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Conserved domains on  [gi|743940744|ref|XP_011014846|]
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PREDICTED: probable polygalacturonase At1g80170 isoform X2 [Populus euphratica]

Protein Classification

polysaccharide lyase domain-containing protein; polysaccharide lyase 6 family protein( domain architecture ID 10010898)

polysaccharide lyase domain-containing protein may function as a hydrolase| polysaccharide lyase 6 family protein similar to Pseudomonas sp. alginate lyase that catalyzes the eliminative cleavage of alginate to produce oligosaccharides with 4-deoxy-alpha-L-erythro-hex-4-enuronosyl groups at their non-reducing ends and beta-D-mannuronate at their reducing end

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN02793 PLN02793
Probable polygalacturonase
 1-440 0e+00

Probable polygalacturonase


:

Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 869.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744   1 MNNLRFGFCPKGAITIRVLICACFVCVQG-FDSLLQLPQSAPSRIRPSSKRVLLVGDFGAKGDGLSNDTQAFKEAWEMAC 79
Cdd:PLN02793   1 MSYSRGGTEVLCLLLLVVASSLAFVCNQGsFESLLQLPQRQSARTRPRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  80 SFRGRTRILIPAGYNFLVHPVDFGGPCKSKVILDISGTIVAPEDPAAWKGLNRRKWLYFHGVKHLTVEGGGTVNGRGWLW 159
Cdd:PLN02793  81 SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 160 WAQSCKINKTNPCRNAPTAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVMTFHLIVTSPAVSPNTDGIHISASHGVKI 239
Cdd:PLN02793 161 WAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 240 KDSVVRT-DDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNI 318
Cdd:PLN02793 241 KDSIVRTgDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 319 TFQNIFMENVSNPIIIDQYYCDAGVPCANQTSAVIVENISFRRIKGTSATEEAIKFVCSDDFPCKGLYLEDVQLLSHTGG 398
Cdd:PLN02793 321 TFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|..
gi 743940744 399 TTRSFCWQAYGSSRGLVHPSPCFSCSEGFIKEKVPSHLLQSF 440
Cdd:PLN02793 401 FTESFCWEAYGSSSGQVYPPPCFSDSTSFIKQKVQSGSTSFF 442
 
Name Accession Description Interval E-value
PLN02793 PLN02793
Probable polygalacturonase
 1-440 0e+00

Probable polygalacturonase


Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 869.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744   1 MNNLRFGFCPKGAITIRVLICACFVCVQG-FDSLLQLPQSAPSRIRPSSKRVLLVGDFGAKGDGLSNDTQAFKEAWEMAC 79
Cdd:PLN02793   1 MSYSRGGTEVLCLLLLVVASSLAFVCNQGsFESLLQLPQRQSARTRPRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  80 SFRGRTRILIPAGYNFLVHPVDFGGPCKSKVILDISGTIVAPEDPAAWKGLNRRKWLYFHGVKHLTVEGGGTVNGRGWLW 159
Cdd:PLN02793  81 SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 160 WAQSCKINKTNPCRNAPTAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVMTFHLIVTSPAVSPNTDGIHISASHGVKI 239
Cdd:PLN02793 161 WAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 240 KDSVVRT-DDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNI 318
Cdd:PLN02793 241 KDSIVRTgDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 319 TFQNIFMENVSNPIIIDQYYCDAGVPCANQTSAVIVENISFRRIKGTSATEEAIKFVCSDDFPCKGLYLEDVQLLSHTGG 398
Cdd:PLN02793 321 TFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|..
gi 743940744 399 TTRSFCWQAYGSSRGLVHPSPCFSCSEGFIKEKVPSHLLQSF 440
Cdd:PLN02793 401 FTESFCWEAYGSSSGQVYPPPCFSDSTSFIKQKVQSGSTSFF 442
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 86-404 7.96e-73

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 231.50  E-value: 7.96e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744   86 RILIPAGynFLVHPVDFGGPckSKVILDisGTIVApeDPAAWKGlnRRKWLYFHGVKhLTVEGGGTVNGRGWLWWAQSCK 165
Cdd:pfam00295   6 QILVPAG--FTLDLTGLTSG--TTVTFE--GTTTF--GYKEWNG--KLIWISGSSIT-VTGASGGTIDGQGQRWWDGKGT 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  166 inKTNPCRNAPTAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVMTFHLIVTSPAVS---PNTDGIHISASHGVKIKDS 242
Cdd:pfam00295  75 --KKNGGKKKPKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDsngHNTDGFDVGSSSGVTISNT 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  243 VVRT-DDCISIVSNSSrIKIRNIACGPGHGISIGSLGkSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNITFQ 321
Cdd:pfam00295 153 NIYNqDDCIAINSGSN-ISITNVTCGGGHGISIGSVG-GRSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITYE 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  322 NIFMENVS-NPIIIDQYYCDAGvPCANQTSAVIVENISFRRIKGTSATE-EAIKFVCSDDFpCKGLYLEDVQLlshTGGT 399
Cdd:pfam00295 231 NIVLSNISkYGIVIDQDYENGE-PTGKPTSGVKISDITFKNVTGTVASSaTAVYLLCGDGS-CSGWTWSGVNI---TGGK 305


                  ....*
gi 743940744  400 TRSFC 404
Cdd:pfam00295 306 STSKC 310
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
46-399 6.50e-57

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 191.96  E-value: 6.50e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  46 PSSKRVLLVGDFGAKGDGLSNDTQAFKEAWEmACSFRGRTRILIPAGyNFLVHPVDFggpcKSKVILDIS--GTIVAPED 123
Cdd:COG5434    4 SFPAKTFNITDFGAKGDGKTLNTAAIQKAID-ACAAAGGGTVLVPAG-TYLTGPIFL----KSNVTLHLEkgATLLGSTD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 124 PAA-------WKGL---NRRKWLYFHGVKHLTVEGGGTVNGRGWLWW--AQSCKINKTNPCRNA----PTAITFHKCKDL 187
Cdd:COG5434   78 PADyplvetrWEGGelkGYSALIYAENAENIAITGEGTIDGNGDAWWpwKKEARQSGWVPVGAYdylrPRLIQLKNCKNV 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 188 KVENLKVVCGQKMHIAFTNCLRVMTFHLIVTSPAVSPNTDGIHISASHGVKIKDSVVRT-DDCISIVSN----------S 256
Cdd:COG5434  158 LLEGVTLRNSPFWTIHPLGCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTgDDAIAIKSGrdadgrrnrpT 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 257 SRIKIRNIACGPGHG-ISIGSlgksNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNITFQNIFMENVS-NPIII 334
Cdd:COG5434  238 ENIVIRNCTFRSGHGgIVIGS----ETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVKgTPIFI 313

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 743940744 335 DQYYcdagvPCANQTSAVIVENISFRRIKGTSAtEEAIKFVCSDDFPCKGLYLEDVQLLSHTGGT 399
Cdd:COG5434  314 NLFY-----EGDRGGPTPTFRNITISNVTATGA-KSAILIAGLPEAPIENITLENVTIGAAYGFY 372
 
Name Accession Description Interval E-value
PLN02793 PLN02793
Probable polygalacturonase
 1-440 0e+00

Probable polygalacturonase


Pssm-ID: 215426 [Multi-domain]  Cd Length: 443  Bit Score: 869.58  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744   1 MNNLRFGFCPKGAITIRVLICACFVCVQG-FDSLLQLPQSAPSRIRPSSKRVLLVGDFGAKGDGLSNDTQAFKEAWEMAC 79
Cdd:PLN02793   1 MSYSRGGTEVLCLLLLVVASSLAFVCNQGsFESLLQLPQRQSARTRPRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMAC 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  80 SFRGRTRILIPAGYNFLVHPVDFGGPCKSKVILDISGTIVAPEDPAAWKGLNRRKWLYFHGVKHLTVEGGGTVNGRGWLW 159
Cdd:PLN02793  81 SSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 160 WAQSCKINKTNPCRNAPTAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVMTFHLIVTSPAVSPNTDGIHISASHGVKI 239
Cdd:PLN02793 161 WAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVI 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 240 KDSVVRT-DDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNI 318
Cdd:PLN02793 241 KDSIVRTgDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKI 320

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 319 TFQNIFMENVSNPIIIDQYYCDAGVPCANQTSAVIVENISFRRIKGTSATEEAIKFVCSDDFPCKGLYLEDVQLLSHTGG 398
Cdd:PLN02793 321 TFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD 400

                        410       420       430       440
                 ....*....|....*....|....*....|....*....|..
gi 743940744 399 TTRSFCWQAYGSSRGLVHPSPCFSCSEGFIKEKVPSHLLQSF 440
Cdd:PLN02793 401 FTESFCWEAYGSSSGQVYPPPCFSDSTSFIKQKVQSGSTSFF 442
PLN02218 PLN02218
polygalacturonase ADPG
 54-417 3.95e-132

polygalacturonase ADPG


Pssm-ID: 177865 [Multi-domain]  Cd Length: 431  Bit Score: 387.46  E-value: 3.95e-132
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  54 VGDFGAKGDGLSNDTQAFKEAWEMACSFRGRTRILIPAGYNFLVHPVDFGGPCKSKVILDISGTIVAPEDPAAWKGLNrr 133
Cdd:PLN02218  70 VSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKSIRTVQIFGTLSASQKRSDYKDIS-- 147

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 134 KWLYFHGVKHLTVEGGGT--VNGRGWLWWAQSCKINKTNPCRNAPTAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVM 211
Cdd:PLN02218 148 KWIMFDGVNNLSVDGGSTgvVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQISIEKCSNVQ 227

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 212 TFHLIVTSPAVSPNTDGIHISASHGVKIKDSVVRT-DDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVM 290
Cdd:PLN02218 228 VSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTgDDCISIESGSQNVQINDITCGPGHGISIGSLGDDNSKAFVSGVT 307

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 291 VDGAFLSNTDNGVRIKTWQGGGGNATNITFQNIFMENVSNPIIIDQYYCDAGvPCANQTSAVIVENISFRRIKGTSATEE 370
Cdd:PLN02218 308 VDGAKLSGTDNGVRIKTYQGGSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYRNISGTSASDV 386

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*..
gi 743940744 371 AIKFVCSDDFPCKGLYLEDVQLlshTGGTTRsfCWQAYGSSRGLVHP 417
Cdd:PLN02218 387 AITFNCSKNYPCQGIVLDNVNI---KGGKAT--CTNANVVDKGAVSP 428
PLN03010 PLN03010
polygalacturonase
 54-427 7.03e-94

polygalacturonase


Pssm-ID: 215540 [Multi-domain]  Cd Length: 409  Bit Score: 288.82  E-value: 7.03e-94
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  54 VGDFGAKGDGLSNDTQAFKEAWEMACSFRGRTR-ILIPAGYNFLVHPVDFGGPCKSKVI-LDISGTIVAPEDPAAWKGLN 131
Cdd:PLN03010  49 VLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINtLLIPSGKTYLLQPIEFKGPCKSTSIkVQLDGIIVAPSNIVAWSNPK 128

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 132 RRKWLYFHGVKHLTVEGGGTVNGRGWLWWAqsckinktnpcrnaptAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVM 211
Cdd:PLN03010 129 SQMWISFSTVSGLMIDGSGTIDGRGSSFWE----------------ALHISKCDNLTINGITSIDSPKNHISIKTCNYVA 192

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 212 TFHLIVTSPAVSPNTDGIHISASHGVKIKDSVVRT-DDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVM 290
Cdd:PLN03010 193 ISKINILAPETSPNTDGIDISYSTNINIFDSTIQTgDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAKVSDVH 272

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 291 VDGAFLSNTDNGVRIKTWQGGGGNATNITFQNIFMENVSNPIIIDQYYCDAGVPCANQTSAVIVENISFRRIKGTSATEE 370
Cdd:PLN03010 273 VTHCTFNQTTNGARIKTWQGGQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNEN 352

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 743940744 371 AIKFVCSDDFPCKGLYLEDVQLLSHTGGTTRSFCWQAYGSSRGLVHPSPCFSCSEGF 427
Cdd:PLN03010 353 AITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCFKNNSTS 409
PLN02188 PLN02188
polygalacturonase/glycoside hydrolase family protein
 17-420 1.44e-93

polygalacturonase/glycoside hydrolase family protein


Pssm-ID: 215120 [Multi-domain]  Cd Length: 404  Bit Score: 287.90  E-value: 1.44e-93
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  17 RVLICACFVCVQGfdsLLQLPQSAPSRIRPSSKRVLLVGDFGAKGDGLSNDTQAFKEAWEMACSFRGRTRILIPAGyNFL 96
Cdd:PLN02188   5 LLLLLVVVFIVNA---LVLSSAGGGSVVKGSSTFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPG-TYY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  97 VHPVDFGGPCKSKVILdiSGTIVAPEDPAAWKGLNrrKWLYFHGVKHLTVEGGGTVNGRGWLWWA-QSCKINKTnpCRNA 175
Cdd:PLN02188  81 IGPVQFHGPCTNVSSL--TFTLKAATDLSRYGSGN--DWIEFGWVNGLTLTGGGTFDGQGAAAWPfNKCPIRKD--CKLL 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 176 PTAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVMTFHLIVTSPAVSPNTDGIHISASHGVKIKDSVVRT-DDCISIVS 254
Cdd:PLN02188 155 PTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTgDDCISIGQ 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 255 NSSRIKIRNIACGPGHGISIGSLGKSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQG--GGGNATNITFQNIFMENVSNPI 332
Cdd:PLN02188 235 GNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANspGKSAATNMTFENIVMNNVTNPI 314

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 333 IIDQYYCDAGVPCANQTSAVIVENISFRRIKGTSATEEAIKFVCSDDFPCKGLYLEDVQL-LSHTGGTTRSFCWQAYGSS 411
Cdd:PLN02188 315 IIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLdLSSGEGGTSSSCENVRAKY 394


                 ....*....
gi 743940744 412 RGLVHPSPC 420
Cdd:PLN02188 395 IGTQIPPPC 403
PLN02155 PLN02155
polygalacturonase
 47-422 3.00e-85

polygalacturonase


Pssm-ID: 165802 [Multi-domain]  Cd Length: 394  Bit Score: 266.16  E-value: 3.00e-85
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  47 SSKRVLLVGDFGAKGDGLSNDTQAFKEAWEMACSFRGRTRILIPAGyNFLVHPVDFGGPCKSKVILDISGTIVAPEDPAA 126
Cdd:PLN02155  23 SASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTG-TFLLKVITFGGPCKSKITFQVAGTVVAPEDYRT 101

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 127 WKglNRRKWLYFHGVKHLTVEGGgTVNGRGWLWWaqSCKINKTNpCRNAPTAITFHKCKDLKVENLKVVCGQKMHIAFTN 206
Cdd:PLN02155 102 FG--NSGYWILFNKVNRFSLVGG-TFDARANGFW--SCRKSGQN-CPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNG 175

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 207 CLRVMTFHLIVTSPAVSPNTDGIHISASHGVKIKDSVVRT-DDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSSL 285
Cdd:PLN02155 176 CTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTgDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDG 255

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 286 VRDVMVDGAFLSNTDNGVRIKTW-QGGGGNATNITFQNIFMENVSNPIIIDQYYCDAGVPCANQTSAVIVENISFRRIKG 364
Cdd:PLN02155 256 VENVTVSSSVFTGSQNGVRIKSWaRPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQG 335

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 743940744 365 TSATEEAIKFVCSDDFPCKGLYLEDVQLLSHTGGTTRSFCWQAYGSSRGLVHPSPCFS 422
Cdd:PLN02155 336 TSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393
PLN03003 PLN03003
Probable polygalacturonase At3g15720
 47-399 1.09e-84

Probable polygalacturonase At3g15720


Pssm-ID: 178580 [Multi-domain]  Cd Length: 456  Bit Score: 266.93  E-value: 1.09e-84
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  47 SSKRVLLVGDFGAKGDGLSNDTQAFKEAWEMACSFRGRTRILIPAGYNFLVHPVDFGGPCKSK-VILDISGTIVAPEDpA 125
Cdd:PLN03003  19 TSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTpVFVQMLGKLVAPSK-G 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 126 AWKGlNRRKWLYFHGVKHLTVEGGGTVNGRGWLWWAQSckinktnpcRNAPTAITFHKCKDLKVENLKVVCGQKMHIAFT 205
Cdd:PLN03003  98 NWKG-DKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK---------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHIS 167

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 206 NCLRVMTFHLIVTSPAVSPNTDGIHISASHGVKIKDSVVRT-DDCISIVSNSSRIKIRNIACGPGHGISIGSLGKSNSSS 284
Cdd:PLN03003 168 ECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATgDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETA 247

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 285 LVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNITFQNIFMENVSNPIIIDQYY--CDAGVPCANQTSAVIVENISFRRI 362
Cdd:PLN03003 248 TVENVCVQNCNFRGTMNGARIKTWQGGSGYARMITFNGITLDNVENPIIIDQFYngGDSDNAKDRKSSAVEVSKVVFSNF 327

                        330       340       350
                 ....*....|....*....|....*....|....*..
gi 743940744 363 KGTSATEEAIKFVCSDDFPCKGLYLEDVQLLSHTGGT 399
Cdd:PLN03003 328 IGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGS 364
Glyco_hydro_28 pfam00295
Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2. ...
 86-404 7.96e-73

Glycosyl hydrolases family 28; Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism.


Pssm-ID: 425588 [Multi-domain]  Cd Length: 319  Bit Score: 231.50  E-value: 7.96e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744   86 RILIPAGynFLVHPVDFGGPckSKVILDisGTIVApeDPAAWKGlnRRKWLYFHGVKhLTVEGGGTVNGRGWLWWAQSCK 165
Cdd:pfam00295   6 QILVPAG--FTLDLTGLTSG--TTVTFE--GTTTF--GYKEWNG--KLIWISGSSIT-VTGASGGTIDGQGQRWWDGKGT 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  166 inKTNPCRNAPTAITFHKCKDLKVENLKVVCGQKMHIAFTNCLRVMTFHLIVTSPAVS---PNTDGIHISASHGVKIKDS 242
Cdd:pfam00295  75 --KKNGGKKKPKFIYIHKVKNSKITGLNIKNSPVFHFSVQSGTDLTISDITIDNSAGDsngHNTDGFDVGSSSGVTISNT 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  243 VVRT-DDCISIVSNSSrIKIRNIACGPGHGISIGSLGkSNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNITFQ 321
Cdd:pfam00295 153 NIYNqDDCIAINSGSN-ISITNVTCGGGHGISIGSVG-GRSDNTVKNVTVKDSTVVNSDNGVRIKTISGATGTVSNITYE 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  322 NIFMENVS-NPIIIDQYYCDAGvPCANQTSAVIVENISFRRIKGTSATE-EAIKFVCSDDFpCKGLYLEDVQLlshTGGT 399
Cdd:pfam00295 231 NIVLSNISkYGIVIDQDYENGE-PTGKPTSGVKISDITFKNVTGTVASSaTAVYLLCGDGS-CSGWTWSGVNI---TGGK 305


                  ....*
gi 743940744  400 TRSFC 404
Cdd:pfam00295 306 STSKC 310
Pgu1 COG5434
Polygalacturonase [Carbohydrate transport and metabolism];
46-399 6.50e-57

Polygalacturonase [Carbohydrate transport and metabolism];


Pssm-ID: 444185 [Multi-domain]  Cd Length: 373  Bit Score: 191.96  E-value: 6.50e-57
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  46 PSSKRVLLVGDFGAKGDGLSNDTQAFKEAWEmACSFRGRTRILIPAGyNFLVHPVDFggpcKSKVILDIS--GTIVAPED 123
Cdd:COG5434    4 SFPAKTFNITDFGAKGDGKTLNTAAIQKAID-ACAAAGGGTVLVPAG-TYLTGPIFL----KSNVTLHLEkgATLLGSTD 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 124 PAA-------WKGL---NRRKWLYFHGVKHLTVEGGGTVNGRGWLWW--AQSCKINKTNPCRNA----PTAITFHKCKDL 187
Cdd:COG5434   78 PADyplvetrWEGGelkGYSALIYAENAENIAITGEGTIDGNGDAWWpwKKEARQSGWVPVGAYdylrPRLIQLKNCKNV 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 188 KVENLKVVCGQKMHIAFTNCLRVMTFHLIVTSPAVSPNTDGIHISASHGVKIKDSVVRT-DDCISIVSN----------S 256
Cdd:COG5434  158 LLEGVTLRNSPFWTIHPLGCENVTVDGVTIDNPADAPNTDGIDPDSCRNVLIENCYIDTgDDAIAIKSGrdadgrrnrpT 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744 257 SRIKIRNIACGPGHG-ISIGSlgksNSSSLVRDVMVDGAFLSNTDNGVRIKTWQGGGGNATNITFQNIFMENVS-NPIII 334
Cdd:COG5434  238 ENIVIRNCTFRSGHGgIVIGS----ETSGGVRNVTVENCTFDGTDRGLRIKSRRGRGGVVENITIRNITMRNVKgTPIFI 313

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 743940744 335 DQYYcdagvPCANQTSAVIVENISFRRIKGTSAtEEAIKFVCSDDFPCKGLYLEDVQLLSHTGGT 399
Cdd:COG5434  314 NLFY-----EGDRGGPTPTFRNITISNVTATGA-KSAILIAGLPEAPIENITLENVTIGAAYGFY 372
NosD pfam05048
Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to ...
 214-330 2.35e-03

Periplasmic copper-binding protein (NosD); NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.


Pssm-ID: 428281 [Multi-domain]  Cd Length: 215  Bit Score: 39.32  E-value: 2.35e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 743940744  214 HLIVTSPAVSPNTDGIHISASHGVKIKDSVVRTDDCISIVSNSSRIKIRN--IACGPGHGIsigSLGKSNSSSLVRDVMV 291
Cdd:pfam05048  51 NNTITGNRISNLRYGIHLMNSNDNTISDNVFSGNTAGIALMSSSNNTLENntISGNTNYGI---LLSDSSNNTISNNTIS 127

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 743940744  292 D----GAFLSNTDNGV----RIKTWQGG----GGNATNITFQNIFMENVSN 330
Cdd:pfam05048 128 NnngkGIFLYNSDYNTitgnRITSNGIGihflAGSNGNTIYNNYFINNSEN 178
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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