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Conserved domains on  [gi|755528520|ref|XP_011240747|]
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transmembrane protease serine 13 isoform X2 [Mus musculus]

Protein Classification

LDL receptor domain-containing protein( domain architecture ID 11517102)

Low Density Lipoprotein (LDL) receptor class A domain is a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
 319-454 1.33e-43

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


:

Pssm-ID: 214473  Cd Length: 229  Bit Score: 152.83  E-value: 1.33e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   319 RIVGGALTSESKWPWQVSLHF-GTTHICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPEA--ASISQII 395
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCV---RGSDPSNIRVRLGSHDLSSGEEGqvIKVSKVI 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520   396 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETD 454
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGA 136
SRCR_2 pfam15494
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ...
 225-315 3.34e-29

Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.


:

Pssm-ID: 464747  Cd Length: 99  Bit Score: 110.11  E-value: 3.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  225 WDKSLLKVYSGSSGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAHRDITSSF-------LLSEYNTTIQESLY-RS 296
Cdd:pfam15494   1 GENFLLQVYSSARPSWLPVCSDDWNPAYGRAACQQLGYLRLTHHKSVNLTDISSNSsqsfmklNSSSLNTDLYEALQpRD 80

                          90
                  ....*....|....*....
gi 755528520  297 QCPSRRYVSLQCSHCGLRA 315
Cdd:pfam15494  81 SCSSGSVVSLRCSECGLRS 99
PHA03378 super family cl33729
EBNA-3B; Provisional
 6-122 1.49e-11

EBNA-3B; Provisional


The actual alignment was detected with superfamily member PHA03378:

Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 66.63  E-value: 1.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   6 HRNSSPARTPPQAS-PARTSPARA-PPQASPAR-TPPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPsrss 81
Cdd:PHA03378 671 HIPYQPSPTGANTMlPIQWAPGTMqPPPRAPTPmRPPAAPPGRAqRPAAATGRARPPAAAPGRARPPAAAPGRARP---- 746

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 755528520  82 sgrsssarsasTTSSPTRVYLVRATPVGAVPIRASPARSAP 122
Cdd:PHA03378 747 -----------PAAAPGRARPPAAAPGRARPPAAAPGAPTP 776
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 204-220 4.98e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


:

Pssm-ID: 238060  Cd Length: 35  Bit Score: 34.49  E-value: 4.98e-03
                         10
                 ....*....|....*..
gi 755528520 204 RCDGVVDCKMKSDELGC 220
Cdd:cd00112   19 VCDGEDDCGDGSDEENC 35
 
Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
 319-454 1.33e-43

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 152.83  E-value: 1.33e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   319 RIVGGALTSESKWPWQVSLHF-GTTHICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPEA--ASISQII 395
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCV---RGSDPSNIRVRLGSHDLSSGEEGqvIKVSKVI 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520   396 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETD 454
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGA 136
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
 320-453 9.21e-42

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 148.19  E-value: 9.21e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520 320 IVGGALTSESKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPE---AASISQII 395
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYTGgRHFCGGSLISPRWVLTAAHCV---YSSAPSNYTVRLGSHDLSSNEGggqVIKVKKVI 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520 396 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKET 453
Cdd:cd00190   78 VHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEG 135
Trypsin pfam00089
Trypsin;
320-452 8.65e-33

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 123.71  E-value: 8.65e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  320 IVGGALTSESKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtreKLLEGWKVYAGTSNLHQLPEA---ASISQII 395
Cdd:pfam00089   1 IVGGDEAQPGSFPWQVSLQLSSgKHFCGGSLISENWVLTAAHCV-----SGASDVKVVLGAHNIVLREGGeqkFDVEKII 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520  396 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKE 452
Cdd:pfam00089  76 VHPNYNPDTLDNDIALLKLESPVTLGDTVRPICLPDASSDLPVGTTCTVSGWGNTKT 132
SRCR_2 pfam15494
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ...
 225-315 3.34e-29

Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.


Pssm-ID: 464747  Cd Length: 99  Bit Score: 110.11  E-value: 3.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  225 WDKSLLKVYSGSSGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAHRDITSSF-------LLSEYNTTIQESLY-RS 296
Cdd:pfam15494   1 GENFLLQVYSSARPSWLPVCSDDWNPAYGRAACQQLGYLRLTHHKSVNLTDISSNSsqsfmklNSSSLNTDLYEALQpRD 80

                          90
                  ....*....|....*....
gi 755528520  297 QCPSRRYVSLQCSHCGLRA 315
Cdd:pfam15494  81 SCSSGSVVSLRCSECGLRS 99
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
 311-454 7.17e-29

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 114.36  E-value: 7.17e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520 311 CGLRAMTGRIVGGALTSESKWPWQVSLHF---GTTHICGGTLIDAQWVLTAAHCFFvtrEKLLEGWKVYAGTSNLH-QLP 386
Cdd:COG5640   22 APAADAAPAIVGGTPATVGEYPWMVALQSsngPSGQFCGGTLIAPRWVLTAAHCVD---GDGPSDLRVVIGSTDLStSGG 98

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520 387 EAASISQIIINGNYTDEQDDYDIALIRLSKPLTLSAhihPACLPMHGQTFGLNETCWITGFGKTKETD 454
Cdd:COG5640   99 TVVKVARIVVHPDYDPATPGNDIALLKLATPVPGVA---PAPLATSADAAAPGTPATVAGWGRTSEGP 163
PHA03378 PHA03378
EBNA-3B; Provisional
 6-122 1.49e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 66.63  E-value: 1.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   6 HRNSSPARTPPQAS-PARTSPARA-PPQASPAR-TPPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPsrss 81
Cdd:PHA03378 671 HIPYQPSPTGANTMlPIQWAPGTMqPPPRAPTPmRPPAAPPGRAqRPAAATGRARPPAAAPGRARPPAAAPGRARP---- 746

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 755528520  82 sgrsssarsasTTSSPTRVYLVRATPVGAVPIRASPARSAP 122
Cdd:PHA03378 747 -----------PAAAPGRARPPAAAPGRARPPAAAPGAPTP 776
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
 237-310 7.71e-08

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 50.03  E-value: 7.71e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755528520   237 SGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAH-RDITSSFLLSEYNTTIQE-SLyrSQCPSRRYVSLQCSH 310
Cdd:smart00202  19 NGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYfGPGSGPIWLDNVRCSGTEaSL--SDCPHSGWGSHNCSH 92
SPATA3 pfam15662
Spermatogenesis-associated protein 3 family; The SPATA3 family of proteins is expressed ...
 8-77 9.65e-05

Spermatogenesis-associated protein 3 family; The SPATA3 family of proteins is expressed significantly in testis and faintly in epididymis in the ten tissues of testis, ovary, spleen, kidney, lung, heart, brain, epididymis, liver and skeletal muscle in mouse. Members are not expressed in the eight other tissues. This suggests that SPATA3 plays potential roles in spermatogenesis cell apoptosis or spermatogenesis.


Pssm-ID: 434837 [Multi-domain]  Cd Length: 190  Bit Score: 43.03  E-value: 9.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520    8 NSSPARTPPQASPARTSPARAPPQASPArTPPQASPTRTPPQASPARAPPPQASPARAS--PARASLARAPP 77
Cdd:pfam15662  25 ESTPQQPSSESAPQQPSPESTPQQPSPS-TTPQPSSESTPQQPASQALPAPEIRHSSRCllPPDPNTKAAPP 95
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 4-73 1.25e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.03  E-value: 1.25e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755528520    4 GSHRNSSPARTPPQA-SPARTSPARAPPQASPArtPPQASPTRTPPQ---ASPARAPPPQASPARASPARASLA 73
Cdd:TIGR00601  80 GTGKVAPPAATPTSApTPTPSPPASPASGMSAA--PASAVEEKSPSEesaTATAPESPSTSVPSSGSDAASTLV 151
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 24-77 1.54e-03

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 38.99  E-value: 1.54e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 755528520  24 SPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:COG3147    3 EEAAAAPAAAAAPAAPAAAAAPAPAAAAAAAAPKPAAKPAAPKPAAAAAAAPAA 56
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 1-76 4.80e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.22  E-value: 4.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   1 MDRGSHRNSSPARTPPQAS--PARTSPARAPPQASPARTPPQASPTRTPPQA--SPARAPPPQASPARASPARASLARAP 76
Cdd:NF041121  15 MGRAAAPPSPEGPAPTAASqpATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYpgSLAPPPPPPPGPAGAAPGAALPVRVP 94
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 204-220 4.98e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 34.49  E-value: 4.98e-03
                         10
                 ....*....|....*..
gi 755528520 204 RCDGVVDCKMKSDELGC 220
Cdd:cd00112   19 VCDGEDDCGDGSDEENC 35
 
Name Accession Description Interval E-value
Tryp_SPc smart00020
Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens ...
 319-454 1.33e-43

Trypsin-like serine protease; Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.


Pssm-ID: 214473  Cd Length: 229  Bit Score: 152.83  E-value: 1.33e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   319 RIVGGALTSESKWPWQVSLHF-GTTHICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPEA--ASISQII 395
Cdd:smart00020   1 RIVGGSEANIGSFPWQVSLQYgGGRHFCGGSLISPRWVLTAAHCV---RGSDPSNIRVRLGSHDLSSGEEGqvIKVSKVI 77

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520   396 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKETD 454
Cdd:smart00020  78 IHPNYNPSTYDNDIALLKLKEPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGA 136
Tryp_SPc cd00190
Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens ...
 320-453 9.21e-42

Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.


Pssm-ID: 238113 [Multi-domain]  Cd Length: 232  Bit Score: 148.19  E-value: 9.21e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520 320 IVGGALTSESKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtREKLLEGWKVYAGTSNLHQLPE---AASISQII 395
Cdd:cd00190    1 IVGGSEAKIGSFPWQVSLQYTGgRHFCGGSLISPRWVLTAAHCV---YSSAPSNYTVRLGSHDLSSNEGggqVIKVKKVI 77

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520 396 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKET 453
Cdd:cd00190   78 VHPNYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEG 135
Trypsin pfam00089
Trypsin;
320-452 8.65e-33

Trypsin;


Pssm-ID: 459667 [Multi-domain]  Cd Length: 219  Bit Score: 123.71  E-value: 8.65e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  320 IVGGALTSESKWPWQVSLHFGT-THICGGTLIDAQWVLTAAHCFfvtreKLLEGWKVYAGTSNLHQLPEA---ASISQII 395
Cdd:pfam00089   1 IVGGDEAQPGSFPWQVSLQLSSgKHFCGGSLISENWVLTAAHCV-----SGASDVKVVLGAHNIVLREGGeqkFDVEKII 75

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520  396 INGNYTDEQDDYDIALIRLSKPLTLSAHIHPACLPMHGQTFGLNETCWITGFGKTKE 452
Cdd:pfam00089  76 VHPNYNPDTLDNDIALLKLESPVTLGDTVRPICLPDASSDLPVGTTCTVSGWGNTKT 132
SRCR_2 pfam15494
Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain ...
 225-315 3.34e-29

Scavenger receptor cysteine-rich domain; SRCR_2 is a scavenger receptor cysteine-rich domain family found largely on vertebrate sequences up-stream of the trypsin-like transmembrane serine protease, Spinesin.


Pssm-ID: 464747  Cd Length: 99  Bit Score: 110.11  E-value: 3.34e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  225 WDKSLLKVYSGSSGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAHRDITSSF-------LLSEYNTTIQESLY-RS 296
Cdd:pfam15494   1 GENFLLQVYSSARPSWLPVCSDDWNPAYGRAACQQLGYLRLTHHKSVNLTDISSNSsqsfmklNSSSLNTDLYEALQpRD 80

                          90
                  ....*....|....*....
gi 755528520  297 QCPSRRYVSLQCSHCGLRA 315
Cdd:pfam15494  81 SCSSGSVVSLRCSECGLRS 99
COG5640 COG5640
Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, ...
 311-454 7.17e-29

Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 444365 [Multi-domain]  Cd Length: 262  Bit Score: 114.36  E-value: 7.17e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520 311 CGLRAMTGRIVGGALTSESKWPWQVSLHF---GTTHICGGTLIDAQWVLTAAHCFFvtrEKLLEGWKVYAGTSNLH-QLP 386
Cdd:COG5640   22 APAADAAPAIVGGTPATVGEYPWMVALQSsngPSGQFCGGTLIAPRWVLTAAHCVD---GDGPSDLRVVIGSTDLStSGG 98

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520 387 EAASISQIIINGNYTDEQDDYDIALIRLSKPLTLSAhihPACLPMHGQTFGLNETCWITGFGKTKETD 454
Cdd:COG5640   99 TVVKVARIVVHPDYDPATPGNDIALLKLATPVPGVA---PAPLATSADAAAPGTPATVAGWGRTSEGP 163
PHA03378 PHA03378
EBNA-3B; Provisional
 6-122 1.49e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 66.63  E-value: 1.49e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   6 HRNSSPARTPPQAS-PARTSPARA-PPQASPAR-TPPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPsrss 81
Cdd:PHA03378 671 HIPYQPSPTGANTMlPIQWAPGTMqPPPRAPTPmRPPAAPPGRAqRPAAATGRARPPAAAPGRARPPAAAPGRARP---- 746

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 755528520  82 sgrsssarsasTTSSPTRVYLVRATPVGAVPIRASPARSAP 122
Cdd:PHA03378 747 -----------PAAAPGRARPPAAAPGRARPPAAAPGAPTP 776
PHA03378 PHA03378
EBNA-3B; Provisional
 11-131 1.98e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 66.24  E-value: 1.98e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  11 PARTPPQASPARTSPARAPPQASPART----PPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPSRSSSGRS 85
Cdd:PHA03378 655 PQVEITPYKPTWTQIGHIPYQPSPTGAntmlPIQWAPGTMqPPPRAPTPMRPPAAPPGRAQRPAAATGRARPPAAAPGRA 734

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 755528520  86 SSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PHA03378 735 RPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPP 780
PHA03378 PHA03378
EBNA-3B; Provisional
 7-136 3.64e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 65.47  E-value: 3.64e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   7 RNSSPARTPPQASPARTSPARA-PPQASPART-PPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPsrSSSG 83
Cdd:PHA03378 693 TMQPPPRAPTPMRPPAAPPGRAqRPAAATGRArPPAAAPGRArPPAAAPGRARPPAAAPGRARPPAAAPGRARP--PAAA 770

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755528520  84 RSSSARSASTTSSPTRVYLVRATPVGAVPIRASParsAPATRATRESPGLSFP 136
Cdd:PHA03378 771 PGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGP---TSMQLMPRAAPGQQGP 820
PHA03378 PHA03378
EBNA-3B; Provisional
 9-131 8.41e-11

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 64.32  E-value: 8.41e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   9 SSPARTPPQASPARTSPARaPPQASPART-PPQASPTR-TPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSS 86
Cdd:PHA03378 667 TQIGHIPYQPSPTGANTML-PIQWAPGTMqPPPRAPTPmRPPAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRAR 745

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 755528520  87 SARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PHA03378 746 PPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRP 790
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
4-131 1.39e-10

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 63.36  E-value: 1.39e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   4 GSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASParAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PRK12323 367 QSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAA--ARAVAAAPARRSPAPEALAAARQASARGP 444

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 755528520  84 RSSSARSASTTssptrvylvrATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK12323 445 GGAPAPAPAPA----------AAPAAAARPAAAGPRPVAAAAAAAPAR 482
PHA03378 PHA03378
EBNA-3B; Provisional
 7-129 1.47e-10

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 63.55  E-value: 1.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   7 RNSSPARtPPQASPARTSPARA------PPQASPART-PPQASPTRT-PPQASPARAPPPQASPARASPARASLARAPPS 78
Cdd:PHA03378 699 RAPTPMR-PPAAPPGRAQRPAAatgrarPPAAAPGRArPPAAAPGRArPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQ 777

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 755528520  79 RSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPiRASPARSAPATRATRE 129
Cdd:PHA03378 778 PPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMP-RAAPGQQGPTKQILRQ 827
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 3-147 6.69e-10

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 61.27  E-value: 6.69e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   3 RGSHRNSSPARTPPQASPARTSPARAPPqasPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSS 82
Cdd:PRK14951 367 AAAAEAAAPAEKKTPARPEAAAPAAAPV---AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPA 443

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755528520  83 GRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPA-TRATRESPGLsfpkfSWQETQRQL 147
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAaARLTPTEEGD-----VWHATVQQL 504
PHA03378 PHA03378
EBNA-3B; Provisional
 12-136 1.58e-09

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 60.47  E-value: 1.58e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  12 ARTPPQASPARTSPARA------PPQASPART-PPQASPTRT-PPQASPARAPPPQASPARASPARAslARAPPSRSSSG 83
Cdd:PHA03378 713 RAQRPAAATGRARPPAAapgrarPPAAAPGRArPPAAAPGRArPPAAAPGRARPPAAAPGAPTPQPP--PQAPPAPQQRP 790

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755528520  84 RSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PHA03378 791 RGAPTPQPPPQAGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKP 843
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
3-151 2.59e-09

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 59.50  E-value: 2.59e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   3 RGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTrTPPQASPARAPPPQAS---------PARASPARASLA 73
Cdd:PRK12323 437 RQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAA-APARAAPAAAPAPADDdpppweelpPEFASPAPAQPD 515

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520  74 RAPPSRSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFPKfSWQETQRQLPLIG 151
Cdd:PRK12323 516 AAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG-DWPALAARLPVRG 592
eMpr COG3591
V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, ...
 340-419 7.82e-09

V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 442810 [Multi-domain]  Cd Length: 194  Bit Score: 55.45  E-value: 7.82e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520 340 GTTHICGGTLIDAQWVLTAAHCFF-VTREKLLEGWKVYAGTSNLHqlPEAASISQIIINGNYTDEQD-DYDIALIRLSKP 417
Cdd:COG3591    9 GGGGVCTGTLIGPNLVLTAGHCVYdGAGGGWATNIVFVPGYNGGP--YGTATATRFRVPPGWVASGDaGYDYALLRLDEP 86


                 ..
gi 755528520 418 LT 419
Cdd:COG3591   87 LG 88
PHA03247 PHA03247
large tegument protein UL36; Provisional
 9-131 1.99e-08

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 56.87  E-value: 1.99e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    9 SSPARTPPQASPARTSPARAPPQASPARTPPQA----SPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGR 84
Cdd:PHA03247 2755 ARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAvaslSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA 2834

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 755528520   85 SSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PHA03247 2835 QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARP 2881
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
 237-310 7.71e-08

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 50.03  E-value: 7.71e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755528520   237 SGEWLPVCSSSWNDTDSKRTCQQLGFDSAYRTTEVAH-RDITSSFLLSEYNTTIQE-SLyrSQCPSRRYVSLQCSH 310
Cdd:smart00202  19 NGQWGTVCDDGWDLRDANVVCRQLGFGGAVSASGSAYfGPGSGPIWLDNVRCSGTEaSL--SDCPHSGWGSHNCSH 92
PHA03378 PHA03378
EBNA-3B; Provisional
 7-132 9.24e-08

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 54.69  E-value: 9.24e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   7 RNSSPARTPPQASPARTSPARA-PPQASPART-PPQASPTRT-PPQASPARA---PPPQASPA-----RASPARASLARA 75
Cdd:PHA03378 723 RARPPAAAPGRARPPAAAPGRArPPAAAPGRArPPAAAPGRArPPAAAPGAPtpqPPPQAPPApqqrpRGAPTPQPPPQA 802

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520  76 PPSRSSSGRSSSARSASTTSSPTRVYLVRATPVG--AVPIRASPARSAPAtrATRESPG 132
Cdd:PHA03378 803 GPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGrpSLKKPAALERQAAA--GPTPSPG 859
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 4-130 1.08e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 54.22  E-value: 1.08e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   4 GSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PRK07764 389 GGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP 468

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 755528520  84 RSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRES 130
Cdd:PRK07764 469 APAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER 515
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 3-123 1.80e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 53.45  E-value: 1.80e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   3 RGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASptRTPPQASPARAPPPQASPARASPARASLARAPPSRSSS 82
Cdd:PRK07764 384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAP--APAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAA 461

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 755528520  83 GRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPA 123
Cdd:PRK07764 462 PSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAA 502
PHA03247 PHA03247
large tegument protein UL36; Provisional
 5-124 2.30e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.79  E-value: 2.30e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    5 SHRNSSPART-PPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PHA03247 2727 AARQASPALPaAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPAD 2806

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 755528520   84 RSSSARSASTTSSPTrvylvrATPVGAVPIRASPARSAPAT 124
Cdd:PHA03247 2807 PPAAVLAPAAALPPA------ASPAGPLPPPTSAQPTAPPP 2841
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
11-77 3.01e-07

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 52.86  E-value: 3.01e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520  11 PARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK14971 393 SAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIP 459
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 8-77 4.00e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 52.59  E-value: 4.00e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPA 109
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 7-124 5.24e-07

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 52.30  E-value: 5.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   7 RNSSPARTPPQASPARTSPARAPPQASPARTPPQ-ASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRS 85
Cdd:PRK07764 383 RRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAApAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP 462

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 755528520  86 SSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPAT 124
Cdd:PRK07764 463 SAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 29-136 8.28e-07

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 51.25  E-value: 8.28e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  29 PPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSASTTSSPTRVylVRATPV 108
Cdd:PRK14951 366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAA--PAAAPA 443

                         90       100       110
                 ....*....|....*....|....*....|
gi 755528520 109 GAVPIRASPARSAPATRAT--RESPGLSFP 136
Cdd:PRK14951 444 AVALAPAPPAQAAPETVAIpvRVAPEPAVA 473
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 9-77 1.12e-06

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 49.86  E-value: 1.12e-06
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTrTPPQASPArAPPPQASPARASPARA---SLARAPP 77
Cdd:PHA02682  80 SPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPA-CPPATAPT-CPPPAVCPAPARPAPAcppSTRQCPP 149
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
11-133 1.15e-06

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 51.00  E-value: 1.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  11 PARTPP-QASPARTSPARAP-PQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PRK07003 427 PAAPAPpATADRGDDAADGDaPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAA 506

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 755528520  89 RSASTTSSPTRVYLVRATPVGAVPIRAS--PARSAPATRATRESPGL 133
Cdd:PRK07003 507 VPDARAPAAASREDAPAAAAPPAPEARPptPAAAAPAARAGGAAAAL 553
PHA03247 PHA03247
large tegument protein UL36; Provisional
 12-131 1.28e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.09  E-value: 1.28e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   12 ARTPPQASPAR--TSPARAPPQASPARTP-PQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PHA03247 2655 DPAPGRVSRPRraRRLGRAAQASSPPQRPrRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPA 2734

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 755528520   89 RSASTTSSPTRVylVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PHA03247 2735 LPAAPAPPAVPA--GPATPGGPARPARPPTTAGPPAPAPPAAP 2775
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 16-77 1.77e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 50.66  E-value: 1.77e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520   16 PQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAP 99
PHA03247 PHA03247
large tegument protein UL36; Provisional
 4-140 4.15e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 4.15e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    4 GSHRNSSPARTPPQASPARTSP-----ARAPPQASP---ARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PHA03247 2860 GDVRRRPPSRSPAAKPAAPARPpvrrlARPAVSRSTesfALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755528520   76 PPSRSSSGRSSSARSASTTSS--------PTRVYLVRATPVGAVPIRASPARSAPaTRATRESPGLSfpkfSW 140
Cdd:PHA03247 2940 QPPLAPTTDPAGAGEPSGAVPqpwlgalvPGRVAVPRFRVPQPAPSREAPASSTP-PLTGHSLSRVS----SW 3007
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 17-131 4.26e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.21  E-value: 4.26e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  17 QASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSASTTSS 96
Cdd:PRK07764 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 755528520  97 PTrvylvrATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07764 466 PA------PAPAAAPEPTAAPAPAPPAAPAPAAAP 494
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 4-131 4.30e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 49.21  E-value: 4.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   4 GSHRNSSPARTPPQASPARTSPAraPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PRK07764 654 PKHVAVPDASDGGDGWPAKAGGA--APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*...
gi 755528520  84 RSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07764 732 SPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 10-77 7.05e-06

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 48.20  E-value: 7.05e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520  10 SPARTPPQASPARTSPARAPPQASpARTPPQASPTRtPPQASPARAPPPqaSPARASPARASLARAPP 77
Cdd:PRK14965 381 APAPPSAAWGAPTPAAPAAPPPAA-APPVPPAAPAR-PAAARPAPAPAP--PAAAAPPARSADPAAAA 444
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
 238-310 7.92e-06

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 459844  Cd Length: 98  Bit Score: 44.29  E-value: 7.92e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520  238 GEWLPVCSSSWNDTDSKRTCQQLGFDSA---YRTTEVAHRDITSSFLLSEYNTTIQE-SLyrSQCPSRRYVSLQCSH 310
Cdd:pfam00530  15 GSWGTVCDDGWDLRDAHVVCRQLGCGGAvsaPSGCSYFGPGSTGPIWLDDVRCSGNEtSL--WQCPHRPWGNHNCSH 89
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
12-136 1.41e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.54  E-value: 1.41e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  12 ARTPPQASPARTSPARAPPqASPArtPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSA 91
Cdd:PRK07003 409 ALAPKAAAAAAATRAEAPP-AAPA--PPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520  92 STTSSPTRVYLVRATPVGAVPIR------------ASPARSAPATRATRESPGLSFP 136
Cdd:PRK07003 486 PDAAFEPAPRAAAPSAATPAAVPdarapaaasredAPAAAAPPAPEARPPTPAAAAP 542
PRK14950 PRK14950
DNA polymerase III subunits gamma and tau; Provisional
 8-148 1.94e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237864 [Multi-domain]  Cd Length: 585  Bit Score: 47.11  E-value: 1.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   8 NSSPARTPPQASPARTSPARapPQASPArTPPQASPTRTPPQASPARAPPPQASPArASPARASLARAPPSRSSSGRSss 87
Cdd:PRK14950 361 VPVPAPQPAKPTAAAPSPVR--PTPAPS-TRPKAAAAANIPPKEPVRETATPPPVP-PRPVAPPVPHTPESAPKLTRA-- 434

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520  88 arsasttssptrvylvrATPVGAVPIRASPARSAPATRATRESPG-LSFPKFSWQETQRQLP 148
Cdd:PRK14950 435 -----------------AIPVDEKPKYTPPAPPKEEEKALIADGDvLEQLEAIWKQILRDVP 479
PHA03247 PHA03247
large tegument protein UL36; Provisional
 3-136 2.03e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 2.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    3 RGSHRNSSPARTP-PQASPARTSPARAPPQASP----ARTPPQ-ASPTRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:PHA03247 2662 SRPRRARRLGRAAqASSPPQRPRRRAARPTVGSltslADPPPPpPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755528520   77 PSRSSSGRS----SSARSASTTSSPTRVYLVRAtPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PHA03247 2742 PAVPAGPATpggpARPARPPTTAGPPAPAPPAA-PAAGPPRRLTRPAVASLSESRESLPSPWDP 2804
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
4-131 2.27e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.77  E-value: 2.27e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   4 GSHRNSSPARTPPQASPARTSPARAppQASPARTPPQASPTR--TPPQASPARAPPPQASPARASPARASLARAPPSRSS 81
Cdd:PRK07003 369 GGGVPARVAGAVPAPGARAAAAVGA--SAVPAVTAVTGAAGAalAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGD 446

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 755528520  82 SGRSSSARSASTTssPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07003 447 APVPAKANARASA--DSRCDERDAQPPADSGSASAPASDAPPDAAFEPAP 494
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 1-132 2.44e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 46.90  E-value: 2.44e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   1 MDRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASP-TRTPPQASPARAPPPQASPARASPARASLARAPPSR 79
Cdd:PRK07764 663 SDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPaATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLP 742

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755528520  80 SSSGRSSSARSASTTSSPTRVyLVRATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PRK07764 743 PEPDDPPDPAGAPAQPPPPPA-PAPAAAPAAAPPPSPPSEEEEMAEDDAPSMD 794
PHA03247 PHA03247
large tegument protein UL36; Provisional
 2-133 2.94e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 2.94e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    2 DRGSHRNSSPARTPPQASPARTSPARAP---------PQASPARTPPQASPTRTPPQASPARAPPPQASPARAS--PARA 70
Cdd:PHA03247 2604 DRGDPRGPAPPSPLPPDTHAPDPPPPSPspaanepdpHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASspPQRP 2683

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520   71 SLARAPPSRSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRAS----PARSAPATRATRESPGL 133
Cdd:PHA03247 2684 RRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARqaspALPAAPAPPAVPAGPAT 2750
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
10-136 3.09e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.38  E-value: 3.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  10 SPARTPPQASPARTSPARAPPQASPAR--TPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSS 87
Cdd:PRK07003 382 APGARAAAAVGASAVPAVTAVTGAAGAalAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADS 461

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
gi 755528520  88 ARSASTTSSPTRVyLVRATPVGAVPiraSPARSAPATRATRESPGLSFP 136
Cdd:PRK07003 462 RCDERDAQPPADS-GSASAPASDAP---PDAAFEPAPRAAAPSAATPAA 506
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 9-77 3.58e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 46.01  E-value: 3.58e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755528520   9 SSPARTPPQASPARTSPARAP---PQASPARTPPQASPTRTPPQASPARAPPPQASPA---RASPARASLARAPP 77
Cdd:PRK07994 387 PTAAVAPPQAPAVPPPPASAPqqaPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPAaasRARPVNSALERLAS 461
flhF PRK06995
flagellar biosynthesis protein FlhF;
8-148 5.10e-05

flagellar biosynthesis protein FlhF;


Pssm-ID: 235904 [Multi-domain]  Cd Length: 484  Bit Score: 45.34  E-value: 5.10e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   8 NSSPARTPPQASPARTSPARAPPQaspARTPPQASPTRtpPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSS 87
Cdd:PRK06995  73 VSRPAAPAAEPAPWLVEHAKRLTA---QREQLVARAAA--PAAPEAQAPAAPAERAAAENAARRLARAAAAAPRPRVPAD 147

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755528520  88 ARSASTTSSPTRVYLVRATPVGAvPIRasparsapATRATRESpglSFPKFSWQETQRQLP 148
Cdd:PRK06995 148 AAAAVADAVKARIERIVNDTVMQ-ELR--------SLRGMLEE---QLASLAWGERQRRDP 196
PHA02682 PHA02682
ORF080 virion core protein; Provisional
 7-77 5.25e-05

ORF080 virion core protein; Provisional


Pssm-ID: 177464 [Multi-domain]  Cd Length: 280  Bit Score: 44.85  E-value: 5.25e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755528520   7 RNSSPARTPPQASPARTSPARAPPqasparTPPQASPTRTPPQASPARAPPPQASParasPARASLARAPP 77
Cdd:PHA02682  92 APACPACAPAAPAPAVTCPAPAPA------CPPATAPTCPPPAVCPAPARPAPACP----PSTRQCPPAPP 152
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 9-131 6.13e-05

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 45.24  E-value: 6.13e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   9 SSPARTPPQASPARTSPARAPPQASPArtPPQASPTRTPPQASPAraPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PRK07994 370 VPPQSAAPAASAQATAAPTAAVAPPQA--PAVPPPPASAPQQAPA--VPLPETTSQLLAARQQLQRAQGATKAKKSEPAA 445

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 755528520  89 RsasttssptrvylVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07994 446 A-------------SRARPVNSALERLASVRPAPSALEKAPAK 475
PHA03247 PHA03247
large tegument protein UL36; Provisional
 11-132 7.48e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 7.48e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   11 PARTPPQASPARTSPARAPPQASP--------AR-----TPPQASPTRTP------PQASPARAPPPQASPARASPARAS 71
Cdd:PHA03247 2552 PPPLPPAAPPAAPDRSVPPPRPAPrpsepavtSRarrpdAPPQSARPRAPvddrgdPRGPAPPSPLPPDTHAPDPPPPSP 2631

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520   72 LARA-PPSRSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PHA03247 2632 SPAAnEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVG 2693
SPATA3 pfam15662
Spermatogenesis-associated protein 3 family; The SPATA3 family of proteins is expressed ...
 8-77 9.65e-05

Spermatogenesis-associated protein 3 family; The SPATA3 family of proteins is expressed significantly in testis and faintly in epididymis in the ten tissues of testis, ovary, spleen, kidney, lung, heart, brain, epididymis, liver and skeletal muscle in mouse. Members are not expressed in the eight other tissues. This suggests that SPATA3 plays potential roles in spermatogenesis cell apoptosis or spermatogenesis.


Pssm-ID: 434837 [Multi-domain]  Cd Length: 190  Bit Score: 43.03  E-value: 9.65e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520    8 NSSPARTPPQASPARTSPARAPPQASPArTPPQASPTRTPPQASPARAPPPQASPARAS--PARASLARAPP 77
Cdd:pfam15662  25 ESTPQQPSSESAPQQPSPESTPQQPSPS-TTPQPSSESTPQQPASQALPAPEIRHSSRCllPPDPNTKAAPP 95
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 2-77 1.06e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 44.71  E-value: 1.06e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520   2 DRGSHRNSSPARTPPQASPARTSPAR--APPQASPARTPPQASPTRTPPQASPARAPP-PQASPARASPARASLARAPP 77
Cdd:PRK14951 400 APAPAAAPAAAASAPAAPPAAAPPAPvaAPAAAAPAAAPAAAPAAVALAPAPPAQAAPeTVAIPVRVAPEPAVASAAPA 478
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 9-146 1.11e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 44.59  E-value: 1.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PRK07764 595 AGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520  89 RSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFPKFSWQETQRQ 146
Cdd:PRK07764 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPS 732
PHA03247 PHA03247
large tegument protein UL36; Provisional
 9-99 1.14e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 1.14e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    9 SSPARTPPQASPARTSPARAPPQASP-ARTP------------PQASPTRTPPQAsPARAPPPQASPARASPARASLARA 75
Cdd:PHA03247  369 SAGRHHPKRASLPTRKRRSARHAATPfARGPggddqtrpaapvPASVPTPAPTPV-PASAPPPPATPLPSAEPGSDDGPA 447

                          90       100
                  ....*....|....*....|....
gi 755528520   76 PPSRSSSGRSSSARSASTTSSPTR 99
Cdd:PHA03247  448 PPPERQPPAPATEPAPDDPDDATR 471
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 10-75 1.18e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 44.35  E-value: 1.18e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755528520  10 SPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PRK14965 392 PTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRAFVAFV 457
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 10-62 1.20e-04

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 43.67  E-value: 1.20e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520  10 SPARTPPQASPARTSPArAPPQASPARTPPQASPTRTPPQASPARAP----PPQASP 62
Cdd:PLN02983 148 APVVMMQPPPPHAMPPA-SPPAAQPAPSAPASSPPPTPASPPPAKAPksshPPLKSP 203
PRK14971 PRK14971
DNA polymerase III subunit gamma/tau;
10-77 1.22e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237874 [Multi-domain]  Cd Length: 614  Bit Score: 44.38  E-value: 1.22e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755528520  10 SPARTPPQ-ASPARTSPArAPPQAS----PARTPPQASPTRTPPQASPARAP---PPQASPARASPARASLARAPP 77
Cdd:PRK14971 370 SGGRGPKQhIKPVFTQPA-AAPQPSaaaaASPSPSQSSAAAQPSAPQSATQPagtPPTVSVDPPAAVPVNPPSTAP 444
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2-132 1.55e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.39  E-value: 1.55e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    2 DRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSS 81
Cdd:PHA03307  114 PDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEP 193

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 755528520   82 SGRSSSARSASTTSSPTRVYLVRATPVGAVPIR--ASPARSAPATRATRESPG 132
Cdd:PHA03307  194 PPSTPPAAASPRPPRRSSPISASASSPAPAPGRsaADDAGASSSDSSSSESSG 246
kgd PRK12270
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...
 19-131 1.60e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;


Pssm-ID: 237030 [Multi-domain]  Cd Length: 1228  Bit Score: 44.11  E-value: 1.60e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   19 SPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSASTTSSPt 98
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED- 115

                          90       100       110
                  ....*....|....*....|....*....|...
gi 755528520   99 rvylvratpvGAVPIRASPARSAPATRATRESP 131
Cdd:PRK12270  116 ----------EVTPLRGAAAAVAKNMDASLEVP 138
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 2-136 1.82e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 44.01  E-value: 1.82e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    2 DRGSHRNSSP--ARTPPQASPARTSPARAPPQ----ASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PHA03307  291 PRERSPSPSPssPGSGPAPSSPRASSSSSSSResssSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPR 370

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755528520   76 PPSRSSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PHA03307  371 PSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASGAFYARYP 431
PRK10905 PRK10905
cell division protein DamX; Validated
 3-76 2.11e-04

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 43.39  E-value: 2.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   3 RGSHRNSSPARTPPQASPARTSPARA-------PPQASPARTP--PQASPTRTPPQASPARAPPPQASPARASPARASLA 73
Cdd:PRK10905 134 RNGNASRQTAKTQTAERPATTRPARKqaviepkKPQATAKTEPkpVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTA 213


                 ...
gi 755528520  74 RAP 76
Cdd:PRK10905 214 PVQ 216
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 27-131 2.31e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.82  E-value: 2.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  27 RAPPQASPARTPPQASPTRTPPQASPArapPPQASPARASPARASLARAPPSRSSSGRSSSARSASTTSSPTRVYLVRAT 106
Cdd:PRK07764 383 RRLGVAGGAGAPAAAAPSAAAAAPAAA---PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPA 459

                         90       100
                 ....*....|....*....|....*
gi 755528520 107 PVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07764 460 AAPSAQPAPAPAAAPEPTAAPAPAP 484
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 7-131 2.39e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.82  E-value: 2.39e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   7 RNSSPARTPPQASPARTSPARAPPQASPArTPPQASPTRTPPQASPARAPPPQASPARASP--ARASLARAPPSRSSSGR 84
Cdd:PRK07764 606 SGPPEEAARPAAPAAPAAPAAPAPAGAAA-APAEASAAPAPGVAAPEHHPKHVAVPDASDGgdGWPAKAGGAAPAAPPPA 684

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 755528520  85 SSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESP 131
Cdd:PRK07764 685 PAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAP 731
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 1-75 2.53e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 43.58  E-value: 2.53e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755528520   1 MDRGSHRNSSPARTPPQ-ASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARA 75
Cdd:PRK14965 377 LERGAPAPPSAAWGAPTpAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDRWRA 452
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 9-132 3.35e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 43.24  E-value: 3.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    9 SSPARTPPQASPARTS-----PARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSG 83
Cdd:PHA03307   74 GPGTEAPANESRSTPTwslstLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPP 153

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 755528520   84 RSSSARSASTTSSPTRVYLvrATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PHA03307  154 AAGASPAAVASDAASSRQA--ALPLSSPEETARAPSSPPAEPPPSTPPA 200
PHA03247 PHA03247
large tegument protein UL36; Provisional
 5-136 3.98e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 3.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    5 SHRNSSPAR-TPPQASPARTSPARAPPQASPArtPPQASPTRTPPQASPARA--PPPQASPARASPARASLARAPPSRSS 81
Cdd:PHA03247 2586 ARRPDAPPQsARPRAPVDDRGDPRGPAPPSPL--PPDTHAPDPPPPSPSPAAnePDPHPPPTVPPPERPRDDPAPGRVSR 2663

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520   82 SGRSSSARSASTTSSPTRVYLVRATPVGAVPI----RASPARSAPATRATRESPGLSFP 136
Cdd:PHA03247 2664 PRRARRLGRAAQASSPPQRPRRRAARPTVGSLtslaDPPPPPPTPEPAPHALVSATPLP 2722
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
8-77 4.46e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.91  E-value: 4.46e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755528520   8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPAR-APPPQASPARASPARASLARAPP 77
Cdd:PRK07003 473 DSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREdAPAAAAPPAPEARPPTPAAAAPA 543
PRK11855 PRK11855
dihydrolipoamide acetyltransferase; Reviewed
 14-74 4.64e-04

dihydrolipoamide acetyltransferase; Reviewed


Pssm-ID: 237000 [Multi-domain]  Cd Length: 547  Bit Score: 42.50  E-value: 4.64e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755528520  14 TPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLAR 74
Cdd:PRK11855 194 VAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKAPHASPAVRRLAR 254
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
14-77 5.61e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 42.26  E-value: 5.61e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755528520  14 TPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PRK14948 514 SGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 11-68 6.89e-04

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 42.01  E-value: 6.89e-04
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520  11 PARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPA 68
Cdd:PRK06975 268 AAAQPATAAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRGSAA 325
PHA03247 PHA03247
large tegument protein UL36; Provisional
 3-131 7.18e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 42.23  E-value: 7.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    3 RGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPqASPTRTPPQASPARAPPPQASPA-RASPARASLARAPPSRSS 81
Cdd:PHA03247 2681 QRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS-ATPLPPGPAAARQASPALPAAPApPAVPAGPATPGGPARPAR 2759

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 755528520   82 SGRSSSARSASTTSSPTRVYLVRATPVGAVPIRAS----PARSAPATRATRESP 131
Cdd:PHA03247 2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESreslPSPWDPADPPAAVLA 2813
PHA03377 PHA03377
EBNA-3C; Provisional
 14-146 7.34e-04

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 41.96  E-value: 7.34e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   14 TPPQASPARtspaRAPPQASPartPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSAST 93
Cdd:PHA03377  551 TPPKVSPSD----RGPPKASP---PVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEKQPPSSAPR 623

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 755528520   94 TSSPTRVYLVRATPVGAVPIRASPaRSAPATRATRESPGLSFPKFSWQETQRQ 146
Cdd:PHA03377  624 DMAPSVVRMFLRERLLEQSTGPKP-KSFWEMRAGRDGSGIQQEPSSRRQPATQ 675
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 15-77 7.89e-04

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 41.36  E-value: 7.89e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755528520  15 PPQASPARTSPARAPPQASPArTPPQASPtrtppqASPARAPPPQASPARASPARASLARAPP 77
Cdd:PLN02983 144 PPPPAPVVMMQPPPPHAMPPA-SPPAAQP------APSAPASSPPPTPASPPPAKAPKSSHPP 199
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 10-136 8.85e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 8.85e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   10 SPARTPPQAS-PARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSA 88
Cdd:PHA03307  164 SDAASSRQAAlPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSE 243

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 755528520   89 RSASTTSSPTRVYLVRATPVGAVPIRASPARS-APATRATRESPGLSFP 136
Cdd:PHA03307  244 SSGCGWGPENECPLPRPAPITLPTRIWEASGWnGPSSRPGPASSSSSPR 292
PRK12757 PRK12757
cell division protein FtsN; Provisional
 7-66 9.80e-04

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 40.80  E-value: 9.80e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755528520   7 RNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTP---PQASPARAPPPQASPARAS 66
Cdd:PRK12757 121 IQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQpaaPVTQAVEAPKVEAEKEKEQ 183
PRK14965 PRK14965
DNA polymerase III subunits gamma and tau; Provisional
 21-77 1.06e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237871 [Multi-domain]  Cd Length: 576  Bit Score: 41.27  E-value: 1.06e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520  21 ARTSPARAPPQASPARTPPQASP--TRTPPQASPARAPPPQASPARASPARAslARAPP 77
Cdd:PRK14965 378 ERGAPAPPSAAWGAPTPAAPAAPppAAAPPVPPAAPARPAAARPAPAPAPPA--AAAPP 434
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 7-154 1.13e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 41.25  E-value: 1.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   7 RNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTrtpPQASpaRAPPPQASPARASPARASLARAPPSRSSSgrss 86
Cdd:PHA03269  38 QKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPT---PAAS--EKFDPAPAPHQAASRAPDPAVAPQLAAAP---- 108

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755528520  87 sarsasttssptrvylvraTPVGAVPIRASP-ARSAPATRATRESPGLSFPKFSWQETQ------RQLPLIGCVI 154
Cdd:PHA03269 109 -------------------KPDAAEAFTSAAqAHEAPADAGTSAASKKPDPAAHTQHSPppfaytRSMEHIACTH 164
PHA03269 PHA03269
envelope glycoprotein C; Provisional
 5-75 1.17e-03

envelope glycoprotein C; Provisional


Pssm-ID: 165527 [Multi-domain]  Cd Length: 566  Bit Score: 41.25  E-value: 1.17e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520   5 SHRNSSPARTPPQASPARTSPARAP-PQAS----PARTPPQASPTRTPPQASP--ARAPPPQASPARASPARASLARA 75
Cdd:PHA03269  50 ASRAPDPAVAPTSAASRKPDLAQAPtPAASekfdPAPAPHQAASRAPDPAVAPqlAAAPKPDAAEAFTSAAQAHEAPA 127
PHA03377 PHA03377
EBNA-3C; Provisional
 2-67 1.17e-03

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 41.58  E-value: 1.17e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520    2 DRGSHRNSSPARTPPQASP-ARTSPARAPPQASPARTPP--QASPTRTPPQASPARAPPPQASPARASP 67
Cdd:PHA03377  559 DRGPPKASPPVMAPPSTGPrVMATPSTGPRDMAPPSTGPrqQAKCKDGPPASGPHEKQPPSSAPRDMAP 627
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
 4-73 1.25e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 41.03  E-value: 1.25e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755528520    4 GSHRNSSPARTPPQA-SPARTSPARAPPQASPArtPPQASPTRTPPQ---ASPARAPPPQASPARASPARASLA 73
Cdd:TIGR00601  80 GTGKVAPPAATPTSApTPTPSPPASPASGMSAA--PASAVEEKSPSEesaTATAPESPSTSVPSSGSDAASTLV 151
PRK12373 PRK12373
NADH-quinone oxidoreductase subunit E;
9-76 1.25e-03

NADH-quinone oxidoreductase subunit E;


Pssm-ID: 237082 [Multi-domain]  Cd Length: 400  Bit Score: 40.94  E-value: 1.25e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPArapPPQASPARASPARASLARAP 76
Cdd:PRK12373 247 ARPKSADAETNAALKTPATAPKAAAKNAKAPEAQPVSGTAAAEPA---PKEAAKAAAAAAKPALEDKP 311
FAP pfam07174
Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...
 12-77 1.26e-03

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.


Pssm-ID: 429334  Cd Length: 301  Bit Score: 40.68  E-value: 1.26e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520   12 ARTPPQASPARTSPARAPPQASPARTPPqASPTRTPPQASP--ARAPPPQASPARASPARASLARAPP 77
Cdd:pfam07174  37 AHADPEPAPPPPSTATAPPAPPPPPPAP-AAPAPPPPPAAPnaPNAPPPPADPNAPPPPPADPNAPPP 103
DedD COG3147
Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, ...
 24-77 1.54e-03

Cell division protein DedD (periplasmic protein involved in septation) [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 442381 [Multi-domain]  Cd Length: 140  Bit Score: 38.99  E-value: 1.54e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 755528520  24 SPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:COG3147    3 EEAAAAPAAAAAPAAPAAAAAPAPAAAAAAAAPKPAAKPAAPKPAAAAAAAPAA 56
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 10-63 1.54e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 40.67  E-value: 1.54e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 755528520  10 SPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQAS-PARAPPPQASPA 63
Cdd:PRK01297  18 APAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDkPRRERKPKPASL 72
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 13-132 1.56e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 41.31  E-value: 1.56e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   13 RTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSAS 92
Cdd:PHA03307  257 LPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESS 336

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 755528520   93 TTSSPTRVYLV-------RATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PHA03307  337 RGAAVSPGPSPsrspspsRPPPPADPSSPRKRPRPSRAPSSPAASAG 383
PHA03247 PHA03247
large tegument protein UL36; Provisional
 7-136 1.58e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.08  E-value: 1.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    7 RNSSPARTPPQASPARTSPARA--PPQASPART-PPQASPTRTPPQASPARAPPPQASPARASP----ARASLARAPPSR 79
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAalPPAASPAGPlPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAK 2874

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520   80 SSSGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PHA03247 2875 PAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP 2931
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 1-130 1.77e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 1.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    1 MDRGSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPA-RAPPPQASPARASPARASLARAPPSR 79
Cdd:PHA03307   85 RSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMlRPVGSPGPPPAASPPAAGASPAAVAS 164

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 755528520   80 SSSGRSSSARSASTTSSPTRvylVRATPVGAVPIRASPARSAPATRATRES 130
Cdd:PHA03307  165 DAASSRQAALPLSSPEETAR---APSSPPAEPPPSTPPAAASPRPPRRSSP 212
PLN02983 PLN02983
biotin carboxyl carrier protein of acetyl-CoA carboxylase
 9-62 1.78e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase


Pssm-ID: 215533 [Multi-domain]  Cd Length: 274  Bit Score: 40.21  E-value: 1.78e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 755528520   9 SSPARTPPqASPARTSPARAPPQASPARTPPQASPTRT-----PPQASPA-----RAPPPQASP 62
Cdd:PLN02983 156 PPPHAMPP-ASPPAAQPAPSAPASSPPPTPASPPPAKApksshPPLKSPMagtfyRSPAPGEPP 218
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 8-123 2.26e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.54  E-value: 2.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSS 87
Cdd:PHA03307  110 GPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSP 189

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 755528520   88 ARSASTTSSPTRvyLVRATPVGAVPIRASPARSAPA 123
Cdd:PHA03307  190 PAEPPPSTPPAA--ASPRPPRRSSPISASASSPAPA 223
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 2-139 2.56e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 40.05  E-value: 2.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   2 DRGSHR----NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAP--PPQASPARASPARASLARA 75
Cdd:COG5180  325 DPGTPRpgqpTERPAGVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPfqPPNGAPQPGLGRRGAPGPP 404

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 755528520  76 PPSRSSSGRSSSARSASTTSSPT-RVYLVRATPVGAVPIRASPaRSAPAtRATRESPGLSFPKFS 139
Cdd:COG5180  405 MGAGDLVQAALDGGGRETASLGGaAGGAGQGPKADFVPGDAES-VSGPA-GLADQAGAAASTAMA 467
PRK01297 PRK01297
ATP-dependent RNA helicase RhlB; Provisional
 17-69 2.77e-03

ATP-dependent RNA helicase RhlB; Provisional


Pssm-ID: 234938 [Multi-domain]  Cd Length: 475  Bit Score: 39.90  E-value: 2.77e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755528520  17 QASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPAR 69
Cdd:PRK01297  11 KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRR 63
PRK10856 PRK10856
cytoskeleton protein RodZ;
8-63 2.80e-03

cytoskeleton protein RodZ;


Pssm-ID: 236776 [Multi-domain]  Cd Length: 331  Bit Score: 39.62  E-value: 2.80e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 755528520   8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPA 63
Cdd:PRK10856 190 QTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPTDQAGVS 245
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 23-130 2.94e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 39.97  E-value: 2.94e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  23 TSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARA----SLARAPPSRSSSGRSSSARSASTTSSPT 98
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAeasaAPAPGVAAPEHHPKHVAVPDASDGGDGW 669

                         90       100       110
                 ....*....|....*....|....*....|..
gi 755528520  99 RVYLVRATPVGAVPIRASPARSAPATRATRES 130
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQP 701
DUF1986 pfam09342
Domain of unknown function (DUF1986); This domain is found in serine proteases and is ...
 331-430 2.94e-03

Domain of unknown function (DUF1986); This domain is found in serine proteases and is predicted to contain disulphide bonds.


Pssm-ID: 286432  Cd Length: 116  Bit Score: 37.53  E-value: 2.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  331 WPWQVSLHFGTTHICGGTLIDAQWVLTAAHCFfvtrekllegWKVYAGTSNLHQLPEAASiSQIIINGNYtdEQ----DD 406
Cdd:pfam09342   1 WPWIAKVYLDGNMICSGVLIDASWVIVSGSCL----------RDTNLRHQYISVVLGGAK-TLKSIEGPY--EQivrvDC 67

                          90       100       110
                  ....*....|....*....|....*....|
gi 755528520  407 Y------DIALIRLSKPLTLSAHIHPACLP 430
Cdd:pfam09342  68 RhdipesEISLLHLASPASFSNHVLPTFVP 97
PRK12757 PRK12757
cell division protein FtsN; Provisional
 8-63 2.99e-03

cell division protein FtsN; Provisional


Pssm-ID: 237191 [Multi-domain]  Cd Length: 256  Bit Score: 39.26  E-value: 2.99e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520   8 NSSPARTPPQASPARTSPA--RAPPQASPARTPPQASPTRTPPQASPARAPPPQASPA 63
Cdd:PRK12757 119 VQIQQQAQQQQPPATTAQPqpVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAVEAPKVE 176
PHA03291 PHA03291
envelope glycoprotein I; Provisional
 9-77 3.52e-03

envelope glycoprotein I; Provisional


Pssm-ID: 223033 [Multi-domain]  Cd Length: 401  Bit Score: 39.55  E-value: 3.52e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 755528520   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPP 77
Cdd:PHA03291 206 ATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGGGEAPPANATP 274
PRK10547 PRK10547
chemotaxis protein CheA; Provisional
 15-71 3.55e-03

chemotaxis protein CheA; Provisional


Pssm-ID: 236712 [Multi-domain]  Cd Length: 670  Bit Score: 39.71  E-value: 3.55e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520  15 PPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARAS 71
Cdd:PRK10547 219 ADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVEREKTARSS 275
PHA03309 PHA03309
transcriptional regulator ICP4; Provisional
 5-76 3.64e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 165564 [Multi-domain]  Cd Length: 2033  Bit Score: 39.84  E-value: 3.64e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    5 SHRNSSPARTPPQASPARTsparAPPQASPARTPPQASPT----------RTPPQASPARAPPPQASPARASPARASLAR 74
Cdd:PHA03309 1820 SSSSSSSSSSSPSSRPSRS----ATPSLSPSPSPPRRAPVdrsrsgrrreRDRPSANPFRWAPRQRSRADHSPDGTAPGD 1895


                  ..
gi 755528520   75 AP 76
Cdd:PHA03309 1896 AP 1897
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 4-137 3.74e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.77  E-value: 3.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    4 GSHRNSSPARTPPQASPARTSPARAPPQAS-PARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSS 82
Cdd:PHA03307  163 ASDAASSRQAALPLSSPEETARAPSSPPAEpPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSS 242

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 755528520   83 GRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFPK 137
Cdd:PHA03307  243 ESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPS 297
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
11-136 4.23e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 4.23e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  11 PARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARS 90
Cdd:PRK07003 360 PAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRG 439

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 755528520  91 ASTTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PRK07003 440 DDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAP 485
PRK06549 PRK06549
acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
 24-76 4.29e-03

acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated


Pssm-ID: 235826 [Multi-domain]  Cd Length: 130  Bit Score: 37.48  E-value: 4.29e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 755528520  24 SPARAPPQASPARTPpqasptrTPPQASPARAPPPQAsPARASPARASLARAP 76
Cdd:PRK06549  23 APAQAAAPAQPASTP-------VPVPTEASPQVEAQA-PQPAAAAGADAMPSP 67
PBP1 COG5180
PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification]; ...
 15-131 4.46e-03

PAB1-binding protein, interacts with poly(A)-binding protein [RNA processing and modification];


Pssm-ID: 444064 [Multi-domain]  Cd Length: 548  Bit Score: 39.28  E-value: 4.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  15 PPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSSARSASTT 94
Cdd:COG5180  319 PPGGARDPGTPRPGQPTERPAGVPEAASDAGQPPSAYPPAEEAVPGKPLEQGAPRPGSSGGDGAPFQPPNGAPQPGLGRR 398

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 755528520  95 SSPTRVY----LVRATPVGAVPIRASPARsaPATRATRESP 131
Cdd:COG5180  399 GAPGPPMgagdLVQAALDGGGRETASLGG--AAGGAGQGPK 437
PRK06975 PRK06975
bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
 17-76 4.54e-03

bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed


Pssm-ID: 235899 [Multi-domain]  Cd Length: 656  Bit Score: 39.32  E-value: 4.54e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520  17 QASPARTSPARAPP-QASPARTPPQASPTRTPPQASPARAPPP-QASPARASPARASLARAP 76
Cdd:PRK06975 264 TWADAAAQPATAAPaPSRMTDTNDSKSVTSQPAAAAAAPAPPPnPPATPPEPPARRGRGSAA 325
motB PRK05996
MotB family protein;
4-76 4.55e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 39.30  E-value: 4.55e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 755528520   4 GSHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:PRK05996 202 GQAREQAQGAKSATAAPATVPQAAPLPQAQPKKAATEEELIADAKKAATGEPAANAAKAAKPEPMPDDQQKEA 274
Rib_recp_KP_reg pfam05104
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ...
 9-73 4.66e-03

Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.


Pssm-ID: 461548 [Multi-domain]  Cd Length: 140  Bit Score: 37.41  E-value: 4.66e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520    9 SSPARTP---PQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLA 73
Cdd:pfam05104  73 PSAALEPepvPTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
SAV_2336_NTERM NF041121
SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...
 1-76 4.80e-03

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.


Pssm-ID: 469044 [Multi-domain]  Cd Length: 473  Bit Score: 39.22  E-value: 4.80e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   1 MDRGSHRNSSPARTPPQAS--PARTSPARAPPQASPARTPPQASPTRTPPQA--SPARAPPPQASPARASPARASLARAP 76
Cdd:NF041121  15 MGRAAAPPSPEGPAPTAASqpATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYpgSLAPPPPPPPGPAGAAPGAALPVRVP 94
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 9-127 4.84e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 39.16  E-value: 4.84e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   9 SSPARTPPQASPARTSPARAP-PQASPARTPPQASPTRTPPQASPARAPPP----QASPARASPARASLARAPPSRSSSG 83
Cdd:PTZ00436 227 AAPAKAAAPPAKAAAAPAKAAaAPAKAAAPPAKAAAPPAKAAAPPAKAAAPpakaAAPPAKAAAPPAKAAAAPAKAAAAP 306

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 755528520  84 RSSSARSASTTSSPTRVylvrATPVGAVPIRASPARSAPATRAT 127
Cdd:PTZ00436 307 AKAAAAPAKAAAPPAKA----AAPPAKAATPPAKAAAPPAKAAA 346
COG5373 COG5373
Uncharacterized membrane protein [Function unknown];
9-74 4.92e-03

Uncharacterized membrane protein [Function unknown];


Pssm-ID: 444140 [Multi-domain]  Cd Length: 854  Bit Score: 39.60  E-value: 4.92e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 755528520   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLAR 74
Cdd:COG5373   44 ASAPAEPEPEAAAAATAAAPEAAPAPVPEAPAAPPAAAEAPAPAAAAPPAEAEPAAAPAAASSFEE 109
PRK14948 PRK14948
DNA polymerase III subunit gamma/tau;
8-68 4.92e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237862 [Multi-domain]  Cd Length: 620  Bit Score: 39.18  E-value: 4.92e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 755528520   8 NSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQASPARASPA 68
Cdd:PRK14948 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 13-76 4.95e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 39.16  E-value: 4.95e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 755528520  13 RTPPQASPART-SPARAPPQASPARTPPQASP--TRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:PRK14954 393 KAPEPDLPQPDrHPGPAKPEAPGARPAELPSPasAPTPEQQPPVARSAPLPPSPQASAPRNVASGKP 459
LDLa cd00112
Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central ...
 204-220 4.98e-03

Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure


Pssm-ID: 238060  Cd Length: 35  Bit Score: 34.49  E-value: 4.98e-03
                         10
                 ....*....|....*..
gi 755528520 204 RCDGVVDCKMKSDELGC 220
Cdd:cd00112   19 VCDGEDDCGDGSDEENC 35
PRK12495 PRK12495
hypothetical protein; Provisional
 9-75 5.08e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 38.31  E-value: 5.08e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPP--QASPA-RAPPPQASPARASPARASLARA 75
Cdd:PRK12495 106 AEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTaqPATPDeRRSPRQRPPVSGEPPTPSTPDA 175
PRK11633 PRK11633
cell division protein DedD; Provisional
 11-68 5.62e-03

cell division protein DedD; Provisional


Pssm-ID: 236940 [Multi-domain]  Cd Length: 226  Bit Score: 38.06  E-value: 5.62e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520  11 PARTPPQASPARTSPARAPPQASPARTPPQASPTRtPPQASPARAPPPQASPARASPA 68
Cdd:PRK11633  87 PATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKP-QQKVEAPPAPKPEPKPVVEEKA 143
motB PRK12799
flagellar motor protein MotB; Reviewed
 8-130 5.64e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 38.93  E-value: 5.64e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   8 NSSPARTPPQASPARTSPARAPpqaSPARTPPqASPTRTPPQASPARAPPPQASPARASPARASLARAPPSRSSSGRSSS 87
Cdd:PRK12799 309 AVTQSSAITPSSAAIPSPAVIP---SSVTTQS-ATTTQASAVALSSAGVLPSDVTLPGTVALPAAEPVNMQPQPMSTTET 384

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 755528520  88 ARSASTTSSPTrvylvRATPVGAVPirASPARSAPATRATRES 130
Cdd:PRK12799 385 QQSSTGNITST-----ANGPTTSLP--AAPASNIPVSPTSRDA 420
PTZ00436 PTZ00436
60S ribosomal protein L19-like protein; Provisional
 5-136 5.76e-03

60S ribosomal protein L19-like protein; Provisional


Pssm-ID: 185616 [Multi-domain]  Cd Length: 357  Bit Score: 38.78  E-value: 5.76e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   5 SHRNSSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQAS--PARAS--PARASlarAPPSRS 80
Cdd:PTZ00436 212 SGKKSAKAAAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAapPAKAAapPAKAA---APPAKA 288

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  81 SSGRSSSARSASTTSSPTRVYLVRATPVGAVPIR--ASPARSA--PATRATRESPGLSFP 136
Cdd:PTZ00436 289 AAPPAKAAAAPAKAAAAPAKAAAAPAKAAAPPAKaaAPPAKAAtpPAKAAAPPAKAAAAP 348
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
 10-77 6.03e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 460830 [Multi-domain]  Cd Length: 991  Bit Score: 39.37  E-value: 6.03e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   10 SPARTPPQASPARTSPARAP---PQASPARTPPQASP-TRTPPQASPARAPP-----------PQASPARASPARASLAR 74
Cdd:pfam03154 176 AQSGAASPPSPPPPGTTQAAtagPTPSAPSVPPQGSPaTSQPPNQTQSTAAPhtliqqtptlhPQRLPSPHPPLQPMTQP 255


                  ...
gi 755528520   75 APP 77
Cdd:pfam03154 256 PPP 258
PHA03247 PHA03247
large tegument protein UL36; Provisional
 12-123 6.26e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 6.26e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   12 ARTPPQASPARTS-PARAPPQASPARTPPQASPTRTP-----PQASPARAPPPQASPAR-ASPAR---ASLARAPPSRSS 81
Cdd:PHA03247 2816 AALPPAASPAGPLpPPTSAQPTAPPPPPGPPPPSLPLggsvaPGGDVRRRPPSRSPAAKpAAPARppvRRLARPAVSRST 2895

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 755528520   82 SGRSSSARSASTTSSPTRVYLVRATPVGAVPIRASPARSAPA 123
Cdd:PHA03247 2896 ESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPP 2937
PRK14954 PRK14954
DNA polymerase III subunits gamma and tau; Provisional
 10-77 6.53e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 184918 [Multi-domain]  Cd Length: 620  Bit Score: 38.77  E-value: 6.53e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520  10 SPARTPPQASPARTSPARAPPQASPARTPpqASPTRTPPQA-SPARAPPPQASPARASPA---RASLARAPP 77
Cdd:PRK14954 383 SPAGSPDVKKKAPEPDLPQPDRHPGPAKP--EAPGARPAELpSPASAPTPEQQPPVARSAplpPSPQASAPR 452
half-pint TIGR01645
poly-U binding splicing factor, half-pint family; The proteins represented by this model ...
 14-68 6.61e-03

poly-U binding splicing factor, half-pint family; The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.


Pssm-ID: 130706 [Multi-domain]  Cd Length: 612  Bit Score: 38.90  E-value: 6.61e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520   14 TPPQASPARTSPARAP--PQASPARTPPQ----ASPTRTPPQASPARAPPPQA-SPARASPA 68
Cdd:TIGR01645 344 NKAVVSSAKKEAEEVPplPQAAPAVVKPGpmeiPTPVPPPGLAIPSLVAPPGLvAPTEINPS 405
PHA03381 PHA03381
tegument protein VP22; Provisional
 5-77 7.24e-03

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 38.45  E-value: 7.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   5 SHRNSSPARTPPQAS-------PARTSPARAPPQASPARTPPQASPTRTP------PQASPARAPPPQASP-ARASPARA 70
Cdd:PHA03381  44 ARRGAGQARGRSQAErrfhhydEARADYPYYTGSSSEDERPADPRPSRRPhaqpeaSGPGPARGARGPAGSrGRGRRAES 123


                 ....*..
gi 755528520  71 SLARAPP 77
Cdd:PHA03381 124 PSPRDPP 130
PHA03381 PHA03381
tegument protein VP22; Provisional
 10-76 7.84e-03

tegument protein VP22; Provisional


Pssm-ID: 177618 [Multi-domain]  Cd Length: 290  Bit Score: 38.07  E-value: 7.84e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 755528520  10 SPARTPPQASPARTSPARAP-PQASPARTPPQASPTRTPPQASPARAPPPQASPARASPARASLARAP 76
Cdd:PHA03381 103 GPARGARGPAGSRGRGRRAEsPSPRDPPNPKGASAPRGRKSACADSAALLDAPAPAAPKRQKTPAGLA 170
Mif2_N pfam15624
Kinetochore CENP-C fungal homolog, Mif2, N-terminal; Mif2_N is a family of fungal proteins ...
 2-57 8.75e-03

Kinetochore CENP-C fungal homolog, Mif2, N-terminal; Mif2_N is a family of fungal proteins homologous to mammalian CENP-C. On depletion of CENP-C proper formation of both centromeres and kinetochores is prevented. The N-terminal of CENP-C is necessary for recruitment of some but not all components of the Mis12 complex of the kinetochore.


Pssm-ID: 434820  Cd Length: 134  Bit Score: 36.53  E-value: 8.75e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520    2 DRGSHRNSSPARTPPQA-SPART---SPARappqaspaRTPPQASPTRTPPQASPARAPP 57
Cdd:pfam15624  73 DLLSGRRRSPRLPPPRArSPAKTnlnSPAR--------RNPSLALDQPARPSSSPTRGAS 124
PRK12495 PRK12495
hypothetical protein; Provisional
 12-129 8.91e-03

hypothetical protein; Provisional


Pssm-ID: 183558 [Multi-domain]  Cd Length: 226  Bit Score: 37.54  E-value: 8.91e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  12 ARTPPQASPARTSPARAPPQASPARTPPQASPTRTPPQASPARAPPPQasPARASPARASLARAPPSRSSSGRSSSARSA 91
Cdd:PRK12495 100 AQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQ--PATPDERRSPRQRPPVSGEPPTPSTPDAHV 177

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 755528520  92 STTSSPTRVYLVRAtpVGAVPIRAS----PARSAPATRATRE 129
Cdd:PRK12495 178 AGTLQAARESLVET--LARFARRAAatddPRRAREYLEAARE 217
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 9-136 9.01e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 38.43  E-value: 9.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520   9 SSPARTPPQASPARTSPARAPPQASPARTPPQASPTRTP-------------PQASPARAPPP-QASPARASPARASLAR 74
Cdd:PRK07764 616 AAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPkhvavpdasdggdGWPAKAGGAAPaAPPPAPAPAAPAAPAG 695

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 755528520  75 APPSRSSSGRSSSARSASTTSSPTRvylVRATPVGAVPIRASPARSAPATRATRESPGLSFP 136
Cdd:PRK07764 696 AAPAQPAPAPAATPPAGQADDPAAQ---PPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGA 754
PRK10905 PRK10905
cell division protein DamX; Validated
 20-132 9.04e-03

cell division protein DamX; Validated


Pssm-ID: 236792 [Multi-domain]  Cd Length: 328  Bit Score: 38.00  E-value: 9.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755528520  20 PARTSPAR---APPQASPARTPPQASPTR----------TPPQASPARAPPPQASPARASPARASLARAPpsrsssgrss 86
Cdd:PRK10905 127 PATVAPVRngnASRQTAKTQTAERPATTRparkqaviepKKPQATAKTEPKPVAQTPKRTEPAAPVASTK---------- 196

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*.
gi 755528520  87 sarsastTSSPTRVYLVRATPVGAVPIRASPARSAPATRATRESPG 132
Cdd:PRK10905 197 -------APAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAG 235
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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