|
Name |
Accession |
Description |
Interval |
E-value |
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
63-799 |
1.48e-30 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 130.20 E-value: 1.48e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 63 LERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFI-QCQLIEGQLQDADQQLEFLNEIQQsi 141
Cdd:TIGR02917 79 LRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQALAIDP-- 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 142 gKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQY-FEKLNPDFLLEIVMEYLSFCPMQPAspgqpl 220
Cdd:TIGR02917 157 -RSLYAKLGLAQLALAEN-RFDEARALIDEVLTADPGNVDALLLKGDLlLSLGNIELALAAYRKAIALRPNNIA------ 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 221 cPLLRRCISVL------------ETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLS 288
Cdd:TIGR02917 229 -VLLALATILIeagefeeaekhaDALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 289 QEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAmslpgmkrigastkskDRKTEVDTSHRLS 368
Cdd:TIGR02917 308 LGNLEQAYQYLNQILKYA---PNSHQARRLLASIQLRLGRVDEAIATLSPA----------------LGLDPDDPAALSL 368
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 369 IFLELIDvhrlNGEQHEATKVLQDAihefsgTSEEVRVTIANADLA---LAQGDIERALSILQNVTAEQPYFIEAREKMA 445
Cdd:TIGR02917 369 LGEAYLA----LGDFEKAAEYLAKA------TELDPENAAARTQLGiskLSQGDPSEAIADLETAAQLDPELGRADLLLI 438
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 446 DIYLK-HRKDKMLYITcfREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYS 523
Cdd:TIGR02917 439 LSYLRsGQFDKALAAA--KKLEKKQpDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD 516
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 524 MAITYYEAALKTGQKNY-LCYDLAELLLK-------LKWYDKA--------EKVLQHALAHEPVNELS---ALMED---- 580
Cdd:TIGR02917 517 DAIQRFEKVLTIDPKNLrAILALAGLYLRtgneeeaVAWLEKAaelnpqeiEPALALAQYYLGKGQLKkalAILNEaada 596
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 581 -----------GRCQ---------------------------VLLAKVYSKMEKLGDAITALQQARELQA--RVLKRVQM 620
Cdd:TIGR02917 597 apdspeawlmlGRAQlaagdlnkavssfkkllalqpdsalalLLLADAYAVMKNYAKAITSLKRALELKPdnTEAQIGLA 676
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 621 ------EQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLeLARLYLAQDDPDSC 687
Cdd:TIGR02917 677 qlllaaKRTESakkiaksLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIK-LHRALLASGNTAEA 755
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 688 LRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLrrcGKLEDvPRFFSMAEKRNS 767
Cdd:TIGR02917 756 VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLY---LELKD-PRALEYAERALK 831
|
810 820 830
....*....|....*....|....*....|..
gi 767919830 768 RAKLEPGFQYCKGLYLWYTGEPNDALRHFNKA 799
Cdd:TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
474-766 |
7.86e-26 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 108.28 E-value: 7.86e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 474 SFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKL 552
Cdd:COG2956 10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLErDPDRAEALLELAQDYLKA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 553 KWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARvlkrvqmeqpdavpaqkhl 632
Cdd:COG2956 90 GLLDRAEELLEKLLELDP--------DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE------------------- 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 633 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 712
Cdd:COG2956 143 NAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELY 222
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 767919830 713 FRKQDYEQAVFHLQQLLERKPDNYMTLsRLIDLLRRCGKLEDVPRFFSMAEKRN 766
Cdd:COG2956 223 EKLGDPEEALELLRKALELDPSDDLLL-ALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
249-1053 |
1.28e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 91.68 E-value: 1.28e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 249 AKVKYLS-GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLElclsydfkvrdyplyhliKAQSQKkmg 327
Cdd:TIGR02917 28 AAKSYLQkNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELR------------------KALSLG--- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 328 eiadaiktLHMAMSLPGMKRIGASTKSKDR------KTEVDTSHRLSIFLELI-DVHRLNGEQHEATKVLQDAIhEFSGT 400
Cdd:TIGR02917 87 --------YPKNQVLPLLARAYLLQGKFQQvldelpGKTLLDDEGAAELLALRgLAYLGLGQLELAQKSYEQAL-AIDPR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 401 SEEVRvtIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADiYLKHRKDKMLYITCFREIAE-RMANPRSFLLLG 479
Cdd:TIGR02917 158 SLYAK--LGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD-LLLSLGNIELALAAYRKAIAlRPNNIAVLLALA 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 480 DAYMNILEPEEAIVAYEQALNQNPKdgTLASKMGKALI--KTHNYSMAITYYEAALKTGQKNYLCYDLAEL-LLKLKWYD 556
Cdd:TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPN--SPLAHYLKALVdfQKKNYEDARETLQDALKSAPEYLPALLLAGAsEYQLGNLE 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 557 KAEKVLQHALAHEPVNELSALMedgrcqvlLAKVYSKMEKLGDAITALQQARELQAR------VLKRVQMEQPDAVPAQK 630
Cdd:TIGR02917 313 QAYQYLNQILKYAPNSHQARRL--------LASIQLRLGRVDEAIATLSPALGLDPDdpaalsLLGEAYLALGDFEKAAE 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 631 HL--AAEICAEIAKHS-------VAQRDYEKAIKFYREALvhcETDNKIM---LELARLYLAQDDPDSCLRQCALLLQSD 698
Cdd:TIGR02917 385 YLakATELDPENAAARtqlgiskLSQGDPSEAIADLETAA---QLDPELGradLLLILSYLRSGQFDKALAAAKKLEKKQ 461
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 699 QDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNsrAKLEPGFQYC 778
Cdd:TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID--PKNLRAILAL 539
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 779 KGLYLwYTGEPNDALRHFNKARKdrdwgqnalynmieicLNPDNEtvggevfeNLDGDLGNSTEKQESVQLAVRTAEKLL 858
Cdd:TIGR02917 540 AGLYL-RTGNEEEAVAWLEKAAE----------------LNPQEI--------EPALALAQYYLGKGQLKKALAILNEAA 594
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 859 KeLKPQTVQGHVQLrimenycLMATKQKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRiaKMNW 938
Cdd:TIGR02917 595 D-AAPDSPEAWLML-------GRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKR--ALEL 664
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 939 NaidaEEFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYSNRTNPAV 1018
Cdd:TIGR02917 665 K----PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAI 740
|
810 820 830
....*....|....*....|....*....|....*
gi 767919830 1019 gyKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIR 1053
Cdd:TIGR02917 741 --KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
253-569 |
1.30e-17 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 84.40 E-value: 1.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 253 YLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADA 332
Cdd:COG2956 19 LLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERD---PDRAEALLELAQDYLKAGLLDRA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 333 IKTLHMAMSLPgmkrigastkskdrktevdtSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEfsgTSEEVRVTIANAD 412
Cdd:COG2956 96 EELLEKLLELD--------------------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL---GPENAHAYCELAE 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 413 LALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKdkmlyitcfreiaermanprsflllgdaymnilePEEAI 492
Cdd:COG2956 153 LYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD----------------------------------YEEAI 198
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830 493 VAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHE 569
Cdd:COG2956 199 AALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
254-967 |
6.36e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 86.29 E-value: 6.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 254 LSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDFKVRDyplYHLIKAQSQKKMGEIADAI 333
Cdd:TIGR02917 137 GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVD---ALLLKGDLLLSLGNIELAL 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 334 KTLHMAMSL-PG--MKRIGAST----KSKDRKTEVDTSHRLSIFLELIDVHRLNGEQHEATKVLQDAIHEF-----SGTS 401
Cdd:TIGR02917 214 AAYRKAIALrPNniAVLLALATilieAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLqdalkSAPE 293
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 402 EEVRVTIANAdLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREIAERMANPRSFLLLGDA 481
Cdd:TIGR02917 294 YLPALLLAGA-SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEA 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 482 YMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKtgqknyLCYDL--AELLL-----KLKW 554
Cdd:TIGR02917 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQ------LDPELgrADLLLilsylRSGQ 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 555 YDKAEKVLQHALAHEPVNELSalmedgrcQVLLAKVYSKMEKLGDAITALQQARELqarvlkrvqmeQPDAVPAQkhlaa 634
Cdd:TIGR02917 447 FDKALAAAKKLEKKQPDNASL--------HNLLGAIYLGKGDLAKAREAFEKALSI-----------EPDFFPAA----- 502
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 635 eicAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFR 714
Cdd:TIGR02917 503 ---ANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLG 579
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 715 KQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSraklepgfqyckglylwYTGEPNDALR 794
Cdd:TIGR02917 580 KGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-----------------DSALALLLLA 642
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 795 HFNKARKDRDWGQNALYNMIEIclNPDNetvggEVFENLDGDLGNSTEKQESvqlavrtAEKLLKELKPQTVQGHVQLRI 874
Cdd:TIGR02917 643 DAYAVMKNYAKAITSLKRALEL--KPDN-----TEAQIGLAQLLLAAKRTES-------AKKIAKSLQKQHPKAALGFEL 708
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 875 mENYCLMATKQKSNVEQALNTFTEIAASEKehipALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAEefekswLLLA 954
Cdd:TIGR02917 709 -EGDLYLRQKDYPAAIQAYRKALKRAPSSQ----NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR------TALA 777
|
730
....*....|...
gi 767919830 955 DIYIQSAKYDMAE 967
Cdd:TIGR02917 778 ELYLAQKDYDKAI 790
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
672-1004 |
3.10e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 80.16 E-value: 3.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 672 LELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRcgk 751
Cdd:COG2956 12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK--- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 752 ledvprffsmaekrnsraklepgfqyckglylwyTGEPNDALRHFNKARKDRDWGQNALYNMIEIClnpdnetvggevfe 831
Cdd:COG2956 89 ----------------------------------AGLLDRAEELLEKLLELDPDDAEALRLLAEIY-------------- 120
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 832 nldgdlgnstEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLRimenyclMATKQKSNVEQALNTFTEIAASEKEHIPALL 911
Cdd:COG2956 121 ----------EQEGDWEKAIEVLERLLK-LGPENAHAYCELA-------ELYLEQGDYDEAIEALEKALKLDPDCARALL 182
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 912 GMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIM 991
Cdd:COG2956 183 LLAELYLEQGDYEEAIAALERALEQDPDYLPA------LPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLE 256
|
330
....*....|...
gi 767919830 992 EKEQAytDAALNY 1004
Cdd:COG2956 257 RKEGL--EAALAL 267
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
31-705 |
5.19e-16 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 83.21 E-value: 5.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 31 EPQNAQLFYNITLAFSRTCGRSQLILQKIQ----------TLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTA 100
Cdd:TIGR02917 140 QLELAQKSYEQALAIDPRSLYAKLGLAQLAlaenrfdearALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKA 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 101 MTLDETSVSALVGFIQCQLIEGQLQDADQQLEflnEIQQSIGKSAELIYLHAVLAMKKnKRQEEVINLLNDVLDTHFSQL 180
Cdd:TIGR02917 220 IALRPNNIAVLLALATILIEAGEFEEAEKHAD---ALLKKAPNSPLAHYLKALVDFQK-KNYEDARETLQDALKSAPEYL 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 181 EGLPL-GIQYFEKLNPDFLLEIVMEYLSFCPMQPASPGQPLCPLLR--------RCISVLETVVRTVPGLL--------- 242
Cdd:TIGR02917 296 PALLLaGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRlgrvdeaiATLSPALGLDPDDPAALsllgeayla 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 243 -----QTVFLIAKVKYLS-----------------GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLE 300
Cdd:TIGR02917 376 lgdfeKAAEYLAKATELDpenaaartqlgisklsqGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAK 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 301 lclSYDFKVRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL-PG-------MKRIGASTK----SKDRKTEVDTS--HR 366
Cdd:TIGR02917 456 ---KLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIePDffpaaanLARIDIQEGnpddAIQRFEKVLTIdpKN 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 367 LSIFLELIDVHRLNGEQHEATKVLQDAIHEFSGT-------------------SEEVRVTIAN------------ADLAL 415
Cdd:TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEiepalalaqyylgkgqlkkALAILNEAADaapdspeawlmlGRAQL 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 416 AQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREIAERMANPRSFLLLGDAYMNILEPEEAIVAY 495
Cdd:TIGR02917 613 AAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 496 EQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHEPvnels 575
Cdd:TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP----- 767
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 576 almEDGRCQVLLAKVYSKMEKLGDAITALQQARELqarvlkrvqmeQPDAVPAQKHLAaeicaeiakHSVAQRDYEKAIK 655
Cdd:TIGR02917 768 ---NDAVLRTALAELYLAQKDYDKAIKHYQTVVKK-----------APDNAVVLNNLA---------WLYLELKDPRALE 824
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|
gi 767919830 656 FYREALVHCETDNKIMLELARLYLAQDDPDSCLRqcALLLQSDQDNEAAT 705
Cdd:TIGR02917 825 YAERALKLAPNIPAILDTLGWLLVEKGEADRALP--LLRKAVNIAPEAAA 872
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
228-502 |
6.40e-15 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 76.31 E-value: 6.40e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 228 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDF 307
Cdd:COG2956 28 IDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 308 KVRDYpLYHLIKAQSQKKmgEIADAIKTLHMAMSLpgmkrigastkskdrktevdTSHRLSIFLELIDVHRLNGEQHEAT 387
Cdd:COG2956 108 DDAEA-LRLLAEIYEQEG--DWEKAIEVLERLLKL--------------------GPENAHAYCELAELYLEQGDYDEAI 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 388 KVLQDAIhefSGTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKhRKDKMLYITCFREIAE 467
Cdd:COG2956 165 EALEKAL---KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK-LGDPEEALELLRKALE 240
|
250 260 270
....*....|....*....|....*....|....*
gi 767919830 468 RMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQN 502
Cdd:COG2956 241 LDPSDDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
476-613 |
3.56e-14 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 70.61 E-value: 3.56e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 476 LLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKN-YLCYDLAELLLKLKW 554
Cdd:COG4783 8 YALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEpEARLNLGLALLKAGD 87
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 767919830 555 YDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQAR 613
Cdd:COG4783 88 YDEALALLEKALKLDP--------EHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
554-783 |
7.47e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.80 E-value: 7.47e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 554 WYDKAEKVLQHALAHEPVNELSALMEdgrcqvLLAKVYSKMEKLGDAITALQQARELQARVLKRVQMEQPDAVPAQKHLA 633
Cdd:COG3914 4 AALLALAALAAAALLAAAAAAELALA------AELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 634 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 713
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 714 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGFQYCKGLYL 783
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRA------LELDPDNADAHSNLL 221
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
459-682 |
1.97e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 71.19 E-value: 1.97e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 459 ITCFRE-IAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQ 537
Cdd:COG0457 28 IEDYEKaLELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDP 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 538 KNYLCYD-LAELLLKLKWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQARVLK 616
Cdd:COG0457 108 DDAEALYnLGLALLELGRYDEAIEAYERALELDP--------DDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767919830 617 RVQMEQPDAVPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQD 682
Cdd:COG0457 180 AAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
481-807 |
4.02e-13 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 73.49 E-value: 4.02e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 481 AYMNILEPEEAIVAYEQALNQNPKDGTLAskmgKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEK 560
Cdd:COG3914 24 AELALAAELEAAALAAALGLALLLLAALA----EAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 561 VLQHALAHEPvNELSALmedgrcqVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaeicaEI 640
Cdd:COG3914 100 LYRRALALNP-DNAEAL-------FNLGNLLLALGRLEEALAALRRALALN-----------PDFAEAYLNLG-----EA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 641 AKHsvaQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQddpdsclrqcalllqsdqdneaatmmmadlmfrkQDYEQ 720
Cdd:COG3914 156 LRR---LGRLEEAIAALRRALELDPDNAEALNNLGNALQDL----------------------------------GRLEE 198
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 721 AVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFfsmaekRNSRAKLEPGFQYCKGLYLWYTGEpNDALRHFNKAR 800
Cdd:COG3914 199 AIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF------EELLAALARGPSELSPFALLYLPD-DDPAELLALAR 271
|
....*..
gi 767919830 801 KdrdWGQ 807
Cdd:COG3914 272 A---WAQ 275
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
471-732 |
4.18e-13 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 70.42 E-value: 4.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 471 NPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELL 549
Cdd:COG0457 7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALnNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 550 LKLKWYDKAEKVLQHALAHEPvnelsalmEDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQ 629
Cdd:COG0457 87 QALGRYEEALEDYDKALELDP--------DDAEALYNLGLALLELGRYDEAIEAYERALELD-----------PDDADAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 630 KHLAAEICAeiakhsvaQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMA 709
Cdd:COG0457 148 YNLGIALEK--------LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
|
250 260
....*....|....*....|...
gi 767919830 710 DLMFRKQDYEQAVFHLQQLLERK 732
Cdd:COG0457 220 AELLLLALALLLALRLAALALYQ 242
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
408-1050 |
7.40e-13 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 73.19 E-value: 7.40e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 408 IANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKH-------------------RKDKMLYIT-------C 461
Cdd:TIGR02917 26 IEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALgdyaaaekelrkalslgypKNQVLPLLArayllqgK 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 462 FREIAERMANPRS---------FLLLGDAYMNILEPEEAIVAYEQALNQNPKdgTLASKMGKALIKT--HNYSMAITYYE 530
Cdd:TIGR02917 106 FQQVLDELPGKTLlddegaaelLALRGLAYLGLGQLELAQKSYEQALAIDPR--SLYAKLGLAQLALaeNRFDEARALID 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 531 AALKTGQKNYLCYDL-AELLLKLKWYDKAEKVLQHALAHEPVNELSALMEDGrcqVLL-AKVYSKMEKlgDAITALQQAR 608
Cdd:TIGR02917 184 EVLTADPGNVDALLLkGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALAT---ILIeAGEFEEAEK--HADALLKKAP 258
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 609 -ELQARVLK-RVQMEQPDAVPAQKHLAAEICAE----IAKH-----SVAQRDYEKAIKFYREALVHCETDNKIMLELARL 677
Cdd:TIGR02917 259 nSPLAHYLKaLVDFQKKNYEDARETLQDALKSApeylPALLlagasEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASI 338
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 678 YLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPR 757
Cdd:TIGR02917 339 QLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 758 FFSMAEKRNS---RAKLEPGFQYC------KGLYL---WYTGEPNDALRHFNKA-----RKDRDWGQNALYNMIEIclNP 820
Cdd:TIGR02917 419 DLETAAQLDPelgRADLLLILSYLrsgqfdKALAAakkLEKKQPDNASLHNLLGaiylgKGDLAKAREAFEKALSI--EP 496
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 821 DNETVGGEvfenldgdLGNSTEKQESVQLAVRTAEKLLKELkPQTVQGHVQLRIMENyclmatkQKSNVEQALNTFTEIA 900
Cdd:TIGR02917 497 DFFPAAAN--------LARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL-------RTGNEEEAVAWLEKAA 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 901 ASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKmnwNAIDAEEFeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSC 980
Cdd:TIGR02917 561 ELNPQEIEPALALAQYYLGKGQLKKALAILNEAAD---AAPDSPEA---WLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767919830 981 CKAYEYMGYIMEKEQAYTDAALNYE--MAWKYSNRTNPAVgykLAFNYLKAKRYVDSIDICHQVLEAHPTYP 1050
Cdd:TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKraLELKPDNTEAQIG---LAQLLLAAKRTESAKKIAKSLQKQHPKAA 703
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
472-1048 |
1.80e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 71.65 E-value: 1.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 472 PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGtlaskmgkalikthnysmaityyEAalktgqkNYLcydLAELLLK 551
Cdd:TIGR02917 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDA-----------------------EA-------RFL---LGKIYLA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 552 LKWYDKAEKVLQHALahepvnelSALMEDGRCQVLLAKVYSKMEKLGDAITalqqarelqarvlkrvQMEQPDAVPAQkh 631
Cdd:TIGR02917 69 LGDYAAAEKELRKAL--------SLGYPKNQVLPLLARAYLLQGKFQQVLD----------------ELPGKTLLDDE-- 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 632 LAAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADL 711
Cdd:TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 712 MFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPrffSMAEKRNSRAKLEPGFQYCKGLYLWYTGEPND 791
Cdd:TIGR02917 203 LLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAE---KHADALLKKAPNSPLAHYLKALVDFQKKNYED 279
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 792 ALRHFNKARKDRDWGQNALY--NMIEICLNpDNETVGGEVFENLDGDLGNSTEKQ--ESVQLAVRTAEKLLKELKP--QT 865
Cdd:TIGR02917 280 ARETLQDALKSAPEYLPALLlaGASEYQLG-NLEQAYQYLNQILKYAPNSHQARRllASIQLRLGRVDEAIATLSPalGL 358
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 866 VQGHVQLRIMENYCLMATKQksnVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAEe 945
Cdd:TIGR02917 359 DPDDPAALSLLGEAYLALGD---FEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAD- 434
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 946 fekswLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKySNRTNPAVGYKLAFN 1025
Cdd:TIGR02917 435 -----LLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALS-IEPDFFPAAANLARI 508
|
570 580
....*....|....*....|...
gi 767919830 1026 YLKAKRYVDSIDICHQVLEAHPT 1048
Cdd:TIGR02917 509 DIQEGNPDDAIQRFEKVLTIDPK 531
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
401-570 |
7.33e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.06 E-value: 7.33e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 401 SEEVRVTIANADLALAQGDIERALSILQNVTAEQPYfiearekmadiylkhrkdkmlyitcfreiaermaNPRSFLLLGD 480
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPD----------------------------------NPEAFALLGE 46
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 481 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYD-LAELLLKLKWYDKAE 559
Cdd:COG4783 47 ILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLrLARAYRALGRPDEAI 126
|
170
....*....|.
gi 767919830 560 KVLQHALAHEP 570
Cdd:COG4783 127 AALEKALELDP 137
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
837-1047 |
9.46e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 66.68 E-value: 9.46e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 837 LGNSTEKQESVQLAVRTAEKLLkELKPQTVQGHVQLrimenyCLMATKQKsNVEQALNTFTEIAASEKEHIPALLGMATA 916
Cdd:COG2956 48 LGNLYRRRGEYDRAIRIHQKLL-ERDPDRAEALLEL------AQDYLKAG-LLDRAEELLEKLLELDPDDAEALRLLAEI 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 917 YMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQA 996
Cdd:COG2956 120 YEQEGDWEKAIEVLERLLKLGPENAHA------YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGD 193
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 767919830 997 YTDAALNYEMAWKySNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHP 1047
Cdd:COG2956 194 YEEAIAALERALE-QDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
409-570 |
1.50e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.48 E-value: 1.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 409 ANADLALAQGDIERALSILQNVTAEQPYFIEAREkmadiyLKHRKDKMLYITCFREIAERM-ANPRSFLLLGDAYMNILE 487
Cdd:COG3914 54 AAAAALLALAAGEAAAAAAALLLLAALLELAALL------LQALGRYEEALALYRRALALNpDNAEALFNLGNLLLALGR 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 488 PEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK-TGQKNYLCYDLAELLLKLKWYDKAEKVLQHAL 566
Cdd:COG3914 128 LEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALElDPDNAEALNNLGNALQDLGRLEEAIAAYRRAL 207
|
....
gi 767919830 567 AHEP 570
Cdd:COG3914 208 ELDP 211
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
471-579 |
2.16e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 62.33 E-value: 2.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 471 NPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLC-YDLAELL 549
Cdd:COG4235 16 DAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAlYLLGLAA 95
|
90 100 110
....*....|....*....|....*....|
gi 767919830 550 LKLKWYDKAEKVLQHALAHEPVNELSALME 579
Cdd:COG4235 96 FQQGDYAEAIAAWQKLLALLPADAPARLLE 125
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
376-797 |
1.13e-10 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 65.87 E-value: 1.13e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 376 VHRLNGEQHEATKVLQdAIHEFSGTSEEVRVTIANadLALAQGDIERALSILQNVtAEQPyfiEAREKMADIYLKHRKDK 455
Cdd:PRK11447 156 VAKLPAQRPEAINQLQ-RLNADYPGNTGLRNTLAL--LLFSSGRRDEGFAVLEQM-AKSP---AGRDAAAQLWYGQIKDM 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 456 ML----------YITCFREiAERMANPRSFL-----LLGD-AYMNILE---------PEEAIVAYEQALNQNPKDGTLAS 510
Cdd:PRK11447 229 PVsdasvaalqkYLQVFSD-GDSVAAARSQLaeqqkQLADpAFRARAQglaavdsgqGGKAIPELQQAVRANPKDSEALG 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 511 KMGKALIKTHNYSMAITYYEAALKTGQKNYlcydlaelllklkWYDKAEKVLQhalahepVNELSALMEDGRcQVLLAKV 590
Cdd:PRK11447 308 ALGQAYSQQGDRARAVAQFEKALALDPHSS-------------NRDKWESLLK-------VNRYWLLIQQGD-AALKANN 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 591 YSKMEKLgdaitaLQQARelqarvlkrvQMEQPDAvpaqkhLAAEICAEIAkhsVAQRDYEKAIKFYREALvHCETDNKI 670
Cdd:PRK11447 367 LAQAERL------YQQAR----------QVDNTDS------YAVLGLGDVA---MARKDYAAAERYYQQAL-RMDPGNTN 420
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 671 MLE-LARLYLAQDdPDSCLRQCALLLQSDQ----DNEAATMM-----MADLMFRKQDYEQAVFHLQQLLERKPDNYMTLS 740
Cdd:PRK11447 421 AVRgLANLYRQQS-PEKALAFIASLSASQRrsidDIERSLQNdrlaqQAEALENQGKWAQAAELQRQRLALDPGSVWLTY 499
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830 741 RLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFN 797
Cdd:PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN---DPEQVYAYGLYLSGSDRDRAALAHLN 553
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
850-1066 |
2.21e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 62.82 E-value: 2.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 850 AVRTAEKLLkELKPQTVQGHVQL-RIMEnyclmatkQKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARN 928
Cdd:COG2956 27 AIDLLEEAL-ELDPETVEAHLALgNLYR--------RRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 929 QLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAW 1008
Cdd:COG2956 98 LLEKLLELDPDDAEA------LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 767919830 1009 KYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTYPKIRKDILDKARASLRP 1066
Cdd:COG2956 172 KL-DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDP 228
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
633-766 |
4.57e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.66 E-value: 4.57e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 633 AAEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLM 712
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLAL 82
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 767919830 713 FRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRN 766
Cdd:COG4783 83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
634-735 |
1.45e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 56.94 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 634 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 713
Cdd:COG4235 17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|..
gi 767919830 714 RKQDYEQAVFHLQQLLERKPDN 735
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPAD 118
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
671-801 |
1.87e-09 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 57.12 E-value: 1.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 671 MLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCG 750
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 767919830 751 KLEDVPRFFSMAEKRNSRaklEPGFQYCKGLYLWYTGEPNDALRHFNKARK 801
Cdd:COG4783 87 DYDEALALLEKALKLDPE---HPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
80-534 |
4.40e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.87 E-value: 4.40e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 80 LGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEflnEIQQSIGKSAELIYLHAVLAMKKN 159
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE---KVLTIDPKNLRAILALAGLYLRTG 547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 160 kRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPdflleivmeylsfcpmqpaspgqplcplLRRCISVLETVVRTVP 239
Cdd:TIGR02917 548 -NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQ----------------------------LKKALAILNEAADAAP 598
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 240 GLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIK 319
Cdd:TIGR02917 599 DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGL 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 320 AQSQKKMGEIADAIKTLHM--------AMSLPGMKRIGASTKS-KDRKTEVDTSHRLS----IFLELIDVHRLNGEQHEA 386
Cdd:TIGR02917 676 AQLLLAAKRTESAKKIAKSlqkqhpkaALGFELEGDLYLRQKDyPAAIQAYRKALKRApssqNAIKLHRALLASGNTAEA 755
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 387 TKVLQDAIHEfsgTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLyitcfrEIA 466
Cdd:TIGR02917 756 VKTLEAWLKT---HPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPRAL------EYA 826
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 767919830 467 ERM-----ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 534
Cdd:TIGR02917 827 ERAlklapNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
499-731 |
5.87e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.09 E-value: 5.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 499 LNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNY-LCYDLAELLLKLKWYDKAEKVLQHALAHEPvnelsal 577
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAeALYNLGLAYLRLGRYEEALADYEQALELDP------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 578 mEDGRCQVLLAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaEICAEiakhsvaQRDYEKAIKFY 657
Cdd:COG0457 74 -DDAEALNNLGLALQALGRYEEALEDYDKALELD-----------PDDAEALYNLG-LALLE-------LGRYDEAIEAY 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 767919830 658 REALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLER 731
Cdd:COG0457 134 ERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
587-777 |
7.06e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 57.71 E-value: 7.06e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 587 LAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQKHLAaeicaeIAKHsvAQRDYEKAIKFYREALVHCET 666
Cdd:COG0457 14 LGLAYRRLGRYEEAIEDYEKALELD-----------PDDAEALYNLG------LAYL--RLGRYEEALADYEQALELDPD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 667 DNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLL 746
Cdd:COG0457 75 DAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
|
170 180 190
....*....|....*....|....*....|.
gi 767919830 747 RRCGKLEDVPRFFSMAEKRNSRAKLEPGFQY 777
Cdd:COG0457 155 EKLGRYEEALELLEKLEAAALAALLAAALGE 185
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
376-609 |
1.35e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 56.94 E-value: 1.35e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 376 VHRLNGEQHEATKVLQDAIhEFSGTSEEVRVTIANAdlALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDK 455
Cdd:COG0457 17 AYRRLGRYEEAIEDYEKAL-ELDPDDAEALYNLGLA--YLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 456 MlYITCFRE-IAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 534
Cdd:COG0457 94 E-ALEDYDKaLELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEA 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767919830 535 tgQKNYLCYDLAELLLKLKWYDKAEKVLQHALAHEPVNELSALMEDGRCQVLLAKVYSKMEKLGDAITALQQARE 609
Cdd:COG0457 173 --AALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYRA 245
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
463-571 |
4.68e-08 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 53.43 E-value: 4.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 463 REIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKN-YL 541
Cdd:COG5010 45 AGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNpNA 124
|
90 100 110
....*....|....*....|....*....|
gi 767919830 542 CYDLAELLLKLKWYDKAEKVLQHALAHEPV 571
Cdd:COG5010 125 YSNLAALLLSLGQDDEAKAALQRALGTSPL 154
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
481-570 |
6.87e-08 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 51.32 E-value: 6.87e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 481 AYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKLKWYDKAEK 560
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|
gi 767919830 561 VLQHALAHEP 570
Cdd:COG3063 81 YLERALELDP 90
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
648-758 |
7.00e-08 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 55.97 E-value: 7.00e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 648 RDYEKAIKFYREALVHCETDNKIML-----ELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAV 722
Cdd:PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIahfycELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAI 234
|
90 100 110
....*....|....*....|....*....|....*..
gi 767919830 723 FHLQQLLERKPDnYMTLsrLIDLLRRC-GKLEDVPRF 758
Cdd:PRK11788 235 EALERVEEQDPE-YLSE--VLPKLMECyQALGDEAEG 268
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
587-735 |
7.80e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.50 E-value: 7.80e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 587 LAKVYSKMEKLGDAITALQQARELQarvlkrvqmeqPDAVPAQkhlaaeicAEIAKHSVAQRDYEKAIKFYREALVHCET 666
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKALELD-----------PDNPEAF--------ALLGEILLQLGDLDEAIVLLHEALELDPD 70
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767919830 667 DNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN 735
Cdd:COG4783 71 EPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
890-1046 |
9.42e-08 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 54.24 E-value: 9.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 890 EQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDL 969
Cdd:COG0457 25 EEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA------LNNLGLALQALGRYEEALED 98
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830 970 LKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAH 1046
Cdd:COG0457 99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALEL-DPDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
|
| PRK11788 |
PRK11788 |
tetratricopeptide repeat protein; Provisional |
357-503 |
1.65e-07 |
|
tetratricopeptide repeat protein; Provisional
Pssm-ID: 236983 [Multi-domain] Cd Length: 389 Bit Score: 54.81 E-value: 1.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 357 RKTEVDTSHRLSIFL-ELIDVHRLNGEQHEATKVLQDAIHEFSGTseeVRVTIANADLALAQGDIERALSILQNVTAEQP 435
Cdd:PRK11788 169 KLGGDSLRVEIAHFYcELAQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDP 245
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 436 -YFIEAREKMADIYLK-HRKDKmlYITCFREIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNP 503
Cdd:PRK11788 246 eYLSEVLPKLMECYQAlGDEAE--GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
422-552 |
2.96e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 50.39 E-value: 2.96e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 422 RALSILQNVTAEQPYFIEAREKMADIYLK-HRKDKMlyITCFREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQAL 499
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRlGRYDEA--LAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERAL 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 767919830 500 NQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLCYDLAELLLKL 552
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
905-1049 |
3.09e-07 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 50.58 E-value: 3.09e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 905 EHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAY 984
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA------FALLGEILLQLGDLDEAIVLLHEALELDPDEPEAR 75
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767919830 985 EYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHPTY 1049
Cdd:COG4783 76 LNLGLALLKAGDYDEALALLEKALKL-DPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
521-742 |
3.89e-07 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 53.38 E-value: 3.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 521 NYSMAITYYEAALKTGQKNYLCYDL--AELLLKLKWYDKAEKVLQHALAHEPVN------ELSALMEDGRCQVLLaKVYS 592
Cdd:COG3071 65 DYERRDEYLAQALELAPEAELAVLLtrAELLLDQGQAEQALATLEALRAGAPRHpqvlrlLLQAYRQLGDWEELL-ELLP 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 593 KMEKLGdAITAlQQARELQARV---LKRVQMEQPDA-------VPAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALV 662
Cdd:COG3071 144 ALRKHK-ALSA-EEAQALERRAylgLLRQAARDAEAlkalwkaLPRAERRDPELAAAYARALIALGDHDEAERLLREALK 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 663 HCETDnkimlELARLY--LAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDN--YMT 738
Cdd:COG3071 222 RQWDP-----RLVRLYgrLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPSAeaYAE 296
|
....
gi 767919830 739 LSRL 742
Cdd:COG3071 297 LARL 300
|
|
| HemYx |
COG3071 |
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ... |
392-695 |
1.13e-06 |
|
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];
Pssm-ID: 442305 [Multi-domain] Cd Length: 323 Bit Score: 51.83 E-value: 1.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 392 DAIHEFSGTSEEVrVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYitcfrEIAERMAN 471
Cdd:COG3071 74 AQALELAPEAELA-VLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELL-----ELLPALRK 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 472 PRsflLLGDAYMNILEPEeaivAYEQALNQNPKDGTLASKMGKALikthnysmaityyEAALKtgQKNYLCYDLAELLLK 551
Cdd:COG3071 148 HK---ALSAEEAQALERR----AYLGLLRQAARDAEALKALWKAL-------------PRAER--RDPELAAAYARALIA 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 552 LKWYDKAEKVLQHALAHEPVNELSALMedGRCQvllakvyskmekLGDAITALQQARELQArvlkrvqmEQPDAvPAQKH 631
Cdd:COG3071 206 LGDHDEAERLLREALKRQWDPRLVRLY--GRLQ------------GGDPAKQLKRAEKWLK--------KHPND-PDLLL 262
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830 632 LAAEICaeiakhsVAQRDYEKAIKFYREALVHcETDNKIMLELARLYLAQDDPDS---CLRQCALLL 695
Cdd:COG3071 263 ALGRLC-------LRNQLWGKAREYLEAALAL-RPSAEAYAELARLLEQLGDPEEaaeHYRKALALA 321
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
646-736 |
2.59e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 46.70 E-value: 2.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 646 AQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLrQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHL 725
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82
|
90
....*....|.
gi 767919830 726 QQLLERKPDNY 736
Cdd:COG3063 83 ERALELDPSAL 93
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
62-206 |
3.65e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.73 E-value: 3.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 62 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDAdqqLEFLNEIQQSI 141
Cdd:COG2956 132 VLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEA---IAALERALEQD 208
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767919830 142 GKSAELIYLHAVLAMKKNkRQEEVINLLNDVLDTHFSQLEGLPLGIQYFEKLNPDFLLEIVMEYL 206
Cdd:COG2956 209 PDYLPALPRLAELYEKLG-DPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQL 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
62-293 |
3.75e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 49.73 E-value: 3.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 62 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDAdqqLEFLNEIQQSI 141
Cdd:COG2956 64 IHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKA---IEVLERLLKLG 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 142 GKSAELIYLHAVLAMKKNKRqEEVINLLNDVLDTHfsqleglplgiqyfeKLNPDFLLEIVMEYLSFcpmqpaspGQPlc 221
Cdd:COG2956 141 PENAHAYCELAELYLEQGDY-DEAIEALEKALKLD---------------PDCARALLLLAELYLEQ--------GDY-- 194
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767919830 222 pllRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSyADAHLLLAQVYLSQEKVK 293
Cdd:COG2956 195 ---EEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLERKEGLE 262
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
584-733 |
4.14e-06 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 48.03 E-value: 4.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 584 QVLLAKVYSKMEKLGDAITALQQARELQARVLKRVQMEQPDAVPAQKHLAAEICAEIAKHsvAQRDYEKAIKFYREALVH 663
Cdd:COG5010 6 GFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYN--KLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 664 CETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKP 733
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
223-428 |
9.98e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.57 E-value: 9.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 223 LLRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELC 302
Cdd:COG2956 91 LLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 303 LSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLhmamslpgmkrigastkskdRKTEVDTSHRLSIFLELIDVHRLNGE 382
Cdd:COG2956 171 LKLD---PDCARALLLLAELYLEQGDYEEAIAAL--------------------ERALEQDPDYLPALPRLAELYEKLGD 227
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 767919830 383 QHEATKVLQDAIHEFSGTSEEvrvtIANADLALAQGDIERALSILQ 428
Cdd:COG2956 228 PEEALELLRKALELDPSDDLL----LALADLLERKEGLEAALALLE 269
|
|
| MamA |
NF040959 |
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise ... |
634-800 |
1.10e-05 |
|
magnetosome protein MamA; Magnetosomes are special lipid-bound organelles that comprise magnetic mineral crystals in magnetotactic bacteria (MTB). Magnetosomes are important for MTB to search for preferred microaerophilic environment. Proteins of this family typically contain five tetra-trico-peptide repeat (TPR) motifs. Based on structural analyses, MamA forms a large homooligomer through self-recognition to regulate protein-protein interaction in magnetosomes.
Pssm-ID: 468889 [Multi-domain] Cd Length: 204 Bit Score: 47.37 E-value: 1.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 634 AEICAEIAKHSVAQRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMF 713
Cdd:NF040959 37 AKMYRNKGISHAKKGRYDKAVRYLEQVARIDPDDVEALYRLGVAYLKTGQYDRAIKVLEKVLSLAPDHVKAAYRKGVALL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 714 RKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAekrnsrAKLEPGF-QYCKGLYLWYT--GEPN 790
Cdd:NF040959 117 KIKDYEKAVEDLEEALEEKPDNFNLNYRLGLALDGLGQYDKAIEAFQKA------LELDPNEiKYHQAIGFMYVqkGDHE 190
|
170
....*....|
gi 767919830 791 DALRHFNKAR 800
Cdd:NF040959 191 TAAEHFKKAM 200
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
366-505 |
1.14e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.34 E-value: 1.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 366 RLSIFLELIDVHRLNGEQHEATKVLQDAIHEFSgtsEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMA 445
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDP---DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLG 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767919830 446 DIYLK-HRKDKMlyITCFREIAERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKD 505
Cdd:COG4783 80 LALLKaGDYDEA--LALLEKALKLDpEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
891-1007 |
1.62e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 1.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 891 QALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLL 970
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADA------LLDLAEALLAAGDTEEAEELL 74
|
90 100 110
....*....|....*....|....*....|....*..
gi 767919830 971 KRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMA 1007
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKL 111
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
695-801 |
2.24e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 2.24e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 695 LQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSRaklEPG 774
Cdd:COG4235 10 LAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPD---NPE 86
|
90 100
....*....|....*....|....*..
gi 767919830 775 FQYCKGLYLWYTGEPNDALRHFNKARK 801
Cdd:COG4235 87 ALYLLGLAAFQQGDYAEAIAAWQKLLA 113
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
888-977 |
2.64e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.00 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 888 NVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAE 967
Cdd:COG4235 32 RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEA------LYLLGLAAFQQGDYAEAI 105
|
90
....*....|
gi 767919830 968 DLLKRCLRHN 977
Cdd:COG4235 106 AAWQKLLALL 115
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
950-1056 |
4.88e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.41 E-value: 4.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 950 WLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAFNYLKA 1029
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL-DPDEPEARLNLGLALLKA 85
|
90 100
....*....|....*....|....*..
gi 767919830 1030 KRYVDSIDICHQVLEAHPTYPKIRKDI 1056
Cdd:COG4783 86 GDYDEALALLEKALKLDPEHPEAYLRL 112
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
480-570 |
8.90e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 43.06 E-value: 8.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 480 DAYMNILEPEEAIVAYEQALNQNPKDGTLAS---KMGKALIKTHNYSMAITYYEAALKTGQKNYLC----YDLAELLLKL 552
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLAPDalyWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKApdalLKLGLSYLEL 80
|
90
....*....|....*...
gi 767919830 553 KWYDKAEKVLQHALAHEP 570
Cdd:COG1729 81 GDYDKARATLEELIKKYP 98
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
463-611 |
1.19e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.80 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 463 REIAERMANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNYLC 542
Cdd:COG5010 11 PLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPEL 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 543 Y-DLAELLLKLKWYDKAEKVLQHALAHEPVNELSALmedgrcqvLLAKVYSKMEKLGDAITALQQARELQ 611
Cdd:COG5010 91 YyNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYS--------NLAALLLSLGQDDEAKAALQRALGTS 152
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
515-616 |
1.75e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 515 ALIKTHNYSMAITYYEAALKTGQKNYLCY-DLAELLLKLKWYDKAEKvLQHALAHEPvnelsalmEDGRCQVLLAKVYSK 593
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALnNLGLLLLEQGRYDEAIA-LEKALKLDP--------NNAEALLNLAELLLE 71
|
90 100
....*....|....*....|...
gi 767919830 594 MEKLGDAITALQQARELQARVLK 616
Cdd:COG3063 72 LGDYDEALAYLERALELDPSALR 94
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
256-342 |
1.96e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 256 GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKT 335
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDFAEAYLNLGEALRRLGRLEEAIAA 168
|
....*..
gi 767919830 336 LHMAMSL 342
Cdd:COG3914 169 LRRALEL 175
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
20-151 |
2.06e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 45.37 E-value: 2.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 20 LENLGNTLDAME----------------PQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQQSEFATELGYQ 83
Cdd:COG3914 115 LFNLGNLLLALGrleealaalrralalnPDFAEAYLNLGEALRRL-GR----LEEAIAALRRALELDPDNAEALNNLGNA 189
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767919830 84 MILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQQSIGKSAELIYLH 151
Cdd:COG3914 190 LQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGPSELSPFALLY 257
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
945-1053 |
2.11e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 44.23 E-value: 2.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 945 EFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKYsNRTNPAVGYKLAF 1024
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALEL-DPDDAEALNNLGL 84
|
90 100
....*....|....*....|....*....
gi 767919830 1025 NYLKAKRYVDSIDICHQVLEAHPTYPKIR 1053
Cdd:COG0457 85 ALQALGRYEEALEDYDKALELDPDDAEAL 113
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
224-342 |
2.26e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 42.49 E-value: 2.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 224 LRRCISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCL 303
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKAL 99
|
90 100 110
....*....|....*....|....*....|....*....
gi 767919830 304 SYDfkvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 342
Cdd:COG4783 100 KLD---PEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
627-879 |
2.80e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.98 E-value: 2.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 627 PAQKHLAAEICAEIAKHSVAQRDYEKAIKFYREALVHCEtdNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATM 706
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAA--ALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 707 MM----ADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDvprffsmAEKRNSRA-KLEPGF---QYC 778
Cdd:COG3914 79 ALlelaALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEE-------ALAALRRAlALNPDFaeaYLN 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 779 KGLYLWYTGEPNDALRHFNKArkdrdwgqnalynmieICLNPDNEtvggEVFENldgdLGNSTEKQESVQLAVRTAEKLL 858
Cdd:COG3914 152 LGEALRRLGRLEEAIAALRRA----------------LELDPDNA----EALNN----LGNALQDLGRLEEAIAAYRRAL 207
|
250 260
....*....|....*....|..
gi 767919830 859 kELKPQTVQGHVQ-LRIMENYC 879
Cdd:COG3914 208 -ELDPDNADAHSNlLFALRQAC 228
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
9-132 |
3.75e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.72 E-value: 3.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 9 REGDIEKAstklENLGNTLDAMEPQNAQLFYNITLAFSRTcGRsqliLQKIQTLLERAFSLNPQQSEFATELGYQMILQG 88
Cdd:COG4783 16 LAGDYDEA----EALLEKALELDPDNPEAFALLGEILLQL-GD----LDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 767919830 89 RVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 132
Cdd:COG4783 87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALE 130
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
836-977 |
6.05e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 41.33 E-value: 6.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 836 DLGNSTEKQESVQLAVRTAEKLLKeLKPQTVQGHVQLrimeNYCLMATKQksnVEQALNTFTEIAASEKEHIPALLGMAT 915
Cdd:COG4783 9 ALAQALLLAGDYDEAEALLEKALE-LDPDNPEAFALL----GEILLQLGD---LDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767919830 916 AYMILKQTPRARNQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYDMAEDLLKRCLRHN 977
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEA------YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
228-320 |
6.24e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.83 E-value: 6.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 228 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQ----EKVKLCSQSLELCL 303
Cdd:COG3914 132 LAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLgrleEAIAAYRRALELDP 211
|
90
....*....|....*..
gi 767919830 304 SYDfKVRDYPLYHLIKA 320
Cdd:COG3914 212 DNA-DAHSNLLFALRQA 227
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
471-540 |
6.54e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 6.54e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 471 NPRSFLLLGDAYMNILEPEEAIvAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALKTGQKNY 540
Cdd:COG3063 25 NADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
386-534 |
7.00e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.48 E-value: 7.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 386 ATKVLQDAIHEFSGTSEEVRVTIANADLALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLYITCFREI 465
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 466 AERM-ANPRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLASKMGKALIKTHNYSMAITYYEAALK 534
Cdd:COG5010 81 LQLDpNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALG 150
|
|
| COG4700 |
COG4700 |
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown]; |
463-619 |
7.40e-04 |
|
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
Pssm-ID: 443735 [Multi-domain] Cd Length: 249 Bit Score: 42.56 E-value: 7.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 463 REIAERMA---NPRSFLLLGDAYMNILEPEEAIVAYEQALNQN-PKDGTLASKMGKALIKTHNYSMAITYYEAALKT--- 535
Cdd:COG4700 77 RELEKALEfadTVQNRVRLADALLELGRYDEAIELYEEALTGIfADDPHILLGLAQALFELGRYAEALETLEKLIAKnpd 156
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 536 --GQKNYLCYDLAelLLKLKWYDKAEKVLQHALAHEPVNElsalmedGRCQvlLAKVYSKMEKLGDAITALQQ------- 606
Cdd:COG4700 157 fkSSDAHLLYARA--LEALGDLEAAEAELEALARRYSGPE-------ARYR--YAKFLARQGRTAEAKELLEEildeakh 225
|
170
....*....|....*..
gi 767919830 607 ----ARELQARVLKRVQ 619
Cdd:COG4700 226 mpkhYRRLNREWIREAK 242
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
956-1047 |
7.95e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 39.77 E-value: 7.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 956 IYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYtDAALNYEMAWKYsNRTNPAVGYKLAFNYLKAKRYVDS 1035
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRY-DEAIALEKALKL-DPNNAEALLNLAELLLELGDYDEA 78
|
90
....*....|..
gi 767919830 1036 IDICHQVLEAHP 1047
Cdd:COG3063 79 LAYLERALELDP 90
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
647-734 |
8.67e-04 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.97 E-value: 8.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 647 QRDYEKAIKFYREALVHCETDN---KIMLELARLYLAQDDPDSCLRQCALLLQSDQDNE---AATMMMADLMFRKQDYEQ 720
Cdd:COG1729 6 AGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDK 85
|
90
....*....|....
gi 767919830 721 AVFHLQQLLERKPD 734
Cdd:COG1729 86 ARATLEELIKKYPD 99
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
242-342 |
9.95e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.56 E-value: 9.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 242 LQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDfkvRDYPLYHLIKAQ 321
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD---PDEPEARLNLGL 80
|
90 100
....*....|....*....|.
gi 767919830 322 SQKKMGEIADAIKTLHMAMSL 342
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKL 101
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
459-535 |
1.14e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 459 ITCFREIAERMAN----PRSFLLLGDAYMNILEPEEAIVAYEQALNQNPKDGTLAS---KMGKALIKTHNYSMAITYYEA 531
Cdd:COG1729 13 IAAFKAFLKRYPNsplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDKARATLEE 92
|
....
gi 767919830 532 ALKT 535
Cdd:COG1729 93 LIKK 96
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
514-609 |
1.32e-03 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 39.59 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 514 KALIKTHNYSMAITYYEAALKTGQKNYL----CYDLAELLLKLKWYDKAEKVLQHALAHEPVNELSAlmedgRCQVLLAK 589
Cdd:COG1729 1 KALLKAGDYDEAIAAFKAFLKRYPNSPLapdaLYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAP-----DALLKLGL 75
|
90 100
....*....|....*....|
gi 767919830 590 VYSKMEKLGDAITALQQARE 609
Cdd:COG1729 76 SYLELGDYDKARATLEELIK 95
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
10-132 |
1.52e-03 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 41.44 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 10 EGDIEKASTKLENLGNTLDAMEPQNAQLFYNITLAFSRtCGRSQLILQkiqtLLERAFSLNPQQSEFATELGYQMILQGR 89
Cdd:COG4785 48 LAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDS-LGDYDLAIA----DFDQALELDPDLAEAYNNRGLAYLLLGD 122
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 767919830 90 VKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 132
Cdd:COG4785 123 YDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLE 165
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
255-321 |
1.63e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.63e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767919830 255 SGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKlcsQSLELCLSYDFKVRDYPLYHLIKAQ 321
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLD---EAEALLAALPAADPDDPRYAALLAK 64
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
647-711 |
1.68e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 37.95 E-value: 1.68e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767919830 647 QRDYEKAIKFYREALVHCETDNKIMLELARLYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADL 711
Cdd:pfam14559 1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
677-769 |
1.95e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 38.61 E-value: 1.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 677 LYLAQDDPDSCLRQCALLLQSDQDNEAATMMMADLMFRKQDYEQAVfHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVP 756
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|...
gi 767919830 757 RFFSMAEKRNSRA 769
Cdd:COG3063 80 AYLERALELDPSA 92
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
695-799 |
2.36e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 40.76 E-value: 2.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 695 LQSDQDNEAATMMMADLMFRKQDYEQAVFHLQQLLERKPDNYMTLSRLIDLLRRCGKLEDVPRFFSMAEKRNSRAklePG 774
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDD---AE 77
|
90 100
....*....|....*....|....*
gi 767919830 775 FQYCKGLYLWYTGEPNDALRHFNKA 799
Cdd:COG0457 78 ALNNLGLALQALGRYEEALEDYDKA 102
|
|
| YfgM |
COG2976 |
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ... |
639-754 |
3.10e-03 |
|
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];
Pssm-ID: 442215 [Multi-domain] Cd Length: 207 Bit Score: 40.22 E-value: 3.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 639 EIAKHSVAQRDYEKAIKFYREALVHCETDN---KIMLELARLYLAQDDPDSclrqcAL-LLQSDQDNEAATMM---MADL 711
Cdd:COG2976 95 LLAKAAVDAGDLDKAAAQLQWVLDNAKDPAlkaLARLRLARVLLAQKKYDE-----ALaTLDAVKPEAFAALYaelRGDI 169
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 767919830 712 MFRKQDYEQAVFHLQQLLERKPDNYMtLSRLIDLlrrcgKLED 754
Cdd:COG2976 170 LLAQGDKAEARAAYQKALAALPEDAP-LRQLLQM-----KLDD 206
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
413-504 |
3.58e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 3.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 413 LALAQGDIERALSILQNVTAEQPYFIEAREKMADIYLKHRKDKMLyITCFREIAERMANPRSFLLLGDAYMNILEPEEAI 492
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 767919830 493 VAYEQALNQNPK 504
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
885-979 |
3.72e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 3.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 885 QKSNVEQALNTFTEIAASEKEHIPALLGMATAYMILKQTPRARnQLKRIAKMNWNAIDAeefeksWLLLADIYIQSAKYD 964
Cdd:COG3063 4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEA------LLNLAELLLELGDYD 76
|
90
....*....|....*
gi 767919830 965 MAEDLLKRCLRHNRS 979
Cdd:COG3063 77 EALAYLERALELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
946-1058 |
3.77e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 40.48 E-value: 3.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 946 FEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNYEMAWKySNRTNPAVGYKLAFN 1025
Cdd:COG2956 7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLE-RDPDRAEALLELAQD 85
|
90 100 110
....*....|....*....|....*....|...
gi 767919830 1026 YLKAKRYVDSIDICHQVLEAHPTYPKIRKDILD 1058
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
256-342 |
4.02e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 4.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 256 GDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLcSQSLELCLSYDfkvRDYPLYHLIKAQSQKKMGEIADAIKT 335
Cdd:COG3063 6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDE-AIALEKALKLD---PNNAEALLNLAELLLELGDYDEALAY 81
|
....*..
gi 767919830 336 LHMAMSL 342
Cdd:COG3063 82 LERALEL 88
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
61-174 |
5.39e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 40.75 E-value: 5.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 61 TLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLEFLNEIQqs 140
Cdd:COG3914 99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD-- 176
|
90 100 110
....*....|....*....|....*....|....
gi 767919830 141 iGKSAElIYLHAVLAMKKNKRQEEVINLLNDVLD 174
Cdd:COG3914 177 -PDNAE-ALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
228-342 |
6.21e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.60 E-value: 6.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 228 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDf 307
Cdd:COG0457 28 IEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELD- 106
|
90 100 110
....*....|....*....|....*....|....*
gi 767919830 308 kvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 342
Cdd:COG0457 107 --PDDAEALYNLGLALLELGRYDEAIEAYERALEL 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
29-132 |
6.26e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.60 E-value: 6.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 29 AMEPQNAQLFYNITLAFSRTcGRSQLILQkiqtLLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSV 108
Cdd:COG0457 70 ELDPDDAEALNNLGLALQAL-GRYEEALE----DYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDA 144
|
90 100
....*....|....*....|....
gi 767919830 109 SALVGFIQCQLIEGQLQDADQQLE 132
Cdd:COG0457 145 DALYNLGIALEKLGRYEEALELLE 168
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
925-1047 |
7.29e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 7.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 925 RARNQLKRIAKMNWNAIDAEEFEKSWLLLADIYIQSAKYDMAEDLLKRCLRHNRSCCKAYEYMGYIMEKEQAYTDAALNY 1004
Cdd:COG5010 32 AGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYY 111
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 767919830 1005 EMAWKYsNRTNPAVGYKLAFNYLKAKRYVDSIDICHQVLEAHP 1047
Cdd:COG5010 112 EKALAL-SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
62-132 |
7.78e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 38.40 E-value: 7.78e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767919830 62 LLERAFSLNPQQSEFATELGYQMILQGRVKEALKWYKTAMTLDETSVSALVGFIQCQLIEGQLQDADQQLE 132
Cdd:COG5010 76 LLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
228-342 |
8.15e-03 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 37.68 E-value: 8.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767919830 228 ISVLETVVRTVPGLLQTVFLIAKVKYLSGDIEAAFNNLQHCLEHNPSYADAHLLLAQVYLSQEKVKLCSQSLELCLSYDf 307
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD- 81
|
90 100 110
....*....|....*....|....*....|....*
gi 767919830 308 kvRDYPLYHLIKAQSQKKMGEIADAIKTLHMAMSL 342
Cdd:COG4235 82 --PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| |
