NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|688596973|ref|XP_009291879|]
View 

multiple epidermal growth factor-like domains protein 11 isoform X1 [Danio rerio]

Protein Classification

EMI domain-containing protein( domain architecture ID 10540334)

EMI domain-containing protein similar to multiple epidermal growth factor-like domains protein 10, a membrane receptor involved in phagocytosis by macrophages and astrocytes of apoptotic cells

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 31-98 1.03e-11

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


:

Pssm-ID: 462204  Cd Length: 69  Bit Score: 61.28  E-value: 1.03e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688596973    31 PNVCS--HWESYAVTVQESYAHPFDQIYYTRCTDIlnwFKCTRHRTSYKTAYRRGVRTMYRRRSQCCPGY 98
Cdd:pfam07546    1 RNVCAykVVSCVVVTGTESYVQPVYKPYLTWCAGH---RRCSTYRTTYRPAYRQVYKTVTRLEWRCCPGW 67
 
Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 31-98 1.03e-11

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


Pssm-ID: 462204  Cd Length: 69  Bit Score: 61.28  E-value: 1.03e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688596973    31 PNVCS--HWESYAVTVQESYAHPFDQIYYTRCTDIlnwFKCTRHRTSYKTAYRRGVRTMYRRRSQCCPGY 98
Cdd:pfam07546    1 RNVCAykVVSCVVVTGTESYVQPVYKPYLTWCAGH---RRCSTYRTTYRPAYRQVYKTVTRLEWRCCPGW 67
 
Name Accession Description Interval E-value
EMI pfam07546
EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final ...
 31-98 1.03e-11

EMI domain; The Pfam alignment is truncated at the C-terminus and does not include the final cysteine defined in Callebaut et al. This is to stop the family overlapping with other domains.


Pssm-ID: 462204  Cd Length: 69  Bit Score: 61.28  E-value: 1.03e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 688596973    31 PNVCS--HWESYAVTVQESYAHPFDQIYYTRCTDIlnwFKCTRHRTSYKTAYRRGVRTMYRRRSQCCPGY 98
Cdd:pfam07546    1 RNVCAykVVSCVVVTGTESYVQPVYKPYLTWCAGH---RRCSTYRTTYRPAYRQVYKTVTRLEWRCCPGW 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH