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Conserved domains on  [gi|672071950|ref|XP_008767175|]
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Purkinje cell protein 2 homolog isoform X1 [Rattus norvegicus]

Protein Classification

GoLoco domain-containing protein( domain architecture ID 10490271)

GoLoco domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
GoLoco pfam02188
GoLoco motif;
27-47 2.89e-05

GoLoco motif;


:

Pssm-ID: 460481  Cd Length: 22  Bit Score: 37.78  E-value: 2.89e-05
                         10        20
                 ....*....|....*....|.
gi 672071950  27 DNLMDMLANTQGRRMDDQRVT 47
Cdd:pfam02188  1 EDFFDLLARVQSSRLDDQRCS 21
 
Name Accession Description Interval E-value
GoLoco pfam02188
GoLoco motif;
27-47 2.89e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 37.78  E-value: 2.89e-05
                         10        20
                 ....*....|....*....|.
gi 672071950  27 DNLMDMLANTQGRRMDDQRVT 47
Cdd:pfam02188  1 EDFFDLLARVQSSRLDDQRCS 21
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 26-48 4.09e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 37.10  E-value: 4.09e-05
                          10        20
                  ....*....|....*....|...
gi 672071950   26 MDNLMDMLANTQGRRMDDQRVTV 48
Cdd:smart00390  1 DEDLFDLLLRMQSSRMDDQRCEL 23
 
Name Accession Description Interval E-value
GoLoco pfam02188
GoLoco motif;
27-47 2.89e-05

GoLoco motif;


Pssm-ID: 460481  Cd Length: 22  Bit Score: 37.78  E-value: 2.89e-05
                         10        20
                 ....*....|....*....|.
gi 672071950  27 DNLMDMLANTQGRRMDDQRVT 47
Cdd:pfam02188  1 EDFFDLLARVQSSRLDDQRCS 21
GoLoco smart00390
LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins
 26-48 4.09e-05

LGN motif, putative GEFs specific for G-alpha GTPases; GEF specific for Galpha_i proteins


Pssm-ID: 214645  Cd Length: 23  Bit Score: 37.10  E-value: 4.09e-05
                          10        20
                  ....*....|....*....|...
gi 672071950   26 MDNLMDMLANTQGRRMDDQRVTV 48
Cdd:smart00390  1 DEDLFDLLLRMQSSRMDDQRCEL 23
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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