|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
50-231 |
5.08e-59 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
:
Pssm-ID: 214560 Cd Length: 184 Bit Score: 200.66 E-value: 5.08e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 50 GFNLIHRLSLM-KTSAIKKIRNPKGP-LILRLG-AAPVTQPTRRVFPRGLPEEFALVLTLLLKKhthQKTWYLFQVTDAN 126
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 127 GYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVASVHVDCSSASSQPLGPRR--PMRPVG 204
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGqpPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 767902478 205 HVFLGLDAEQGKPVSFDLQQVHIYCDP 231
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
512-802 |
5.31e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.12 E-value: 5.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 512 TLPEGFQNFVGlpgkPGPKGEPGdPVPARGDPGIQGIKGEKGEPclscssvvgaqhlvsstgasgdvgspgfGLPGLPGR 591
Cdd:NF038329 105 ELDEGLQQLKG----DGEKGEPG-PAGPAGPAGEQGPRGDRGET----------------------------GPAGPAGP 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 592 AGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGK 671
Cdd:NF038329 152 PGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 672 QGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDgctacpslqgtvTDMAGRPGQPGPKGEQG 751
Cdd:NF038329 232 DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP------------VGPAGKDGQNGKDGLPG 299
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 767902478 752 PEgvGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLP 802
Cdd:NF038329 300 KD--GKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTPEVP 348
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
739-875 |
2.09e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 83.03 E-value: 2.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 739 GRPGQPGPKGEQGPEG-VGRPGKPGQPGLPGVQGPPGLKGVQGEPGPpgrgvQGPQGEPGAPGLPGIQGLPGPRGPPGPT 817
Cdd:NF038329 117 GEKGEPGPAGPAGPAGeQGPRGDRGETGPAGPAGPPGPQGERGEKGP-----AGPQGEAGPQGPAGKDGEAGAKGPAGEK 191
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767902478 818 GEKGAQGSPGVKGATGPVGPPGASVS---------------------GPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGE 875
Cdd:NF038329 192 GPQGPRGETGPAGEQGPAGPAGPDGEagpagedgpagpagdgqqgpdGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGP 270
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
337-605 |
4.61e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 78.79 E-value: 4.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 337 GGKGERGLPGPPGSKGEKGARGNDcvrispdaplqcaeGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKP 416
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDR--------------GETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 417 GRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGppglpgppgiglpgtpgdpggppgpkgdkgssgiPGKEGPGGKPGK 496
Cdd:NF038329 183 GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDG----------------------------------EAGPAGEDGPAG 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 497 PGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPArGDPGIQGIKGEKGEPCLSCSSvvGAQHLVSSTGASG 576
Cdd:NF038329 229 PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPD-GPDGKDGERGPVGPAGKDGQN--GKDGLPGKDGKDG 305
|
250 260
....*....|....*....|....*....
gi 767902478 577 DVGSPgfGLPGLPGRAGVPGLKGEKGNFG 605
Cdd:NF038329 306 QNGKD--GLPGKDGKDGQPGKDGLPGKDG 332
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
50-231 |
5.08e-59 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 200.66 E-value: 5.08e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 50 GFNLIHRLSLM-KTSAIKKIRNPKGP-LILRLG-AAPVTQPTRRVFPRGLPEEFALVLTLLLKKhthQKTWYLFQVTDAN 126
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 127 GYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVASVHVDCSSASSQPLGPRR--PMRPVG 204
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGqpPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 767902478 205 HVFLGLDAEQGKPVSFDLQQVHIYCDP 231
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
512-802 |
5.31e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.12 E-value: 5.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 512 TLPEGFQNFVGlpgkPGPKGEPGdPVPARGDPGIQGIKGEKGEPclscssvvgaqhlvsstgasgdvgspgfGLPGLPGR 591
Cdd:NF038329 105 ELDEGLQQLKG----DGEKGEPG-PAGPAGPAGEQGPRGDRGET----------------------------GPAGPAGP 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 592 AGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGK 671
Cdd:NF038329 152 PGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 672 QGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDgctacpslqgtvTDMAGRPGQPGPKGEQG 751
Cdd:NF038329 232 DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP------------VGPAGKDGQNGKDGLPG 299
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 767902478 752 PEgvGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLP 802
Cdd:NF038329 300 KD--GKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTPEVP 348
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
739-875 |
2.09e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 83.03 E-value: 2.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 739 GRPGQPGPKGEQGPEG-VGRPGKPGQPGLPGVQGPPGLKGVQGEPGPpgrgvQGPQGEPGAPGLPGIQGLPGPRGPPGPT 817
Cdd:NF038329 117 GEKGEPGPAGPAGPAGeQGPRGDRGETGPAGPAGPPGPQGERGEKGP-----AGPQGEAGPQGPAGKDGEAGAKGPAGEK 191
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767902478 818 GEKGAQGSPGVKGATGPVGPPGASVS---------------------GPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGE 875
Cdd:NF038329 192 GPQGPRGETGPAGEQGPAGPAGPDGEagpagedgpagpagdgqqgpdGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGP 270
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
337-605 |
4.61e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 78.79 E-value: 4.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 337 GGKGERGLPGPPGSKGEKGARGNDcvrispdaplqcaeGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKP 416
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDR--------------GETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 417 GRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGppglpgppgiglpgtpgdpggppgpkgdkgssgiPGKEGPGGKPGK 496
Cdd:NF038329 183 GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDG----------------------------------EAGPAGEDGPAG 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 497 PGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPArGDPGIQGIKGEKGEPCLSCSSvvGAQHLVSSTGASG 576
Cdd:NF038329 229 PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPD-GPDGKDGERGPVGPAGKDGQN--GKDGLPGKDGKDG 305
|
250 260
....*....|....*....|....*....
gi 767902478 577 DVGSPgfGLPGLPGRAGVPGLKGEKGNFG 605
Cdd:NF038329 306 QNGKD--GLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
374-717 |
7.03e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 72.25 E-value: 7.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 374 EGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPgppg 453
Cdd:NF038329 116 DGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEK---- 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 454 lpgppgiglpgtpgdpggppgpkgdkgssgipgkegpggkpgkpgvkGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEP 533
Cdd:NF038329 192 -----------------------------------------------GPQGPRGETGPAGEQGPAGPAGPDGEAGPAGED 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 534 GDPVPA-RGDPGIQGIKGEKGEpclscssvvgaqhlvssTGASGDVgspgfglpGLPGRAGVPGLKGEKGNFGEagpags 612
Cdd:NF038329 225 GPAGPAgDGQQGPDGDPGPTGE-----------------DGPQGPD--------GPAGKDGPRGDRGEAGPDGP------ 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 613 pgppgpvgpagiKGAKGEPCEPCPALSNLQDGDvrvVALPGPSGekgepgppgfglpgKQGKAGERGLKGQKGDAGNPGD 692
Cdd:NF038329 274 ------------DGKDGERGPVGPAGKDGQNGK---DGLPGKDG--------------KDGQNGKDGLPGKDGKDGQPGK 324
|
330 340
....*....|....*....|....*
gi 767902478 693 PGTPGTTGRPGLSGEPGVQGPAGPK 717
Cdd:NF038329 325 DGLPGKDGKDGQPGKPAPKTPEVPQ 349
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
672-874 |
3.38e-07 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 54.27 E-value: 3.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 672 QGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKG---EKGDGCTACPSLQGTVTDMAGRPGQPGP-- 746
Cdd:COG5164 51 QGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGgttPAGDGGATGPPDDGGATGPPDDGGSTTPps 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 747 KGEQGPEGVG--RPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQG 824
Cdd:COG5164 131 GGSTTPPGDGgsTPPGPGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVK 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 767902478 825 SPGVKGATGPvgppgasvsgPPGRDGQQGQTGLRGTPGEKGPRGEKGEPG 874
Cdd:COG5164 211 KDDKNGKGNP----------PDDRGGKTGPKDQRPKTNPIERRGPERPEA 250
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
738-1035 |
4.83e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 53.37 E-value: 4.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 738 AGRPGQPGPKGEQGPEG-VGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPG-RGVQGPQGEPGAPGLPGIQGLPGPRGPPG 815
Cdd:NF038329 122 PGPAGPAGPAGEQGPRGdRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGpQGPAGKDGEAGAKGPAGEKGPQGPRGETG 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 816 PTGEKGAQGSPGVKGATGPVGPPGASvsGPPGrDGQQGQTGLRGTPGEKGPRGEKGEPGEcscpsqgdlifsgmpgapgl 895
Cdd:NF038329 202 PAGEQGPAGPAGPDGEAGPAGEDGPA--GPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGK-------------------- 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 896 wmgsswqpgpqgppgipgppgppgvpglqgvPGNNGLPGQPGLtaelgslpieqhllksicgdcvQGQRahpgylvekGE 975
Cdd:NF038329 259 -------------------------------DGPRGDRGEAGP----------------------DGPD---------GK 276
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 976 KGDQGIPGVPGldncaqcflslerpraeeargdnsegdpgcvgspglpgppgLPGQRGEE 1035
Cdd:NF038329 277 DGERGPVGPAG-----------------------------------------KDGQNGKD 295
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
742-803 |
3.43e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 45.18 E-value: 3.43e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767902478 742 GQPGPKGEQGPegvgrpgkPGQPGLPGVQGPPGLKGVQGEPGPPG-RGVQGPQGEPGAPGLPG 803
Cdd:pfam01391 1 GPPGPPGPPGP--------PGPPGPPGPPGPPGPPGPPGEPGPPGpPGPPGPPGPPGAPGAPG 55
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
295-423 |
1.38e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.75 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 295 GRISQKAERGAKVHQETAADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGARGndcvrispdaplqcae 374
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG---------------- 296
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 767902478 375 gPKGEKGESGALGPSGLPGSTGEKGQKGEkgdggiKGVPGKPGRDGRPG 423
Cdd:NF038329 297 -LPGKDGKDGQNGKDGLPGKDGKDGQPGK------DGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
775-1034 |
2.20e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 44.90 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 775 LKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGasvsgPPGRDGQQGQ 854
Cdd:NF038329 107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAG-----PQGPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 855 TGLRGTPGEKGPRGEKGEPGEcscpsqgdlifSGMPGAPGLwmgsswqpgpqgppgipgppgppgvpglqgvPGNNGLPG 934
Cdd:NF038329 182 AGAKGPAGEKGPQGPRGETGP-----------AGEQGPAGP-------------------------------AGPDGEAG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 935 QPGLTAELGSlpieqhllksiCGDCVQGQRAHPGylvEKGEKGDQGIPGVPGLDncaqcflslerpraeeargdnsegdp 1014
Cdd:NF038329 220 PAGEDGPAGP-----------AGDGQQGPDGDPG---PTGEDGPQGPDGPAGKD-------------------------- 259
|
250 260
....*....|....*....|
gi 767902478 1015 gcvgspglpgppglpGQRGE 1034
Cdd:NF038329 260 ---------------GPRGD 264
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
747-936 |
3.34e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 44.64 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 747 KGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGrgvqgPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSP 826
Cdd:COG5164 1 TGLYGPGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAG-----NTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 827 GVKGATGPVGPPGASV-SGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGP 905
Cdd:COG5164 76 QNQGGTTPAQNQGGTRpAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGS 155
|
170 180 190
....*....|....*....|....*....|.
gi 767902478 906 QGPPGIPGPPGPPGVPGLQGVPGNNGLPGQP 936
Cdd:COG5164 156 TTPPGDGGSTTPPGPGGSTTPPDDGGSTTPP 186
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
706-881 |
6.01e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 706 GEPGVQGPAGPKGEKGDGCTACPSlqgtvtdmagRPGQPGPKGeqGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPP 785
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAA----------RPAAPAAPA--APAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 786 GRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKG 865
Cdd:PRK07764 658 AVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
|
170
....*....|....*.
gi 767902478 866 PRGEKGEPGECSCPSQ 881
Cdd:PRK07764 738 PVPLPPEPDDPPDPAG 753
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
378-433 |
1.89e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.47 E-value: 1.89e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 767902478 378 GEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQ 433
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
819-869 |
3.34e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.70 E-value: 3.34e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 767902478 819 EKGAQGSPGVKGATGPVGPPGAS-VSGPPGRDGQQGQTGLRGTPGEKGPRGE 869
Cdd:pfam01391 5 PPGPPGPPGPPGPPGPPGPPGPPgPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
50-231 |
5.08e-59 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 200.66 E-value: 5.08e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 50 GFNLIHRLSLM-KTSAIKKIRNPKGP-LILRLG-AAPVTQPTRRVFPRGLPEEFALVLTLLLKKhthQKTWYLFQVTDAN 126
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 127 GYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVASVHVDCSSASSQPLGPRR--PMRPVG 204
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPGqpPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 767902478 205 HVFLGLDAEQGKPVSFDLQQVHIYCDP 231
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
512-802 |
5.31e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 91.12 E-value: 5.31e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 512 TLPEGFQNFVGlpgkPGPKGEPGdPVPARGDPGIQGIKGEKGEPclscssvvgaqhlvsstgasgdvgspgfGLPGLPGR 591
Cdd:NF038329 105 ELDEGLQQLKG----DGEKGEPG-PAGPAGPAGEQGPRGDRGET----------------------------GPAGPAGP 151
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 592 AGVPGLKGEKGNFGEAGPAGSPGPPGPVGPAGIKGAKGEPCEPCPALSNLQDGDVRVVALPGPSGEKGEPGPPGFGLPGK 671
Cdd:NF038329 152 PGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAG 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 672 QGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDgctacpslqgtvTDMAGRPGQPGPKGEQG 751
Cdd:NF038329 232 DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGP------------VGPAGKDGQNGKDGLPG 299
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 767902478 752 PEgvGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLP 802
Cdd:NF038329 300 KD--GKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTPEVP 348
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
739-875 |
2.09e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 83.03 E-value: 2.09e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 739 GRPGQPGPKGEQGPEG-VGRPGKPGQPGLPGVQGPPGLKGVQGEPGPpgrgvQGPQGEPGAPGLPGIQGLPGPRGPPGPT 817
Cdd:NF038329 117 GEKGEPGPAGPAGPAGeQGPRGDRGETGPAGPAGPPGPQGERGEKGP-----AGPQGEAGPQGPAGKDGEAGAKGPAGEK 191
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767902478 818 GEKGAQGSPGVKGATGPVGPPGASVS---------------------GPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGE 875
Cdd:NF038329 192 GPQGPRGETGPAGEQGPAGPAGPDGEagpagedgpagpagdgqqgpdGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGP 270
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
337-605 |
4.61e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 78.79 E-value: 4.61e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 337 GGKGERGLPGPPGSKGEKGARGNDcvrispdaplqcaeGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKP 416
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDR--------------GETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEA 182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 417 GRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGppglpgppgiglpgtpgdpggppgpkgdkgssgiPGKEGPGGKPGK 496
Cdd:NF038329 183 GAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDG----------------------------------EAGPAGEDGPAG 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 497 PGVKGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEPGDPVPArGDPGIQGIKGEKGEPCLSCSSvvGAQHLVSSTGASG 576
Cdd:NF038329 229 PAGDGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPD-GPDGKDGERGPVGPAGKDGQN--GKDGLPGKDGKDG 305
|
250 260
....*....|....*....|....*....
gi 767902478 577 DVGSPgfGLPGLPGRAGVPGLKGEKGNFG 605
Cdd:NF038329 306 QNGKD--GLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
374-717 |
7.03e-13 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 72.25 E-value: 7.03e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 374 EGPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPgppg 453
Cdd:NF038329 116 DGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEK---- 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 454 lpgppgiglpgtpgdpggppgpkgdkgssgipgkegpggkpgkpgvkGEKGDPCEVCPTLPEGFQNFVGLPGKPGPKGEP 533
Cdd:NF038329 192 -----------------------------------------------GPQGPRGETGPAGEQGPAGPAGPDGEAGPAGED 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 534 GDPVPA-RGDPGIQGIKGEKGEpclscssvvgaqhlvssTGASGDVgspgfglpGLPGRAGVPGLKGEKGNFGEagpags 612
Cdd:NF038329 225 GPAGPAgDGQQGPDGDPGPTGE-----------------DGPQGPD--------GPAGKDGPRGDRGEAGPDGP------ 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 613 pgppgpvgpagiKGAKGEPCEPCPALSNLQDGDvrvVALPGPSGekgepgppgfglpgKQGKAGERGLKGQKGDAGNPGD 692
Cdd:NF038329 274 ------------DGKDGERGPVGPAGKDGQNGK---DGLPGKDG--------------KDGQNGKDGLPGKDGKDGQPGK 324
|
330 340
....*....|....*....|....*
gi 767902478 693 PGTPGTTGRPGLSGEPGVQGPAGPK 717
Cdd:NF038329 325 DGLPGKDGKDGQPGKPAPKTPEVPQ 349
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
672-874 |
3.38e-07 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 54.27 E-value: 3.38e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 672 QGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKG---EKGDGCTACPSLQGTVTDMAGRPGQPGP-- 746
Cdd:COG5164 51 QGSTTPAGNTGGTRPAGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGgttPAGDGGATGPPDDGGATGPPDDGGSTTPps 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 747 KGEQGPEGVG--RPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQG 824
Cdd:COG5164 131 GGSTTPPGDGgsTPPGPGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVK 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 767902478 825 SPGVKGATGPvgppgasvsgPPGRDGQQGQTGLRGTPGEKGPRGEKGEPG 874
Cdd:COG5164 211 KDDKNGKGNP----------PDDRGGKTGPKDQRPKTNPIERRGPERPEA 250
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
738-1035 |
4.83e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 53.37 E-value: 4.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 738 AGRPGQPGPKGEQGPEG-VGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPG-RGVQGPQGEPGAPGLPGIQGLPGPRGPPG 815
Cdd:NF038329 122 PGPAGPAGPAGEQGPRGdRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGpQGPAGKDGEAGAKGPAGEKGPQGPRGETG 201
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 816 PTGEKGAQGSPGVKGATGPVGPPGASvsGPPGrDGQQGQTGLRGTPGEKGPRGEKGEPGEcscpsqgdlifsgmpgapgl 895
Cdd:NF038329 202 PAGEQGPAGPAGPDGEAGPAGEDGPA--GPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGK-------------------- 258
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 896 wmgsswqpgpqgppgipgppgppgvpglqgvPGNNGLPGQPGLtaelgslpieqhllksicgdcvQGQRahpgylvekGE 975
Cdd:NF038329 259 -------------------------------DGPRGDRGEAGP----------------------DGPD---------GK 276
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 976 KGDQGIPGVPGldncaqcflslerpraeeargdnsegdpgcvgspglpgppgLPGQRGEE 1035
Cdd:NF038329 277 DGERGPVGPAG-----------------------------------------KDGQNGKD 295
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
742-803 |
3.43e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 45.18 E-value: 3.43e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767902478 742 GQPGPKGEQGPegvgrpgkPGQPGLPGVQGPPGLKGVQGEPGPPG-RGVQGPQGEPGAPGLPG 803
Cdd:pfam01391 1 GPPGPPGPPGP--------PGPPGPPGPPGPPGPPGPPGEPGPPGpPGPPGPPGPPGAPGAPG 55
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
295-423 |
1.38e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 48.75 E-value: 1.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 295 GRISQKAERGAKVHQETAADECPPCVHGARDSNVTLAPSGPKGGKGERGLPGPPGSKGEKGARGndcvrispdaplqcae 374
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG---------------- 296
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 767902478 375 gPKGEKGESGALGPSGLPGSTGEKGQKGEkgdggiKGVPGKPGRDGRPG 423
Cdd:NF038329 297 -LPGKDGKDGQNGKDGLPGKDGKDGQPGK------DGLPGKDGKDGQPG 338
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
687-874 |
5.88e-05 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 47.31 E-value: 5.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 687 AGNPGDPGTPGTTGRPGLSGEPGVQGPAGPK------GEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVgrPGK 760
Cdd:pfam09606 111 GQQMGGPGTASNLLASLGRPQMPMGGAGFPSqmsrvgRMQPGGQAGGMMQPSSGQPGSGTPNQMGPNGGPGQGQA--GGM 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 761 PGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATG------P 834
Cdd:pfam09606 189 NGGQQGPMGGQMPPQMGVPGMPGPADAGAQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQSQLGMGInqmqqmP 268
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 767902478 835 VGPPGASVSGPPGRDGQQGQTGlrgtPGEKGPRGEKGEPG 874
Cdd:pfam09606 269 QGVGGGAGQGGPGQPMGPPGQQ----PGAMPNVMSIGDQN 304
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
775-1034 |
2.20e-04 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 44.90 E-value: 2.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 775 LKGVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGasvsgPPGRDGQQGQ 854
Cdd:NF038329 107 DEGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAG-----PQGPAGKDGE 181
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 855 TGLRGTPGEKGPRGEKGEPGEcscpsqgdlifSGMPGAPGLwmgsswqpgpqgppgipgppgppgvpglqgvPGNNGLPG 934
Cdd:NF038329 182 AGAKGPAGEKGPQGPRGETGP-----------AGEQGPAGP-------------------------------AGPDGEAG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 935 QPGLTAELGSlpieqhllksiCGDCVQGQRAHPGylvEKGEKGDQGIPGVPGLDncaqcflslerpraeeargdnsegdp 1014
Cdd:NF038329 220 PAGEDGPAGP-----------AGDGQQGPDGDPG---PTGEDGPQGPDGPAGKD-------------------------- 259
|
250 260
....*....|....*....|
gi 767902478 1015 gcvgspglpgppglpGQRGE 1034
Cdd:NF038329 260 ---------------GPRGD 264
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
747-936 |
3.34e-04 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 44.64 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 747 KGEQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGrgvqgPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSP 826
Cdd:COG5164 1 TGLYGPGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAG-----NTGGTRPAQNQGSTTPAGNTGGTRPAGNQGATGPA 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 827 GVKGATGPVGPPGASV-SGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQPGP 905
Cdd:COG5164 76 QNQGGTTPAQNQGGTRpAGNTGGTTPAGDGGATGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGS 155
|
170 180 190
....*....|....*....|....*....|.
gi 767902478 906 QGPPGIPGPPGPPGVPGLQGVPGNNGLPGQP 936
Cdd:COG5164 156 TTPPGDGGSTTPPGPGGSTTPPDDGGSTTPP 186
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
706-881 |
6.01e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 6.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 706 GEPGVQGPAGPKGEKGDGCTACPSlqgtvtdmagRPGQPGPKGeqGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPP 785
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAA----------RPAAPAAPA--APAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHV 657
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 786 GRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGLRGTPGEKG 865
Cdd:PRK07764 658 AVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737
|
170
....*....|....*.
gi 767902478 866 PRGEKGEPGECSCPSQ 881
Cdd:PRK07764 738 PVPLPPEPDDPPDPAG 753
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
644-849 |
1.60e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.67 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 644 GDVRVVALPGP-SGEKGEPGPPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGD 722
Cdd:PRK07764 580 GDWQVEAVVGPaPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAV 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 723 gctacPSLQGTVTDMAGRPGQPGPKG-EQGPEGVGRPGKPGQPGLPGVQGPPGLKGVQGEPGPPGRGVQGPQGEPGAPGL 801
Cdd:PRK07764 660 -----PDASDGGDGWPAKAGGAAPAApPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPA 734
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 767902478 802 PGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRD 849
Cdd:PRK07764 735 ADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEE 782
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
378-433 |
1.89e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.47 E-value: 1.89e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 767902478 378 GEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQ 433
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| PHA03169 |
PHA03169 |
hypothetical protein; Provisional |
698-877 |
2.26e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 223003 [Multi-domain] Cd Length: 413 Bit Score: 41.88 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 698 TTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQPGPKGEQGPEGVGRPGKPGQPGLPGVQGPPGLKG 777
Cdd:PHA03169 77 EESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHN 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 778 vqGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGPPGPTGEKGAQGSPGVKGATGPVGPPGASVSGPPGRDGQQGQTGL 857
Cdd:PHA03169 157 --PSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHE 234
|
170 180
....*....|....*....|
gi 767902478 858 RGTPGEKGPRGEKGEPGECS 877
Cdd:PHA03169 235 DEPTEPEREGPPFPGHRSHS 254
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
819-869 |
3.34e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.70 E-value: 3.34e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 767902478 819 EKGAQGSPGVKGATGPVGPPGAS-VSGPPGRDGQQGQTGLRGTPGEKGPRGE 869
Cdd:pfam01391 5 PPGPPGPPGPPGPPGPPGPPGPPgPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
375-424 |
3.58e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 36.70 E-value: 3.58e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 767902478 375 GPKGEKGESGALGPSGLPGSTGEKGQKGEKGDGGIKGVPGKPGRDGRPGE 424
Cdd:pfam01391 4 GPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGA 53
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
334-403 |
7.87e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 35.55 E-value: 7.87e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 334 GPKGGKGERGLPGPPGSKGEKGARGNDcvrispdaplqcaeGPKGEKGESGALGPSGLPGSTGEKGQKGE 403
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPP--------------GPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
687-875 |
9.35e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 39.97 E-value: 9.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 687 AGNPGDPGTPGTTGRPGLSGEP-GVQGPAGPKGEKGDGCTACPSLQGTvtdmAGRPGQPGPKGEQGPEGVGRPGKPGQPG 765
Cdd:PRK07764 594 AAGGEGPPAPASSGPPEEAARPaAPAAPAAPAAPAPAGAAAAPAEASA----APAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767902478 766 LPGVQGPPGLK---GVQGEPGPPGRGVQGPQGEPGAPGLPGIQGLPGPRGP--PGPTGEKGAQGSPGVKGATGPVGPPGA 840
Cdd:PRK07764 670 PAKAGGAAPAApppAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQppQAAQGASAPSPAADDPVPLPPEPDDPP 749
|
170 180 190
....*....|....*....|....*....|....*
gi 767902478 841 SVSGPPGRDGQQGQTGLRGTPGEKGPRGEKGEPGE 875
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEE 784
|
|
| |
