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Conserved domains on  [gi|767982138|ref|XP_011535722|]
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golgin subfamily A member 5 isoform X2 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
420-683 5.00e-118

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


:

Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 355.60  E-value: 5.00e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  420 NLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDM 499
Cdd:pfam09787   1 NLESAKQELADYKQKAARILQSKEKLIASLKEGSGVEGLDSSTALTLELEELRQERDLLREEIQKLRGQIQQLRTELQEL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  500 EAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTL 579
Cdd:pfam09787  81 EAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQLTSKSQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  580 SNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGIDNGEGTRLRNVPVLF 659
Cdd:pfam09787 161 SSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTSINMEGISDGEGTRLRNVPGLF 240
                         250       260
                  ....*....|....*....|....
gi 767982138  660 NDTETNLAGMYGKVRKAASSIDQF 683
Cdd:pfam09787 241 SESDSDRAGMYGKVRKAASVIDKF 264
Smc super family cl34174
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
227-542 8.81e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


The actual alignment was detected with superfamily member COG1196:

Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 74.97  E-value: 8.81e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 227 LRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKV 306
Cdd:COG1196  216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 307 RLQEADQLLSTRTEALEALQSEKSRIMQDQSEgnslQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMER 386
Cdd:COG1196  296 ELARLEQDIARLEERRRELEERLEELEEELAE----LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 387 QNLAEAITLAERKYSDEKkrvdELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKegsgfegldsstassm 466
Cdd:COG1196  372 AELAEAEEELEELAEELL----EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA---------------- 431
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767982138 467 ELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAgQKASKQELETELERLKQEF 542
Cdd:COG1196  432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAEADYEGF 506
 
Name Accession Description Interval E-value
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
420-683 5.00e-118

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 355.60  E-value: 5.00e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  420 NLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDM 499
Cdd:pfam09787   1 NLESAKQELADYKQKAARILQSKEKLIASLKEGSGVEGLDSSTALTLELEELRQERDLLREEIQKLRGQIQQLRTELQEL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  500 EAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTL 579
Cdd:pfam09787  81 EAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQLTSKSQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  580 SNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGIDNGEGTRLRNVPVLF 659
Cdd:pfam09787 161 SSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTSINMEGISDGEGTRLRNVPGLF 240
                         250       260
                  ....*....|....*....|....
gi 767982138  660 NDTETNLAGMYGKVRKAASSIDQF 683
Cdd:pfam09787 241 SESDSDRAGMYGKVRKAASVIDKF 264
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
227-542 8.81e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 74.97  E-value: 8.81e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 227 LRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKV 306
Cdd:COG1196  216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 307 RLQEADQLLSTRTEALEALQSEKSRIMQDQSEgnslQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMER 386
Cdd:COG1196  296 ELARLEQDIARLEERRRELEERLEELEEELAE----LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 387 QNLAEAITLAERKYSDEKkrvdELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKegsgfegldsstassm 466
Cdd:COG1196  372 AELAEAEEELEELAEELL----EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA---------------- 431
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767982138 467 ELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAgQKASKQELETELERLKQEF 542
Cdd:COG1196  432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAEADYEGF 506
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
219-570 1.03e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.09  E-value: 1.03e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   219 GKSHELSNLRLENqllRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNAdhsksdrMTRGLRAQVDDLTEAVAAKD 298
Cdd:TIGR02168  663 GGSAKTNSSILER---RREIEELEEKIEELEEKIAELEKALAELRKELEELEE-------ELEQLRKELEELSRQISALR 732
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   299 SQLAVLKVRLQEADQLLSTRTEALEALQSEKsRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAAR 378
Cdd:TIGR02168  733 KDLARLEAEVEQLEERIAQLSKELTELEAEI-EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   379 LNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRI---LQSKEKLINSLKEGSGF 455
Cdd:TIGR02168  812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELeseLEALLNERASLEEALAL 891
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   456 EGLDSSTASSmELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQD------------------L 517
Cdd:TIGR02168  892 LRSELEELSE-ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtleeaealenkieddeeeA 970
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767982138   518 HDQIAGQKASKQEL-------ETELERLKQEFHYIE---EDLYRTKNTLQSRIKDRDEEIQKL 570
Cdd:TIGR02168  971 RRRLKRLENKIKELgpvnlaaIEEYEELKERYDFLTaqkEDLTEAKETLEEAIEEIDREARER 1033
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
250-624 6.29e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 69.32  E-value: 6.29e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   250 QRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVD------DLTEAVaaKDSQLAVLKVRLQEADQLLSTRTEALE 323
Cdd:TIGR02168  172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEkaerykELKAEL--RELELALLVLRLEELREELEELQEELK 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   324 ALQSEKSRImqdqsegnSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMErqnlaeaitlaERKYSDE 403
Cdd:TIGR02168  250 EAEEELEEL--------TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ-----------KQILRER 310
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   404 KKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEgsgfegldsstassmELEELRHEKEMQREEIQ 483
Cdd:TIGR02168  311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA---------------ELEELEAELEELESRLE 375
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   484 KLMGQIHQLRSELQDMEAQQV---NEAESAREQLQDLHDQIAGQKASKQELETELERlkQEFHYIEEDLYRTKNTLQSRI 560
Cdd:TIGR02168  376 ELEEQLETLRSKVAQLELQIAslnNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQ 453
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767982138   561 KDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQ 624
Cdd:TIGR02168  454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
219-625 2.56e-11

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 66.71  E-value: 2.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 219 GKSHELSNLRL-ENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMtrglrAQVDDLTEAVAAK 297
Cdd:COG4717   63 GRKPELNLKELkELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-----LQLLPLYQELEAL 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 298 DSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAA 377
Cdd:COG4717  138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEE 217
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 378 RLNKVEMERQNLAEAITLAERKysDEKKRVDELQQQVKLYK--LNLESSKQELIDYKQKATRILQskekLINSLKEGSGF 455
Cdd:COG4717  218 AQEELEELEEELEQLENELEAA--ALEERLKEARLLLLIAAalLALLGLGGSLLSLILTIAGVLF----LVLGLLALLFL 291
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 456 EGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSElQDMEAQQVNEAESAREQLQDLHDQIAG--QKASKQELET 533
Cdd:COG4717  292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP-PDLSPEELLELLDRIEELQELLREAEEleEELQLEELEQ 370
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 534 ELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKT------LSNSSQSELENRLHQLTETLIQKQTMLES 607
Cdd:COG4717  371 EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLgeleelLEALDEEELEEELEELEEELEELEEELEE 450
                        410
                 ....*....|....*...
gi 767982138 608 LSTEKNSLVFQLERLEQQ 625
Cdd:COG4717  451 LREELAELEAELEQLEED 468
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
224-625 3.95e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 56.61  E-value: 3.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 224 LSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMtRGLRAQVDDLT---------EAV 294
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL-ERLKKRLTGLTpeklekeleELE 397
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 295 AAKDS---QLAVLKVRLQEADQLLSTRTEALEALQSEKS------RIMQDQSEGNSLqnqalqtfqERLHEADATLKREQ 365
Cdd:PRK03918 398 KAKEEieeEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcgRELTEEHRKELL---------EEYTAELKRIEKEL 468
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 366 ESYKQMQSEFAARLNKVEMERQNLAEAITLaeRKYSDEKKRVDElqqqvKLYKLNLESSKQELIDYKQKATRILQSKEKL 445
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESELIKL--KELAEQLKELEE-----KLKKYNLEELEKKAEEYEKLKEKLIKLKGEI 541
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 446 INSLKEGSGFEGLDSSTAssmELEELRHEKEMQREEIQKlmgqihqlrsELQDMEAQQVNEAESAREQLQDLHDQIAGQK 525
Cdd:PRK03918 542 KSLKKELEKLEELKKKLA---ELEKKLDELEEELAELLK----------ELEELGFESVEELEERLKELEPFYNEYLELK 608
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 526 ASKQELETELERLK---QEFHYIEEDLYRTKNTLQsRIKDRDEEIQKLRNQLTNKtlsnssqsELENRLHQLTETLIQKQ 602
Cdd:PRK03918 609 DAEKELEREEKELKkleEELDKAFEELAETEKRLE-ELRKELEELEKKYSEEEYE--------ELREEYLELSRELAGLR 679
                        410       420
                 ....*....|....*....|...
gi 767982138 603 TMLESLSTEKNSLVFQLERLEQQ 625
Cdd:PRK03918 680 AELEELEKRREEIKKTLEKLKEE 702
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
220-608 1.69e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 54.68  E-value: 1.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 220 KSHELSNLRLENQLLRNEVQSLNQEmaslLQRSKETQEELNKARARVEKWNADhsksdrmTRGLRAQVDDLTEAVAAKDS 299
Cdd:PRK03918 205 VLREINEISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGS-------KRKLEEKIRELEERIEELKK 273
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 300 QLAVLKVRLQEADQL--LSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADAT------LKREQESYKQM 371
Cdd:PRK03918 274 EIEELEEKVKELKELkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerleeLKKKLKELEKR 353
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 372 QSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKE 451
Cdd:PRK03918 354 LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 452 GSGFEGLDSSTASSMELEEL--RHEKEMQR--EEIQKLMGQIHQLRSELQDMEAQQVNEAESAReqLQDLHDQI--AGQK 525
Cdd:PRK03918 434 AKGKCPVCGRELTEEHRKELleEYTAELKRieKELKEIEEKERKLRKELRELEKVLKKESELIK--LKELAEQLkeLEEK 511
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 526 ASKQELEtELERLKQEFHYIEEDLYRTKNTLqSRIKDRDEEIQKLRNQLTnktlsnssqsELENRLHQLTETLIQKQTML 605
Cdd:PRK03918 512 LKKYNLE-ELEKKAEEYEKLKEKLIKLKGEI-KSLKKELEKLEELKKKLA----------ELEKKLDELEEELAELLKEL 579

                 ...
gi 767982138 606 ESL 608
Cdd:PRK03918 580 EEL 582
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
223-574 2.16e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 54.35  E-value: 2.16e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEK-WNADHSKSDRMTRgLRAQVDDLTEAVaakdsql 301
Cdd:pfam15921  357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlWDRDTGNSITIDH-LRRELDDRNMEV------- 428
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   302 avlkvrlqeadqllsTRTEAL-EALQSEKSRIMQDQSEGNSLQNQALqtfqERLHEADATLKREQESYKQMQSEFAAR-- 378
Cdd:pfam15921  429 ---------------QRLEALlKAMKSECQGQMERQMAAIQGKNESL----EKVSSLTAQLESTKEMLRKVVEELTAKkm 489
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   379 -LNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRI------LQSKEKLINSLKE 451
Cdd:pfam15921  490 tLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECealklqMAEKDKVIEILRQ 569
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   452 G----SGFEGLDSSTASSMELEELRHEKEM--QREEIQKLM-------GQIHQLRSELQDMEAQQVNEAESAREQLQDL- 517
Cdd:pfam15921  570 QienmTQLVGQHGRTAGAMQVEKAQLEKEIndRRLELQEFKilkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVk 649
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767982138   518 -----HDQIAGQ-KASKQELET---ELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQL 574
Cdd:pfam15921  650 dikqeRDQLLNEvKTSRNELNSlseDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTL 715
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
439-622 1.75e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 41.16  E-value: 1.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   439 LQSKE-------KLINSLKEG--SGFEGLDSSTASSM-ELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAE 508
Cdd:smart00787 128 LEAKKmwyewrmKLLEGLKEGldENLEGLKEDYKLLMkELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELD 207
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   509 SAREQLQDLHDQIAGQKASKQELETELERLKQEfhyIEEdlyrtKNTLQSRIKDRDEEIQKLRNQltNKTLSNSSQSELE 588
Cdd:smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESK---IED-----LTNKKSELNTEIAEAEKKLEQ--CRGFTFKEIEKLK 277
                          170       180       190
                   ....*....|....*....|....*....|....
gi 767982138   589 NRLHQLtetliQKQTMLESLSTEKNSLVFQLERL 622
Cdd:smart00787 278 EQLKLL-----QSLTGWKITKLSGNTLSMTYDRE 306
 
Name Accession Description Interval E-value
Golgin_A5 pfam09787
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ...
420-683 5.00e-118

Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.


Pssm-ID: 462900 [Multi-domain]  Cd Length: 305  Bit Score: 355.60  E-value: 5.00e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  420 NLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDM 499
Cdd:pfam09787   1 NLESAKQELADYKQKAARILQSKEKLIASLKEGSGVEGLDSSTALTLELEELRQERDLLREEIQKLRGQIQQLRTELQEL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  500 EAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTL 579
Cdd:pfam09787  81 EAQQQEEAESSREQLQELEEQLATERSARREAEAELERLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQLTSKSQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  580 SNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGIDNGEGTRLRNVPVLF 659
Cdd:pfam09787 161 SSSSQSELENRLHQLTETLIQKQTMLEALSTEKNSLVLQLERMEQQIKELQGEGSNGTSINMEGISDGEGTRLRNVPGLF 240
                         250       260
                  ....*....|....*....|....
gi 767982138  660 NDTETNLAGMYGKVRKAASSIDQF 683
Cdd:pfam09787 241 SESDSDRAGMYGKVRKAASVIDKF 264
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
227-542 8.81e-14

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 74.97  E-value: 8.81e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 227 LRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKV 306
Cdd:COG1196  216 RELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 307 RLQEADQLLSTRTEALEALQSEKSRIMQDQSEgnslQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMER 386
Cdd:COG1196  296 ELARLEQDIARLEERRRELEERLEELEEELAE----LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 387 QNLAEAITLAERKYSDEKkrvdELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKegsgfegldsstassm 466
Cdd:COG1196  372 AELAEAEEELEELAEELL----EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA---------------- 431
                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767982138 467 ELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAgQKASKQELETELERLKQEF 542
Cdd:COG1196  432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA-EAAARLLLLLEAEADYEGF 506
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
219-570 1.03e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.09  E-value: 1.03e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   219 GKSHELSNLRLENqllRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNAdhsksdrMTRGLRAQVDDLTEAVAAKD 298
Cdd:TIGR02168  663 GGSAKTNSSILER---RREIEELEEKIEELEEKIAELEKALAELRKELEELEE-------ELEQLRKELEELSRQISALR 732
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   299 SQLAVLKVRLQEADQLLSTRTEALEALQSEKsRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAAR 378
Cdd:TIGR02168  733 KDLARLEAEVEQLEERIAQLSKELTELEAEI-EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   379 LNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRI---LQSKEKLINSLKEGSGF 455
Cdd:TIGR02168  812 LTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELeseLEALLNERASLEEALAL 891
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   456 EGLDSSTASSmELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQD------------------L 517
Cdd:TIGR02168  892 LRSELEELSE-ELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLtleeaealenkieddeeeA 970
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767982138   518 HDQIAGQKASKQEL-------ETELERLKQEFHYIE---EDLYRTKNTLQSRIKDRDEEIQKL 570
Cdd:TIGR02168  971 RRRLKRLENKIKELgpvnlaaIEEYEELKERYDFLTaqkEDLTEAKETLEEAIEEIDREARER 1033
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
216-540 1.09e-13

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 75.09  E-value: 1.09e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   216 NDDGKSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVA 295
Cdd:TIGR02168  219 KAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS 298
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   296 AKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKsrimqdqsegnslqnqalqtfqERLHEADATLKREQESYKQMQSEF 375
Cdd:TIGR02168  299 RLEQQKQILRERLANLERQLEELEAQLEELESKL----------------------DELAEELAELEEKLEELKEELESL 356
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   376 AARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGF 455
Cdd:TIGR02168  357 EAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELK 436
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   456 EGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQ------QVNEAESAREQLQDLHDQIAGQKASKQ 529
Cdd:TIGR02168  437 ELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERElaqlqaRLDSLERLQENLEGFSEGVKALLKNQS 516
                          330
                   ....*....|.
gi 767982138   530 ELETELERLKQ 540
Cdd:TIGR02168  517 GLSGILGVLSE 527
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
250-624 6.29e-12

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 69.32  E-value: 6.29e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   250 QRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVD------DLTEAVaaKDSQLAVLKVRLQEADQLLSTRTEALE 323
Cdd:TIGR02168  172 ERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEkaerykELKAEL--RELELALLVLRLEELREELEELQEELK 249
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   324 ALQSEKSRImqdqsegnSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMErqnlaeaitlaERKYSDE 403
Cdd:TIGR02168  250 EAEEELEEL--------TAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ-----------KQILRER 310
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   404 KKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEgsgfegldsstassmELEELRHEKEMQREEIQ 483
Cdd:TIGR02168  311 LANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA---------------ELEELEAELEELESRLE 375
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   484 KLMGQIHQLRSELQDMEAQQV---NEAESAREQLQDLHDQIAGQKASKQELETELERlkQEFHYIEEDLYRTKNTLQSRI 560
Cdd:TIGR02168  376 ELEEQLETLRSKVAQLELQIAslnNEIERLEARLERLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQ 453
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767982138   561 KDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQ 624
Cdd:TIGR02168  454 EELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
284-625 1.24e-11

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 68.16  E-value: 1.24e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   284 RAQVDDLTEAVAAKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSlQNQALQTFQERLHEADATLKR 363
Cdd:TIGR02168  676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK-DLARLEAEVEQLEERIAQLSK 754
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   364 EQESYKQMQSEFAARLNKvemERQNLAEAitlaerkysdeKKRVDELQQQVKLYKLNLESSKQELidykqkatrilqske 443
Cdd:TIGR02168  755 ELTELEAEIEELEERLEE---AEEELAEA-----------EAEIEELEAQIEQLKEELKALREAL--------------- 805
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   444 klinslkegsgfegldssTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQqvneAESAREQLQDLHDQIAG 523
Cdd:TIGR02168  806 ------------------DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ----IEELSEDIESLAAEIEE 863
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   524 QKASKQELETELERLKQEFHYIEEDLYRTKN---TLQSRIKDRDEEIQKLRNQLTNKTLSNSS----QSELENRLHQLTE 596
Cdd:TIGR02168  864 LEELIEELESELEALLNERASLEEALALLRSeleELSEELRELESKRSELRRELEELREKLAQlelrLEGLEVRIDNLQE 943
                          330       340       350
                   ....*....|....*....|....*....|
gi 767982138   597 TLIQK-QTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:TIGR02168  944 RLSEEySLTLEEAEALENKIEDDEEEARRR 973
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
234-588 1.57e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 67.79  E-value: 1.57e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   234 LRNEVQSLNQEMASLLqRSKETQEELNKARA--RVEKWNAdhskSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKVRLQEA 311
Cdd:TIGR02169  196 KRQQLERLRREREKAE-RYQALLKEKREYEGyeLLKEKEA----LERQKEAIERQLASLEEELEKLTEEISELEKRLEEI 270
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   312 DQLLSTRTEALEALQSEKSRimqdqsegnslqnqALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAE 391
Cdd:TIGR02169  271 EQLLEELNKKIKDLGEEEQL--------------RVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLA 336
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   392 AITLAERKYSDEKKRVDELQQQVKlyklnleSSKQELIDYKQKatriLQSKEKLINSLKEgsgfegldsstassmELEEL 471
Cdd:TIGR02169  337 EIEELEREIEEERKRRDKLTEEYA-------ELKEELEDLRAE----LEEVDKEFAETRD---------------ELKDY 390
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   472 RHEKEMQREEIQKLMGQIHQLRSELQdmeaqqvneaeSAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYR 551
Cdd:TIGR02169  391 REKLEKLKREINELKRELDRLQEELQ-----------RLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
                          330       340       350       360
                   ....*....|....*....|....*....|....*....|
gi 767982138   552 TK---NTLQSRIKDRDEEIQKLRNQLTnktlsnSSQSELE 588
Cdd:TIGR02169  460 LAadlSKYEQELYDLKEEYDRVEKELS------KLQRELA 493
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
219-625 2.56e-11

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 66.71  E-value: 2.56e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 219 GKSHELSNLRL-ENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMtrglrAQVDDLTEAVAAK 297
Cdd:COG4717   63 GRKPELNLKELkELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-----LQLLPLYQELEAL 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 298 DSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAA 377
Cdd:COG4717  138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEE 217
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 378 RLNKVEMERQNLAEAITLAERKysDEKKRVDELQQQVKLYK--LNLESSKQELIDYKQKATRILQskekLINSLKEGSGF 455
Cdd:COG4717  218 AQEELEELEEELEQLENELEAA--ALEERLKEARLLLLIAAalLALLGLGGSLLSLILTIAGVLF----LVLGLLALLFL 291
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 456 EGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSElQDMEAQQVNEAESAREQLQDLHDQIAG--QKASKQELET 533
Cdd:COG4717  292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP-PDLSPEELLELLDRIEELQELLREAEEleEELQLEELEQ 370
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 534 ELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKT------LSNSSQSELENRLHQLTETLIQKQTMLES 607
Cdd:COG4717  371 EIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLgeleelLEALDEEELEEELEELEEELEELEEELEE 450
                        410
                 ....*....|....*...
gi 767982138 608 LSTEKNSLVFQLERLEQQ 625
Cdd:COG4717  451 LREELAELEAELEQLEED 468
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
306-616 3.62e-11

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 66.63  E-value: 3.62e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   306 VRLQEADQLLSTRtEALEALQSEKSRIMQDQSEGNSLQNQALQTFQErLHEADATLKREQESYKQMQSEFAARLNKVEME 385
Cdd:TIGR02169  668 FSRSEPAELQRLR-ERLEGLKRELSSLQSELRRIENRLDELSQELSD-ASRKIGEIEKEIEQLEQEEEKLKERLEELEED 745
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   386 RQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDykqkatrilqskeklinslkegsgfEGLDSSTASS 465
Cdd:TIGR02169  746 LSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH-------------------------SRIPEIQAEL 800
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   466 MELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYI 545
Cdd:TIGR02169  801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767982138   546 EEDLYRTKntlqsriKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLV 616
Cdd:TIGR02169  881 ESRLGDLK-------KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
348-624 1.03e-10

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 65.34  E-value: 1.03e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 348 QTFQERLHEADATLK-REQESYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQ 426
Cdd:COG1196  216 RELKEELKELEAELLlLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 427 ELIDYKQKATRILQSKEKLINSLKEgsgfegldsstaSSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNE 506
Cdd:COG1196  296 ELARLEQDIARLEERRRELEERLEE------------LEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEA 363
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 507 AESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSE 586
Cdd:COG1196  364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
                        250       260       270
                 ....*....|....*....|....*....|....*...
gi 767982138 587 LENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQ 624
Cdd:COG1196  444 LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAE 481
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
347-625 3.32e-10

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 63.54  E-value: 3.32e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   347 LQTFQERLHEADATLKREQESYKQMQSEFA---ARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLES 423
Cdd:TIGR02168  234 LEELREELEELQEELKEAEEELEELTAELQeleEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   424 SKQELidyKQKATRILQSKEKLINSLKEgsgfegldsSTASSMELEELRHEKEMQREEIQKLmgqihqlRSELQDMEAQq 503
Cdd:TIGR02168  314 LERQL---EELEAQLEELESKLDELAEE---------LAELEEKLEELKEELESLEAELEEL-------EAELEELESR- 373
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   504 vneAESAREQLQDLHDQIAGQKASKQELETELERLKQEfhyieedlyrtKNTLQSRIKDRDEEIQKLRNQLTnktlsnss 583
Cdd:TIGR02168  374 ---LEELEEQLETLRSKVAQLELQIASLNNEIERLEAR-----------LERLEDRRERLQQEIEELLKKLE-------- 431
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|..
gi 767982138   584 qselENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:TIGR02168  432 ----EAELKELQAELEELEEELEELQEELERLEEALEELREE 469
MukB COG3096
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...
248-625 5.16e-10

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442330 [Multi-domain]  Cd Length: 1470  Bit Score: 63.05  E-value: 5.16e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  248 LLQRSKETQEELNKARarvEKWNADHSKSDRMTRGLRAQVD---DLTEAVAAKDSQLAVLK--VRLQEAdqlLSTRTEAL 322
Cdd:COG3096   283 LSERALELRRELFGAR---RQLAEEQYRLVEMARELEELSAresDLEQDYQAASDHLNLVQtaLRQQEK---IERYQEDL 356
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  323 EALqSEKSRImqdqsegnslQNQALQTFQERLHEADATLKREQESYKQMQSEFAARlnkvemeRQNLAEAITLAeRKYSD 402
Cdd:COG3096   357 EEL-TERLEE----------QEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADY-------QQALDVQQTRA-IQYQQ 417
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  403 EKKRVDELQQQVKLYKLNLESSKQELIDYKQKA----TRILQSKEKLINSLKEGSGFE-----------GLDSSTASSME 467
Cdd:COG3096   418 AVQALEKARALCGLPDLTPENAEDYLAAFRAKEqqatEEVLELEQKLSVADAARRQFEkayelvckiagEVERSQAWQTA 497
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  468 LEELRhekemQREEIQKLMGQIHQLRSELQDMEaQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEE 547
Cdd:COG3096   498 RELLR-----RYRSQQALAQRLQQLRAQLAELE-QRLRQQQNAERLLEEFCQRIGQQLDAAEELEELLAELEAQLEELEE 571
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  548 DLyRTKNTLQSRIKDRDEEIQKLRNQLTNK------------TLSNSSQSELENRlHQLTETLiqkQTMLE---SLSTEK 612
Cdd:COG3096   572 QA-AEAVEQRSELRQQLEQLRARIKELAARapawlaaqdaleRLREQSGEALADS-QEVTAAM---QQLLErerEATVER 646
                         410
                  ....*....|...
gi 767982138  613 NSLVFQLERLEQQ 625
Cdd:COG3096   647 DELAARKQALESQ 659
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
223-625 1.65e-09

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 61.47  E-value: 1.65e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  223 ELSNLRLENQLLRNEVQSLNQ--EMASLLQRSKETQEELNKARARVEKWNADHSKS--DRMTRGLRAQVDDLTEAVAAKD 298
Cdd:COG4913   236 DLERAHEALEDAREQIELLEPirELAERYAAARERLAELEYLRAALRLWFAQRRLEllEAELEELRAELARLEAELERLE 315
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  299 SQLAVLKVRLQEA-DQLLSTRTEALEALQSEKSRIMQDQSEgnslQNQALQTFQERLHEADATLKREQESYKQMQSEFAA 377
Cdd:COG4913   316 ARLDALREELDELeAQIRGNGGDRLEQLEREIERLERELEE----RERRRARLEALLAALGLPLPASAEEFAALRAEAAA 391
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  378 RLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKlyklNLESSKQ----------------------------ELI 429
Cdd:COG4913   392 LLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA----SLERRKSniparllalrdalaealgldeaelpfvgELI 467
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  430 DYKQK---------------ATRILQSKEKL------INSLKEGSG--FEGLDSSTAS---------------------- 464
Cdd:COG4913   468 EVRPEeerwrgaiervlggfALTLLVPPEHYaaalrwVNRLHLRGRlvYERVRTGLPDperprldpdslagkldfkphpf 547
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  465 ----SMEL------------EEL-RHEKEMQREeiqklmGQIHQLRS--ELQDmeAQQVNEA----ESAREQLQDLHDQI 521
Cdd:COG4913   548 rawlEAELgrrfdyvcvdspEELrRHPRAITRA------GQVKGNGTrhEKDD--RRRIRSRyvlgFDNRAKLAALEAEL 619
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  522 AGQKASKQELETELERLKQEFHYIEE--DLYRTKNTLQSRIKD---RDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTE 596
Cdd:COG4913   620 AELEEELAEAEERLEALEAELDALQErrEALQRLAEYSWDEIDvasAEREIAELEAELERLDASSDDLAALEEQLEELEA 699
                         490       500
                  ....*....|....*....|....*....
gi 767982138  597 TLIQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:COG4913   700 ELEELEEELDELKGEIGRLEKELEQAEEE 728
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
223-625 9.94e-09

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 58.91  E-value: 9.94e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEkwNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLA 302
Cdd:TIGR02168  387 KVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE--EAELKELQAELEELEEELEELQEELERLEEALE 464
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   303 VLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEAD-----ATLKREQESYKQ-MQSEFA 376
Cdd:TIGR02168  465 ELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGilgvlSELISVDEGYEAaIEAALG 544
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   377 ARLNKVEMERQNLAEAIT-------------LAERKYSDEKKRVDELQQ-----QVKLYKLNLESSKQEL---IDYKQKA 435
Cdd:TIGR02168  545 GRLQAVVVENLNAAKKAIaflkqnelgrvtfLPLDSIKGTEIQGNDREIlknieGFLGVAKDLVKFDPKLrkaLSYLLGG 624
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   436 TRI---LQSKEKLINSLKEGSGFEGLD--------------SSTASSM-----ELEELRHEKEMQREEIQKLMGQIHQLR 493
Cdd:TIGR02168  625 VLVvddLDNALELAKKLRPGYRIVTLDgdlvrpggvitggsAKTNSSIlerrrEIEELEEKIEELEEKIAELEKALAELR 704
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   494 SELQDMEaqqvNEAESAREQLQDLHDQIAGQKASKQELETELERLKQ----------EFHYIEEDLYRTKNTLQSRIKDR 563
Cdd:TIGR02168  705 KELEELE----EELEQLRKELEELSRQISALRKDLARLEAEVEQLEEriaqlskeltELEAEIEELEERLEEAEEELAEA 780
                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767982138   564 DEEIQKLRNQLTN----KTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:TIGR02168  781 EAEIEELEAQIEQlkeeLKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQ 846
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
224-625 3.95e-08

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 56.61  E-value: 3.95e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 224 LSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMtRGLRAQVDDLT---------EAV 294
Cdd:PRK03918 319 LEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL-ERLKKRLTGLTpeklekeleELE 397
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 295 AAKDS---QLAVLKVRLQEADQLLSTRTEALEALQSEKS------RIMQDQSEGNSLqnqalqtfqERLHEADATLKREQ 365
Cdd:PRK03918 398 KAKEEieeEISKITARIGELKKEIKELKKAIEELKKAKGkcpvcgRELTEEHRKELL---------EEYTAELKRIEKEL 468
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 366 ESYKQMQSEFAARLNKVEMERQNLAEAITLaeRKYSDEKKRVDElqqqvKLYKLNLESSKQELIDYKQKATRILQSKEKL 445
Cdd:PRK03918 469 KEIEEKERKLRKELRELEKVLKKESELIKL--KELAEQLKELEE-----KLKKYNLEELEKKAEEYEKLKEKLIKLKGEI 541
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 446 INSLKEGSGFEGLDSSTAssmELEELRHEKEMQREEIQKlmgqihqlrsELQDMEAQQVNEAESAREQLQDLHDQIAGQK 525
Cdd:PRK03918 542 KSLKKELEKLEELKKKLA---ELEKKLDELEEELAELLK----------ELEELGFESVEELEERLKELEPFYNEYLELK 608
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 526 ASKQELETELERLK---QEFHYIEEDLYRTKNTLQsRIKDRDEEIQKLRNQLTNKtlsnssqsELENRLHQLTETLIQKQ 602
Cdd:PRK03918 609 DAEKELEREEKELKkleEELDKAFEELAETEKRLE-ELRKELEELEKKYSEEEYE--------ELREEYLELSRELAGLR 679
                        410       420
                 ....*....|....*....|...
gi 767982138 603 TMLESLSTEKNSLVFQLERLEQQ 625
Cdd:PRK03918 680 AELEELEKRREEIKKTLEKLKEE 702
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
232-500 1.66e-07

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 54.92  E-value: 1.66e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  232 QLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWN--ADHSKSDRMTRGLRAQVDDLTEAVA---AKDSQLAVLKV 306
Cdd:COG4913   613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELErldASSDDLAALEE 692
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  307 RLQEADQLLSTRTEALEALQSEKSRImqdqsegnslqNQALQTFQERLHEADATLKR-EQESYKQMQSEFAARLNKVEME 385
Cdd:COG4913   693 QLEELEAELEELEEELDELKGEIGRL-----------EKELEQAEEELDELQDRLEAaEDLARLELRALLEERFAAALGD 761
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  386 ------RQNLAEAITLAERKYSDEKKRVDELQQQVK----LYKLNLESSKQELIDYKQKATRILQS-----KEKLINSLK 450
Cdd:COG4913   762 averelRENLEERIDALRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLDRLEEDglpeyEERFKELLN 841
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 767982138  451 EgsgfegldsstASSMELEELRHEKEMQREEIQKlmgQIHQLRSELQDME 500
Cdd:COG4913   842 E-----------NSIEFVADLLSKLRRAIREIKE---RIDPLNDSLKRIP 877
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
220-608 1.69e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 54.68  E-value: 1.69e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 220 KSHELSNLRLENQLLRNEVQSLNQEmaslLQRSKETQEELNKARARVEKWNADhsksdrmTRGLRAQVDDLTEAVAAKDS 299
Cdd:PRK03918 205 VLREINEISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGS-------KRKLEEKIRELEERIEELKK 273
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 300 QLAVLKVRLQEADQL--LSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADAT------LKREQESYKQM 371
Cdd:PRK03918 274 EIEELEEKVKELKELkeKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKeerleeLKKKLKELEKR 353
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 372 QSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKE 451
Cdd:PRK03918 354 LEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 452 GSGFEGLDSSTASSMELEEL--RHEKEMQR--EEIQKLMGQIHQLRSELQDMEAQQVNEAESAReqLQDLHDQI--AGQK 525
Cdd:PRK03918 434 AKGKCPVCGRELTEEHRKELleEYTAELKRieKELKEIEEKERKLRKELRELEKVLKKESELIK--LKELAEQLkeLEEK 511
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 526 ASKQELEtELERLKQEFHYIEEDLYRTKNTLqSRIKDRDEEIQKLRNQLTnktlsnssqsELENRLHQLTETLIQKQTML 605
Cdd:PRK03918 512 LKKYNLE-ELEKKAEEYEKLKEKLIKLKGEI-KSLKKELEKLEELKKKLA----------ELEKKLDELEEELAELLKEL 579

                 ...
gi 767982138 606 ESL 608
Cdd:PRK03918 580 EEL 582
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
223-574 2.16e-07

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 54.35  E-value: 2.16e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEK-WNADHSKSDRMTRgLRAQVDDLTEAVaakdsql 301
Cdd:pfam15921  357 ELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlWDRDTGNSITIDH-LRRELDDRNMEV------- 428
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   302 avlkvrlqeadqllsTRTEAL-EALQSEKSRIMQDQSEGNSLQNQALqtfqERLHEADATLKREQESYKQMQSEFAAR-- 378
Cdd:pfam15921  429 ---------------QRLEALlKAMKSECQGQMERQMAAIQGKNESL----EKVSSLTAQLESTKEMLRKVVEELTAKkm 489
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   379 -LNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRI------LQSKEKLINSLKE 451
Cdd:pfam15921  490 tLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECealklqMAEKDKVIEILRQ 569
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   452 G----SGFEGLDSSTASSMELEELRHEKEM--QREEIQKLM-------GQIHQLRSELQDMEAQQVNEAESAREQLQDL- 517
Cdd:pfam15921  570 QienmTQLVGQHGRTAGAMQVEKAQLEKEIndRRLELQEFKilkdkkdAKIRELEARVSDLELEKVKLVNAGSERLRAVk 649
                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767982138   518 -----HDQIAGQ-KASKQELET---ELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQL 574
Cdd:pfam15921  650 dikqeRDQLLNEvKTSRNELNSlseDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTL 715
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
343-583 3.76e-07

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 52.84  E-value: 3.76e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 343 QNQALQTFQERLHEADATLKREQESYKQMQSEfaarLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLE 422
Cdd:COG4942   18 QADAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 423 SSKQELIDYKQKATRILQSKEKL--INSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQdme 500
Cdd:COG4942   94 ELRAELEAQKEELAELLRALYRLgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE--- 170
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 501 aQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLS 580
Cdd:COG4942  171 -AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFA 249

                 ...
gi 767982138 581 NSS 583
Cdd:COG4942  250 ALK 252
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
218-571 5.08e-07

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 52.85  E-value: 5.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 218 DGKSHELSNLRLENQLLRNEVQSLN---------QEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVD 288
Cdd:COG4717   98 EELEEELEELEAELEELREELEKLEkllqllplyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQE 177
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 289 DLTEAV----AAKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDqsEGNSLQNQALQTFQERLHEADATLK-- 362
Cdd:COG4717  178 ELEELLeqlsLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE--LEQLENELEAAALEERLKEARLLLLia 255
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 363 ----------REQESYKQMQSEFAA-----------RLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNL 421
Cdd:COG4717  256 aallallglgGSLLSLILTIAGVLFlvlgllallflLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLS 335
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 422 ESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDS--STASSMELEELRhEKEMQREEIQKLMGQIHQLRSELQDM 499
Cdd:COG4717  336 PEELLELLDRIEELQELLREAEELEEELQLEELEQEIAAllAEAGVEDEEELR-AALEQAEEYQELKEELEELEEQLEEL 414
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 500 -----EAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEED-----LYRTKNTLQSRIKDRDEEIQK 569
Cdd:COG4717  415 lgeleELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDgelaeLLQELEELKAELRELAEEWAA 494

                 ..
gi 767982138 570 LR 571
Cdd:COG4717  495 LK 496
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
222-542 7.05e-07

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 52.46  E-value: 7.05e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 222 HELSNLRLENQLLRNEVQSLNQEMASLLQR-SKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQ 300
Cdd:COG4717  156 EELRELEEELEELEAELAELQEELEELLEQlSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 301 LAVLKV--RLQEADQLLSTRTEALEALQSEKSRIMQDQSEGN-------------SLQNQALQTFQERLHEADATLKREQ 365
Cdd:COG4717  236 LEAAALeeRLKEARLLLLIAAALLALLGLGGSLLSLILTIAGvlflvlgllallfLLLAREKASLGKEAEELQALPALEE 315
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 366 ESYKQMQSEFAARLNKVEMERQNLAEAI--------TLAERKYSDEKKRVDELQQQVK-LYKLNLESSKQELI------- 429
Cdd:COG4717  316 LEEEELEELLAALGLPPDLSPEELLELLdrieelqeLLREAEELEEELQLEELEQEIAaLLAEAGVEDEEELRaaleqae 395
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 430 DYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDME-----AQQV 504
Cdd:COG4717  396 EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEedgelAELL 475
                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 767982138 505 NEAESAREQLQDLHDQIAGQKASKQELETELERLKQEF 542
Cdd:COG4717  476 QELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
223-624 9.20e-07

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 52.37  E-value: 9.20e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRgLRAQVDDLTEAvaakdsqLA 302
Cdd:PRK03918 239 EIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK-LSEFYEEYLDE-------LR 310
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 303 VLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQaLQTFQERlHEADATLKREQESYKQMQSEFAAR-LNK 381
Cdd:PRK03918 311 EIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKR-LEELEER-HELYEEAKAKKEELERLKKRLTGLtPEK 388
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 382 VEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNL------------------ESSKQELI-DYKQKATRILQSK 442
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIeelkkakgkcpvcgreltEEHRKELLeEYTAELKRIEKEL 468
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 443 EKLINSLKEgsgfegldsstaSSMELEELRHEKEMQREEI--QKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQ 520
Cdd:PRK03918 469 KEIEEKERK------------LRKELRELEKVLKKESELIklKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIK 536
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 521 IAGQKAS-------KQELETELERLKQEFHYIEEDLYRTKNTLQSR----IKDRDEEIQKLRnQLTNKTLS-NSSQSELE 588
Cdd:PRK03918 537 LKGEIKSlkkelekLEELKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELE-PFYNEYLElKDAEKELE 615
                        410       420       430
                 ....*....|....*....|....*....|....*....
gi 767982138 589 ---NRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQ 624
Cdd:PRK03918 616 reeKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
377-551 9.77e-07

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 50.31  E-value: 9.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 377 ARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKlyKLNLESSKQELiDYKQKATRILQSKEKL--INSLKEgsg 454
Cdd:COG1579   17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELE--DLEKEIKRLEL-EIEEVEARIKKYEEQLgnVRNNKE--- 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 455 FEGLdsstasSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETE 534
Cdd:COG1579   91 YEAL------QKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAE 164
                        170
                 ....*....|....*..
gi 767982138 535 LERLKQEfhyIEEDLYR 551
Cdd:COG1579  165 REELAAK---IPPELLA 178
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
223-613 2.19e-06

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 51.17  E-value: 2.19e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLA 302
Cdd:TIGR04523 219 QISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEIS 298
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  303 VLKV-------------------RLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSlQNQALQTFQERLHEADATLKR 363
Cdd:TIGR04523 299 DLNNqkeqdwnkelkselknqekKLEEIQNQISQNNKIISQLNEQISQLKKELTNSES-ENSEKQRELEEKQNEIEKLKK 377
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  364 EQESYKQmqsefaarlnkvemERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQkaTRILQSKE 443
Cdd:TIGR04523 378 ENQSYKQ--------------EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE--TIIKNNSE 441
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  444 klINSLKEgsgfegldSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQV----------NEAESAREQ 513
Cdd:TIGR04523 442 --IKDLTN--------QDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKskekelkklnEEKKELEEK 511
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  514 LQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYR-----TKNTLQSRIKDRDEEIQKLRNqltNKTLSNSSQSELE 588
Cdd:TIGR04523 512 VKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKddfelKKENLEKEIDEKNKEIEELKQ---TQKSLKKKQEEKQ 588
                         410       420
                  ....*....|....*....|....*...
gi 767982138  589 NRLHQLTE---TLIQKQTMLESLSTEKN 613
Cdd:TIGR04523 589 ELIDQKEKekkDLIKEIEEKEKKISSLE 616
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
223-430 2.49e-06

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 50.84  E-value: 2.49e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLA 302
Cdd:TIGR02169  820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLR 899
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   303 VLKVRLQEADqllstrtealEALQSEKSRImqdqsegnSLQNQALQTFQERLHEADATLKREQESykqmqSEFAARLNKV 382
Cdd:TIGR02169  900 ELERKIEELE----------AQIEKKRKRL--------SELKAKLEALEEELSEIEDPKGEDEEI-----PEEELSLEDV 956
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 767982138   383 EMERQNLAEAIT-------LAERKYSDEKKRVDELQQqvKLYKLNLESSK-QELID 430
Cdd:TIGR02169  957 QAELQRVEEEIRalepvnmLAIQEYEEVLKRLDELKE--KRAKLEEERKAiLERIE 1010
46 PHA02562
endonuclease subunit; Provisional
303-539 3.08e-06

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 50.40  E-value: 3.08e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 303 VLKVRLQEADQLLSTRTEALEALQsEKSRIMQD-QSEGNSLQNQALQTFQERLHEadatLKREQESYKQMQSEFAARLNK 381
Cdd:PHA02562 171 LNKDKIRELNQQIQTLDMKIDHIQ-QQIKTYNKnIEEQRKKNGENIARKQNKYDE----LVEEAKTIKAEIEELTDELLN 245
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 382 VEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLN---------LESSKQELIDYKQKATRILQSKEKLINSLKEG 452
Cdd:PHA02562 246 LVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEKGgvcptctqqISEGPDRITKIKDKLKELQHSLEKLDTAIDEL 325
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 453 SgfEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESA---REQLQDLHDQIAGQKASKQ 529
Cdd:PHA02562 326 E--EIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELaklQDELDKIVKTKSELVKEKY 403
                        250
                 ....*....|
gi 767982138 530 ELETELERLK 539
Cdd:PHA02562 404 HRGIVTDLLK 413
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
467-625 3.20e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 49.76  E-value: 3.20e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 467 ELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQqvneAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIE 546
Cdd:COG4942   28 ELEQLQQEIAELEKELAALKKEEKALLKQLAALERR----IAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 547 EDL----------------------------YRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETL 598
Cdd:COG4942  104 EELaellralyrlgrqpplalllspedfldaVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAEL 183
                        170       180
                 ....*....|....*....|....*..
gi 767982138 599 IQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:COG4942  184 EEERAALEALKAERQKLLARLEKELAE 210
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
223-624 5.72e-06

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 49.65  E-value: 5.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADhsksdrmTRGLRAQVDDLTEAVAAKDSQLA 302
Cdd:PRK02224 294 ERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE-------AESLREDADDLEERAEELREEAA 366
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 303 VLKVRLQEADQLLSTRTEALEALQSEksrimqdqsegnslqnqaLQTFQERLHEADATLKREQESYKQMQSEFAA---RL 379
Cdd:PRK02224 367 ELESELEEAREAVEDRREEIEELEEE------------------IEELRERFGDAPVDLGNAEDFLEELREERDElreRE 428
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 380 NKVEMERQNLAEAITLAER--------------KYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRI--LQSKE 443
Cdd:PRK02224 429 AELEATLRTARERVEEAEAlleagkcpecgqpvEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAedLVEAE 508
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 444 KLINSLKEgsgfegldsstassmeleelrhekemQREEIQKLmgqIHQLRSELQDMEAQqvneAESAREQLQDLHDQIAG 523
Cdd:PRK02224 509 DRIERLEE--------------------------RREDLEEL---IAERRETIEEKRER----AEELRERAAELEAEAEE 555
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 524 QKASKQELETELERLKQEFHYIEEDLYRTKNTLQS--RIKDRDEEIQKLRNQLtnktlsnssqSELENRLHQLTETLIQK 601
Cdd:PRK02224 556 KREAAAEAEEEAEEAREEVAELNSKLAELKERIESleRIRTLLAAIADAEDEI----------ERLREKREALAELNDER 625
                        410       420
                 ....*....|....*....|....*
gi 767982138 602 QTMLESLSTEKNSLV--FQLERLEQ 624
Cdd:PRK02224 626 RERLAEKRERKRELEaeFDEARIEE 650
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
220-435 6.74e-06

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 48.99  E-value: 6.74e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 220 KSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKsdrmtrgLRAQVDDLTEAVAAkds 299
Cdd:COG4942   39 LEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE-------LRAELEAQKEELAE--- 108
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 300 QLAVL-KVRLQEADQLLSTRTEALEALQSekSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAAR 378
Cdd:COG4942  109 LLRALyRLGRQPPLALLLSPEDFLDAVRR--LQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEE 186
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 767982138 379 LNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKA 435
Cdd:COG4942  187 RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
SMC_prok_B TIGR02168
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ...
218-413 7.82e-06

chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274008 [Multi-domain]  Cd Length: 1179  Bit Score: 49.28  E-value: 7.82e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   218 DGKSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAK 297
Cdd:TIGR02168  806 DELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASL 885
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   298 DSQLAVLKVRLQEADqllstrtEALEALQSEKSRIMQDQSEgnslQNQALQTFQERLHEADATLKREQ----ESYKQMQS 373
Cdd:TIGR02168  886 EEALALLRSELEELS-------EELRELESKRSELRRELEE----LREKLAQLELRLEGLEVRIDNLQerlsEEYSLTLE 954
                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....
gi 767982138   374 EFAARLNKVEMERQNLAEAITLAERK--------------YSDEKKRVDELQQQ 413
Cdd:TIGR02168  955 EAEALENKIEDDEEEARRRLKRLENKikelgpvnlaaieeYEELKERYDFLTAQ 1008
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
397-624 7.95e-06

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 49.24  E-value: 7.95e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 397 ERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKaTRILQSKEKLINSLKEgsgfegLDSSTASSMELEELRHEKE 476
Cdd:COG3206  167 ELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQK-NGLVDLSEEAKLLLQQ------LSELESQLAEARAELAEAE 239
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 477 MQREEIQKLMGQ-------------IHQLRSELQDMEAQQvneaESAREQLQDLHDQIAGQKASKQELETELERLKQEfh 543
Cdd:COG3206  240 ARLAALRAQLGSgpdalpellqspvIQQLRAQLAELEAEL----AELSARYTPNHPDVIALRAQIAALRAQLQQEAQR-- 313
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 544 yIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLtnktlsnSSQSELENRLHQLTETLIQKQTMLESLsteknslvfqLERLE 623
Cdd:COG3206  314 -ILASLEAELEALQAREASLQAQLAQLEARL-------AELPELEAELRRLEREVEVARELYESL----------LQRLE 375

                 .
gi 767982138 624 Q 624
Cdd:COG3206  376 E 376
PLN02939 PLN02939
transferase, transferring glycosyl groups
168-469 8.27e-06

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 49.13  E-value: 8.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 168 IKTIEENSFGSQTHEAASNSDSSHEGQEESSKENVSSNAACPDHTPTPNDDGKSHELSNLRLENQLLRNEVQSLNQEMAS 247
Cdd:PLN02939 172 INILEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIE 251
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 248 LlqrsKETQEelnkaraRVEKWNADHSKSDRMTRGLRAQVDDLTEAVaakdSQLAVLKVrlqeadQLLSTRTEALEALqs 327
Cdd:PLN02939 252 V----AETEE-------RVFKLEKERSLLDASLRELESKFIVAQEDV----SKLSPLQY------DCWWEKVENLQDL-- 308
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 328 eksrimqdqsegnslqnqaLQTFQERLHEADATLKREQESYKqmqsefaarlnKVEMERQNLAEAITlaeRKYSDEKkrV 407
Cdd:PLN02939 309 -------------------LDRATNQVEKAALVLDQNQDLRD-----------KVDKLEASLKEANV---SKFSSYK--V 353
                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767982138 408 DELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSStASSMELE 469
Cdd:PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHP-ADDMPSE 414
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
223-420 1.09e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 48.86  E-value: 1.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 223 ELSNLRLENQLLrnevqSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTE--AVAAKDSQ 300
Cdd:COG3206  197 ALEEFRQKNGLV-----DLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspVIQQLRAQ 271
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 301 LAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMqsefAARLN 380
Cdd:COG3206  272 LAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEAR----LAELP 347
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 767982138 381 KVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLN 420
Cdd:COG3206  348 ELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGN 387
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
284-538 1.24e-05

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 48.66  E-value: 1.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  284 RAQVDDLTEAVAAKDSQLAVL-------KVRLQEADQLLSTRTEALEALQSEKS------RIMQDQSEGNSLQNQALQTF 350
Cdd:pfam10174 323 KQHIEVLKESLTAKEQRAAILqtevdalRLRLEEKESFLNKKTKQLQDLTEEKStlageiRDLKDMLDVKERKINVLQKK 402
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  351 QERLHEAdatlKREQEsyKQMqSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKL----YKLNLESSKQ 426
Cdd:pfam10174 403 IENLQEQ----LRDKD--KQL-AGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQRERedreRLEELESLKK 475
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  427 ELIDYKQKAT---RILQSKEKLINSLKEGSgfegldSSTASSM-----ELEELRHEKEMQREEIQKLMGQIHQlrselqd 498
Cdd:pfam10174 476 ENKDLKEKVSalqPELTEKESSLIDLKEHA------SSLASSGlkkdsKLKSLEIAVEQKKEECSKLENQLKK------- 542
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 767982138  499 meAQQVNEAESARE----QLQDLHDQIAGQKASKQELETELERL 538
Cdd:pfam10174 543 --AHNAEEAVRTNPeindRIRLLEQEVARYKEESGKAQAEVERL 584
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
220-621 1.32e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 48.48  E-value: 1.32e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  220 KSHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKAR---ARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAA 296
Cdd:TIGR04523 150 KEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKnklLKLELLLSNLKKKIQKNKSLESQISELKKQNNQ 229
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  297 KDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQErLHEADATLKREQESYKQMQSEfa 376
Cdd:TIGR04523 230 LKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKE-LEKQLNQLKSEISDLNNQKEQ-- 306
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  377 ARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKlyklNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGfE 456
Cdd:TIGR04523 307 DWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS----QLKKELTNSESENSEKQRELEEKQNEIEKLKKENQ-S 381
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  457 GLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVN---EAESAREQLQDLHDQIAGQKASKQELET 533
Cdd:TIGR04523 382 YKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERlkeTIIKNNSEIKDLTNQDSVKELIIKNLDN 461
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  534 ELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLrNQLTNKTlsnssqSELENRLHQLTE---TLIQKQTMLESLST 610
Cdd:TIGR04523 462 TRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL-KKLNEEK------KELEEKVKDLTKkisSLKEKIEKLESEKK 534
                         410
                  ....*....|.
gi 767982138  611 EKNSLVFQLER 621
Cdd:TIGR04523 535 EKESKISDLED 545
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
283-517 1.42e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 48.47  E-value: 1.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 283 LRAQVDDLTEAVAAKDSQLAVLKVRLQEADQllstrteALEALQsEKSRIMQDQSEGNSLQNQaLQTFQERLHEADATLK 362
Cdd:COG3206  166 LELRREEARKALEFLEEQLPELRKELEEAEA-------ALEEFR-QKNGLVDLSEEAKLLLQQ-LSELESQLAEARAELA 236
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 363 REQESYKQMQSEFAARLNKVEM-----ERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELidyKQKATR 437
Cdd:COG3206  237 EAEARLAALRAQLGSGPDALPEllqspVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL---QQEAQR 313
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 438 ILQSKEKLINSLKEgsgfegldsstassmELEELRHEKEMQREEIQKLMgqihQLRSELQDMEaqqvNEAESAREQLQDL 517
Cdd:COG3206  314 ILASLEAELEALQA---------------REASLQAQLAQLEARLAELP----ELEAELRRLE----REVEVARELYESL 370
PTZ00121 PTZ00121
MAEBL; Provisional
253-625 2.19e-05

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 48.21  E-value: 2.19e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  253 KETQEELNKARARVEKWNADHSKSDRMTRGLRAQVD-DLTEAVAAKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSR 331
Cdd:PTZ00121 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKaDEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAK 1463
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  332 IMQDQSEgnslQNQALQTFQERLHEADATLKREQESYKQmqsefAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQ 411
Cdd:PTZ00121 1464 KKAEEAK----KADEAKKKAEEAKKADEAKKKAEEAKKK-----ADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAK 1534
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  412 QQVKLYKLNLESSKQELidYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQ 491
Cdd:PTZ00121 1535 KADEAKKAEEKKKADEL--KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  492 LRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELE----RLKQEFHYIEEDlyrtkntlqsriKDRDEEI 567
Cdd:PTZ00121 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEenkiKAAEEAKKAEED------------KKKAEEA 1680
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 767982138  568 QKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:PTZ00121 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKE 1738
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
360-625 2.38e-05

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 47.71  E-value: 2.38e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  360 TLKREQESYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATR-- 437
Cdd:TIGR04523 121 KLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKle 200
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  438 ----ILQSKEKLINSL-KEGSGFEGLDSSTASSmeLEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQ---QVNEAES 509
Cdd:TIGR04523 201 lllsNLKKKIQKNKSLeSQISELKKQNNQLKDN--IEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQlseKQKELEQ 278
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  510 AREQLQDLHDQIagqkaskQELETELERLKQEfhyIEEDLyrtKNTLQSRIKDRDEEIQKLRNQLTNktlSNSSQSELEN 589
Cdd:TIGR04523 279 NNKKIKELEKQL-------NQLKSEISDLNNQ---KEQDW---NKELKSELKNQEKKLEEIQNQISQ---NNKIISQLNE 342
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 767982138  590 RLHQL--------------TETLIQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:TIGR04523 343 QISQLkkeltnsesensekQRELEEKQNEIEKLKKENQSYKQEIKNLESQ 392
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
223-580 2.43e-05

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 47.75  E-value: 2.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQ---EELNKARARVEKWNADHSKSDR--MTRGLRAQVDDLTEAVAAK 297
Cdd:PRK03918 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKkaiEELKKAKGKCPVCGRELTEEHRkeLLEEYTAELKRIEKELKEI 471
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 298 DSQLAVLKVRLQEADQLLS---------TRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESY 368
Cdd:PRK03918 472 EEKERKLRKELRELEKVLKkeseliklkELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKL 551
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 369 KQMQSEFAARLNKVEMERQNLAEAIT-LAERKYSDEKKRVDELQQQVKLYK--LNLESSKQELidykqkatrilQSKEKL 445
Cdd:PRK03918 552 EELKKKLAELEKKLDELEEELAELLKeLEELGFESVEELEERLKELEPFYNeyLELKDAEKEL-----------EREEKE 620
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 446 INSLKEgsgfegldsstassmELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQV-NEAESAREQLQDLHDQIAGQ 524
Cdd:PRK03918 621 LKKLEE---------------ELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELrEEYLELSRELAGLRAELEEL 685
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 767982138 525 KASKQELETELERLKQEFHYIEEDLYRTK--NTLQSRIKDRDEEIQKLRNQLTNKTLS 580
Cdd:PRK03918 686 EKRREEIKKTLEKLKEELEEREKAKKELEklEKALERVEELREKVKKYKALLKERALS 743
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
239-449 2.49e-05

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 47.70  E-value: 2.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 239 QSLNQEMASLLQRSKETQEELNKARARVEKWNADHS--KSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKVRLQEADQLLS 316
Cdd:COG3206  164 QNLELRREEARKALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLA 243
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 317 TRTEALEALQSEKSRIMQDQSEGNSLQNqaLQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAEAItla 396
Cdd:COG3206  244 ALRAQLGSGPDALPELLQSPVIQQLRAQ--LAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQQEAQRILASL--- 318
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 767982138 397 ERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQkATRILQSKEKLINSL 449
Cdd:COG3206  319 EAELEALQAREASLQAQLAQLEARLAELPELEAELRR-LEREVEVARELYESL 370
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
232-612 2.66e-05

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 47.20  E-value: 2.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  232 QLLRNEVQSLNQEMASLLQRSKETQEELNKARarvEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKVRLQEA 311
Cdd:pfam07888  30 ELLQNRLEECLQERAELLQAQEAANRQREKEK---ERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKEL 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  312 DQLLSTRTEALEALQSEKS----RIMQDQSEGNSLQNQA------LQTFQERLHEADATLKREQESYKQMQSEfaarLNK 381
Cdd:pfam07888 107 SASSEELSEEKDALLAQRAaheaRIRELEEDIKTLTQRVlereteLERMKERAKKAGAQRKEEEAERKQLQAK----LQQ 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  382 VEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSS 461
Cdd:pfam07888 183 TEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERLNASERKVEGLGEELSS 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  462 TASSMEleelRHEKEMQREEIQ--KLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLK 539
Cdd:pfam07888 263 MAAQRD----RTQAELHQARLQaaQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQEER 338
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767982138  540 QEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLtnktlsNSSQSELENRLHQLTETLI---QKQTMLESLSTEK 612
Cdd:pfam07888 339 MEREKLEVELGREKDCNRVQLSESRRELQELKASL------RVAQKEKEQLQAEKQELLEyirQLEQRLETVADAK 408
DUF5401 pfam17380
Family of unknown function (DUF5401); This is a family of unknown function found in ...
332-615 3.14e-05

Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.


Pssm-ID: 375164 [Multi-domain]  Cd Length: 722  Bit Score: 47.43  E-value: 3.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  332 IMQDQSEGNSLQNQAL--QTFQERLHEADATLKREQESYKQM-------------QSEFAARLNKVEMERQNLAEAITLA 396
Cdd:pfam17380 277 IVQHQKAVSERQQQEKfeKMEQERLRQEKEEKAREVERRRKLeeaekarqaemdrQAAIYAEQERMAMERERELERIRQE 356
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  397 ERKYSDEKKRVDELQQQV----KLYKLNLE-SSKQELIDYKQKATRilqsKEKLINSLKEGSGFEGLDSSTASSMELEEL 471
Cdd:pfam17380 357 ERKRELERIRQEEIAMEIsrmrELERLQMErQQKNERVRQELEAAR----KVKILEEERQRKIQQQKVEMEQIRAEQEEA 432
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  472 RhEKEMQR--EEIQKLMGQIHQLRSELQ-DMEAQQVNEAESAREQLQDLHDQIAGQKASKQE---LETELERLKQEFhyI 545
Cdd:pfam17380 433 R-QREVRRleEERAREMERVRLEEQERQqQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRrkiLEKELEERKQAM--I 509
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767982138  546 EEDlyRTKNTLQSRIKDRDEEI-QKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSL 615
Cdd:pfam17380 510 EEE--RKRKLLEKEMEERQKAIyEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMM 578
mukB PRK04863
chromosome partition protein MukB;
343-625 4.42e-05

chromosome partition protein MukB;


Pssm-ID: 235316 [Multi-domain]  Cd Length: 1486  Bit Score: 46.87  E-value: 4.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  343 QNQALQTFQERLHEADATLKREQESYKQMQSEFAarlnkvemerqNLAEAITLAERK---YSDEKKRVDELQQQVKLYKL 419
Cdd:PRK04863  367 QNEVVEEADEQQEENEARAEAAEEEVDELKSQLA-----------DYQQALDVQQTRaiqYQQAVQALERAKQLCGLPDL 435
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  420 NLESSKQELIDYKQKA----TRILQSKEKLINSLKEGSGFE-----------GLDSSTASSMELEELRhekemQREEIQK 484
Cdd:PRK04863  436 TADNAEDWLEEFQAKEqeatEELLSLEQKLSVAQAAHSQFEqayqlvrkiagEVSRSEAWDVARELLR-----RLREQRH 510
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  485 LMGQIHQLRSELQDMEaQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLyRTKNTLQSRIKDRD 564
Cdd:PRK04863  511 LAEQLQQLRMRLSELE-QRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESV-SEARERRMALRQQL 588
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767982138  565 EEIQKLRNQLTNK------------TLSNSSQSELENRlHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:PRK04863  589 EQLQARIQRLAARapawlaaqdalaRLREQSGEEFEDS-QDVTEYMQQLLERERELTVERDELAARKQALDEE 660
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
233-451 4.65e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 46.30  E-value: 4.65e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 233 LLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKVRLQEAD 312
Cdd:COG4942   10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELE 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 313 QLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQS---EFAARLNKVEMERQNL 389
Cdd:COG4942   90 KEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREqaeELRADLAELAALRAEL 169
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767982138 390 AEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKE 451
Cdd:COG4942  170 EAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
237-409 4.88e-05

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 45.30  E-value: 4.88e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 237 EVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKsdrmtrgLRAQVDDLTEAVAAKDSQLAVLKVRLQEA-DQLL 315
Cdd:COG1579   11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEA-------AKTELEDLEKEIKRLELEIEEVEARIKKYeEQLG 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 316 STRTE-ALEALQSEksriMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAEAIT 394
Cdd:COG1579   84 NVRNNkEYEALQKE----IESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELE 159
                        170
                 ....*....|....*
gi 767982138 395 LAERKYSDEKKRVDE 409
Cdd:COG1579  160 ELEAEREELAAKIPP 174
RecN COG0497
DNA repair ATPase RecN [Replication, recombination and repair];
239-495 5.26e-05

DNA repair ATPase RecN [Replication, recombination and repair];


Pssm-ID: 440263 [Multi-domain]  Cd Length: 555  Bit Score: 46.22  E-value: 5.26e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 239 QSLNQEMASLLQRSKETQEELNKARARVEKWNADHsksDRmtrgLRAQVDDLTEA--VAAKDSQLAVLKVRLQEADQLLS 316
Cdd:COG0497  154 EELLEEYREAYRAWRALKKELEELRADEAERAREL---DL----LRFQLEELEAAalQPGEEEELEEERRRLSNAEKLRE 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 317 TRTEALEALqseksrimqDQSEGNSLQ--NQALQTFqERLHEADATLK----REQESYKQMQ---SEFAARLNKVEMERQ 387
Cdd:COG0497  227 ALQEALEAL---------SGGEGGALDllGQALRAL-ERLAEYDPSLAelaeRLESALIELEeaaSELRRYLDSLEFDPE 296
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 388 NLAEAITlaerkysdekkRVDELQQQVKLYKLNLEsskqELIDYKQKAtrilqsKEKLinslkegsgfEGLDSSTAssmE 467
Cdd:COG0497  297 RLEEVEE-----------RLALLRRLARKYGVTVE----ELLAYAEEL------RAEL----------AELENSDE---R 342
                        250       260
                 ....*....|....*....|....*...
gi 767982138 468 LEELRHEKEMQREEIQKLMGQIHQLRSE 495
Cdd:COG0497  343 LEELEAELAEAEAELLEAAEKLSAARKK 370
ADIP pfam11559
Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at ...
479-575 6.61e-05

Afadin- and alpha -actinin-Binding; This family is found in mammals where it is localized at cell-cell adherens junctions, and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins localized at Cell-Cell Adherens Junctions.


Pssm-ID: 463295 [Multi-domain]  Cd Length: 151  Bit Score: 43.46  E-value: 6.61e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  479 REEIQKLMGQIHQLRSELQdmeaQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQS 558
Cdd:pfam11559  51 LEFRESLNETIRTLEAEIE----RLQSKIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEELQRLKNALQQ 126
                          90       100
                  ....*....|....*....|....
gi 767982138  559 R-------IKDRDEEIQKLRNQLT 575
Cdd:pfam11559 127 IktqfaheVKKRDREIEKLKERLA 150
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
376-602 7.02e-05

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 45.53  E-value: 7.02e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 376 AARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKatriLQSKEKLINSLKEgsgf 455
Cdd:COG4942   19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE----LAALEAELAELEK---- 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 456 egldsstassmELEELRHEKEMQREEIQKLMGQIHQLRSELQDM---EAQQVNEAESAREQLQDLH----DQIAGQKASK 528
Cdd:COG4942   91 -----------EIAELRAELEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLAparrEQAEELRADL 159
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767982138 529 QELET---ELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQ 602
Cdd:COG4942  160 AELAAlraELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
46 PHA02562
endonuclease subunit; Provisional
329-584 7.66e-05

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 45.78  E-value: 7.66e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 329 KSRIMQDQSEGNSLQNQaLQTFQERLheadATLKREQESYKQMQSEFAARLNKVEMERQNLAEAItlaerkysdeKKRVD 408
Cdd:PHA02562 173 KDKIRELNQQIQTLDMK-IDHIQQQI----KTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTI----------KAEIE 237
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 409 ELQQQVKLYKLNLESSKQELIDYKQKATRIlQSKEKLINslKEGSGFEGLDSSTASSMELEElrhekemQREEIQKLMGQ 488
Cdd:PHA02562 238 ELTDELLNLVMDIEDPSAALNKLNTAAAKI-KSKIEQFQ--KVIKMYEKGGVCPTCTQQISE-------GPDRITKIKDK 307
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 489 IHQLrselqdmeAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTK---NTLQSRIKDRDE 565
Cdd:PHA02562 308 LKEL--------QHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKaaiEELQAEFVDNAE 379
                        250       260
                 ....*....|....*....|.
gi 767982138 566 EIQKLRNQL--TNKTLSNSSQ 584
Cdd:PHA02562 380 ELAKLQDELdkIVKTKSELVK 400
SMC_prok_A TIGR02169
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ...
223-495 1.46e-04

chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]


Pssm-ID: 274009 [Multi-domain]  Cd Length: 1164  Bit Score: 45.44  E-value: 1.46e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKS-----DRMTRGLRAQVDDLTEAVAAK 297
Cdd:TIGR02169  738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSripeiQAELSKLEEEVSRIEARLREI 817
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   298 DSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNsLQNQALQTFQERLHEADATLKREQESYKQMQSEFAA 377
Cdd:TIGR02169  818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN-GKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   378 RLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQE------LIDYKQKATRILQSKEKL--INSL 449
Cdd:TIGR02169  897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsLEDVQAELQRVEEEIRALepVNML 976
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*.
gi 767982138   450 KEgsgfEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSE 495
Cdd:TIGR02169  977 AI----QEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKRE 1018
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
223-570 1.50e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 45.31  E-value: 1.50e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLA 302
Cdd:COG1196  387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA 466
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 303 VLKVRLQEADQLLSTRTEALEALQSEKSRI--MQDQSEGNS--------------------------------LQNQALQ 348
Cdd:COG1196  467 ELLEEAALLEAALAELLEELAEAAARLLLLleAEADYEGFLegvkaalllaglrglagavavligveaayeaaLEAALAA 546
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 349 TFQERLHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAEAITL------------AERKYSDEKKRVDELQQQVKL 416
Cdd:COG1196  547 ALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALArgaigaavdlvaSDLREADARYYVLGDTLLGRT 626
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 417 YKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSEL 496
Cdd:COG1196  627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEE 706
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767982138 497 QDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKnTLQSRIKDRDEEIQKL 570
Cdd:COG1196  707 RELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE-ELERELERLEREIEAL 779
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
223-570 1.69e-04

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 44.93  E-value: 1.69e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLA 302
Cdd:COG1196  415 RLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL 494
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 303 VLKVRLQEADQLL-STRTEALEALQSEKSRIMQDQSEGNSLQNQALQTF-----QERLHEADATLKREQESYKQMQSEFA 376
Cdd:COG1196  495 LLLEAEADYEGFLeGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAAlaaalQNIVVEDDEVAAAAIEYLKAAKAGRA 574
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 377 ARLNKVEMERQNLAEAITL------------AERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEK 444
Cdd:COG1196  575 TFLPLDKIRARAALAAALArgaigaavdlvaSDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 445 LINSLKEGSGFEGLDSSTASSMELEELR-------------HEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAR 511
Cdd:COG1196  655 GGSAGGSLTGGSRRELLAALLEAEAELEelaerlaeeelelEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 512 EQLQDLHDQIAGQ-----------KASKQELETELERLKQ--------------EFHYIEE----------DLYRTKNTL 556
Cdd:COG1196  735 EELLEELLEEEELleeealeelpePPDLEELERELERLEReiealgpvnllaieEYEELEErydflseqreDLEEARETL 814
                        410
                 ....*....|....
gi 767982138 557 QSRIKDRDEEIQKL 570
Cdd:COG1196  815 EEAIEEIDRETRER 828
COG1340 COG1340
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
459-625 2.29e-04

Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];


Pssm-ID: 440951 [Multi-domain]  Cd Length: 297  Bit Score: 43.75  E-value: 2.29e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 459 DSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQvneaESAREQLQDLHDQIAGQKASKQELETELERL 538
Cdd:COG1340    1 SKTDELSSSLEELEEKIEELREEIEELKEKRDELNEELKELAEKR----DELNAQVKELREEAQELREKRDELNEKVKEL 76
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 539 KQEfhyieedlyrtKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLiqkQTmlESLSTEK-NSLVF 617
Cdd:COG1340   77 KEE-----------RDELNEKLNELREELDELRKELAELNKAGGSIDKLRKEIERLEWRQ---QT--EVLSPEEeKELVE 140

                 ....*...
gi 767982138 618 QLERLEQQ 625
Cdd:COG1340  141 KIKELEKE 148
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
223-469 3.57e-04

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 43.28  E-value: 3.57e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKwnadhsksdrmtrgLRAQVDDLTEAVAAKDSQLA 302
Cdd:COG3883   24 ELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDK--------------LQAEIAEAEAEIEERREELG 89
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 303 VLKVRLQEADQLLSTRTEALEAlqseksrimqdQSEGNSLQN-QALQTFQERLHEADATLKREQESYKQMQSEFAARLNK 381
Cdd:COG3883   90 ERARALYRSGGSVSYLDVLLGS-----------ESFSDFLDRlSALSKIADADADLLEELKADKAELEAKKAELEAKLAE 158
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 382 VEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSS 461
Cdd:COG3883  159 LEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238

                 ....*...
gi 767982138 462 TASSMELE 469
Cdd:COG3883  239 AAAAAASA 246
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
321-577 3.61e-04

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 43.89  E-value: 3.61e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  321 ALEALQSEKSRIMQD--QSEGNSLQNQ-----ALQTFQERLHEADATLKREQEsYKQMQSEFAaRLNKvEMERQNLAEAi 393
Cdd:PRK10929   17 AYAATAPDEKQITQEleQAKAAKTPAQaeiveALQSALNWLEERKGSLERAKQ-YQQVIDNFP-KLSA-ELRQQLNNER- 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  394 tlAERKYSDEKKRVDELQQQVklyklnLESSKQELIDYKQkatrilqskeklinslkegsgfegldsstassmeleeLRH 473
Cdd:PRK10929   93 --DEPRSVPPNMSTDALEQEI------LQVSSQLLEKSRQ-------------------------------------AQQ 127
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  474 EKEMQREeIQKLMGQIHQLRSELQdmeaQQVNEAES------------AREQLQDLHDQIAGQKASKQELEteLERL--- 538
Cdd:PRK10929  128 EQDRARE-ISDSLSQLPQQQTEAR----RQLNEIERrlqtlgtpntplAQAQLTALQAESAALKALVDELE--LAQLsan 200
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 767982138  539 -KQEFHYIEEDLYrtkntlQSRIKDRDEEIQKLRNQLTNK 577
Cdd:PRK10929  201 nRQELARLRSELA------KKRSQQLDAYLQALRNQLNSQ 234
GumC COG3206
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
344-541 4.17e-04

Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442439 [Multi-domain]  Cd Length: 687  Bit Score: 43.47  E-value: 4.17e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 344 NQALQTFQERlheadaTLKREQESYKQMQSEFAARLNKVemeRQNLAEAitlaERKYSD--EKKRVDELQQQVKLYKLNL 421
Cdd:COG3206  155 NALAEAYLEQ------NLELRREEARKALEFLEEQLPEL---RKELEEA----EAALEEfrQKNGLVDLSEEAKLLLQQL 221
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 422 ESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREE-----------IQKLMGQIH 490
Cdd:COG3206  222 SELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAElsarytpnhpdVIALRAQIA 301
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 767982138 491 QLRSELQDMEAQQV----NEAESAREQLQDLHDQIAGQKASKQEL---ETELERLKQE 541
Cdd:COG3206  302 ALRAQLQQEAQRILasleAELEALQAREASLQAQLAQLEARLAELpelEAELRRLERE 359
PTZ00121 PTZ00121
MAEBL; Provisional
244-583 5.28e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 43.59  E-value: 5.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  244 EMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRA-QVDDLTEAVAAKDSQLAVLKVRLQEADQLlstrTEAL 322
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAkKADEAKKAEEAKKADEAKKAEEKKKADEL----KKAE 1555
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  323 EALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAEAitlaeRKYSD 402
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL-----KKAEE 1630
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  403 EKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEElrhEKEMQREEI 482
Cdd:PTZ00121 1631 EKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA---EEAKKAEEL 1707
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  483 QKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKD 562
Cdd:PTZ00121 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
                         330       340
                  ....*....|....*....|.
gi 767982138  563 RDEEIQKLRNQLTNKTLSNSS 583
Cdd:PTZ00121 1788 EDEKRRMEVDKKIKDIFDNFA 1808
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
232-519 6.20e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 43.18  E-value: 6.20e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   232 QLLRNEVQSLNQ-------EMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDL----TEAVAAKDSQ 300
Cdd:pfam15921  565 EILRQQIENMTQlvgqhgrTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLelekVKLVNAGSER 644
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   301 LAVLKVRLQEADQLLstrtealealqsekSRIMQDQSEGNSLQNQ---ALQTFQERLHEADATLKREQESYKQMQSEFAA 377
Cdd:pfam15921  645 LRAVKDIKQERDQLL--------------NEVKTSRNELNSLSEDyevLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQ 710
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   378 RLNKVEMERQNLAEAITLA---ERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSG 454
Cdd:pfam15921  711 TRNTLKSMEGSDGHAMKVAmgmQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMAG 790
                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767982138   455 fegldsstassmELEELRHEKEMQREEIQKLmgQIHQLRSELQDMEAQ---QVNEAESAREQLQDLHD 519
Cdd:pfam15921  791 ------------ELEVLRSQERRLKEKVANM--EVALDKASLQFAECQdiiQRQEQESVRLKLQHTLD 844
DR0291 COG1579
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ...
411-573 7.33e-04

Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];


Pssm-ID: 441187 [Multi-domain]  Cd Length: 236  Bit Score: 41.83  E-value: 7.33e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 411 QQQVKLYKL-NLESSKQELIDYKQKATRILQSKEKLINSLKegsgfeglDSSTASSMELEELRHEKEMQREEIQKLMGQI 489
Cdd:COG1579    4 EDLRALLDLqELDSELDRLEHRLKELPAELAELEDELAALE--------ARLEAAKTELEDLEKEIKRLELEIEEVEARI 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 490 HQLRSELQ------DMEAQQvNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDR 563
Cdd:COG1579   76 KKYEEQLGnvrnnkEYEALQ-KEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
                        170
                 ....*....|
gi 767982138 564 DEEIQKLRNQ 573
Cdd:COG1579  155 EAELEELEAE 164
46 PHA02562
endonuclease subunit; Provisional
404-616 7.41e-04

endonuclease subunit; Provisional


Pssm-ID: 222878 [Multi-domain]  Cd Length: 562  Bit Score: 42.69  E-value: 7.41e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 404 KKRVDELQQQVKLYKLNLESSKQELIDYKqkatrilqskeKLINSLKEGSGfegldsstassmeleELRHEKEMQREEIQ 483
Cdd:PHA02562 173 KDKIRELNQQIQTLDMKIDHIQQQIKTYN-----------KNIEEQRKKNG---------------ENIARKQNKYDELV 226
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 484 KLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKAskqeletELERLKQEFHYIEEDlyRTKNTLQSRIKDR 563
Cdd:PHA02562 227 EEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS-------KIEQFQKVIKMYEKG--GVCPTCTQQISEG 297
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 767982138 564 DEEIQKLRNQLTNKTLS----NSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLV 616
Cdd:PHA02562 298 PDRITKIKDKLKELQHSleklDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLI 354
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
223-622 7.43e-04

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 42.85  E-value: 7.43e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   223 ELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLA 302
Cdd:pfam01576  518 QLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVS 597
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   303 VLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQ---NQALQTFQERLHEADATLKREQESYKQ-MQSEFAAR 378
Cdd:pfam01576  598 NLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRAlslARALEEALEAKEELERTNKQLRAEMEDlVSSKDDVG 677
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   379 LNKVEMERQNLAeaitlAERKYSDEKKRVDELQ---QQVKLYKLNLESSKQELidyKQKATRILQSKEKlinslkegsgf 455
Cdd:pfam01576  678 KNVHELERSKRA-----LEQQVEEMKTQLEELEdelQATEDAKLRLEVNMQAL---KAQFERDLQARDE----------- 738
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   456 EGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQqVNEAESARE-----------QLQDLHDQIAGQ 524
Cdd:pfam01576  739 QGEEKRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQ-IDAANKGREeavkqlkklqaQMKDLQRELEEA 817
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   525 KASKQEL-------ETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTET 597
Cdd:pfam01576  818 RASRDEIlaqskesEKKLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIAQLEEE 897
                          410       420
                   ....*....|....*....|....*
gi 767982138   598 LIQKQTMLESLSTEKNSLVFQLERL 622
Cdd:pfam01576  898 LEEEQSNTELLNDRLRKSTLQVEQL 922
PRK11281 PRK11281
mechanosensitive channel MscK;
512-624 7.95e-04

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 42.98  E-value: 7.95e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  512 EQLQDLHDQIAGQKASKQELETELERLKQefhyIE------EDLYRTKNTLQSRIKDRDEEIQKLRNQL---TNKTLSNS 582
Cdd:PRK11281   46 DALNKQKLLEAEDKLVQQDLEQTLALLDK----IDrqkeetEQLKQQLAQAPAKLRQAQAELEALKDDNdeeTRETLSTL 121
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 767982138  583 SQSELENRlhqLTETLIQKQTMLESLSTEKNSLVFQLERLEQ 624
Cdd:PRK11281  122 SLRQLESR---LAQTLDQLQNAQNDLAEYNSQLVSLQTQPER 160
ClpA COG0542
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ...
462-605 9.02e-04

ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440308 [Multi-domain]  Cd Length: 836  Bit Score: 42.76  E-value: 9.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 462 TASSMeleeLRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQvneAESAREQLQDLHDQIAgqkaskqELETELERLKQE 541
Cdd:COG0542  397 EAAAR----VRMEIDSKPEELDELERRLEQLEIEKEALKKEQ---DEASFERLAELRDELA-------ELEEELEALKAR 462
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767982138 542 FHyiEEdlyrtkntlqsriKDRDEEIQKLRNQLTNKtlsNSSQSELENRLHQLTETLIQKQTML 605
Cdd:COG0542  463 WE--AE-------------KELIEEIQELKEELEQR---YGKIPELEKELAELEEELAELAPLL 508
EzrA pfam06160
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ...
235-615 9.13e-04

Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.


Pssm-ID: 428797 [Multi-domain]  Cd Length: 542  Bit Score: 42.53  E-value: 9.13e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  235 RNEVQSLNQEMASLLQRSkeTQEELNKARA---------RVEKWNADHsksDRMTRGLRAQVDDLTEAVAAKDSQLAVLK 305
Cdd:pfam06160   9 YKEIDELEERKNELMNLP--VQEELSKVKKlnltgetqeKFEEWRKKW---DDIVTKSLPDIEELLFEAEELNDKYRFKK 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  306 VR--LQEADQLLSTRTEALEALQSEKSRIMqDQSEGNSLQNQALQtfqERLHEADATLKREQESYKQMQSEFAARLNKVE 383
Cdd:pfam06160  84 AKkaLDEIEELLDDIEEDIKQILEELDELL-ESEEKNREEVEELK---DKYRELRKTLLANRFSYGPAIDELEKQLAEIE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  384 merQNLAEAITLAER-KYSDEKKRVDELQQQVKlyklNLESSKQELIDYKQKATRILQSKeklINSLKEGsgfegLDSST 462
Cdd:pfam06160 160 ---EEFSQFEELTESgDYLEAREVLEKLEEETD----ALEELMEDIPPLYEELKTELPDQ---LEELKEG-----YREME 224
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  463 ASSMELEELRHEKEMQ--REEIQKLMGQIHQLRSElqdmEAQQVNEAESAR-EQLQD------------------LHDQI 521
Cdd:pfam06160 225 EEGYALEHLNVDKEIQqlEEQLEENLALLENLELD----EAEEALEEIEERiDQLYDllekevdakkyveknlpeIEDYL 300
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  522 AGQKASKQELETELERLKQEFHYIEEDLYRTKNtLQSRIKDRDEEIQKLRNQLTNKTlsnSSQSELENRLHQLTETLIQK 601
Cdd:pfam06160 301 EHAEEQNKELKEELERVQQSYTLNENELERVRG-LEKQLEELEKRYDEIVERLEEKE---VAYSELQEELEEILEQLEEI 376
                         410
                  ....*....|....
gi 767982138  602 QTMLESLSTEKNSL 615
Cdd:pfam06160 377 EEEQEEFKESLQSL 390
CCDC158 pfam15921
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ...
312-624 9.26e-04

Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.


Pssm-ID: 464943 [Multi-domain]  Cd Length: 1112  Bit Score: 42.80  E-value: 9.26e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   312 DQLLSTRTEaLEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATL-KREQESYKQMQSEFaarlNKVEMERQNLA 390
Cdd:pfam15921  145 NQLQNTVHE-LEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILvDFEEASGKKIYEHD----SMSTMHFRSLG 219
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   391 EAITLAERKYSDE----KKRVDELQQQVKLYKLNLESSKQELIDYKQ-KATRILQSKEKLINSLKE-GSGFEGLDSSTAS 464
Cdd:pfam15921  220 SAISKILRELDTEisylKGRIFPVEDQLEALKSESQNKIELLLQQHQdRIEQLISEHEVEITGLTEkASSARSQANSIQS 299
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   465 SMEL--EELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEF 542
Cdd:pfam15921  300 QLEIiqEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL 379
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   543 HYIEEDLYRTKNTL------QSRIKDRDE----EIQKLRNQLTNKTLS--------NSSQSELENRLHQLTETLIQKQTM 604
Cdd:pfam15921  380 QKLLADLHKREKELslekeqNKRLWDRDTgnsiTIDHLRRELDDRNMEvqrleallKAMKSECQGQMERQMAAIQGKNES 459
                          330       340
                   ....*....|....*....|
gi 767982138   605 LESLSteknSLVFQLERLEQ 624
Cdd:pfam15921  460 LEKVS----SLTAQLESTKE 475
Cast pfam10174
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ...
277-620 1.01e-03

RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.


Pssm-ID: 431111 [Multi-domain]  Cd Length: 766  Bit Score: 42.50  E-value: 1.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  277 DRMTRGLRAQVDDLTEAVAAKDSQLAVLKVRLQEADQLLSTRTEALEALQ---SEKSRIMQDQSEGNSLQNQALQTFQER 353
Cdd:pfam10174 393 ERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEealSEKERIIERLKEQREREDRERLEELES 472
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  354 LHEADATLKREQESYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSD-----EKKRVDELQQQVKLYK---------- 418
Cdd:pfam10174 473 LKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSleiavEQKKEECSKLENQLKKahnaeeavrt 552
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  419 -----LNLESSKQELIDYKQKATRILQSKEKLINSLKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQihqlr 493
Cdd:pfam10174 553 npeinDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQ----- 627
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  494 selQDMEAQQVNEAESAREQLQDLHDQIAGQKASkqELETELERLKQEFHYIEEDLYRTKNTLQSrikdRDEEIQKLRNQ 573
Cdd:pfam10174 628 ---QEMKKKGAQLLEEARRREDNLADNSQQLQLE--ELMGALEKTRQELDATKARLSSTQQSLAE----KDGHLTNLRAE 698
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*..
gi 767982138  574 ltnktlsnssqselenRLHQLTETLIQKQTMLESLSTEKNSLVFQLE 620
Cdd:pfam10174 699 ----------------RRKQLEEILEMKQEALLAAISEKDANIALLE 729
Myosin_tail_1 pfam01576
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ...
234-625 1.02e-03

Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.


Pssm-ID: 460256 [Multi-domain]  Cd Length: 1081  Bit Score: 42.47  E-value: 1.02e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   234 LRNEVQSLNQEMASLLQRSKETQEELNKARARVEkwnADHSKSDRMTRGLRAQVDDLTEAVAAKDSQLAVLKVRLQEADQ 313
Cdd:pfam01576  181 LKNKHEAMISDLEERLKKEEKGRQELEKAKRKLE---GESTDLQEQIAELQAQIAELRAQLAKKEEELQAALARLEEETA 257
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   314 LLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQT---FQERLHEADATLKREQESYKQMQSEFAARLNKVEMERQNLA 390
Cdd:pfam01576  258 QKNNALKKIRELEAQISELQEDLESERAARNKAEKQrrdLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALE 337
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   391 EAITLAERKYSDEKKR----VDELQQQV---KLYKLNLESSKQELidykQKATRILQSKEKLINSLKEGSGfEGLDSSTA 463
Cdd:pfam01576  338 EETRSHEAQLQEMRQKhtqaLEELTEQLeqaKRNKANLEKAKQAL----ESENAELQAELRTLQQAKQDSE-HKRKKLEG 412
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   464 SSMELEELRHEKEMQREEIQKlmgQIHQLRSELQDMEAqQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFH 543
Cdd:pfam01576  413 QLQELQARLSESERQRAELAE---KLSKLQSELESVSS-LLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLS 488
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   544 YIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNktlSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLE 623
Cdd:pfam01576  489 TRLRQLEDERNSLQEQLEEEEEAKRNVERQLST---LQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKA 565

                   ..
gi 767982138   624 QQ 625
Cdd:pfam01576  566 AA 567
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
308-625 1.04e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 42.65  E-value: 1.04e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   308 LQEADQLLSTRTEaLEALQSEKSRIMQDQSEGNSLQNQALQTFQERLHEADATLKREQESYKQMQSEFAARLNKveMERQ 387
Cdd:TIGR00618  183 LMEFAKKKSLHGK-AELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQ--LKKQ 259
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   388 NLAEAITLAERKYSDEKKRVDELQQQVKL--YKLNLESSKQELIDYKQKATRILQSKEKLINSLKegSGFEGLDSSTASS 465
Cdd:TIGR00618  260 QLLKQLRARIEELRAQEAVLEETQERINRarKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRA--KLLMKRAAHVKQQ 337
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   466 MELEELRH-EKEMQREEIqkLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETE------LERL 538
Cdd:TIGR00618  338 SSIEEQRRlLQTLHSQEI--HIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILqreqatIDTR 415
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   539 KQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQ 618
Cdd:TIGR00618  416 TSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLAR 495

                   ....*..
gi 767982138   619 LERLEQQ 625
Cdd:TIGR00618  496 LLELQEE 502
PRK02224 PRK02224
DNA double-strand break repair Rad50 ATPase;
278-615 1.20e-03

DNA double-strand break repair Rad50 ATPase;


Pssm-ID: 179385 [Multi-domain]  Cd Length: 880  Bit Score: 42.33  E-value: 1.20e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 278 RMTRGLRAQVDDLTEAVAAKDSqlAVLKVRLQEADQLLSTRTEALEALQSEKsrimqdqsegnslqnqalQTFQERLHEA 357
Cdd:PRK02224 180 RVLSDQRGSLDQLKAQIEEKEE--KDLHERLNGLESELAELDEEIERYEEQR------------------EQARETRDEA 239
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 358 DATLkreqESYKQMQSEfaarLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVklykLNLESSkqelidykqkatr 437
Cdd:PRK02224 240 DEVL----EEHEERREE----LETLEAEIEDLRETIAETEREREELAEEVRDLRERL----EELEEE------------- 294
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 438 ilqskeklINSLKEGSGFEGLDSSTASSmELEELRHEKEMQREEIQklmgqihQLRSELQDMEaqqvNEAESAREQLQDL 517
Cdd:PRK02224 295 --------RDDLLAEAGLDDADAEAVEA-RREELEDRDEELRDRLE-------ECRVAAQAHN----EEAESLREDADDL 354
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 518 hdqiagqkaskqelETELERLKQEFHYIEEDLYRTKNTL---QSRIKDRDEEIQKLRNQLTNktlSNSSQSELENRLHQL 594
Cdd:PRK02224 355 --------------EERAEELREEAAELESELEEAREAVedrREEIEELEEEIEELRERFGD---APVDLGNAEDFLEEL 417
                        330       340
                 ....*....|....*....|....*
gi 767982138 595 TET---LIQKQTMLE-SLSTEKNSL 615
Cdd:PRK02224 418 REErdeLREREAELEaTLRTARERV 442
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
376-608 1.42e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 42.21  E-value: 1.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  376 AARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKlNLESSKQELIDYKQKATRILQSKEKLinslkegsgf 455
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQ-RLAEYSWDEIDVASAEREIAELEAEL---------- 677
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  456 EGLDsstASSMELEELRHekemqreeiqklmgQIHQLRSELQDmeaqqvneaesAREQLQDLHDQIAGQKASKQELETEL 535
Cdd:COG4913   678 ERLD---ASSDDLAALEE--------------QLEELEAELEE-----------LEEELDELKGEIGRLEKELEQAEEEL 729
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767982138  536 ERLKQEFHYIEEDlyrtkntlqsRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESL 608
Cdd:COG4913   730 DELQDRLEAAEDL----------ARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERA 792
PLN02939 PLN02939
transferase, transferring glycosyl groups
247-576 1.45e-03

transferase, transferring glycosyl groups


Pssm-ID: 215507 [Multi-domain]  Cd Length: 977  Bit Score: 41.81  E-value: 1.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 247 SLLQRSKETQEELNKARAR-VEKWNADHSKSDRMTRGLRAQVDDltEAVAAKDSQLAvlkvRLQEADQLLSTRTEAL-EA 324
Cdd:PLN02939  63 SKLQSNTDENGQLENTSLRtVMELPQKSTSSDDDHNRASMQRDE--AIAAIDNEQQT----NSKDGEQLSDFQLEDLvGM 136
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 325 LQS-EKSRIMQDQSEGNSLQN--------QALQ----TFQERLHEADATLKREQesykqmQSEFAARLNKVEME--RQNL 389
Cdd:PLN02939 137 IQNaEKNILLLNQARLQALEDlekiltekEALQgkinILEMRLSETDARIKLAA------QEKIHVEILEEQLEklRNEL 210
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 390 AEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQ-SKEK--LINSLKEgsgfegLDSSTASSM 466
Cdd:PLN02939 211 LIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKlEKERslLDASLRE------LESKFIVAQ 284
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 467 E----LEELRHEKEMQR-EEIQKLMgqihqlrselqDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELET------EL 535
Cdd:PLN02939 285 EdvskLSPLQYDCWWEKvENLQDLL-----------DRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVskfssyKV 353
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|.
gi 767982138 536 ERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTN 576
Cdd:PLN02939 354 ELLQQKLKLLEERLQASDHEIHSYIQLYQESIKEFQDTLSK 394
YhaN COG4717
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
478-625 1.55e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];


Pssm-ID: 443752 [Multi-domain]  Cd Length: 641  Bit Score: 41.68  E-value: 1.55e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 478 QREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEE-----DLYRT 552
Cdd:COG4717   54 EADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKllqllPLYQE 133
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767982138 553 KNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLeSLSTEK--NSLVFQLERLEQQ 625
Cdd:COG4717  134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQL-SLATEEelQDLAEELEELQQR 207
Spc7 smart00787
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ...
439-622 1.75e-03

Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.


Pssm-ID: 197874 [Multi-domain]  Cd Length: 312  Bit Score: 41.16  E-value: 1.75e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   439 LQSKE-------KLINSLKEG--SGFEGLDSSTASSM-ELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAE 508
Cdd:smart00787 128 LEAKKmwyewrmKLLEGLKEGldENLEGLKEDYKLLMkELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELD 207
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   509 SAREQLQDLHDQIAGQKASKQELETELERLKQEfhyIEEdlyrtKNTLQSRIKDRDEEIQKLRNQltNKTLSNSSQSELE 588
Cdd:smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESK---IED-----LTNKKSELNTEIAEAEKKLEQ--CRGFTFKEIEKLK 277
                          170       180       190
                   ....*....|....*....|....*....|....
gi 767982138   589 NRLHQLtetliQKQTMLESLSTEKNSLVFQLERL 622
Cdd:smart00787 278 EQLKLL-----QSLTGWKITKLSGNTLSMTYDRE 306
Mplasa_alph_rch TIGR04523
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ...
366-623 2.82e-03

helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.


Pssm-ID: 275316 [Multi-domain]  Cd Length: 745  Bit Score: 40.77  E-value: 2.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  366 ESYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQ---KATRILQSK 442
Cdd:TIGR04523 207 KKKIQKNKSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKeleQNNKKIKEL 286
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  443 EKLINSLK------EGSGFEGLDSSTASSME-----LEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQV---NEAE 508
Cdd:TIGR04523 287 EKQLNQLKseisdlNNQKEQDWNKELKSELKnqekkLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSekqRELE 366
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  509 SAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDlyrtKNTLQSRIKDRDEEIQKLRNQLTN-KTLSNSSQSEL 587
Cdd:TIGR04523 367 EKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKL----NQQKDEQIKKLQQEKELLEKEIERlKETIIKNNSEI 442
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 767982138  588 ENrlhqLTETLIQKQTMLESLSTEKNSLVFQLERLE 623
Cdd:TIGR04523 443 KD----LTNQDSVKELIIKNLDNTRESLETQLKVLS 474
COG4913 COG4913
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
284-568 3.04e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];


Pssm-ID: 443941 [Multi-domain]  Cd Length: 1089  Bit Score: 41.05  E-value: 3.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  284 RAQVDDLTEAVAAKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSegnslqnqaLQTFQERLHEADATLKR 363
Cdd:COG4913   609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEID---------VASAEREIAELEAELER 679
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  364 EQESYKQMQsEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESskqelIDYKQKATRILQSKE 443
Cdd:COG4913   680 LDASSDDLA-ALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEA-----AEDLARLELRALLEE 753
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  444 KLINSLKEGSGFEGLDSSTASSMELEELRHEKEmqrEEIQKLMGQIHQL-RSELQDMEAqqvnEAESAREqLQDLHDQIA 522
Cdd:COG4913   754 RFAAALGDAVERELRENLEERIDALRARLNRAE---EELERAMRAFNREwPAETADLDA----DLESLPE-YLALLDRLE 825
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 767982138  523 gqkaskqelETELERLKQEF-HYIEEDLYRTKNTLQSRIKDRDEEIQ 568
Cdd:COG4913   826 ---------EDGLPEYEERFkELLNENSIEFVADLLSKLRRAIREIK 863
pepcterm_ChnLen TIGR03007
polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Members of this ...
398-608 3.13e-03

polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 274386 [Multi-domain]  Cd Length: 498  Bit Score: 40.80  E-value: 3.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  398 RKYSDEKKRVdeLQQQVKLYKLNLESSKQELIDYKQKATRILQskeklinslkegsgfeglDSSTASSMELEELRHEKEM 477
Cdd:TIGR03007 156 RQDSDSAQRF--IDEQIKTYEKKLEAAENRLKAFKQENGGILP------------------DQEGDYYSEISEAQEELEA 215
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  478 QREEIQKLMGQIHQLRSELQDMEAQQVNEAESA----REQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDL---Y 550
Cdd:TIGR03007 216 ARLELNEAIAQRDALKRQLGGEEPVLLAGSSVAnselDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKeeeG 295
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 767982138  551 RTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSqseLENRLHQLTETLIQKQTMLESL 608
Cdd:TIGR03007 296 SAKNGGPERGEIANPVYQQLQIELAEAEAEIAS---LEARVAELTARIERLESLLRTI 350
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
222-541 3.42e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 40.65  E-value: 3.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  222 HELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQ---EELNKARARVEKWNADHSKSdrmTRGLRAQVDDLTEAVAAKD 298
Cdd:pfam07888  73 RQRRELESRVAELKEELRQSREKHEELEEKYKELSassEELSEEKDALLAQRAAHEAR---IRELEEDIKTLTQRVLERE 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  299 SQLAVLKvrlQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLqNQALQTFQERLHEADATLKREQESYKQMQSEFAAR 378
Cdd:pfam07888 150 TELERMK---ERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSL-SKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTA 225
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  379 LNKVEMERQNLAEAITLAERKYSDEKKrVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEGSG-FEG 457
Cdd:pfam07888 226 HRKEAENEALLEELRSLQERLNASERK-VEGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRArWAQ 304
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  458 LDSSTASSMELEELRHEKemQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELER 537
Cdd:pfam07888 305 ERETLQQSAEADKDRIEK--LSAELQRLEERLQEERMEREKLEVELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQ 382

                  ....
gi 767982138  538 LKQE 541
Cdd:pfam07888 383 LQAE 386
MAD pfam05557
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ...
359-616 3.93e-03

Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.


Pssm-ID: 461677 [Multi-domain]  Cd Length: 660  Bit Score: 40.49  E-value: 3.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  359 ATLKREQESYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNL---ESSKQELIDYKQKA 435
Cdd:pfam05557   2 AELIESKARLSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREaeaEEALREQAELNRLK 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  436 TRILQSKEKLINSlKEGSGFEGLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELqDMEAQQVNEAESAREQLQ 515
Cdd:pfam05557  82 KKYLEALNKKLNE-KESQLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERL-DLLKAKASEAEQLRQNLE 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  516 DLHDQIAGQKASKQELETEL---ERLKQEFHYIEEDLYRTKnTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLH 592
Cdd:pfam05557 160 KQQSSLAEAEQRIKELEFEIqsqEQDSEIVKNSKSELARIP-ELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLE 238
                         250       260
                  ....*....|....*....|....*..
gi 767982138  593 QL---TETLIQKQTMLESLSTEKNSLV 616
Cdd:pfam05557 239 REekyREEAATLELEKEKLEQELQSWV 265
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
345-623 4.61e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 40.42  E-value: 4.61e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   345 QALQTFQERLHEADATLKreqesYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESS 424
Cdd:TIGR00606  193 QVRQTQGQKVQEHQMELK-----YLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKL 267
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   425 KQELIDYKQKATRILQSKEKLinSLKEGSGFEGLDSstassmELEELRH-------EKEMQREEIQKLMGQIHQLRSELQ 497
Cdd:TIGR00606  268 DNEIKALKSRKKQMEKDNSEL--ELKMEKVFQGTDE------QLNDLYHnhqrtvrEKERELVDCQRELEKLNKERRLLN 339
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   498 DMEAQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFH-YIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTN 576
Cdd:TIGR00606  340 QEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGpFSERQIKNFHTLVIERQEDEAKTAAQLCADLQS 419
                          250       260       270       280
                   ....*....|....*....|....*....|....*....|....*...
gi 767982138   577 K-TLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLE 623
Cdd:TIGR00606  420 KeRLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLE 467
235kDa-fam TIGR01612
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ...
356-613 5.51e-03

reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.


Pssm-ID: 130673 [Multi-domain]  Cd Length: 2757  Bit Score: 40.42  E-value: 5.51e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   356 EADATLK---REQESYKQMQSEFAARLNKV-EMERQNlaeaiTLAERKySDEKKRVDELQQQVKLYKLNLESSKQELIDY 431
Cdd:TIGR01612 1501 EADKNAKaieKNKELFEQYKKDVTELLNKYsALAIKN-----KFAKTK-KDSEIIIKEIKDAHKKFILEAEKSEQKIKEI 1574
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   432 KQKATRILQSKEKLINSLKEGSGFE-GLDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEaqqVNEAESA 510
Cdd:TIGR01612 1575 KKEKFRIEDDAAKNDKSNKAAIDIQlSLENFENKFLKISDIKKKINDCLKETESIEKKISSFSIDSQDTE---LKENGDN 1651
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   511 REQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKlrnqlTNKTLSNSSQSELENR 590
Cdd:TIGR01612 1652 LNSLQEFLESLKDQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGIIEKIKEIAI-----ANKEEIESIKELIEPT 1726
                          250       260       270
                   ....*....|....*....|....*....|
gi 767982138   591 LHQLTETL-------IQKQTMLESLSTEKN 613
Cdd:TIGR01612 1727 IENLISSFntndlegIDPNEKLEEYNTEIG 1756
ATG16 pfam08614
Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for ...
522-625 5.52e-03

Autophagy protein 16 (ATG16); Autophagy is a ubiquitous intracellular degradation system for eukaryotic cells. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. ATG16 (also known as Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway.


Pssm-ID: 462536 [Multi-domain]  Cd Length: 176  Bit Score: 38.37  E-value: 5.52e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  522 AGQKASKQELETELERLKQEfhyiEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNSSQ----SELENRLHQLTET 597
Cdd:pfam08614  46 SPQSASIQSLEQLLAQLREE----LAELYRSRGELAQRLVDLNEELQELEKKLREDERRLAALeaerAQLEEKLKDREEE 121
                          90       100
                  ....*....|....*....|....*...
gi 767982138  598 LIQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:pfam08614 122 LREKRKLNQDLQDELVALQLQLNMAEEK 149
rad50 TIGR00606
rad50; All proteins in this family for which functions are known are involvedin recombination, ...
284-625 6.53e-03

rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).


Pssm-ID: 129694 [Multi-domain]  Cd Length: 1311  Bit Score: 40.03  E-value: 6.53e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   284 RAQVDDLTEAVAAKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQALQTFQ---ERLHEADAT 360
Cdd:TIGR00606  230 EAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQgtdEQLNDLYHN 309
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   361 LKREQESYKQMQSEFAARLNKVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQEL-IDYKQKATRIL 439
Cdd:TIGR00606  310 HQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeLDGFERGPFSE 389
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   440 QSKEKLINSLKEGSGFEG--LDSSTASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDL 517
Cdd:TIGR00606  390 RQIKNFHTLVIERQEDEAktAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS 469
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   518 HDQI---------AGQKASKQELETELERLKQEFHYIEE---DLYRTKNTLQSRIK--------------------DRDE 565
Cdd:TIGR00606  470 SDRIleldqelrkAERELSKAEKNSLTETLKKEVKSLQNekaDLDRKLRKLDQEMEqlnhhtttrtqmemltkdkmDKDE 549
                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767982138   566 EIQKLRNQ-----------LTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLEQQ 625
Cdd:TIGR00606  550 QIRKIKSRhsdeltsllgyFPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQ 620
PRK09039 PRK09039
peptidoglycan -binding protein;
471-574 6.82e-03

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 39.18  E-value: 6.82e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 471 LRHEKEMQREEIQKLMGQIHQL-------RSELQDMEAQ------QVNEAESAREQLQDLHDQIAGQKASKQELETELER 537
Cdd:PRK09039  44 LSREISGKDSALDRLNSQIAELadllsleRQGNQDLQDSvanlraSLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123
                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 767982138 538 -LKQEFHYIEEDLyrtkntlqSRIKDRDEEIQKLRNQL 574
Cdd:PRK09039 124 eLDSEKQVSARAL--------AQVELLNQQIAALRRQL 153
sbcc TIGR00618
exonuclease SbcC; All proteins in this family for which functions are known are part of an ...
221-551 6.96e-03

exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 129705 [Multi-domain]  Cd Length: 1042  Bit Score: 39.95  E-value: 6.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   221 SHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEaVAAKDSQ 300
Cdd:TIGR00618  583 KEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLT-LTQERVR 661
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   301 LAVLKVRLQEAdQLLSTRTEALEALQSEKSRIMQDQSEgnslqnqaLQTFQERLHEADATLKREQESYKQMQSEFAARLN 380
Cdd:TIGR00618  662 EHALSIRVLPK-ELLASRQLALQKMQSEKEQLTYWKEM--------LAQCQTLLRELETHIEEYDREFNEIENASSSLGS 732
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   381 KVEMERQNLAEAITLAERKYSDEKKRVDELQQQVKLYKLNLESSKQELIDYKQKATRILQSKEKLINSLKEgsgfegldS 460
Cdd:TIGR00618  733 DLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKT--------L 804
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138   461 STASSMELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESAREQLQDLhDQIAGQKASKQELETELERLKQ 540
Cdd:TIGR00618  805 EAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQL-AQLTQEQAKIIQLSDKLNGINQ 883
                          330
                   ....*....|.
gi 767982138   541 EFHYIEEDLYR 551
Cdd:TIGR00618  884 IKIQFDGDALI 894
PRK11281 PRK11281
mechanosensitive channel MscK;
289-615 7.15e-03

mechanosensitive channel MscK;


Pssm-ID: 236892 [Multi-domain]  Cd Length: 1113  Bit Score: 39.89  E-value: 7.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  289 DLTEAVAAKDSQLAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSL---------QNQALQTFQERLHEADA 359
Cdd:PRK11281   70 ALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLSLrqlesrlaqTLDQLQNAQNDLAEYNS 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  360 TLKREQESYKQMQSEFAARLNKVEMERQNLAEAitlaerkySDEKKRVDELQQQvklyKLNLESSKQEL-IDYKQKAtri 438
Cdd:PRK11281  150 QLVSLQTQPERAQAALYANSQRLQQIRNLLKGG--------KVGGKALRPSQRV----LLQAEQALLNAqNDLQRKS--- 214
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  439 LQSKEKLINSLKEgsgfegldsstassmELEELRHEKEMQREEIQKLMGQIHQLR---SELQDMEAQQVNEAESARE--- 512
Cdd:PRK11281  215 LEGNTQLQDLLQK---------------QRDYLTARIQRLEHQLQLLQEAINSKRltlSEKTVQEAQSQDEAARIQAnpl 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  513 ---------QL-QDLHDQI-AGQKASKQELETE--LERLKQEFHYIEED-------------LYRTKNTLQS-------- 558
Cdd:PRK11281  280 vaqeleinlQLsQRLLKATeKLNTLTQQNLRVKnwLDRLTQSERNIKEQisvlkgslllsriLYQQQQALPSadliegla 359
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767982138  559 -RIKD-RDE--EIQKLRNQLTN-----KTLSNSSQSELENRLH-QLTETLIQKQTMLESLSTEKNSL 615
Cdd:PRK11281  360 dRIADlRLEqfEINQQRDALFQpdayiDKLEAGHKSEVTDEVRdALLQLLDERRELLDQLNKQLNNQ 426
PRK10929 PRK10929
putative mechanosensitive channel protein; Provisional
238-605 7.42e-03

putative mechanosensitive channel protein; Provisional


Pssm-ID: 236798 [Multi-domain]  Cd Length: 1109  Bit Score: 39.65  E-value: 7.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  238 VQSLNQEM----ASLLQRSKETQEELNKARArvekwnadhsKSDRMTrglraqvddlteavaakdsqlavlkvrlqeadQ 313
Cdd:PRK10929  104 TDALEQEIlqvsSQLLEKSRQAQQEQDRARE----------ISDSLS--------------------------------Q 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  314 LLSTRTEALEALqSEKSRIMQDQSEGNSLQNQAlqtfQERLHEADATLKReqesykqmqsefaARLNKVEME------RQ 387
Cdd:PRK10929  142 LPQQQTEARRQL-NEIERRLQTLGTPNTPLAQA----QLTALQAESAALK-------------ALVDELELAqlsannRQ 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  388 NLAeaitlaeRKYSD-EKKRVDELQQQVKLYKLNLESSKQelidykQKATRILQSKEKlinsLKEGSGfeGLDSSTASSM 466
Cdd:PRK10929  204 ELA-------RLRSElAKKRSQQLDAYLQALRNQLNSQRQ------REAERALESTEL----LAEQSG--DLPKSIVAQF 264
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  467 EL-EELRHEKEMQREEIQKLMGQIHQLRSELqdmeaQQVNEAESA-REQLQ----------DLHDQIA--GQKASKQELE 532
Cdd:PRK10929  265 KInRELSQALNQQAQRMDLIASQQRQAASQT-----LQVRQALNTlREQSQwlgvsnalgeALRAQVArlPEMPKPQQLD 339
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767982138  533 TELERLK-QEFHYieEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNKTLSNssQSELENRLHQLTETLIQKQTML 605
Cdd:PRK10929  340 TEMAQLRvQRLRY--EDLLNKQPQLRQIRQADGQPLTAEQNRILDAQLRT--QRELLNSLLSGGDTLILELTKL 409
PRK03918 PRK03918
DNA double-strand break repair ATPase Rad50;
467-623 8.19e-03

DNA double-strand break repair ATPase Rad50;


Pssm-ID: 235175 [Multi-domain]  Cd Length: 880  Bit Score: 39.66  E-value: 8.19e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 467 ELEELRHEKEMQREEIQKLMGQIHQLRSELQDMEAQQvNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIE 546
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELEKLEKEVKELEELK-EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELE 279
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767982138 547 EDLYRTKntlqsRIKDRDEEIQKLRNQLTNKTLSNSSQSELENRLHQLTETLIQKQTMLESLSTEKNSLVFQLERLE 623
Cdd:PRK03918 280 EKVKELK-----ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351
EnvC COG4942
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ...
501-600 8.30e-03

Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 443969 [Multi-domain]  Cd Length: 377  Bit Score: 38.98  E-value: 8.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 501 AQQVNEAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDLyrtkNTLQSRIKDRDEEIQKLRNQLTNKtls 580
Cdd:COG4942   16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRI----AALARRIRALEQELAALEAELAEL--- 88
                         90       100
                 ....*....|....*....|
gi 767982138 581 NSSQSELENRLHQLTETLIQ 600
Cdd:COG4942   89 EKEIAELRAELEAQKEELAE 108
CwlO1 COG3883
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ...
474-679 8.70e-03

Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];


Pssm-ID: 443091 [Multi-domain]  Cd Length: 379  Bit Score: 39.04  E-value: 8.70e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 474 EKEMQREEIQKLMGQIHQLRSELQDMEAQqvneAESAREQLQDLHDQIAGQKASKQELETELERLKQEFHYIEEDL---- 549
Cdd:COG3883   17 QIQAKQKELSELQAELEAAQAELDALQAE----LEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELgera 92
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 550 ---YRTKNTLQ---------------------SRIKDRD----EEIQKLRNQLTNKTLSNSS--------QSELENRLHQ 593
Cdd:COG3883   93 ralYRSGGSVSyldvllgsesfsdfldrlsalSKIADADadllEELKADKAELEAKKAELEAklaelealKAELEAAKAE 172
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 594 LTETLIQKQTMLESLSTEKNSLVFQLERLEQQMNSASGSSSNGSSINMSGIDNGEGTRLRNVPVLFNDTETNLAGMYGKV 673
Cdd:COG3883  173 LEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAGAGAA 252

                 ....*.
gi 767982138 674 RKAASS 679
Cdd:COG3883  253 GAAGAA 258
PRK12704 PRK12704
phosphodiesterase; Provisional
423-591 8.79e-03

phosphodiesterase; Provisional


Pssm-ID: 237177 [Multi-domain]  Cd Length: 520  Bit Score: 39.38  E-value: 8.79e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 423 SSKQELIDYKQKATRILQSKEKlinslkegsgfegldsstassmELEELRHEKEMQREEiqklmgQIHQLRSELQdmeaq 502
Cdd:PRK12704  28 IAEAKIKEAEEEAKRILEEAKK----------------------EAEAIKKEALLEAKE------EIHKLRNEFE----- 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138 503 qvNEAESAREQLQDLHDQIAGQKAS-KQELEtELERLKQEFHYIEEDLYRTKNTLQSRIKDRDEEIQKLRNQLTNktLSN 581
Cdd:PRK12704  75 --KELRERRNELQKLEKRLLQKEENlDRKLE-LLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELER--ISG 149
                        170
                 ....*....|
gi 767982138 582 SSQSELENRL 591
Cdd:PRK12704 150 LTAEEAKEIL 159
CALCOCO1 pfam07888
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ...
221-510 9.63e-03

Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.


Pssm-ID: 462303 [Multi-domain]  Cd Length: 488  Bit Score: 39.11  E-value: 9.63e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  221 SHELSNLRLENQLLRNEVQSLNQEMASLLQRSKETQEELNKARARVEKWNADHSKSDRMTRGLRAQVDDLTEAVAAKDSQ 300
Cdd:pfam07888 114 SEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKE 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  301 LAVLKVRLQEADQLLSTRTEALEALQSEKSRIMQDQSEGNSLQNQaLQTFQERLHEAD---ATLKREQESYKQMQSEFAA 377
Cdd:pfam07888 194 FQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEE-LRSLQERLNASErkvEGLGEELSSMAAQRDRTQA 272
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767982138  378 RLNKVEMERQN----LAEA-ITLAERKYSDEKKRvDELQQQVKLYKLNLESSKQELidykQKATRILQSKEKLINSLKEG 452
Cdd:pfam07888 273 ELHQARLQAAQltlqLADAsLALREGRARWAQER-ETLQQSAEADKDRIEKLSAEL----QRLEERLQEERMEREKLEVE 347
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767982138  453 SGFE---GLDSSTASSMELEELR-------HEKEMQREEIQKLMGQIHQLRSELQDMEAQQVNEAESA 510
Cdd:pfam07888 348 LGREkdcNRVQLSESRRELQELKaslrvaqKEKEQLQAEKQELLEYIRQLEQRLETVADAKWSEAALT 415
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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