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Conserved domains on  [gi|672070887|ref|XP_008766867|]
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mitochondrial import receptor subunit TOM70 isoform X1 [Rattus norvegicus]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 1003384)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
3a0801s09 super family cl36792
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 116-442 3.49e-51

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


The actual alignment was detected with superfamily member TIGR00990:

Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 183.26  E-value: 3.49e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTeknadlSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 195
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  196 AKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNREPLMPSPQFIKSYFSSFTddiiSQPM 275
Cdd:TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR----PKPR 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  276 LKGEKSDEDKDKEgeaLEVKENSGYLKAKQYMEEENYDKIISECSKEIDAQ--GKYMAEALLLRATFYLLIGSANAAKPD 353
Cdd:TIGR00990 277 PAGLEDSNELDEE---TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGklGEKEAIALNLRGTFKCLKGKHLEALAD 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  354 LDKVISLKEAnvklRANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLR 433
Cdd:TIGR00990 354 LSKSIELDPR----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429


                  ....*....
gi 672070887  434 PKFALAQAQ 442
Cdd:TIGR00990 430 PDFIFSHIQ 438
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 116-442 3.49e-51

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 183.26  E-value: 3.49e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTeknadlSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 195
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  196 AKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNREPLMPSPQFIKSYFSSFTddiiSQPM 275
Cdd:TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR----PKPR 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  276 LKGEKSDEDKDKEgeaLEVKENSGYLKAKQYMEEENYDKIISECSKEIDAQ--GKYMAEALLLRATFYLLIGSANAAKPD 353
Cdd:TIGR00990 277 PAGLEDSNELDEE---TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGklGEKEAIALNLRGTFKCLKGKHLEALAD 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  354 LDKVISLKEAnvklRANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLR 433
Cdd:TIGR00990 354 LSKSIELDPR----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429


                  ....*....
gi 672070887  434 PKFALAQAQ 442
Cdd:TIGR00990 430 PDFIFSHIQ 438
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
114-211 9.83e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 73.41  E-value: 9.83e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPteknaDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDP-----DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145

                         90
                 ....*....|....*...
gi 672070887 194 RRAKAHEKLDNKKECLED 211
Cdd:COG4785  146 NRGIALYYLGRYELAIAD 163
TPR_1 pfam00515
Tetratricopeptide repeat;
116-148 1.26e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 1.26e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 672070887  116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPT 148
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 116-203 2.00e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 49.79  E-value: 2.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTekNADLstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 195
Cdd:PLN03088   2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAEL---YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76


                 ....*...
gi 672070887 196 AKAHEKLD 203
Cdd:PLN03088  77 GTACMKLE 84
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 116-148 4.08e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 4.08e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 672070887   116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPT 148
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
 
Name Accession Description Interval E-value
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 116-442 3.49e-51

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 183.26  E-value: 3.49e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTeknadlSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 195
Cdd:TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRR 200

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  196 AKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYKNREPLMPSPQFIKSYFSSFTddiiSQPM 275
Cdd:TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFR----PKPR 276

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  276 LKGEKSDEDKDKEgeaLEVKENSGYLKAKQYMEEENYDKIISECSKEIDAQ--GKYMAEALLLRATFYLLIGSANAAKPD 353
Cdd:TIGR00990 277 PAGLEDSNELDEE---TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGklGEKEAIALNLRGTFKCLKGKHLEALAD 353

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  354 LDKVISLKEAnvklRANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLR 433
Cdd:TIGR00990 354 LSKSIELDPR----VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429


                  ....*....
gi 672070887  434 PKFALAQAQ 442
Cdd:TIGR00990 430 PDFIFSHIQ 438
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
114-211 9.83e-15

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 73.41  E-value: 9.83e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPteknaDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQALELDP-----DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYL 145

                         90
                 ....*....|....*...
gi 672070887 194 RRAKAHEKLDNKKECLED 211
Cdd:COG4785  146 NRGIALYYLGRYELAIAD 163
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
114-211 2.06e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.04  E-value: 2.06e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEA-----LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90
                 ....*....|....*...
gi 672070887 194 RRAKAHEKLDNKKECLED 211
Cdd:COG0457   81 NLGLALQALGRYEEALED 98
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
114-211 1.71e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 64.26  E-value: 1.71e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPteknaDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG0457   40 DDAEALYNLGLAYLRLGRYEEALADYEQALELDP-----DDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALY 114

                         90
                 ....*....|....*...
gi 672070887 194 RRAKAHEKLDNKKECLED 211
Cdd:COG0457  115 NLGLALLELGRYDEAIEA 132
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
114-211 3.82e-11

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 63.10  E-value: 3.82e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPteknaDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG0457   74 DDAEALNNLGLALQALGRYEEALEDYDKALELDP-----DDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALY 148

                         90
                 ....*....|....*...
gi 672070887 194 RRAKAHEKLDNKKECLED 211
Cdd:COG0457  149 NLGIALEKLGRYEEALEL 166
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 114-204 3.11e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 62.32  E-value: 3.11e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLcptekNADLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG3914  110 DNAEALFNLGNLLLALGRLEEALAALRRALAL-----NPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALN 184

                         90
                 ....*....|.
gi 672070887 194 RRAKAHEKLDN 204
Cdd:COG3914  185 NLGNALQDLGR 195
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 300-480 2.96e-08

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 56.15  E-value: 2.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 300 YLKAKQYMEEENYDKIISECSKEIDAQGKYmAEALLLRATFYLLIGSANAAKPDLDKVISLKEANvklrANALIKRGTMC 379
Cdd:COG3914   82 ELAALLLQALGRYEEALALYRRALALNPDN-AEALFNLGNLLLALGRLEEALAALRRALALNPDF----AEAYLNLGEAL 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 380 MQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPKFALAQAQKCFALNSELKKEASESM 459
Cdd:COG3914  157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                        170       180
                 ....*....|....*....|.
gi 672070887 460 CHCAIGLDSQPSCPSLLLVLS 480
Cdd:COG3914  237 EELLAALARGPSELSPFALLY 257
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 114-247 3.51e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 54.74  E-value: 3.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG2956  142 ENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA-----LLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 672070887 194 RRAKAHEKLDNKKECLEDVTAvCILEGFQNEQSMLLADKVLKLLGKENAKEKYK 247
Cdd:COG2956  217 RLAELYEKLGDPEEALELLRK-ALELDPSDDLLLALADLLERKEGLEAALALLE 269
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
320-435 4.31e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 53.77  E-value: 4.31e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 320 SKEIDAQGKYMAEALLLRATFYLLIGSANAAKPDLDKVISLKEANvklrANALIKRGTMCMQQQQPMLSTQDFNMAAEID 399
Cdd:COG4785   62 RIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL----AEAYNNRGLAYLLLGDYDAALEDFDRALELD 137

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 672070887 400 PMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPK 435
Cdd:COG4785  138 PDYAYAYLNRGIALYYLGRYELAIADLEKALELDPN 173
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 114-211 4.90e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.73  E-value: 4.90e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG4783   36 DNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEA-----RLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYL 110

                         90
                 ....*....|....*...
gi 672070887 194 RRAKAHEKLDNKKECLED 211
Cdd:COG4783  111 RLARAYRALGRPDEAIAA 128
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
300-447 5.32e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.86  E-value: 5.32e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 300 YLKAKQYMEEENYDKIISECSKEIDAQGKYmAEALLLRATFYLLIGSANAAKPDLDKVISLKEANvklrANALIKRGTMC 379
Cdd:COG0457   12 NNLGLAYRRLGRYEEAIEDYEKALELDPDD-AEALYNLGLAYLRLGRYEEALADYEQALELDPDD----AEALNNLGLAL 86

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672070887 380 MQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPKFALAQAQKCFAL 447
Cdd:COG0457   87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIAL 154
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
331-467 6.57e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.47  E-value: 6.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 331 AEALLLRATFYLLIGSANAAKPDLDKVISLKEANvklrANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRG 410
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDD----AEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 672070887 411 QLKILLDLVEEAVADFDACIRLRPKFALAQAQKCFALNSELKKEASESMCHCAIGLD 467
Cdd:COG0457   84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD 140
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
126-207 6.86e-08

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.17  E-value: 6.86e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 126 YFKAGKYEQAIQCYTEAISLcptekNADLSTFYQNRAAAFEQLQKWKEvAQDCTKAVELNPKYVKALFRRAKAHEKLDNK 205
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALEL-----DPDNADALNNLGLLLLEQGRYDE-AIALEKALKLDPNNAEALLNLAELLLELGDY 75


                 ..
gi 672070887 206 KE 207
Cdd:COG3063   76 DE 77
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 125-207 1.78e-07

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 49.60  E-value: 1.78e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 125 KYFKAGKYEQAIQCYTEAISLCPTEKNADLSTFYqnRAAAFEQLQKWKEVAQDCTKAVELNP---KYVKALFRRAKAHEK 201
Cdd:COG1729    2 ALLKAGDYDEAIAAFKAFLKRYPNSPLAPDALYW--LGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLE 79


                 ....*.
gi 672070887 202 LDNKKE 207
Cdd:COG1729   80 LGDYDK 85
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 114-192 2.32e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.46  E-value: 2.32e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPteknaDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKAL 192
Cdd:COG3914  144 DFAEAYLNLGEALRRLGRLEEAIAALRRALELDP-----DNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAH 217
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
290-443 3.23e-07

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 3.23e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 290 EALEVKENSG---YLKAKQYMEEENYDKIISECSKEIDAQGKYmAEALLLRATFYLLIGSANAAKPDLDKVISLKEANvk 366
Cdd:COG0457   33 KALELDPDDAealYNLGLAYLRLGRYEEALADYEQALELDPDD-AEALNNLGLALQALGRYEEALEDYDKALELDPDD-- 109

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672070887 367 lrANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPKFALAQAQK 443
Cdd:COG0457  110 --AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALG 184
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 300-436 5.44e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 5.44e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 300 YLKAKQYMEEENYDKIISECSKEIDAQGKYmAEALLLRATFYLLIGSANAAKPDLDKVISLKEANvklrANALIKRGTMC 379
Cdd:COG4783    8 YALAQALLLAGDYDEAEALLEKALELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDE----PEARLNLGLAL 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 672070887 380 MQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPKF 436
Cdd:COG4783   83 LKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 114-210 6.77e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 48.46  E-value: 6.77e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPteKNADLstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG4235   15 NDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDP--DNADA---LLDLAEALLAAGDTEEAEELLERALALDPDNPEALY 89

                         90
                 ....*....|....*..
gi 672070887 194 RRAKAHEKLDNKKECLE 210
Cdd:COG4235   90 LLGLAAFQQGDYAEAIA 106
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 114-207 1.25e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 1.25e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG2956   74 DRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEA-----LRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYC 148

                         90
                 ....*....|....
gi 672070887 194 RRAKAHEKLDNKKE 207
Cdd:COG2956  149 ELAELYLEQGDYDE 162
TPR_1 pfam00515
Tetratricopeptide repeat;
116-148 1.26e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 44.72  E-value: 1.26e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 672070887  116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPT 148
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
330-439 1.58e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.14  E-value: 1.58e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 330 MAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVK---------LRANALIKRGTMCMQQQQPMLSTQDFNMAAEIDP 400
Cdd:COG4785   25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDP 104

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 672070887 401 MNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPKFALA 439
Cdd:COG4785  105 DLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYA 143
PLN03088 PLN03088
SGT1, suppressor of G2 allele of SKP1; Provisional
 116-203 2.00e-06

SGT1, suppressor of G2 allele of SKP1; Provisional


Pssm-ID: 215568 [Multi-domain]  Cd Length: 356  Bit Score: 49.79  E-value: 2.00e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTekNADLstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRR 195
Cdd:PLN03088   2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN--NAEL---YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76


                 ....*...
gi 672070887 196 AKAHEKLD 203
Cdd:PLN03088  77 GTACMKLE 84
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 114-210 3.29e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 3.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEknadlSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG2956  108 DDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPEN-----AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALL 182

                         90
                 ....*....|....*..
gi 672070887 194 RRAKAHEKLDNKKECLE 210
Cdd:COG2956  183 LLAELYLEQGDYEEAIA 199
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 116-148 4.08e-06

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 4.08e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 672070887   116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPT 148
Cdd:smart00028   1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 126-207 6.56e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 46.11  E-value: 6.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 126 YFKAGKYEQAIQCYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNK 205
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPEL-----YYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQD 138


                 ..
gi 672070887 206 KE 207
Cdd:COG5010  139 DE 140
TPR_11 pfam13414
TPR repeat;
123-169 6.72e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 42.84  E-value: 6.72e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 672070887  123 GNKYFKAGKYEQAIQCYTEAISLCPteKNADlstFYQNRAAAFEQLQ 169
Cdd:pfam13414   1 GDAYYEQGKYEEAIEAYKKALKLDP--DNPE---AYYNLGLAYYKLG 42
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
369-469 1.05e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.92  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 369 ANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPKFALAQAQKCFALN 448
Cdd:COG0457    8 AEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQ 87

                         90       100
                 ....*....|....*....|.
gi 672070887 449 SELKKEASESMCHCAIGLDSQ 469
Cdd:COG0457   88 ALGRYEEALEDYDKALELDPD 108
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 115-207 2.49e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 44.03  E-value: 2.49e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 115 RAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFR 194
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA-----FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLN 77

                         90
                 ....*....|...
gi 672070887 195 RAKAHEKLDNKKE 207
Cdd:COG4783   78 LGLALLKAGDYDE 90
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 331-441 4.19e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 43.07  E-value: 4.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 331 AEALLLRATFYLLIGSANAAKPDLDKVISLKEANvklrANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRG 410
Cdd:COG4235   17 AEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDN----ADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLG 92

                         90       100       110
                 ....*....|....*....|....*....|.
gi 672070887 411 QLKILLDLVEEAVADFDACIRLRPKFALAQA 441
Cdd:COG4235   93 LAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 114-188 1.17e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 42.10  E-value: 1.17e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPteknaDLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKY 188
Cdd:COG4783   70 DEPEARLNLGLALLKAGDYDEALALLEKALKLDP-----EHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
151-211 1.80e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 43.07  E-value: 1.80e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 672070887 151 NADLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLED 211
Cdd:COG0457    4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALAD 64
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 114-210 2.26e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.79  E-value: 2.26e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALF 193
Cdd:COG2956   40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEA-----LLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALR 114

                         90
                 ....*....|....*..
gi 672070887 194 RRAKAHEKLDNKKECLE 210
Cdd:COG2956  115 LLAEIYEQEGDWEKAIE 131
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 122-434 3.01e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 42.41  E-value: 3.01e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 122 KGNKYFKAGKYEQAIQCYTEAIslcptEKNADLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEK 201
Cdd:COG2956   14 KGLNYLLNGQPDKAIDLLEEAL-----ELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 202 LDnkkecledvtavcilegfqneqsmlLADKVLKLLgkenakekyknreplmpspqfiksyfssftddiisqpmlkgEKS 281
Cdd:COG2956   89 AG-------------------------LLDRAEELL-----------------------------------------EKL 102

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 282 DEDKDKEGEALevkensgYLKAKQYMEEENYDKIIsECSKEIDAQGKYMAEALLLRATFYLLIGSANAAKPDLDKVISLK 361
Cdd:COG2956  103 LELDPDDAEAL-------RLLAEIYEQEGDWEKAI-EVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLD 174

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 672070887 362 EANVKlranALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRP 434
Cdd:COG2956  175 PDCAR----ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP 243
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 116-148 3.21e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.89  E-value: 3.21e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 672070887  116 AQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPT 148
Cdd:pfam07719   1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 114-186 3.23e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 3.23e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNP 186
Cdd:COG5010   86 NNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNA-----YSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
147-215 7.25e-04

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 41.05  E-value: 7.25e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 672070887 147 PTEKNADLSTFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTAV 215
Cdd:COG4785   65 RALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRA 133
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 322-479 9.59e-04

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 41.90  E-value: 9.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 322 EIDAQGKYMAEALLLRATFYLLIGSANAAKPDLDkvISLKEANVKLRANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPM 401
Cdd:COG3914   33 EAAALAAALGLALLLLAALAEAAAAALLALAAGE--AAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPD 110

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672070887 402 NSDVYHHRGQLKILLDLVEEAVADFDACIRLRPKFALAQAQKCFALNSElkKEASESMCHCAIGLDSQPSCPSLLLVL 479
Cdd:COG3914  111 NAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL--GRLEEAIAALRRALELDPDNAEALNNL 186
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
341-435 2.24e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 37.46  E-value: 2.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 341 YLLIGSANAAKPDLDKVISLKEANvklrANALIKRGTMCMQQQQPMLStQDFNMAAEIDPMNSDVYHHRGQLKILLDLVE 420
Cdd:COG3063    2 YLKLGDLEEAEEYYEKALELDPDN----ADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYD 76

                         90
                 ....*....|....*
gi 672070887 421 EAVADFDACIRLRPK 435
Cdd:COG3063   77 EALAYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 329-467 2.69e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 38.40  E-value: 2.69e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887 329 YMAEALLLRATFYLLIGSANAAKPDLDKVISLKEANVKLRANALIKRGTMCMQQQQPMLSTQDFNMAAEIDPMNSDVYHH 408
Cdd:COG5010   14 LLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYN 93

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 672070887 409 RGQLKILLDLVEEAVADFDACIRLRPKFALAQAQKCFALNSELKKEASESMCHCAIGLD 467
Cdd:COG5010   94 LALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTS 152
TPR_12 pfam13424
Tetratricopeptide repeat;
114-187 3.36e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 36.21  E-value: 3.36e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672070887  114 DRAQAAKNKGNKYFKAGKYEQAIQCYTEAISLC---PTEKNADLSTFYQNRAAAFEQLQKWKEvAQDC-TKAVELNPK 187
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrlLGPDHPLTATTLLNLGRLYLELGRYEE-ALELlERALALAEK 77
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
114-187 3.91e-03

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 3.91e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672070887 114 DRAQAAKNKGNKYFKAGKYEQAIQcYTEAISLCPTEKNAdlstfYQNRAAAFEQLQKWKEVAQDCTKAVELNPK 187
Cdd:COG3063   24 DNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEA-----LLNLAELLLELGDYDEALAYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 102-435 5.15e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 5.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  102 DGSGDSLEmSSLDRAQAAKNKGNK--------YFKAGKYEQAIQcYTEAISLCPTEKNADLSTFYQNRAAAFEQLQKWKe 173
Cdd:TIGR02917  69 LGDYAAAE-KELRKALSLGYPKNQvlpllaraYLLQGKFQQVLD-ELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQ- 145

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  174 vaQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNEQSMLLADKVLKLLGKENAKEKYknREPLM 253
Cdd:TIGR02917 146 --KSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAY--RKAIA 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  254 PSPQFIKSYFSSFTddiisqpMLKGEKSDEDKDKEGEALEVKENS----GYLKAKQYMEEENYDKIISECSKEIDAQGKY 329
Cdd:TIGR02917 222 LRPNNIAVLLALAT-------ILIEAGEFEEAEKHADALLKKAPNsplaHYLKALVDFQKKNYEDARETLQDALKSAPEY 294

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  330 MAEALLLRATFYLLiGSANAAKPDLDKV----------------ISLKEANVKlRANALIKR---------------GTM 378
Cdd:TIGR02917 295 LPALLLAGASEYQL-GNLEQAYQYLNQIlkyapnshqarrllasIQLRLGRVD-EAIATLSPalgldpddpaalsllGEA 372

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 672070887  379 CMQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPK 435
Cdd:TIGR02917 373 YLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE 429
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 300-439 9.16e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.53  E-value: 9.16e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  300 YLKAKQYMEEENYDKIISECSKEIDaQGKYMAEALLLRATFYLLIGSANAAKPDLDKVISLKEANvklRANALIKRGTMC 379
Cdd:TIGR02917  60 FLLGKIYLALGDYAAAEKELRKALS-LGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEG---AAELLALRGLAY 135

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 672070887  380 MQQQQPMLSTQDFNMAAEIDPMNSDVYHHRGQLKILLDLVEEAVADFDACIRLRPKFALA 439
Cdd:TIGR02917 136 LGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDA 195
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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