|
Name |
Accession |
Description |
Interval |
E-value |
| Dzip-like_N |
pfam13815 |
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in ... |
52-172 |
1.01e-44 |
|
Iguana/Dzip1-like DAZ-interacting protein N-terminal; The DAZ gene-product - Deleted in Azoospermia - and a closely related sequence are required early in germ-cell development in order to maintain germ-cell populations. This family is the N-terminal region that is the only part of the protein in some fungi and lower metazoa.
Pssm-ID: 433498 [Multi-domain] Cd Length: 118 Bit Score: 152.09 E-value: 1.01e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 52 FKFQPRHDSMDWRRISTLDVDRVARELDVATLQENIAGITFCNLDREVCsrcGQPVDPALLKVLRLAQLIIEYLLHCQDC 131
Cdd:pfam13815 1 FQFRPRSERLDWRKLASVDVDRVARDTDVDTLQRNIENITFCNLTREEA---PHFVDPHFLKLFRLAQLTIEYLLHSQEC 77
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 767925981 132 LSASVAQLEARLQTSLGQQQRGQQELGRQADELKGVREESR 172
Cdd:pfam13815 78 LATILVKLEERLQEAQQRAEELEKELGRLEEELKKLKKESR 118
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
149-458 |
3.61e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 3.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 149 QQQRGQQELGRQADELKGVREESRRRRKMISTLQQLLMQTGTHsyhtchlcdktfmNATFLRGHIQRRHAGVAEGGKQKK 228
Cdd:PTZ00121 1480 EEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAK-------------KADEAKKAEEAKKADEAKKAEEKK 1546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 229 QEQPVEEVlEELRaklkwtqgELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKlfwDEFKN 308
Cdd:PTZ00121 1547 KADELKKA-EELK--------KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA---EEAKK 1614
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 309 VAKQNSTLEEklraLQSHSVMESKLGSLRDEESEEwLRQARELQALREKTEIQKTEWKRKVKElhEEHMAEKKELQEENQ 388
Cdd:PTZ00121 1615 AEEAKIKAEE----LKKAEEEKKKVEQLKKKEAEE-KKKAEELKKAEEENKIKAAEEAKKAEE--DKKKAEEAKKAEEDE 1687
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 389 RLQAslsqDQKKAAAQSQCQISTLRAQLQEQARiiasqeemiQSLSLRKVEGIHKVpKAVDTEEDSPEEE 458
Cdd:PTZ00121 1688 KKAA----EALKKEAEEAKKAEELKKKEAEEKK---------KAEELKKAEEENKI-KAEEAKKEAEEDK 1743
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
226-433 |
9.74e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 9.74e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 226 QKKQEQPVEEVLEELRAKLKWTQGELEAQrEAERQRQLQEAELIHQREIEAKKEFDKwKEQEWTKLYGEIDKLKKLFWDE 305
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAAL-KKEEKALLKQLAALERRIAALARRIRA-LEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 306 FKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELH------EEHMAE 379
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAalraelEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 767925981 380 KKELQEENQRLQASLSQ---DQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSL 433
Cdd:COG4942 176 LEALLAELEEERAALEAlkaERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
210-419 |
2.07e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.52 E-value: 2.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 210 RGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQE-----AELIHQREIEAKKEFDKWK 284
Cdd:PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEekkkvEQLKKKEAEEKKKAEELKK 1654
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 285 EQEWTKLYGEIDKLKKlfwDEFKNVAKQNSTLEEKLR----ALQSHSVMESKLGSLRDEESEEwLRQARELQALREKTEI 360
Cdd:PTZ00121 1655 AEEENKIKAAEEAKKA---EEDKKKAEEAKKAEEDEKkaaeALKKEAEEAKKAEELKKKEAEE-KKKAEELKKAEEENKI 1730
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 767925981 361 QKTEWKRKVKELHEEHMAEKKElQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQ 419
Cdd:PTZ00121 1731 KAEEAKKEAEEDKKKAEEAKKD-EEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEE 1788
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
214-428 |
2.08e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 2.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 214 QRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGElEAQREAERQRQLQEAELIHQREIEAKKEFDKwKEQEWTKLYG 293
Cdd:COG1196 253 AELEELEAELAELEAELEELRLELEELELELEEAQAE-EYELLAELARLEQDIARLEERRRELEERLEE-LEEELAELEE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 294 EIDKLKKLFWDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEwKRKVKELH 373
Cdd:COG1196 331 ELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ-LEELEEAE 409
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767925981 374 EEHMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEE 428
Cdd:COG1196 410 EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLEL 464
|
|
| PRK00409 |
PRK00409 |
recombination and DNA strand exchange inhibitor protein; Reviewed |
339-451 |
4.12e-06 |
|
recombination and DNA strand exchange inhibitor protein; Reviewed
Pssm-ID: 234750 [Multi-domain] Cd Length: 782 Bit Score: 49.44 E-value: 4.12e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 339 EESEEWLRQ-ARELQALREKTEIQKTEWKRKVKELHEEHMAEKKELQEE-NQRLQASlsqdqKKAAAQSqcqISTLRAQL 416
Cdd:PRK00409 526 EELERELEQkAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEaQQAIKEA-----KKEADEI---IKELRQLQ 597
|
90 100 110
....*....|....*....|....*....|....*....
gi 767925981 417 QEQARIIASQE--EMIQSL--SLRKVEGIHKVPKAVDTE 451
Cdd:PRK00409 598 KGGYASVKAHEliEARKRLnkANEKKEKKKKKQKEKQEE 636
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
110-458 |
4.20e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 4.20e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 110 ALLKVLRLAQLIIEYLLHCQDCLSASVAQLEARLQTSLGQQQRGQQELGRQADELKGVREESRRRRKMISTLQQLlmqtg 189
Cdd:COG1196 229 LLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQD----- 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 190 thsyhtchlcdktfmnatfLRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELI 269
Cdd:COG1196 304 -------------------IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 270 hQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLfwdefknvAKQNSTLEEKLRALQShsvmesklgslRDEESEEWLRQAR 349
Cdd:COG1196 365 -EALLEAEAELAEAEEELEELAEELLEALRAA--------AELAAQLEELEEAEEA-----------LLERLERLEEELE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 350 ELQALREKTEIQKTEWKRKVKELHEEHMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEM 429
Cdd:COG1196 425 ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYE 504
|
330 340 350
....*....|....*....|....*....|..
gi 767925981 430 IQS---LSLRKVEGIHKVPKAVDTEEDSPEEE 458
Cdd:COG1196 505 GFLegvKAALLLAGLRGLAGAVAVLIGVEAAY 536
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-434 |
6.55e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 6.55e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 225 KQKKQEQPVEEVLEELRAKLKWTQGeLEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWD 304
Cdd:TIGR02168 207 RQAEKAERYKELKAELRELELALLV-LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 305 ---EFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEHMAEKK 381
Cdd:TIGR02168 286 lqkELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEA 365
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 767925981 382 ELQEENQRLQAS--LSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLS 434
Cdd:TIGR02168 366 ELEELESRLEELeeQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
229-392 |
7.74e-06 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.32 E-value: 7.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 229 QEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEaeliHQREIEakkefdkwkeqewtKLYGEIDKLKklfwdefkn 308
Cdd:COG2433 374 RGLSIEEALEELIEKELPEEEPEAEREKEHEERELTE----EEEEIR--------------RLEEQVERLE--------- 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 309 vaKQNSTLEEKLRAL-QSHSVMESKLGSLRDEESEEwLRQARELQALREktEIQKTEwkrkvKELHEEHMaEKKELQEEN 387
Cdd:COG2433 427 --AEVEELEAELEEKdERIERLERELSEARSEERRE-IRKDREISRLDR--EIERLE-----RELEEERE-RIEELKRKL 495
|
....*
gi 767925981 388 QRLQA 392
Cdd:COG2433 496 ERLKE 500
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
169-421 |
8.19e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 48.20 E-value: 8.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 169 EESRRRRKMISTLQQLLMQTGTHS--YHTCHLCDKTFMNATFlrgHIQRRHAGVAEGGKQKKQEQPVEEVLEelraklkw 246
Cdd:pfam17380 234 EKMERRKESFNLAEDVTTMTPEYTvrYNGQTMTENEFLNQLL---HIVQHQKAVSERQQQEKFEKMEQERLR-------- 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 247 tQGELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKlfwdefKNVAKQNSTLEEKLRALQSH 326
Cdd:pfam17380 303 -QEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ------EERKRELERIRQEEIAMEIS 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 327 SVMESKLGSLRDEESEEWLRQarELQALReKTEIQKTEWKRKVKELHEEHMAEKKELQEENQRLQASLSQDQ-------K 399
Cdd:pfam17380 376 RMRELERLQMERQQKNERVRQ--ELEAAR-KVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERaremervR 452
|
250 260
....*....|....*....|..
gi 767925981 400 KAAAQSQCQISTLRAQLQEQAR 421
Cdd:pfam17380 453 LEEQERQQQVERLRQQEEERKR 474
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
227-436 |
1.82e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.82e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 227 KKQEQPVEEVLEELRAKLKWTQGELEAQRE--AERQRQLQEAEL-IHQREIEAKKEFDKWKEQEWTKLYGEIDKLKklfw 303
Cdd:TIGR02169 729 EQEEEKLKERLEELEEDLSSLEQEIENVKSelKELEARIEELEEdLHKLEEALNDLEARLSHSRIPEIQAELSKLE---- 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 304 defknvaKQNSTLEEKLRALqshsvmESKLGSL-RDEESEEWLRQarELQALREKTEIQKTEWKRKVKELHeehmAEKKE 382
Cdd:TIGR02169 805 -------EEVSRIEARLREI------EQKLNRLtLEKEYLEKEIQ--ELQEQRIDLKEQIKSIEKEIENLN----GKKEE 865
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767925981 383 LQEENQRLQASLSQDQKKAAAQSQcQISTLRAQLQEQARIIASQEEMIQSLSLR 436
Cdd:TIGR02169 866 LEEELEELEAALRDLESRLGDLKK-ERDELEAQLRELERKIEELEAQIEKKRKR 918
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
221-458 |
1.95e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 47.44 E-value: 1.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 221 AEGGKQKKQEQpvEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREiEAKKEFDKWKEQEWTKLYGEIDKLKK 300
Cdd:PTZ00121 1331 ADAAKKKAEEA--KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD-AAKKKAEEKKKADEAKKKAEEDKKKA 1407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 301 lfwDEFKNVAkqnstlEEKLRALQSHSVMESKLGSLRDEESEEWLRQAREL----------QALREKTE--------IQK 362
Cdd:PTZ00121 1408 ---DELKKAA------AAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAkkkaeeakkaEEAKKKAEeakkadeaKKK 1478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 363 TEWKRKVKELHEEHMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVEGIH 442
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
|
250
....*....|....*.
gi 767925981 443 KVPKAVDTEEDSPEEE 458
Cdd:PTZ00121 1559 KAEEKKKAEEAKKAEE 1574
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
221-458 |
4.07e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 4.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 221 AEGGKQKKQEQpveEVLEELRAKLKWTQGELEAQREAERQRQLQE----AELIHQREIEAKKEFDKWKEQEWTKLYGEID 296
Cdd:PTZ00121 1446 ADEAKKKAEEA---KKAEEAKKKAEEAKKADEAKKKAEEAKKADEakkkAEEAKKKADEAKKAAEAKKKADEAKKAEEAK 1522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 297 KLKKLFWDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEH 376
Cdd:PTZ00121 1523 KADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 377 MAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARiiasqeemiQSLSLRKVEGIHKVPKAvdtEEDSPE 456
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK---------KAEELKKAEEENKIKAA---EEAKKA 1670
|
..
gi 767925981 457 EE 458
Cdd:PTZ00121 1671 EE 1672
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
233-439 |
8.96e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.93 E-value: 8.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 233 VEEVLEELRAKLKwtqgELEAQRE-AERQRQLQEAEliHQREIEAKKEFDKWKEQEWTKLYGEIDKLKklfwDEFKNVAK 311
Cdd:COG1196 191 LEDILGELERQLE----PLERQAEkAERYRELKEEL--KELEAELLLLKLRELEAELEELEAELEELE----AELEELEA 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 312 QNSTLEEKLRALqshsvmESKLGSLRDEESEewlRQARELQALREKTEIQKtewkrkvkelheEHMAEKKELQEENQRLQ 391
Cdd:COG1196 261 ELAELEAELEEL------RLELEELELELEE---AQAEEYELLAELARLEQ------------DIARLEERRRELEERLE 319
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 767925981 392 ASLSQDQKKAAAQSQC--QISTLRAQLQEQARIIASQEEMIQSLSLRKVE 439
Cdd:COG1196 320 ELEEELAELEEELEELeeELEELEEELEEAEEELEEAEAELAEAEEALLE 369
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
234-458 |
8.97e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 8.97e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 234 EEVLEELRAKLKWTQGELEAQREAERQRQLQEAelihqREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDEFKNVAKQN 313
Cdd:PTZ00121 1101 EEAKKTETGKAEEARKAEEAKKKAEDARKAEEA-----RKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDA 1175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 314 STLEEKLRALQSHSVMEsklgsLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEHMAEKKELQE---ENQRL 390
Cdd:PTZ00121 1176 KKAEAARKAEEVRKAEE-----LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAkkaEEERN 1250
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767925981 391 QASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVEGIHKVPKAVDTEEDSPEEE 458
Cdd:PTZ00121 1251 NEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
201-437 |
1.73e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 1.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 201 KTFMNATFLRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREIEAKKEF 280
Cdd:TIGR00618 226 KELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQI 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 281 DKWKEQEWTKLYGEIDKLKKLFwDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEES---EEWLRQARELQALREK 357
Cdd:TIGR00618 306 EQQAQRIHTELQSKMRSRAKLL-MKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATsirEISCQQHTLTQHIHTL 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 358 TEiQKTEWKRKVKELHEEHMAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRK 437
Cdd:TIGR00618 385 QQ-QKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQE 463
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
209-429 |
3.34e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 3.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 209 LRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQ-- 286
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLke 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 287 EWTKLYGEIDKLKKlfwdEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWK 366
Cdd:TIGR02168 797 ELKALREALDELRA----ELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE 872
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 367 RKVKEL------HEEHMAEKK-----------ELQEENQRLQASLSQDQKKaAAQSQCQISTLRAQLQEQARIIASQEEM 429
Cdd:TIGR02168 873 SELEALlnerasLEEALALLRseleelseelrELESKRSELRRELEELREK-LAQLELRLEGLEVRIDNLQERLSEEYSL 951
|
|
| MPS2 |
pfam17060 |
Monopolar spindle protein 2; Is a fungal transmembrane protein which is part of the component ... |
311-431 |
3.84e-04 |
|
Monopolar spindle protein 2; Is a fungal transmembrane protein which is part of the component of the spindle pole body (SPB) required for the insertion of the nascent SPB into the nuclear envelope and for the proper execution of spindle pole body (SPB) duplication. It seems that Mps2-Spc24 interaction may contribute to the localization of Spc24 and other kinetochore components to the inner plaque of the SPB.
Pssm-ID: 407228 [Multi-domain] Cd Length: 340 Bit Score: 42.66 E-value: 3.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 311 KQNSTLEEKLRALQSHSVMESKLGSLRDEES--EEWLRQA-RELQALRekteiqktewkRKVKELHEEHMAEKKELQEEN 387
Cdd:pfam17060 134 KPQESPETPRRINRKYKSLELRVESMKDELEfkDETIMEKdRELTELT-----------STISKLKDKYDFLSREFEFYK 202
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 767925981 388 QRlQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQ 431
Cdd:pfam17060 203 QH-HEHGGNNSIKTATKHEFIISELKRKLQEQNRLIRILQEQIQ 245
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
227-434 |
4.18e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.12 E-value: 4.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 227 KKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQRE-IEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDE 305
Cdd:TIGR02168 280 EEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEeLESKLDELAEELAELEEKLEELKEELESLEAE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 306 FKNVAKQNSTLEEKLRALQSH---------------SVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVK 370
Cdd:TIGR02168 360 LEELEAELEELESRLEELEEQletlrskvaqlelqiASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQ 439
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767925981 371 ELHEEHMAEKKELQEENQRLQASLSQdQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLS 434
Cdd:TIGR02168 440 AELEELEEELEELQEELERLEEALEE-LREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
242-429 |
5.14e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 42.46 E-value: 5.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 242 AKLKWTQGELEAQREAERQrqLQEAElihqREIEAKKefdKWKEQEWTKlygEIDKLKKLFWDEFKNVAKQNSTLEEKLr 321
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRI--LEEAK----KEAEAIK---KEALLEAKE---EIHKLRNEFEKELRERRNELQKLEKRL- 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 322 aLQSHSVMESKLGSLRDEEseewlrqaRELQALREKTEIQKTEWKRKVKELHEEHMAEKKELQEenqrlQASLSQDQKKa 401
Cdd:PRK12704 92 -LQKEENLDRKLELLEKRE--------EELEKKEKELEQKQQELEKKEEELEELIEEQLQELER-----ISGLTAEEAK- 156
|
170 180
....*....|....*....|....*...
gi 767925981 402 aaqsQCQISTLRAQLQEQARIIASQEEM 429
Cdd:PRK12704 157 ----EILLEKVEEEARHEAAVLIKEIEE 180
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
132-300 |
5.52e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 132 LSASVAQLEARLQTSLGQQQRGQQELGRQADELKGVREESRRRRKMISTLQQLLMQTGTHSYHTCHL----CDKTFMNAT 207
Cdd:COG4942 60 LERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLspedFLDAVRRLQ 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 208 FLRGHIQRRHAGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELI--HQREIEAKKEFDKWKE 285
Cdd:COG4942 140 YLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLarLEKELAELAAELAELQ 219
|
170
....*....|....*
gi 767925981 286 QEWTKLYGEIDKLKK 300
Cdd:COG4942 220 QEAEELEALIARLEA 234
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
229-439 |
6.28e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 6.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 229 QEQPVEEVLEELRAKLKWTQGELEAQREaerqrQLQEAElihqreieakKEFDKWKEQewtklYGEIDklkklFWDEFKN 308
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRK-----ELEEAE----------AALEEFRQK-----NGLVD-----LSEEAKL 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 309 VAKQNSTLEEKLRALQS-HSVMESKLGSLRDEESEEW-----LRQARELQALREK---TEIQKTEWKRKVKELHEEHmae 379
Cdd:COG3206 217 LLQQLSELESQLAEARAeLAEAEARLAALRAQLGSGPdalpeLLQSPVIQQLRAQlaeLEAELAELSARYTPNHPDV--- 293
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 380 kKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVE 439
Cdd:COG3206 294 -IALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE 352
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
225-402 |
7.22e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 7.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 225 KQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELI-HQREIEAK-KEFDKWKEQEwtKLYGEIDKLKKLF 302
Cdd:PRK03918 228 KEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKkEIEELEEKvKELKELKEKA--EEYIKLSEFYEEY 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 303 WDEFKNVAKQNSTLEEKLRALQSH----SVMESKLGSLRDEESE---------EWLRQARELQALREKTEIQKTEWK--- 366
Cdd:PRK03918 306 LDELREIEKRLSRLEEEINGIEERikelEEKEERLEELKKKLKElekrleeleERHELYEEAKAKKEELERLKKRLTglt 385
|
170 180 190
....*....|....*....|....*....|....*..
gi 767925981 367 -RKVKELHEEHMAEKKELQEENQRLQASLSQDQKKAA 402
Cdd:PRK03918 386 pEKLEKELEELEKAKEEIEEEISKITARIGELKKEIK 422
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
234-447 |
1.17e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 1.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 234 EEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREiEAKKEFDKwKEQEWTKLYGEIDKL---KKLFWDEFKNVA 310
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS-ELEEEIEE-LQKELYALANEISRLeqqKQILRERLANLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 311 KQNSTLEEKLRALQSHSV--------MESKLGSLR---DEESEEWLRQARELQALREKTEIQKTEW---KRKVKELHEEH 376
Cdd:TIGR02168 316 RQLEELEAQLEELESKLDelaeelaeLEEKLEELKeelESLEAELEELEAELEELESRLEELEEQLetlRSKVAQLELQI 395
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767925981 377 MAEKKELQEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVEGIHKVPKA 447
Cdd:TIGR02168 396 ASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEEL 466
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
226-421 |
1.43e-03 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 41.09 E-value: 1.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 226 QKKQEQPVEEVLEELRAKLKWTQGElEAQREAERQRQLQeaelihQREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDE 305
Cdd:pfam15709 327 KREQEKASRDRLRAERAEMRRLEVE-RKRREQEEQRRLQ------QEQLERAEKMREELELEQQRRFEEIRLRKQRLEEE 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 306 fknvaKQNSTLEEKLRALQSHSVMESKlgslrDEESEEWLRQARELQALREKTEIQKTEW-KRKVKELHEEHMAEKKEL- 383
Cdd:pfam15709 400 -----RQRQEEEERKQRLQLQAAQERA-----RQQQEEFRRKLQELQRKKQQEEAERAEAeKQRQKELEMQLAEEQKRLm 469
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 767925981 384 --------------QEENQRLQASLSQDQKKAAAQSQCQISTLRAQLQEQAR 421
Cdd:pfam15709 470 emaeeerleyqrqkQEAEEKARLEAEERRQKEEEAARLALEEAMKQAQEQAR 521
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
225-389 |
1.50e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 225 KQKKQEQPVEEVLEELRAKlkwtqgELEAQREAERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKlygEIDKLKKLFWD 304
Cdd:pfam17380 428 EQEEARQREVRRLEEERAR------EMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRK---RAEEQRRKILE 498
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 305 EFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQK-----TEWKRKVKELHEEHMAE 379
Cdd:pfam17380 499 KELEERKQAMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEqmrkaTEERSRLEAMEREREMM 578
|
170
....*....|
gi 767925981 380 KKELQEENQR 389
Cdd:pfam17380 579 RQIVESEKAR 588
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
221-458 |
1.60e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 41.28 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 221 AEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQ-REIEAKKEFDKWKEQEWTKLYGE---ID 296
Cdd:PTZ00121 1148 AEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDaRKAEAARKAEEERKAEEARKAEDakkAE 1227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 297 KLKKLfwDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEH 376
Cdd:PTZ00121 1228 AVKKA--EEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKAD 1305
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 377 MAEKK-ELQEENQRLQASLSQDQKKAAAQSQcqistlRAQLQEQARIIASQEEMIQSLSLRKVEGIHKVPKAVDTEEDSP 455
Cdd:PTZ00121 1306 EAKKKaEEAKKADEAKKKAEEAKKKADAAKK------KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKK 1379
|
...
gi 767925981 456 EEE 458
Cdd:PTZ00121 1380 ADA 1382
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
225-400 |
1.61e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 41.16 E-value: 1.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 225 KQKKQEQpVEEVLEELRAKLKWTQGELEAQREAERQRQLQEAELIHQREIEAKKEFD-KWKEQEWTKLYGEIDKLKKLFW 303
Cdd:TIGR04523 358 NSEKQRE-LEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQiKKLQQEKELLEKEIERLKETII 436
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 304 D---EFKNVAKQNSTLEEKLRalqshsvmesKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELhEEHMAEK 380
Cdd:TIGR04523 437 KnnsEIKDLTNQDSVKELIIK----------NLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKEL-KKLNEEK 505
|
170 180
....*....|....*....|...
gi 767925981 381 KELQEENQRL---QASLSQDQKK 400
Cdd:TIGR04523 506 KELEEKVKDLtkkISSLKEKIEK 528
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
228-458 |
1.94e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 40.79 E-value: 1.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 228 KQEQPVEEVLEELRAKLKWTQGELEAQRE-----AERQRQLQEAELIHQREIEAKKEFDKWKEQEWTKLYGEIDKLKKlf 302
Cdd:PRK02224 321 DRDEELRDRLEECRVAAQAHNEEAESLREdaddlEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE-- 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 303 wdEFKNVAKQNSTLEEKLRALQS-HSVMESKLGSLRD--EESEEWLRQAREL----------QALREKTEIQKTEWKRKV 369
Cdd:PRK02224 399 --RFGDAPVDLGNAEDFLEELREeRDELREREAELEAtlRTARERVEEAEALleagkcpecgQPVEGSPHVETIEEDRER 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 370 KELHEEHMAEKKELQEE-NQRLqaslsqDQKKAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRkVEGIHKVPKAV 448
Cdd:PRK02224 477 VEELEAELEDLEEEVEEvEERL------ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRER-AEELRERAAEL 549
|
250
....*....|
gi 767925981 449 DTEEDSPEEE 458
Cdd:PRK02224 550 EAEAEEKREA 559
|
|
| Spc7 |
smart00787 |
Spc7 kinetochore protein; This domain is found in cell division proteins which are required ... |
273-424 |
2.41e-03 |
|
Spc7 kinetochore protein; This domain is found in cell division proteins which are required for kinetochore-spindle association.
Pssm-ID: 197874 [Multi-domain] Cd Length: 312 Bit Score: 40.00 E-value: 2.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 273 EIEAKKEFDKWKEQEWTKLYGEIDKLKKLFWDEFKNVAKQNSTLEEKLRALQ-SHSVMESKLGSLRDEESEEWLRQAREL 351
Cdd:smart00787 127 RLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRdRKDALEEELRQLKQLEDELEDCDPTEL 206
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767925981 352 QALREKteiqktewkrkVKELHEEHMAEKKELQEENQRLQASLSQDQKKAAaqsqcQISTLRAQLQEQARIIA 424
Cdd:smart00787 207 DRAKEK-----------LKKLLQEIMIKVKKLEELEEELQELESKIEDLTN-----KKSELNTEIAEAEKKLE 263
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
210-429 |
4.17e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 39.74 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 210 RGHIQRRhagvAEGGKQKKQEQPVEEV--LEELRAKLKWTQGE----LEAQREAERQRQLQEAELIH--QREIEAKKEFD 281
Cdd:PTZ00121 1165 KAEEARK----AEDAKKAEAARKAEEVrkAEELRKAEDARKAEaarkAEEERKAEEARKAEDAKKAEavKKAEEAKKDAE 1240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 282 KWKEQEWTKLYGEIDKLKKLFWDEF-----------KNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEwLRQARE 350
Cdd:PTZ00121 1241 EAKKAEEERNNEEIRKFEEARMAHFarrqaaikaeeARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE-AKKADE 1319
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767925981 351 LQALREKTEIQKTEWKRKVKELHEEHMAEKKELQEENQRLQASlsQDQKKAAAQSQCQISTLRAQLQEQARIIASQEEM 429
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA--EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
218-439 |
5.48e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 5.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 218 AGVAEGGKQKKQEQPVEEVLEELRAKLKWTQGELEAQREAErqrqlqeaelihqrEIEAKKEFDKWKEQEWTKLYgeidK 297
Cdd:pfam02463 162 AAGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKL--------------KEQAKKALEYYQLKEKLELE----E 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 298 LKKLFWDEFKNVAKQNSTLEEKLRALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEIQKTEWKRKVKELHEEHM 377
Cdd:pfam02463 224 EYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 303
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767925981 378 AEKKELQEENQRLQASLSQDQK--KAAAQSQCQISTLRAQLQEQARIIASQEEMIQSLSLRKVE 439
Cdd:pfam02463 304 KLERRKVDDEEKLKESEKEKKKaeKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEK 367
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
235-400 |
6.05e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.28 E-value: 6.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 235 EVLEELRAKLKWTQGELEAQREAERQRQLQEAELIH-QREIEAKKEFDKWKEQEWTKLYGEIDKLKKLFwDEFKNVAKQN 313
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEvLREINEISSELPELREELEKLEKEVKELEELK-EEIEELEKEL 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 314 STLEEKLRALqshsvmESKLGSLRD------EESEEWLRQARELQALREKTEIQktewkRKVKELHEEHMAEKKELQEEN 387
Cdd:PRK03918 248 ESLEGSKRKL------EEKIRELEErieelkKEIEELEEKVKELKELKEKAEEY-----IKLSEFYEEYLDELREIEKRL 316
|
170
....*....|...
gi 767925981 388 QRLQASLSQDQKK 400
Cdd:PRK03918 317 SRLEEEINGIEER 329
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
233-439 |
7.49e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 38.90 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 233 VEEVLEELRAKLKWTQGELEAqREAERQRQLQEAELIhQREIEAKKEFDKWKEQEWTKLYGEIDKLkklfwdefknvAKQ 312
Cdd:TIGR02169 700 IENRLDELSQELSDASRKIGE-IEKEIEQLEQEEEKL-KERLEELEEDLSSLEQEIENVKSELKEL-----------EAR 766
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 313 NSTLEEKLRALQshsvmeSKLGSLRDEESEEWLRQ----ARELQALREKTEIQKTEWKRKVKELHEEHMAEKKELQEENQ 388
Cdd:TIGR02169 767 IEELEEDLHKLE------EALNDLEARLSHSRIPEiqaeLSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 767925981 389 RLQAslSQDQKKAAAQsqcQISTLRAQLQEQARIIASQEEMIQSLSLRKVE 439
Cdd:TIGR02169 841 QRID--LKEQIKSIEK---EIENLNGKKEELEEELEELEAALRDLESRLGD 886
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
162-392 |
7.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 38.74 E-value: 7.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 162 DELKGVREESRRRRKMISTLQQLLMQTGTHsyhtchlcDKTFMNATFLRghiQRRHAGVAEGGKQKKQEqpVEEVLEELR 241
Cdd:COG4913 235 DDLERAHEALEDAREQIELLEPIRELAERY--------AAARERLAELE---YLRAALRLWFAQRRLEL--LEAELEELR 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 242 AKLKWTQGELEAQREAERQRQLQEAELIHQReieakkefdkwkeqeWTKLYGEIDKLKKLfwdefknVAKQNSTLEEKLR 321
Cdd:COG4913 302 AELARLEAELERLEARLDALREELDELEAQI---------------RGNGGDRLEQLERE-------IERLERELEERER 359
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767925981 322 ALQSHSVMESKLGSLRDEESEEWLRQARELQALREKTEiqktEWKRKVKELHEEHMAEKKELQEENQRLQA 392
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEFAALRAEAAALLEALE----EELEALEEALAEAEAALRDLRRELRELEA 426
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
225-440 |
8.49e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.21 E-value: 8.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 225 KQKKQEQPVEEVLEELRAKLKWTQGELeaqREAERQRQLQEAEL--IHQREIEAKKEFDKWKEQEWTKLY-----GEIDK 297
Cdd:COG4942 45 ALKKEEKALLKQLAALERRIAALARRI---RALEQELAALEAELaeLEKEIAELRAELEAQKEELAELLRalyrlGRQPP 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767925981 298 LKKLF-WDEFKNVAKQNSTLEEKLRALQShsvmesKLGSLRdEESEEWLRQARELQALREKTEIQKTEWKRKVKELheeh 376
Cdd:COG4942 122 LALLLsPEDFLDAVRRLQYLKYLAPARRE------QAEELR-ADLAELAALRAELEAERAELEALLAELEEERAAL---- 190
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767925981 377 MAEKKELQEENQRLQASLSQDQKKAAAQSQcQISTLRAQLQEQARIIASQEEMIQSLSLRKVEG 440
Cdd:COG4942 191 EALKAERQKLLARLEKELAELAAELAELQQ-EAEELEALIARLEAEAAAAAERTPAAGFAALKG 253
|
|
| |
