NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|688577835|ref|XP_009304467|]
View 

nuclear transcription factor Y subunit alpha isoform X4 [Danio rerio]

Protein Classification

CCAAT-binding transcription factor( domain architecture ID 10488957)

CCAAT-binding transcription factor such as the nuclear transcription factor Y subunit alpha, which is a component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5'-CCAAT-3' box motif found in the promoters of its target genes

Gene Ontology:  GO:0003677|GO:0003700|GO:0006366|GO:0016602|GO:0000981
PubMed:  1549471

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
244-299 7.59e-37

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


:

Pssm-ID: 396572  Cd Length: 56  Bit Score: 126.54  E-value: 7.59e-37
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 688577835  244 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGDGGRF 299
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
 
Name Accession Description Interval E-value
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
244-299 7.59e-37

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 126.54  E-value: 7.59e-37
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 688577835  244 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGDGGRF 299
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
CBF smart00521
CCAAT-Binding transcription Factor;
242-301 2.66e-35

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 122.53  E-value: 2.66e-35
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 688577835   242 EEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGDGGRFFS 301
Cdd:smart00521   2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLN 61
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
243-311 3.76e-17

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 79.46  E-value: 3.76e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688577835 243 EEPLYVNAKQYHRILKRRQARAKLEAegKIPKERRKYLHESRHRHAMARKRGDGGRFFSPKEKEEMALQ 311
Cdd:COG5224  158 FQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLT 224
 
Name Accession Description Interval E-value
CBFB_NFYA pfam02045
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;
244-299 7.59e-37

CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B;


Pssm-ID: 396572  Cd Length: 56  Bit Score: 126.54  E-value: 7.59e-37
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 688577835  244 EPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGDGGRF 299
Cdd:pfam02045   1 EPIYVNAKQYHRILKRRQARAKLEAEGKLPKNRKPYLHESRHKHAMRRPRGPGGRF 56
CBF smart00521
CCAAT-Binding transcription Factor;
242-301 2.66e-35

CCAAT-Binding transcription Factor;


Pssm-ID: 128795 [Multi-domain]  Cd Length: 62  Bit Score: 122.53  E-value: 2.66e-35
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 688577835   242 EEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGDGGRFFS 301
Cdd:smart00521   2 EEEPVYVNAKQYHRILRRRQARAKLEAQGKLPKERKPYLHESRHLHAMRRPRGSGGRFLN 61
HAP2 COG5224
CCAAT-binding factor, subunit B [Transcription];
243-311 3.76e-17

CCAAT-binding factor, subunit B [Transcription];


Pssm-ID: 227549 [Multi-domain]  Cd Length: 248  Bit Score: 79.46  E-value: 3.76e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688577835 243 EEPLYVNAKQYHRILKRRQARAKLEAegKIPKERRKYLHESRHRHAMARKRGDGGRFFSPKEKEEMALQ 311
Cdd:COG5224  158 FQPDYVNAKQGNEISKRPGLRVYLDD--SVSAGRAFYLHESRHKHAMLRVRDPTGRFLTASEIDPLNLT 224
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH