NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|964139941|ref|XP_014764399|]
View 

nuclear envelope phosphatase-regulatory subunit 1 homolog isoform X1 [Drosophila ananassae]

Protein Classification

Tmemb_18A domain-containing protein( domain architecture ID 10561090)

Tmemb_18A domain-containing protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
Tmemb_18A pfam09771
Transmembrane protein 188; The function of this family of transmembrane proteins has not, as ...
 4-125 6.05e-70

Transmembrane protein 188; The function of this family of transmembrane proteins has not, as yet, been determined.


:

Pssm-ID: 401646  Cd Length: 118  Bit Score: 205.58  E-value: 6.05e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964139941    4 SACEDLKAFERRLTEVVSSYRPSTFRWRtsllVVLSAMSMCTAISAWYWLRDPRTVSVPLTESLWIHPVFTIATLTLIVL 83
Cdd:pfam09771   1 TACEDLKAFERRLTEVIASLQPSTTRWR----IVLGAISVCTAIGAWHWLTDPETSQVSFFQSLWNHPFFTISSITLILL 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 964139941   84 FILGIQKLVIAPQIITSRTRTVLGDFNMSCDDTGKLILKPRQ 125
Cdd:pfam09771  77 FLFGVHKRVVAPSIIASRTRSVLSDFNMSCDDTGKLILKPRP 118
 
Name Accession Description Interval E-value
Tmemb_18A pfam09771
Transmembrane protein 188; The function of this family of transmembrane proteins has not, as ...
 4-125 6.05e-70

Transmembrane protein 188; The function of this family of transmembrane proteins has not, as yet, been determined.


Pssm-ID: 401646  Cd Length: 118  Bit Score: 205.58  E-value: 6.05e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964139941    4 SACEDLKAFERRLTEVVSSYRPSTFRWRtsllVVLSAMSMCTAISAWYWLRDPRTVSVPLTESLWIHPVFTIATLTLIVL 83
Cdd:pfam09771   1 TACEDLKAFERRLTEVIASLQPSTTRWR----IVLGAISVCTAIGAWHWLTDPETSQVSFFQSLWNHPFFTISSITLILL 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 964139941   84 FILGIQKLVIAPQIITSRTRTVLGDFNMSCDDTGKLILKPRQ 125
Cdd:pfam09771  77 FLFGVHKRVVAPSIIASRTRSVLSDFNMSCDDTGKLILKPRP 118
 
Name Accession Description Interval E-value
Tmemb_18A pfam09771
Transmembrane protein 188; The function of this family of transmembrane proteins has not, as ...
 4-125 6.05e-70

Transmembrane protein 188; The function of this family of transmembrane proteins has not, as yet, been determined.


Pssm-ID: 401646  Cd Length: 118  Bit Score: 205.58  E-value: 6.05e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 964139941    4 SACEDLKAFERRLTEVVSSYRPSTFRWRtsllVVLSAMSMCTAISAWYWLRDPRTVSVPLTESLWIHPVFTIATLTLIVL 83
Cdd:pfam09771   1 TACEDLKAFERRLTEVIASLQPSTTRWR----IVLGAISVCTAIGAWHWLTDPETSQVSFFQSLWNHPFFTISSITLILL 76

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 964139941   84 FILGIQKLVIAPQIITSRTRTVLGDFNMSCDDTGKLILKPRQ 125
Cdd:pfam09771  77 FLFGVHKRVVAPSIIASRTRSVLSDFNMSCDDTGKLILKPRP 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH