVGILSR------RLQEAL 1022
Cdd:COG3096 917 KALAQLEPLVAvlqsdpEQFEQLQADYLQAKEQQRRLKQQIFALSEVVQRR---PHFSYEDAVGLLGEnsdlneKLRARL 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1023 AAKEAADAELG-QLRAQGGSGDSSlalHERIQALEAELQAVSHSKTLLEKELQEV-IALTSQELEESREKVLELEDELQE 1100
Cdd:COG3096 994 EQAEEARREAReQLRQAQAQYSQY---NQVLASLKSSRDAKQQTLQELEQELEELgVQADAEAEERARIRRDELHEELSQ 1070
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 1622847816 1101 SRGfrkkikRLEESNKKLAL---ELEHEKGKLTGLGQSNAALREH 1142
Cdd:COG3096 1071 NRS------RRSQLEKQLTRceaEMDSLQKRLRKAERDYKQEREQ 1109
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1177-1347 |
3.02e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 3.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1177 QMKQLVQALQAsLEKEKEKVNSLK------EQVAAAKVEAGHNRR-----HVKAASLELSEVKKELQAKEHLVQKLQAEA 1245
Cdd:COG4913 233 HFDDLERAHEA-LEDAREQIELLEpirelaERYAAARERLAELEYlraalRLWFAQRRLELLEAELEELRAELARLEAEL 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1246 DDLQIREGKHSQEIAQFQAELAEA------RVQLQLLQKQLDEQLSKQPVGNQE--MENLKWEVDQKEREIQSLKQQLDL 1317
Cdd:COG4913 312 ERLEARLDALREELDELEAQIRGNggdrleQLEREIERLERELEERERRRARLEalLAALGLPLPASAEEFAALRAEAAA 391
|
170 180 190
....*....|....*....|....*....|
gi 1622847816 1318 TEQQGRKELEGLQQLLQNVKSELEMAQEDL 1347
Cdd:COG4913 392 LLEALEEELEALEEALAEAEAALRDLRREL 421
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
514-772 |
3.09e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 514 QVAEEQYQRLVAKVEDMQKSMLSKDNTVHDLRQQ--MTALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLA 591
Cdd:COG3206 171 EEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLG 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 592 LAQEARVRLQGEmahiQVGQMTQAGLLEhLKLENVSLSQQLTEtQHRSMKEkgriaaqlqgieadmLDQeaaflQIQEAK 671
Cdd:COG3206 251 SGPDALPELLQS----PVIQQLRAQLAE-LEAELAELSARYTP-NHPDVIA---------------LRA-----QIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 672 TMVEEDLQRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEhldlmkqltltqealqsreqsLDAL 751
Cdd:COG3206 305 AQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLERE---------------------VEVA 363
|
250 260
....*....|....*....|.
gi 1622847816 752 QTHYDELQARLGELQGEAASR 772
Cdd:COG3206 364 RELYESLLQRLEEARLAEALT 384
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
656-766 |
3.27e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.99 E-value: 3.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 656 DMLDQEAAFLQIqEAKTMVEE--DLQRRLEEFEGERERLQRMADS-----AASLEQQLEQVKltllqrdQQLEALQ---Q 725
Cdd:COG0542 393 DLIDEAAARVRM-EIDSKPEEldELERRLEQLEIEKEALKKEQDEasferLAELRDELAELE-------EELEALKarwE 464
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 1622847816 726 EHLDLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQ 766
Cdd:COG0542 465 AEKELIEEIQELKEELEQRYGKIPELEKELAELEEELAELA 505
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
371-751 |
3.38e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 3.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 371 DVLQAAAAEHQDQGQEVNGEVRSRRESICSSVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQL 450
Cdd:pfam07888 45 ELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQR 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 451 AAVSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAEEQYQRLVAKVEDM 530
Cdd:pfam07888 125 AAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQR 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 531 QKSMLSKDNTVHDLRQQMTALQSQLQQVQLERATLTS---KLKASQAEISSLQSvrqwyqqQLALAQEARVRLQGEM--A 605
Cdd:pfam07888 205 DTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSlqeRLNASERKVEGLGE-------ELSSMAAQRDRTQAELhqA 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 606 HIQVGQMTqagllehLKLENVSLsqQLTETQHRSMKEKgriAAQLQGIEADMLDQEAAFLQIQEAKTMV-EEDLQRRLEE 684
Cdd:pfam07888 278 RLQAAQLT-------LQLADASL--ALREGRARWAQER---ETLQQSAEADKDRIEKLSAELQRLEERLqEERMEREKLE 345
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1622847816 685 FEGERER-LQRMADSAASLEQQLEQVKLTLLQRDQ-QLEALQQEHLDLMKQLTLTQEALQSREQSLDAL 751
Cdd:pfam07888 346 VELGREKdCNRVQLSESRRELQELKASLRVAQKEKeQLQAEKQELLEYIRQLEQRLETVADAKWSEAAL 414
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
401-532 |
3.45e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.49 E-value: 3.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 401 SVSLESSAAETQEEMLQVLKEKMRLEGQLEALSLEASQALKEKAELQAQLAAvstklQAQVecSHSSQQRQDSLSSEVDT 480
Cdd:PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDS-----EKQV--SARALAQVELLNQQIAA 148
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 1622847816 481 LKQSCWDLERAMTDLQNMLEAKNASLASSNNDLQVAeeqyqrLVAKVEDMQK 532
Cdd:PRK09039 149 LRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA------LAQRVQELNR 194
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1089-1365 |
4.19e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 4.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1089 EKVLELEDELQESRGFRKKIKRLEE-------SNKKLALELEHEKGKLTGLGQSNAALREHNSILETALAKREADLVHLN 1161
Cdd:pfam02463 153 ERRLEIEEEAAGSRLKRKKKEALKKlieetenLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1162 LQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGHNRRHVKAASLELSEVKKELQAKEHLVQKL 1241
Cdd:pfam02463 233 KLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDD 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1242 QAEADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLDEQLSKqpVGNQEMENLKWEVDQKEREIQSLKQQLDLTEQQ 1321
Cdd:pfam02463 313 EEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEE--EEELEKLQEKLEQLEEELLAKKKLESERLSSAA 390
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 1622847816 1322 GRKELEGLQQL--LQNVKSELEMAQEDLSMTQKDKFMLQAKVSELK 1365
Cdd:pfam02463 391 KLKEEELELKSeeEKEAQLLLELARQLEDLLKEEKKEELEILEEEE 436
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
1081-1341 |
4.57e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 41.48 E-value: 4.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1081 SQELEESREKVLELEDELQES--RGFRKKIKRLEESNKKLALELEHEKGKLTGLGQSNAALREHNSILE-TALAKREADL 1157
Cdd:COG5185 248 LAQTSDKLEKLVEQNTDLRLEklGENAESSKRLNENANNLIKQFENTKEKIAEYTKSIDIKKATESLEEqLAAAEAEQEL 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1158 VHLNLQVQAVLQRKEEEdrqMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAghnrrHVKAASLELSEVKKEL-QAKEH 1236
Cdd:COG5185 328 EESKRETETGIQNLTAE---IEQGQESLTENLEAIKEEIENIVGEVELSKSSE-----ELDSFKDTIESTKESLdEIPQN 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1237 LVQKLQAEADDLQIREGKHSQEIAQFQAELAEAR-----VQLQLLQKQLDEQLSKQPVGNQEMENLKWEVDQKEREIQSL 1311
Cdd:COG5185 400 QRGYAQEILATLEDTLKAADRQIEELQRQIEQATssneeVSKLLNELISELNKVMREADEESQSRLEEAYDEINRSVRSK 479
|
250 260 270
....*....|....*....|....*....|
gi 1622847816 1312 KQQLDLTEQQGRKELEGLQQLLQNVKSELE 1341
Cdd:COG5185 480 KEDLNEELTQIESRVSTLKATLEKLRAKLE 509
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
957-1119 |
4.97e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 41.30 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 957 VTEANEVLKKQIEELQQEA----RKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAV----GILSRRLQEALAAKEAA 1028
Cdd:PRK12704 33 IKEAEEEAKRILEEAKKEAeaikKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLlqkeENLDRKLELLEKREEEL 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1029 DAELGQLRAQggsgdsslalHERIQALEAELQAVSHSktlLEKELQEVIALTSqelEESREKVLE-LEDELQESRGfrKK 1107
Cdd:PRK12704 113 EKKEKELEQK----------QQELEKKEEELEELIEE---QLQELERISGLTA---EEAKEILLEkVEEEARHEAA--VL 174
|
170
....*....|..
gi 1622847816 1108 IKRLEESNKKLA 1119
Cdd:PRK12704 175 IKEIEEEAKEEA 186
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
886-1102 |
5.03e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 40.67 E-value: 5.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 886 SELKELRQELMQVHGEKRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKE-----RDEMETHLQSLQFDKeQMVAVTEA 960
Cdd:pfam00038 54 KEIEDLRRQLDTLTVERARLQLELDNLRLAAEDFRQKYEDELNLRTSAENDlvglrKDLDEATLARVDLEA-KIESLKEE 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 961 NEVLKKQIEELQQEARKAITEQKQKMRR---LGSDLTSAQKEMKTKHKAyenavgiLSRRLQEALAAKEAADAELGQLRA 1037
Cdd:pfam00038 133 LAFLKKNHEEEVRELQAQVSDTQVNVEMdaaRKLDLTSALAEIRAQYEE-------IAAKNREEAEEWYQSKLEELQQAA 205
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1622847816 1038 QGGSGDSSLALHE------RIQALEAELQAVSHSKTLLEKELQEVIALTSQELEESREKVLELEDELQESR 1102
Cdd:pfam00038 206 ARNGDALRSAKEEitelrrTIQSLEIELQSLKKQKASLERQLAETEERYELQLADYQELISELEAELQETR 276
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
883-1019 |
5.12e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 5.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 883 RLDSELKELRQELmqvhgekRAAEAELSRLHREAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQF----DKEQMVAVT 958
Cdd:COG1579 14 ELDSELDRLEHRL-------KELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEArikkYEEQLGNVR 86
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1622847816 959 ------------EANEVLKKQIEELQQEARKAITEQKQKMRRLGSDLTSAQKEMKTKHKAYENAVGILSRRLQ 1019
Cdd:COG1579 87 nnkeyealqkeiESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELE 159
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
649-806 |
5.56e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 41.23 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 649 QLQGIEADMLDQEAaflqIQEAKTMVEEDLQRRLEEFEGERERlQRMADSAASLEQQLEQVKLtlLQRDQQLEALQQEHL 728
Cdd:PRK12705 29 QRLAKEAERILQEA----QKEAEEKLEAALLEAKELLLRERNQ-QRQEARREREELQREEERL--VQKEEQLDARAEKLD 101
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1622847816 729 DLMKQLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAAsREDTICLLQNEkiILEAALQAAKSGKEEFDRGARR 806
Cdd:PRK12705 102 NLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQA-RKLLLKLLDAE--LEEEKAQRVKKIEEEADLEAER 176
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
385-918 |
5.88e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 41.25 E-value: 5.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 385 QEVNGEVRSRRESIcSSVSLESSAAETQEEMLQVLKEKMRLE-GQLEALSLEASQALKEKAELQAQLAAVSTKLQAQVEC 463
Cdd:pfam05483 229 EEYKKEINDKEKQV-SLLLIQITEKENKMKDLTFLLEESRDKaNQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQR 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 464 SHSSQQR-QDSLSSEVDTLKQSCWDLERAMTD---------------------LQNMLEAKNASLASSNNDLQVAEEQYQ 521
Cdd:pfam05483 308 SMSTQKAlEEDLQIATKTICQLTEEKEAQMEElnkakaahsfvvtefeattcsLEELLRTEQQRLEKNEDQLKIITMELQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 522 RLVAKVEDMQKSMLSKDNTVHDLRqQMTALQSQLQQVQLERATLTSKLKASQAEISSLQSVRQWYQQQLALaQEARVRLQ 601
Cdd:pfam05483 388 KKSSELEEMTKFKNNKEVELEELK-KILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEI-QLTAIKTS 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 602 GEMAHIQVGQMTQAglLEHLKLENVSL---SQQLTETQHRSMKEKGRIAAQLQGIEADMLD---QEAAFLqiQEAKTMVE 675
Cdd:pfam05483 466 EEHYLKEVEDLKTE--LEKEKLKNIELtahCDKLLLENKELTQEASDMTLELKKHQEDIINckkQEERML--KQIENLEE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 676 EDLQRRlEEFEGERERLQrmadsaasleQQLEQVKLTLLQRDQQLEALQQEHLDLMKQLTLTQEALQSREQSLDALQTHY 755
Cdd:pfam05483 542 KEMNLR-DELESVREEFI----------QKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNI 610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 756 DELQARLGELQGEAASREDTICLLQNEKIILEAALQAAKSGKEEFDRGARRLEEGTEETSETLEKLREELAIKSGQVEHL 835
Cdd:pfam05483 611 EELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKL 690
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 836 QQETAtlKKQTQKIKEQFLQQKVMVEAYRRDATSKDQLI-------SELKATRKRLDSELKELRQELMQVHGEKRAAEAE 908
Cdd:pfam05483 691 QKEID--KRCQHKIAEMVALMEKHKHQYDKIIEERDSELglyknkeQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEE 768
|
570
....*....|
gi 1622847816 909 LSRLHREAAQ 918
Cdd:pfam05483 769 KEKLKMEAKE 778
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
660-1369 |
6.28e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.19 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 660 QEAAFLQIQEAKTMVEEDLQRRLEEFEGERERLQRMADSAASLEQ----------QLEQVKLTLLQ-RDQQLEALQQEHL 728
Cdd:TIGR00606 232 QLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSrkkqmekdnsELELKMEKVFQgTDEQLNDLYHNHQ 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 729 DLMK----QLTLTQEALQSREQSLDALQTHYDELQARLGELQGEAASREDTIclLQNEKIILEAALQAAKSGkeeFDRGA 804
Cdd:TIGR00606 312 RTVRekerELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHI--RARDSLIQSLATRLELDG---FERGP 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 805 RRLEEGTEETSETLEKLREELAIKSGQVEHLQQETATLKKQTQKIKEQFLQQKVMVEAYRRDATSKdqlISELKATRKRL 884
Cdd:TIGR00606 387 FSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKK---QEELKFVIKEL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 885 dSELKELRQELMQVHGEKRAAEAELSRLHR---------EAAQVRQQMADLEGHLQSAQKERDEMETHLQSLQfdkeQMV 955
Cdd:TIGR00606 464 -QQLEGSSDRILELDQELRKAERELSKAEKnsltetlkkEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRT----QME 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 956 AVTEANEVLKKQIEELQQEARKAITEQKQKM---RRLGSDLTSAQKEMKTKhkayENAVGILSRRLQEALAAKEAADAEL 1032
Cdd:TIGR00606 539 MLTKDKMDKDEQIRKIKSRHSDELTSLLGYFpnkKQLEDWLHSKSKEINQT----RDRLAKLNKELASLEQNKNHINNEL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1033 GQLRAQGGSGDSSLALHERIQALEAELQAVSHSKTLLEKE---LQEVIALTSQELEESREK----------VLELEDELQ 1099
Cdd:TIGR00606 615 ESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSSKQramLAGATAVYSQFITQLTDEnqsccpvcqrVFQTEAELQ 694
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1100 E--------SRGFRKKIKRLEESNKKLALELEHEKGKLTG-------LGQSNAALREHNSILETALAKREADLVHLNLQV 1164
Cdd:TIGR00606 695 EfisdlqskLRLAPDKLKSTESELKKKEKRRDEMLGLAPGrqsiidlKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLL 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1165 QAVLQrKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKVEAGhnrrhvkaaSLELSEVKKELQAKEHLVQKLQAE 1244
Cdd:TIGR00606 775 GTIMP-EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL---------DRTVQQVNQEKQEKQHELDTVVSK 844
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1245 ADDLQIREGKHSQEIAQFQAELAEARVQLQLLQKQLdeqlskqpvgnQEMENLKWEVDQKEREIQSLKQQLDLTEQQGRK 1324
Cdd:TIGR00606 845 IELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNL-----------QRRQQFEEQLVELSTEVQSLIREIKDAKEQDSP 913
|
730 740 750 760
....*....|....*....|....*....|....*....|....*
gi 1622847816 1325 ELEGLQQLLQNVKSELEMAQEDLSMTQKDKFMLQAKVSELKNNMK 1369
Cdd:TIGR00606 914 LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMK 958
|
|
| ATG16 |
pfam08614 |
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ... |
425-523 |
7.39e-03 |
|
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.
Pssm-ID: 462536 [Multi-domain] Cd Length: 176 Bit Score: 39.14 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 425 LEGQLEALSLEASQALKEKAELQAQLAAVSTKLQAQVECSHSSQQRQDSLSSEVDTLKQSCWDLERAMTDLQNMLEAKNA 504
Cdd:pfam08614 55 LEQLLAQLREELAELYRSRGELAQRLVDLNEELQELEKKLREDERRLAALEAERAQLEEKLKDREEELREKRKLNQDLQD 134
|
90
....*....|....*....
gi 1622847816 505 SLASSNNDLQVAEEQYQRL 523
Cdd:pfam08614 135 ELVALQLQLNMAEEKLRKL 153
|
|
| PRK05431 |
PRK05431 |
seryl-tRNA synthetase; Provisional |
1138-1233 |
7.63e-03 |
|
seryl-tRNA synthetase; Provisional
Pssm-ID: 235461 [Multi-domain] Cd Length: 425 Bit Score: 40.44 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1138 ALREHNSILETALAKReadlvHLNLQVQAVLQrKEEEDRQMKQLVQALQA----------SLEKEKEKVNSLKEQVAAAK 1207
Cdd:PRK05431 6 LIRENPEAVKEALAKR-----GFPLDVDELLE-LDEERRELQTELEELQAernalskeigQAKRKGEDAEALIAEVKELK 79
|
90 100
....*....|....*....|....*.
gi 1622847816 1208 VEaghnrrhVKAASLELSEVKKELQA 1233
Cdd:PRK05431 80 EE-------IKALEAELDELEAELEE 98
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
1072-1208 |
9.55e-03 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 40.58 E-value: 9.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1622847816 1072 ELQEVIALTSQELEESREKVLELEDELQESRGFRKKIKRleesnKKLALELEHEKGKLTGLGQSNAALREhnsiletalA 1151
Cdd:PRK00409 517 KLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEE-----KKEKLQEEEDKLLEEAEKEAQQAIKE---------A 582
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1622847816 1152 KREADLVHLNLQVQAVLQRKEEEDRQMKQLVQALQASLEKEKEKVNSLKEQVAAAKV 1208
Cdd:PRK00409 583 KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKV 639
|
|
| |
