|
Name |
Accession |
Description |
Interval |
E-value |
| TMCO5 |
pfam14992 |
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing ... |
81-335 |
3.31e-116 |
|
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing proteins 5A and 5B.
Pssm-ID: 464427 [Multi-domain] Cd Length: 278 Bit Score: 337.07 E-value: 3.31e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 81 IISLNMDLERDMQRIDEANQELLLEIQEKENEIQRLEHEITQTGNPAEDEEWEKENYTVMEREQALQELEEETARLERKN 160
Cdd:pfam14992 1 LNSLNSDLEKDLQRLDEANQVLLLKIQEKEEEIQSLEREITLTRSLAEDEEREELNFTIMEKEDALQELELETAKLEKKN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 161 ETLVHSISELQRKLTRKSQKVIRYEQGDLETTPEESKVKLQQLESSCADQEKELG--------------------KKYQE 220
Cdd:pfam14992 81 EILVKSVMELQRKLSRKSDKNTGLEQETLKQMLEELKVKLQQSEESCADQEKELAkvesdyqsvhqlcedqalciKKYQE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 221 ALKRIEEELETGYLEREVSKVLSMDSERER---STSLNKMDGFISKGALRFSKSIFRSLLFSTLFFIRLLGYLIFHLSFI 297
Cdd:pfam14992 161 ILRKMEEEKETRLLEKEVSKAQSNSSQRVKlveTIQQNMEKTIIKKQKRIFWKRHFRYLFFMVLIFIRLLGYVLFHLQYI 240
|
250 260 270
....*....|....*....|....*....|....*...
gi 755500429 298 NPDLLVNALPKILSRDVLWKLRCFLFPSLTLETEDMLP 335
Cdd:pfam14992 241 NPDLLVDTLPKMLSRRTLWRLRCFLFPFLTLEVEDLLP 278
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
56-240 |
3.29e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 56 EQKENQLdyESEKMEILRLAQSKKNIISLNMDLERDMQRIDEANQELLLEIQEKENEIQRLEHEI-----TQTGNPAEDE 130
Cdd:TIGR04523 366 EEKQNEI--EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIerlkeTIIKNNSEIK 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 131 EWEKENYtvmEREQALQELEEETARLERKNETLVHSISELQRKLTRKSQKVIRYEQ----------------GDLETTPE 194
Cdd:TIGR04523 444 DLTNQDS---VKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkklneekkeleekvKDLTKKIS 520
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 755500429 195 ESKVKLQQLESSCADQEKELGKKYQEaLKRIEEELETGYLEREVSK 240
Cdd:TIGR04523 521 SLKEKIEKLESEKKEKESKISDLEDE-LNKDDFELKKENLEKEIDE 565
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
56-237 |
3.44e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 56 EQKENQLDYESEKMEIL--RLAQSKKNIISLNMDLERDMQRIDEANQEL------LLEIQEKENEIQRLEHEITQTGNPA 127
Cdd:COG1196 298 ARLEQDIARLEERRRELeeRLEELEEELAELEEELEELEEELEELEEELeeaeeeLEEAEAELAEAEEALLEAEAELAEA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 128 EdEEWEKENYTVMEREQALQELEEETARLERKNETLVHSISELQRKLTRKSQKVIRYEQGDLETTPEESKVKLQQLESsc 207
Cdd:COG1196 378 E-EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL-- 454
|
170 180 190
....*....|....*....|....*....|
gi 755500429 208 ADQEKELGKKYQEALKRIEEELETGYLERE 237
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLE 484
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TMCO5 |
pfam14992 |
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing ... |
81-335 |
3.31e-116 |
|
TMCO5 family; The TMCO5 family includes human transmembrane and coiled-coil domain-containing proteins 5A and 5B.
Pssm-ID: 464427 [Multi-domain] Cd Length: 278 Bit Score: 337.07 E-value: 3.31e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 81 IISLNMDLERDMQRIDEANQELLLEIQEKENEIQRLEHEITQTGNPAEDEEWEKENYTVMEREQALQELEEETARLERKN 160
Cdd:pfam14992 1 LNSLNSDLEKDLQRLDEANQVLLLKIQEKEEEIQSLEREITLTRSLAEDEEREELNFTIMEKEDALQELELETAKLEKKN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 161 ETLVHSISELQRKLTRKSQKVIRYEQGDLETTPEESKVKLQQLESSCADQEKELG--------------------KKYQE 220
Cdd:pfam14992 81 EILVKSVMELQRKLSRKSDKNTGLEQETLKQMLEELKVKLQQSEESCADQEKELAkvesdyqsvhqlcedqalciKKYQE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 221 ALKRIEEELETGYLEREVSKVLSMDSERER---STSLNKMDGFISKGALRFSKSIFRSLLFSTLFFIRLLGYLIFHLSFI 297
Cdd:pfam14992 161 ILRKMEEEKETRLLEKEVSKAQSNSSQRVKlveTIQQNMEKTIIKKQKRIFWKRHFRYLFFMVLIFIRLLGYVLFHLQYI 240
|
250 260 270
....*....|....*....|....*....|....*...
gi 755500429 298 NPDLLVNALPKILSRDVLWKLRCFLFPSLTLETEDMLP 335
Cdd:pfam14992 241 NPDLLVDTLPKMLSRRTLWRLRCFLFPFLTLEVEDLLP 278
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
56-240 |
3.29e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 56 EQKENQLdyESEKMEILRLAQSKKNIISLNMDLERDMQRIDEANQELLLEIQEKENEIQRLEHEI-----TQTGNPAEDE 130
Cdd:TIGR04523 366 EEKQNEI--EKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIerlkeTIIKNNSEIK 443
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 131 EWEKENYtvmEREQALQELEEETARLERKNETLVHSISELQRKLTRKSQKVIRYEQ----------------GDLETTPE 194
Cdd:TIGR04523 444 DLTNQDS---VKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKelkklneekkeleekvKDLTKKIS 520
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 755500429 195 ESKVKLQQLESSCADQEKELGKKYQEaLKRIEEELETGYLEREVSK 240
Cdd:TIGR04523 521 SLKEKIEKLESEKKEKESKISDLEDE-LNKDDFELKKENLEKEIDE 565
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
56-237 |
3.44e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 56 EQKENQLDYESEKMEIL--RLAQSKKNIISLNMDLERDMQRIDEANQEL------LLEIQEKENEIQRLEHEITQTGNPA 127
Cdd:COG1196 298 ARLEQDIARLEERRRELeeRLEELEEELAELEEELEELEEELEELEEELeeaeeeLEEAEAELAEAEEALLEAEAELAEA 377
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 128 EdEEWEKENYTVMEREQALQELEEETARLERKNETLVHSISELQRKLTRKSQKVIRYEQGDLETTPEESKVKLQQLESsc 207
Cdd:COG1196 378 E-EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL-- 454
|
170 180 190
....*....|....*....|....*....|
gi 755500429 208 ADQEKELGKKYQEALKRIEEELETGYLERE 237
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLE 484
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
53-231 |
9.97e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.58 E-value: 9.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 53 PMEEQKENQLDYESEKMEilrlaQSKKNIISLNMDLERDMQRIDEANQEllleIQEKENEIQRLEHEITQTgnpaedeew 132
Cdd:COG3883 16 PQIQAKQKELSELQAELE-----AAQAELDALQAELEELNEEYNELQAE----LEALQAEIDKLQAEIAEA--------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 133 ekenytvmereqalqeleeeTARLERKNETLVHSISELQRK-------------------LTRKS--QKVIRYEQGDLET 191
Cdd:COG3883 78 --------------------EAEIEERREELGERARALYRSggsvsyldvllgsesfsdfLDRLSalSKIADADADLLEE 137
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 755500429 192 TpEESKVKLQQLESSCADQEKELgKKYQEALKRIEEELET 231
Cdd:COG3883 138 L-KADKAELEAKKAELEAKLAEL-EALKAELEAAKAELEA 175
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
38-253 |
1.12e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 38 LPLFITTSLLTFQGPPMEEQKENQLDYESEKMEILR--LAQSKKNIISLNMDLERDMQRIDEANQELLL---EIQEKENE 112
Cdd:COG4942 5 LLLALLLALAAAAQADAAAEAEAELEQLQQEIAELEkeLAALKKEEKALLKQLAALERRIAALARRIRAleqELAALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 113 IQRLEHEITQTgnpAEDEEWEKENYTVMEREQALQELEEETA----------------RLERKNETLVHSISELQRKLTR 176
Cdd:COG4942 85 LAELEKEIAEL---RAELEAQKEELAELLRALYRLGRQPPLAlllspedfldavrrlqYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 177 --KSQKVIRYEQGDLETTPEESKVKLQQLESSCADQEKELG------KKYQEALKRIEEELETgyLEREVSKVLSMDSER 248
Cdd:COG4942 162 laALRAELEAERAELEALLAELEEERAALEALKAERQKLLArlekelAELAAELAELQQEAEE--LEALIARLEAEAAAA 239
|
....*
gi 755500429 249 ERSTS 253
Cdd:COG4942 240 AERTP 244
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
54-258 |
2.26e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 2.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 54 MEEQKENQLDYESEKMEILRLAQSKkniislnmdLERDMQRIDEANQELLLEIQEKENEIQRLEHEITQTgnpaeDEEWE 133
Cdd:TIGR02168 254 ELEELTAELQELEEKLEELRLEVSE---------LEEEIEELQKELYALANEISRLEQQKQILRERLANL-----ERQLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 134 KENYTVMEREQALQELEEETARLERKNETLVHSISELQRKLTRKsqkviRYEQGDLETTPEESKVKLQQLESSCADQEKE 213
Cdd:TIGR02168 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEL-----EAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 755500429 214 LgKKYQEALKRIEEELETgyLEREVSKVLSMDSERERSTSLNKMD 258
Cdd:TIGR02168 395 I-ASLNNEIERLEARLER--LEDRRERLQQEIEELLKKLEEAELK 436
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
87-176 |
2.42e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.46 E-value: 2.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 87 DLERDMQRIDEANQELLLEIQEKENEIQRLEHEITQTGNPAEDEEWEKENYTVMEReqalqeleeETARLERKNETLVHS 166
Cdd:COG2433 417 RLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREISRLDR---------EIERLERELEEERER 487
|
90
....*....|
gi 755500429 167 ISELQRKLTR 176
Cdd:COG2433 488 IEELKRKLER 497
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
54-251 |
2.72e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.72 E-value: 2.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 54 MEEQKENQLDYESEKMEILRLAQSKKNiislnmdlERDMQRIDEANQELLLEIQEKENEIQRLEHEITQtgnpaeDEEWE 133
Cdd:pfam17380 407 LEEERQRKIQQQKVEMEQIRAEQEEAR--------QREVRRLEEERAREMERVRLEEQERQQQVERLRQ------QEEER 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 134 KENYTVMEREQALQELEEETAR--LERKNETLVHSISELQRKltrksQKVIRYEQGDLETTPEESKVKLQQLESSCADQE 211
Cdd:pfam17380 473 KRKKLELEKEKRDRKRAEEQRRkiLEKELEERKQAMIEEERK-----RKLLEKEMEERQKAIYEEERRREAEEERRKQQE 547
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 755500429 212 KELGKKYQEALKRIEEE---LETGYLEREVSKVLsMDSERERS 251
Cdd:pfam17380 548 MEERRRIQEQMRKATEErsrLEAMEREREMMRQI-VESEKARA 589
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
56-237 |
3.14e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 56 EQKENQLDYESEKMEILRLAQSKKNIISLNMDLERDMQRIDEANQELLLEIQEKENEIQRLEHEITQTGNpAEDEEWEKE 135
Cdd:pfam02463 760 EEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEK-IKEEELEEL 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 136 NYTVMEREQALQELEEETARLERKNETLVHSISELQRKLTRKSQKVIRYEQGDLETTPEESKVKLQQLESSCADQEKELG 215
Cdd:pfam02463 839 ALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENE 918
|
170 180
....*....|....*....|..
gi 755500429 216 KKYQEALKRIEEELETGYLERE 237
Cdd:pfam02463 919 IEERIKEEAEILLKYEEEPEEL 940
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
63-259 |
7.44e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 38.11 E-value: 7.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 63 DYESEKMEI-LRLAQSKKNIISLNMDLERDMQRIDEANQELLL---EIQEKENEIQRLEHEITqtgnpAEDEEWEKENYT 138
Cdd:TIGR02168 299 RLEQQKQILrERLANLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELE-----ELEAELEELESR 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 139 VMEREQALQELEEETARLERKNETLVHSISELQRKLTRKSQKVIRYEQGDLETTPEESKVKLQQLESSCADQEKELgKKY 218
Cdd:TIGR02168 374 LEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEEL-EEL 452
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 755500429 219 QEALKRIEEELETGYLEREVSKVLSMDSERERSTSLNKMDG 259
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDS 493
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
55-242 |
9.24e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 38.13 E-value: 9.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 55 EEQKENQLDYESEKMEILRLAQSKKNIISLNMDLE---RDMQRIDEANQELLLEIQEKENEIQRLEHEITQTGNPAEDEE 131
Cdd:TIGR02169 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIEnvkSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 132 WEKENYTVMEREQALQELEEETARLERKNETLVHSISEL---------QRKLTRKSQKVIRYEQGDLETTPEESKVKLQQ 202
Cdd:TIGR02169 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELqeqridlkeQIKSIEKEIENLNGKKEELEEELEELEAALRD 879
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 755500429 203 LESSCADQEKE---LGKKYQEALKRIEEELETGYLEREVSKVL 242
Cdd:TIGR02169 880 LESRLGDLKKErdeLEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
96-237 |
9.42e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 37.21 E-value: 9.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 96 DEANQELLLEIQEKENEIQRLEHEITQTgnPAE----DEEWEKENYTVMEREQALQELEEETARLERKNETLVHSISELQ 171
Cdd:COG1579 2 MPEDLRALLDLQELDSELDRLEHRLKEL--PAElaelEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 755500429 172 RKLT------------------RKSQKVIRYEQGDLETTPEESKVKLQQLESSCADQEKELGKK---YQEALKRIEEELE 230
Cdd:COG1579 80 EQLGnvrnnkeyealqkeieslKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKkaeLDEELAELEAELE 159
|
....*..
gi 755500429 231 TGYLERE 237
Cdd:COG1579 160 ELEAERE 166
|
|
| |
