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Conserved domains on  [gi|688547637|ref|XP_009298538|]
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coiled-coil-helix-coiled-coil-helix domain containing 3a isoform X2 [Danio rerio]

Protein Classification

DUF737 and CHCH domain-containing protein( domain architecture ID 12062594)

DUF737 and CHCH domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MIC19_MIC25 pfam05300
MICOS complex subunit MIC19/MIC25; MIC19 (also known as ChChd3) and MIC25 (also known as ...
 209-371 2.30e-45

MICOS complex subunit MIC19/MIC25; MIC19 (also known as ChChd3) and MIC25 (also known as ChChd6) are components of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. MIC19 plays an important role in the maintenance of the MICOS complex stability and the mitochondrial cristae morphology.


:

Pssm-ID: 461615 [Multi-domain]  Cd Length: 173  Bit Score: 154.85  E-value: 2.30e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637  209 QPPLTVDQPVVSPTAPPPPTVDESELRRKITEELRKGLEEDRRKtqeelnqwlekeksqahakaqaeaqaqVKDEVSRIL 288
Cdd:pfam05300  38 QAPESTSAPPSAESSGGRQPVDEEELRKKIKEELYKRLEQEQAK---------------------------VQEELARLA 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637  289 ALEKSGAEETIQKAILRERVSAEDERLQAQIYARQLEERDKELRKQDAFYREQVAKLKERSSQFYKVTNENYHKAADEVN 368
Cdd:pfam05300  91 EREREAAQESLTRAILRERASTEDERLKAQQLAKQLEEKEAELKKQDAFYKEQLARLEEKNAEFYKVTTEQFHKAATKAE 170


                  ...
gi 688547637  369 AKF 371
Cdd:pfam05300 171 ARF 173
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 79-227 2.79e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 2.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637   79 HPPPSLPERvklPEQVTTPAPPPPPPPLESVGVLSTPAGESIAPPAAASELLTASPPVDIIASPPSSTLTPSPPIADSVT 158
Cdd:PHA03247 2702 PPPPPTPEP---APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688547637  159 APPAFELFTPAAPLESIPTCPITKPASDLPVELTAPSPPPEPPSSAQTALQPPLTVdQPVVSPTAPPPP 227
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA-QPTAPPPPPGPP 2846
CHCH pfam06747
CHCH domain; we have identified a conserved motif in the LOC118487 protein that we have called ...
 380-412 8.38e-03

CHCH domain; we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterized proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesize the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit. The CHCH domain was previously called DUF657.


:

Pssm-ID: 429096  Cd Length: 35  Bit Score: 33.75  E-value: 8.38e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 688547637  380 CTDLQGQILKCYRENAGKTLLCSNIASQYLQCV 412
Cdd:pfam06747   1 CGEEFKAFLKCLKDNEDELSKCRKQFDAFRQCV 33
 
Name Accession Description Interval E-value
MIC19_MIC25 pfam05300
MICOS complex subunit MIC19/MIC25; MIC19 (also known as ChChd3) and MIC25 (also known as ...
 209-371 2.30e-45

MICOS complex subunit MIC19/MIC25; MIC19 (also known as ChChd3) and MIC25 (also known as ChChd6) are components of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. MIC19 plays an important role in the maintenance of the MICOS complex stability and the mitochondrial cristae morphology.


Pssm-ID: 461615 [Multi-domain]  Cd Length: 173  Bit Score: 154.85  E-value: 2.30e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637  209 QPPLTVDQPVVSPTAPPPPTVDESELRRKITEELRKGLEEDRRKtqeelnqwlekeksqahakaqaeaqaqVKDEVSRIL 288
Cdd:pfam05300  38 QAPESTSAPPSAESSGGRQPVDEEELRKKIKEELYKRLEQEQAK---------------------------VQEELARLA 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637  289 ALEKSGAEETIQKAILRERVSAEDERLQAQIYARQLEERDKELRKQDAFYREQVAKLKERSSQFYKVTNENYHKAADEVN 368
Cdd:pfam05300  91 EREREAAQESLTRAILRERASTEDERLKAQQLAKQLEEKEAELKKQDAFYKEQLARLEEKNAEFYKVTTEQFHKAATKAE 170


                  ...
gi 688547637  369 AKF 371
Cdd:pfam05300 171 ARF 173
PHA03247 PHA03247
large tegument protein UL36; Provisional
 79-227 2.79e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 2.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637   79 HPPPSLPERvklPEQVTTPAPPPPPPPLESVGVLSTPAGESIAPPAAASELLTASPPVDIIASPPSSTLTPSPPIADSVT 158
Cdd:PHA03247 2702 PPPPPTPEP---APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688547637  159 APPAFELFTPAAPLESIPTCPITKPASDLPVELTAPSPPPEPPSSAQTALQPPLTVdQPVVSPTAPPPP 227
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA-QPTAPPPPPGPP 2846
PTZ00121 PTZ00121
MAEBL; Provisional
 231-370 8.58e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 8.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637  231 ESELRRKiTEELRKglEEDRRKTQEELNQWLEKEKSQAHAKAQAEAQAQVKDEVsrilalEKSGAEETIQKAiLRERVSA 310
Cdd:PTZ00121 1615 AEEAKIK-AEELKK--AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE------EAKKAEEDKKKA-EEAKKAE 1684

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688547637  311 EDERLQAQIYARQLEERDK--ELRKQDAfyrEQVAKLKE--RSSQFYKVTNENYHKAADEVNAK 370
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKaeELKKKEA---EEKKKAEElkKAEEENKIKAEEAKKEAEEDKKK 1745
CHCH pfam06747
CHCH domain; we have identified a conserved motif in the LOC118487 protein that we have called ...
 380-412 8.38e-03

CHCH domain; we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterized proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesize the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit. The CHCH domain was previously called DUF657.


Pssm-ID: 429096  Cd Length: 35  Bit Score: 33.75  E-value: 8.38e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 688547637  380 CTDLQGQILKCYRENAGKTLLCSNIASQYLQCV 412
Cdd:pfam06747   1 CGEEFKAFLKCLKDNEDELSKCRKQFDAFRQCV 33
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 229-351 9.37e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.38  E-value: 9.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637 229 VDESELRRKITEELRKGLEEDRRKTQEELNQWLEKEKSQAHAKAQAEAQAQVKDEVSRILALEKSGAEETiQKAILRERV 308
Cdd:COG1196  297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA-LLEAEAELA 375

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 688547637 309 SAEDERLQAQIYARQLEERDKELRKQDAFYREQVAKLKERSSQ 351
Cdd:COG1196  376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
 
Name Accession Description Interval E-value
MIC19_MIC25 pfam05300
MICOS complex subunit MIC19/MIC25; MIC19 (also known as ChChd3) and MIC25 (also known as ...
 209-371 2.30e-45

MICOS complex subunit MIC19/MIC25; MIC19 (also known as ChChd3) and MIC25 (also known as ChChd6) are components of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane. MIC19 plays an important role in the maintenance of the MICOS complex stability and the mitochondrial cristae morphology.


Pssm-ID: 461615 [Multi-domain]  Cd Length: 173  Bit Score: 154.85  E-value: 2.30e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637  209 QPPLTVDQPVVSPTAPPPPTVDESELRRKITEELRKGLEEDRRKtqeelnqwlekeksqahakaqaeaqaqVKDEVSRIL 288
Cdd:pfam05300  38 QAPESTSAPPSAESSGGRQPVDEEELRKKIKEELYKRLEQEQAK---------------------------VQEELARLA 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637  289 ALEKSGAEETIQKAILRERVSAEDERLQAQIYARQLEERDKELRKQDAFYREQVAKLKERSSQFYKVTNENYHKAADEVN 368
Cdd:pfam05300  91 EREREAAQESLTRAILRERASTEDERLKAQQLAKQLEEKEAELKKQDAFYKEQLARLEEKNAEFYKVTTEQFHKAATKAE 170


                  ...
gi 688547637  369 AKF 371
Cdd:pfam05300 171 ARF 173
PHA03247 PHA03247
large tegument protein UL36; Provisional
 79-227 2.79e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 53.02  E-value: 2.79e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637   79 HPPPSLPERvklPEQVTTPAPPPPPPPLESVGVLSTPAGESIAPPAAASELLTASPPVDIIASPPSSTLTPSPPIADSVT 158
Cdd:PHA03247 2702 PPPPPTPEP---APHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAG 2778

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 688547637  159 APPAFELFTPAAPLESIPTCPITKPASDLPVELTAPSPPPEPPSSAQTALQPPLTVdQPVVSPTAPPPP 227
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSA-QPTAPPPPPGPP 2846
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 115-241 6.03e-04

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 42.01  E-value: 6.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637 115 PAGESIAPPAAaselltASPPVDIIASPPSSTLTPSPPIADSVTAPPAFELFTPAAPLESIPTCPITKPASDLPVELTAP 194
Cdd:PRK14951 367 AAAAEAAAPAE------KKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 688547637 195 SPPPEPPSSAQTALQPPLTVDQPVV------SPTAPPPPTVDESELRRKITEE 241
Cdd:PRK14951 441 APAAVALAPAPPAQAAPETVAIPVRvapepaVASAAPAPAAAPAAARLTPTEE 493
PTZ00121 PTZ00121
MAEBL; Provisional
 231-370 8.58e-04

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 42.05  E-value: 8.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637  231 ESELRRKiTEELRKglEEDRRKTQEELNQWLEKEKSQAHAKAQAEAQAQVKDEVsrilalEKSGAEETIQKAiLRERVSA 310
Cdd:PTZ00121 1615 AEEAKIK-AEELKK--AEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAE------EAKKAEEDKKKA-EEAKKAE 1684

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 688547637  311 EDERLQAQIYARQLEERDK--ELRKQDAfyrEQVAKLKE--RSSQFYKVTNENYHKAADEVNAK 370
Cdd:PTZ00121 1685 EDEKKAAEALKKEAEEAKKaeELKKKEA---EEKKKAEElkKAEEENKIKAEEAKKEAEEDKKK 1745
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 109-259 2.13e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.35  E-value: 2.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637 109 VGVLSTPAGESIAPPAAASELLTASPPVDIIASPPSSTLTPSPPIADSVTAPPAFELFTPAAPLESIPTCPITKPASDLP 188
Cdd:PRK07764 387 VAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 688547637 189 VELTAPSPPPEPPSSAQTALQPPLTVDQPVVSPTAPPPPTVDESELRRKiTEELRKGLEEDRRKTQEELNQ 259
Cdd:PRK07764 467 APAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRER-WPEILAAVPKRSRKTWAILLP 536
tolA PRK09510
cell envelope integrity inner membrane protein TolA; Provisional
 230-370 5.69e-03

cell envelope integrity inner membrane protein TolA; Provisional


Pssm-ID: 236545 [Multi-domain]  Cd Length: 387  Bit Score: 38.63  E-value: 5.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637 230 DESELRRKITEELRKGLEEDRRKTQEELNQwLEKEKSQAHAKAQAeaqaqvKDEVSRILALEKSGAEETIQKAILRERVS 309
Cdd:PRK09510  76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQ-LEKERLAAQEQKKQ------AEEAAKQAALKQKQAEEAAAKAAAAAKAK 148

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 688547637 310 AEDERLQAQIYARQLEERDKELRKQDAFYR-EQVAKLKERSSQFYKVTNENYHKAADEVNAK 370
Cdd:PRK09510 149 AEAEAKRAAAAAKKAAAEAKKKAEAEAAKKaAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKK 210
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
115-235 6.01e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.06  E-value: 6.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637 115 PAGESIAPPAAASELLTASPPVdiiASPPSSTLTPSPPIADSVTAPPAFELFTPAAPLESIPTCPITKPAsdlPVELTAP 194
Cdd:PRK07003 381 PAPGARAAAAVGASAVPAVTAV---TGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA---PVPAKAN 454

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|.
gi 688547637 195 SPPPEPPSSAQTALQPPLTVDQPVVSPTAPPPPTVDESELR 235
Cdd:PRK07003 455 ARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPR 495
CHCH pfam06747
CHCH domain; we have identified a conserved motif in the LOC118487 protein that we have called ...
 380-412 8.38e-03

CHCH domain; we have identified a conserved motif in the LOC118487 protein that we have called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterized proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11-kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesize the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit. The CHCH domain was previously called DUF657.


Pssm-ID: 429096  Cd Length: 35  Bit Score: 33.75  E-value: 8.38e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 688547637  380 CTDLQGQILKCYRENAGKTLLCSNIASQYLQCV 412
Cdd:pfam06747   1 CGEEFKAFLKCLKDNEDELSKCRKQFDAFRQCV 33
Smc COG1196
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...
 229-351 9.37e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 440809 [Multi-domain]  Cd Length: 983  Bit Score: 38.38  E-value: 9.37e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688547637 229 VDESELRRKITEELRKGLEEDRRKTQEELNQWLEKEKSQAHAKAQAEAQAQVKDEVSRILALEKSGAEETiQKAILRERV 308
Cdd:COG1196  297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA-LLEAEAELA 375

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 688547637 309 SAEDERLQAQIYARQLEERDKELRKQDAFYREQVAKLKERSSQ 351
Cdd:COG1196  376 EAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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