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Conserved domains on  [gi|1907126615|ref|XP_011245002|]
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radial spoke head protein 9 homolog isoform X3 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Radial_spoke super family cl04698
Radial spokehead-like protein; This family includes the radial spoke head proteins RSP4 and ...
132-166 6.66e-06

Radial spokehead-like protein; This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologs, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene.


The actual alignment was detected with superfamily member pfam04712:

Pssm-ID: 461405 [Multi-domain]  Cd Length: 406  Bit Score: 44.95  E-value: 6.66e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1907126615 132 ALVVLRSLLWPGL-TFYhapRTKNYGYIYVGTGEKN 166
Cdd:pfam04712 374 AVAVLRSNLWPGAhAFA---VGKKFENIYIGWGLKY 406
 
Name Accession Description Interval E-value
Radial_spoke pfam04712
Radial spokehead-like protein; This family includes the radial spoke head proteins RSP4 and ...
132-166 6.66e-06

Radial spokehead-like protein; This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologs, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene.


Pssm-ID: 461405 [Multi-domain]  Cd Length: 406  Bit Score: 44.95  E-value: 6.66e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1907126615 132 ALVVLRSLLWPGL-TFYhapRTKNYGYIYVGTGEKN 166
Cdd:pfam04712 374 AVAVLRSNLWPGAhAFA---VGKKFENIYIGWGLKY 406
 
Name Accession Description Interval E-value
Radial_spoke pfam04712
Radial spokehead-like protein; This family includes the radial spoke head proteins RSP4 and ...
132-166 6.66e-06

Radial spokehead-like protein; This family includes the radial spoke head proteins RSP4 and RSP6 from Chlamydomonas reinhardtii, and several eukaryotic homologs, including mammalian RSHL1, the protein product of a familial ciliary dyskinesia candidate gene.


Pssm-ID: 461405 [Multi-domain]  Cd Length: 406  Bit Score: 44.95  E-value: 6.66e-06
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 1907126615 132 ALVVLRSLLWPGL-TFYhapRTKNYGYIYVGTGEKN 166
Cdd:pfam04712 374 AVAVLRSNLWPGAhAFA---VGKKFENIYIGWGLKY 406
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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