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Conserved domains on  [gi|672052572|ref|XP_008761926|]
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tudor domain-containing protein 7 isoform X4 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Tudor_TDRD7_rpt2 cd20428
second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
641-780 8.43e-94

second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


:

Pssm-ID: 410499  Cd Length: 140  Bit Score: 294.74  E-value: 8.43e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  641 YTNVKVTNICSDGTLYCQVPCKGLNKLNDLLHKTEDYFHCKHMTSEYFISLPFCGKICLFHCKGKWLRVEITNVHSSRAL 720
Cdd:cd20428     1 YTNVRVTNVCSDGTLYCQVPSKGLSKLNEILDKIEYYFHSRQMTSEYFVSLPFCGKICLARYKGKWARVEITNVHSSRAL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  721 DVQFLDSGNSTSVKVSELREIPPRFLQEMLAIPPQAIKCCLADLPQSIGMWTPDAVLWLR 780
Cdd:cd20428    81 DVHFLDTGTVASVKVSELREIPPPFLRELISIPPQALKCCLADLPLNIGMWTPDAVLWLR 140
Tudor_TDRD7_rpt3 cd20429
third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
918-1008 8.01e-57

third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


:

Pssm-ID: 410500  Cd Length: 91  Bit Score: 190.78  E-value: 8.01e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  918 QPWQEIHKLEVLMEEMILYYSVSEERHIAVERDQVYAAKVENKWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLV 997
Cdd:cd20429     1 QPWQELHKLEVLMEEMILYYNKTEERPVAIEKNKVYAAKIENNWYRVLVKGILTNGLVSVYELDYGKHELVSIRKVQPLI 80
                          90
                  ....*....|.
gi 672052572  998 DVFRKLPFQAV 1008
Cdd:cd20429    81 EKFRQLPFQAI 91
Tudor_SF super family cl02573
Tudor domain superfamily; The Tudor domain is a conserved structural domain, originally ...
480-577 1.95e-50

Tudor domain superfamily; The Tudor domain is a conserved structural domain, originally identified in the Tudor protein of Drosophila, that adopts a beta-barrel-like core structure containing four short beta-strands followed by an alpha-helical region. It binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions. Tudor domain-containing proteins may mediate protein-protein interactions required for various DNA-templated biological processes, such as RNA metabolism, as well as histone modification and the DNA damage response. Members of this superfamily contain one or more copies of the Tudor domain.


The actual alignment was detected with superfamily member cd20427:

Pssm-ID: 470623  Cd Length: 98  Bit Score: 172.61  E-value: 1.95e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  480 ELMEDEMKEYYSRNPRVTPIQTVHVGQLLAVNAEEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLS 559
Cdd:cd20427     1 EQMEDEMKEFYSKSSTAMCLRSPSVGQLVAVKAEEDAWLRAQVIEVEEDKVKVYYVDHGFSEVVERSKLFKLNKQFYSLP 80
                          90
                  ....*....|....*...
gi 672052572  560 FQATKCKLAGLEILNDDP 577
Cdd:cd20427    81 FQATKCKLAGLEPFSDDP 98
LOTUS_1_TDRD7 cd09986
The first LOTUS domain on Tudor-containing protein 7 (TDRD7); The first LOTUS domain on ...
5-91 1.13e-49

The first LOTUS domain on Tudor-containing protein 7 (TDRD7); The first LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


:

Pssm-ID: 193600  Cd Length: 88  Bit Score: 169.99  E-value: 1.13e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572    5 DLVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEIVCYAVACTETARIA 84
Cdd:cd09986     2 ELVKKMLRAVLQSSKGGVSLPRLQGEYKELTGEQIPFKQLGYHTLDALLRSMPSVVRLERSRSGEVMCFASLCNETAHIA 81

                  ....*..
gi 672052572   85 QLVARQR 91
Cdd:cd09986    82 KLVARQR 88
LOTUS_2_TDRD7 cd09973
The second LOTUS domain on Tudor-containing protein 7 (TDRD7); The second LOTUS domain on ...
223-289 6.96e-35

The second LOTUS domain on Tudor-containing protein 7 (TDRD7); The second LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


:

Pssm-ID: 193587  Cd Length: 68  Bit Score: 127.16  E-value: 6.96e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672052572  223 MDEVQNRIKEILDKHNNGIWISKLPHFYKEFYKEDLNQGVLQQFEHWPHICTVEKPCGGGQ-DLLLYP 289
Cdd:cd09973     1 VQEVQNRIKELLNKYSNGVWLSKLPQLYKEMYKEDLSTEVLKQLESWPHVCTVEKPHSGDPtDLLLYP 68
LOTUS_3_TDRD7 cd09974
The third LOTUS domain on Tudor-containing protein 7 (TDRD7); The third LOTUS domain on ...
328-392 1.94e-32

The third LOTUS domain on Tudor-containing protein 7 (TDRD7); The third LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


:

Pssm-ID: 193588  Cd Length: 67  Bit Score: 120.21  E-value: 1.94e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672052572  328 DVKEKVAELLGKYSSGLWASALPKAFEDMYKVKFPEDALKNLASLSDVCTINYISGNTQKAILYA 392
Cdd:cd09974     3 DLKEKVAQLLVKYSNGLWASALPKLFEDAYKVKFPEHILENLSLLTDICIVDYPSGNPQKAILYS 67
 
Name Accession Description Interval E-value
Tudor_TDRD7_rpt2 cd20428
second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
641-780 8.43e-94

second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410499  Cd Length: 140  Bit Score: 294.74  E-value: 8.43e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  641 YTNVKVTNICSDGTLYCQVPCKGLNKLNDLLHKTEDYFHCKHMTSEYFISLPFCGKICLFHCKGKWLRVEITNVHSSRAL 720
Cdd:cd20428     1 YTNVRVTNVCSDGTLYCQVPSKGLSKLNEILDKIEYYFHSRQMTSEYFVSLPFCGKICLARYKGKWARVEITNVHSSRAL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  721 DVQFLDSGNSTSVKVSELREIPPRFLQEMLAIPPQAIKCCLADLPQSIGMWTPDAVLWLR 780
Cdd:cd20428    81 DVHFLDTGTVASVKVSELREIPPPFLRELISIPPQALKCCLADLPLNIGMWTPDAVLWLR 140
Tudor_TDRD7_rpt3 cd20429
third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
918-1008 8.01e-57

third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410500  Cd Length: 91  Bit Score: 190.78  E-value: 8.01e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  918 QPWQEIHKLEVLMEEMILYYSVSEERHIAVERDQVYAAKVENKWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLV 997
Cdd:cd20429     1 QPWQELHKLEVLMEEMILYYNKTEERPVAIEKNKVYAAKIENNWYRVLVKGILTNGLVSVYELDYGKHELVSIRKVQPLI 80
                          90
                  ....*....|.
gi 672052572  998 DVFRKLPFQAV 1008
Cdd:cd20429    81 EKFRQLPFQAI 91
Tudor_TDRD7_rpt1 cd20427
first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
480-577 1.95e-50

first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410498  Cd Length: 98  Bit Score: 172.61  E-value: 1.95e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  480 ELMEDEMKEYYSRNPRVTPIQTVHVGQLLAVNAEEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLS 559
Cdd:cd20427     1 EQMEDEMKEFYSKSSTAMCLRSPSVGQLVAVKAEEDAWLRAQVIEVEEDKVKVYYVDHGFSEVVERSKLFKLNKQFYSLP 80
                          90
                  ....*....|....*...
gi 672052572  560 FQATKCKLAGLEILNDDP 577
Cdd:cd20427    81 FQATKCKLAGLEPFSDDP 98
LOTUS_1_TDRD7 cd09986
The first LOTUS domain on Tudor-containing protein 7 (TDRD7); The first LOTUS domain on ...
5-91 1.13e-49

The first LOTUS domain on Tudor-containing protein 7 (TDRD7); The first LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193600  Cd Length: 88  Bit Score: 169.99  E-value: 1.13e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572    5 DLVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEIVCYAVACTETARIA 84
Cdd:cd09986     2 ELVKKMLRAVLQSSKGGVSLPRLQGEYKELTGEQIPFKQLGYHTLDALLRSMPSVVRLERSRSGEVMCFASLCNETAHIA 81

                  ....*..
gi 672052572   85 QLVARQR 91
Cdd:cd09986    82 KLVARQR 88
LOTUS_2_TDRD7 cd09973
The second LOTUS domain on Tudor-containing protein 7 (TDRD7); The second LOTUS domain on ...
223-289 6.96e-35

The second LOTUS domain on Tudor-containing protein 7 (TDRD7); The second LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193587  Cd Length: 68  Bit Score: 127.16  E-value: 6.96e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672052572  223 MDEVQNRIKEILDKHNNGIWISKLPHFYKEFYKEDLNQGVLQQFEHWPHICTVEKPCGGGQ-DLLLYP 289
Cdd:cd09973     1 VQEVQNRIKELLNKYSNGVWLSKLPQLYKEMYKEDLSTEVLKQLESWPHVCTVEKPHSGDPtDLLLYP 68
LOTUS_3_TDRD7 cd09974
The third LOTUS domain on Tudor-containing protein 7 (TDRD7); The third LOTUS domain on ...
328-392 1.94e-32

The third LOTUS domain on Tudor-containing protein 7 (TDRD7); The third LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193588  Cd Length: 67  Bit Score: 120.21  E-value: 1.94e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672052572  328 DVKEKVAELLGKYSSGLWASALPKAFEDMYKVKFPEDALKNLASLSDVCTINYISGNTQKAILYA 392
Cdd:cd09974     3 DLKEKVAQLLVKYSNGLWASALPKLFEDAYKVKFPEHILENLSLLTDICIVDYPSGNPQKAILYS 67
TUDOR pfam00567
Tudor domain;
900-1014 1.78e-29

Tudor domain;


Pssm-ID: 425754 [Multi-domain]  Cd Length: 117  Bit Score: 113.60  E-value: 1.78e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572   900 EHMDVYVPVACHPGHFVIQPWQEIHKLEVLMEEMILYYS--VSEERHIAVERDQVYAAKVENKWYRVLLKGILTNGLVSV 977
Cdd:pfam00567    1 STIDVVVSHIESPSTFYIQPKSDSKKLEKLTEELQEYYAskPPESLPPAVGDGCVAAFSEDGKWYRAKITESLDDGLVEV 80
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 672052572   978 YELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAG 1014
Cdd:pfam00567   81 LFIDYGNTETVPLSDLRPLPPELESLPPQAIKCQLAG 117
TUDOR pfam00567
Tudor domain;
640-763 8.29e-28

Tudor domain;


Pssm-ID: 425754 [Multi-domain]  Cd Length: 117  Bit Score: 108.98  E-value: 8.29e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572   640 MYTNVKVTNICSDGTLYCQvPCKGLNKLNDLLHKTEDYFHCKHMTSEYfiSLPFCGKICLFHCKGKWLRVEITNVHSSRA 719
Cdd:pfam00567    1 STIDVVVSHIESPSTFYIQ-PKSDSKKLEKLTEELQEYYASKPPESLP--PAVGDGCVAAFSEDGKWYRAKITESLDDGL 77
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 672052572   720 LDVQFLDSGNSTSVKVSELREIPPRFLQemlaIPPQAIKCCLAD 763
Cdd:pfam00567   78 VEVLFIDYGNTETVPLSDLRPLPPELES----LPPQAIKCQLAG 117
TUDOR pfam00567
Tudor domain;
451-569 1.46e-24

Tudor domain;


Pssm-ID: 425754 [Multi-domain]  Cd Length: 117  Bit Score: 99.35  E-value: 1.46e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572   451 ASPSVLVVELSNTNDVVIryVGKDYSAAQELMEDEMKEYYSRNPRVtPIQTVHVGQLLAVNAEEDAWLRAQII-STDENK 529
Cdd:pfam00567    1 STIDVVVSHIESPSTFYI--QPKSDSKKLEKLTEELQEYYASKPPE-SLPPAVGDGCVAAFSEDGKWYRAKITeSLDDGL 77
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 672052572   530 IKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAG 569
Cdd:pfam00567   78 VEVLFIDYGNTETVPLSDLRPLPPELESLPPQAIKCQLAG 117
OST-HTH pfam12872
OST-HTH/LOTUS domain; A predicted RNA-binding domain found in insect Oskar and vertebrate ...
10-72 2.06e-11

OST-HTH/LOTUS domain; A predicted RNA-binding domain found in insect Oskar and vertebrate TDRD5/TDRD7 proteins that nucleate or organize structurally related ribonucleoprotein (RNP) complexes, the polar granule and nuage, is poorly understood. The domain adopts the winged helix-turn- helix fold and bind RNA with a potential specificity for dsRNA.In eukaryotes this domain is often combined in the same polypeptide with protein-protein- or lipid- interaction domains that might play a role in anchoring these proteins to specific cytoskeletal structures. Thus, proteins with this domain might have a key role in the recognition and localization of dsRNA, including miRNAs, rasiRNAs and piRNAs hybridized to their targets. In other cases, this domain is fused to ubiquitin-binding, E3 ligase and ubiquitin-like domains indicating a previously under-appreciated role for ubiquitination in regulating the assembly and stability of nuage-like RNP complexes. Both bacteria and eukaryotes encode a conserved family of proteins that combines this predicted RNA-binding domain with a previously uncharacterized RNase domain belonging to the superfamily that includes the 5'->3' nucleases, PIN and NYN domains.


Pssm-ID: 463735  Cd Length: 64  Bit Score: 60.26  E-value: 2.06e-11
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672052572    10 MLRAVLQSHKNGIV-LPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEIVC 72
Cdd:pfam12872    1 ELISLLRSDPDGWAsLSELGSEYRKLFGEDFDPRNYGFSKLSDLLKAIPDVFEIEKRGGGGLVV 64
TUDOR smart00333
Tudor domain; Domain of unknown function present in several RNA-binding proteins. 10 copies in ...
695-745 2.75e-05

Tudor domain; Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).


Pssm-ID: 197660  Cd Length: 57  Bit Score: 42.65  E-value: 2.75e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|.
gi 672052572    695 GKICLFHCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELREIPPRF 745
Cdd:smart00333    7 DKVAARWEDGEWYRARIVKVDGEQLYEVFFIDYGNEEVVPPSDLRQLPEEL 57
TUDOR smart00333
Tudor domain; Domain of unknown function present in several RNA-binding proteins. 10 copies in ...
500-555 2.19e-04

Tudor domain; Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).


Pssm-ID: 197660  Cd Length: 57  Bit Score: 39.95  E-value: 2.19e-04
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572    500 QTVHVGQLLAVNAEEDAWLRAQIIS-TDENKIKVCYVDYGFCENIEKSKAYRLNPRF 555
Cdd:smart00333    1 PTFKVGDKVAARWEDGEWYRARIVKvDGEQLYEVFFIDYGNEEVVPPSDLRQLPEEL 57
 
Name Accession Description Interval E-value
Tudor_TDRD7_rpt2 cd20428
second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
641-780 8.43e-94

second Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410499  Cd Length: 140  Bit Score: 294.74  E-value: 8.43e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  641 YTNVKVTNICSDGTLYCQVPCKGLNKLNDLLHKTEDYFHCKHMTSEYFISLPFCGKICLFHCKGKWLRVEITNVHSSRAL 720
Cdd:cd20428     1 YTNVRVTNVCSDGTLYCQVPSKGLSKLNEILDKIEYYFHSRQMTSEYFVSLPFCGKICLARYKGKWARVEITNVHSSRAL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  721 DVQFLDSGNSTSVKVSELREIPPRFLQEMLAIPPQAIKCCLADLPQSIGMWTPDAVLWLR 780
Cdd:cd20428    81 DVHFLDTGTVASVKVSELREIPPPFLRELISIPPQALKCCLADLPLNIGMWTPDAVLWLR 140
Tudor_TDRD7_rpt3 cd20429
third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
918-1008 8.01e-57

third Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410500  Cd Length: 91  Bit Score: 190.78  E-value: 8.01e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  918 QPWQEIHKLEVLMEEMILYYSVSEERHIAVERDQVYAAKVENKWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLV 997
Cdd:cd20429     1 QPWQELHKLEVLMEEMILYYNKTEERPVAIEKNKVYAAKIENNWYRVLVKGILTNGLVSVYELDYGKHELVSIRKVQPLI 80
                          90
                  ....*....|.
gi 672052572  998 DVFRKLPFQAV 1008
Cdd:cd20429    81 EKFRQLPFQAI 91
Tudor_TDRD7_rpt1 cd20427
first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
480-577 1.95e-50

first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410498  Cd Length: 98  Bit Score: 172.61  E-value: 1.95e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  480 ELMEDEMKEYYSRNPRVTPIQTVHVGQLLAVNAEEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLS 559
Cdd:cd20427     1 EQMEDEMKEFYSKSSTAMCLRSPSVGQLVAVKAEEDAWLRAQVIEVEEDKVKVYYVDHGFSEVVERSKLFKLNKQFYSLP 80
                          90
                  ....*....|....*...
gi 672052572  560 FQATKCKLAGLEILNDDP 577
Cdd:cd20427    81 FQATKCKLAGLEPFSDDP 98
LOTUS_1_TDRD7 cd09986
The first LOTUS domain on Tudor-containing protein 7 (TDRD7); The first LOTUS domain on ...
5-91 1.13e-49

The first LOTUS domain on Tudor-containing protein 7 (TDRD7); The first LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193600  Cd Length: 88  Bit Score: 169.99  E-value: 1.13e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572    5 DLVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEIVCYAVACTETARIA 84
Cdd:cd09986     2 ELVKKMLRAVLQSSKGGVSLPRLQGEYKELTGEQIPFKQLGYHTLDALLRSMPSVVRLERSRSGEVMCFASLCNETAHIA 81

                  ....*..
gi 672052572   85 QLVARQR 91
Cdd:cd09986    82 KLVARQR 88
LOTUS_2_TDRD7 cd09973
The second LOTUS domain on Tudor-containing protein 7 (TDRD7); The second LOTUS domain on ...
223-289 6.96e-35

The second LOTUS domain on Tudor-containing protein 7 (TDRD7); The second LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193587  Cd Length: 68  Bit Score: 127.16  E-value: 6.96e-35
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672052572  223 MDEVQNRIKEILDKHNNGIWISKLPHFYKEFYKEDLNQGVLQQFEHWPHICTVEKPCGGGQ-DLLLYP 289
Cdd:cd09973     1 VQEVQNRIKELLNKYSNGVWLSKLPQLYKEMYKEDLSTEVLKQLESWPHVCTVEKPHSGDPtDLLLYP 68
LOTUS_3_TDRD7 cd09974
The third LOTUS domain on Tudor-containing protein 7 (TDRD7); The third LOTUS domain on ...
328-392 1.94e-32

The third LOTUS domain on Tudor-containing protein 7 (TDRD7); The third LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193588  Cd Length: 67  Bit Score: 120.21  E-value: 1.94e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672052572  328 DVKEKVAELLGKYSSGLWASALPKAFEDMYKVKFPEDALKNLASLSDVCTINYISGNTQKAILYA 392
Cdd:cd09974     3 DLKEKVAQLLVKYSNGLWASALPKLFEDAYKVKFPEHILENLSLLTDICIVDYPSGNPQKAILYS 67
LOTUS_TDRD_OSKAR cd09972
The first LOTUS domain in Oskar and Tudor-containing proteins 5 and 7; The first LOTUS domain ...
5-91 6.00e-32

The first LOTUS domain in Oskar and Tudor-containing proteins 5 and 7; The first LOTUS domain in Oskar and Tudor-containing proteins 5 and 7: The LOTUS containing proteins are germline-specific and are found in the nuage/polar granules of germ cells. Tudor-containing protein 5 and 7 belong to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD5 and TDRD7 are components of the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs), which are cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis. Oskar protein is a critical component of the pole plasm in the Drosophila oocyte, which is required for germ cell formation.The exact molecular function of LOTUS domain remains to be identified. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193586  Cd Length: 87  Bit Score: 119.52  E-value: 6.00e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572    5 DLVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEaSRSGEIVCYAVACTETARIA 84
Cdd:cd09972     2 EEVKKVLRSLLISSKGGLTLSELERDYRELEGEPIPYRKLGYSSLEDFLRSIPDVVTVR-SSGGEVLVKAVADEKTAHIA 80

                  ....*..
gi 672052572   85 QLVARQR 91
Cdd:cd09972    81 SLVAKQK 87
TUDOR pfam00567
Tudor domain;
900-1014 1.78e-29

Tudor domain;


Pssm-ID: 425754 [Multi-domain]  Cd Length: 117  Bit Score: 113.60  E-value: 1.78e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572   900 EHMDVYVPVACHPGHFVIQPWQEIHKLEVLMEEMILYYS--VSEERHIAVERDQVYAAKVENKWYRVLLKGILTNGLVSV 977
Cdd:pfam00567    1 STIDVVVSHIESPSTFYIQPKSDSKKLEKLTEELQEYYAskPPESLPPAVGDGCVAAFSEDGKWYRAKITESLDDGLVEV 80
                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 672052572   978 YELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAG 1014
Cdd:pfam00567   81 LFIDYGNTETVPLSDLRPLPPELESLPPQAIKCQLAG 117
TUDOR pfam00567
Tudor domain;
640-763 8.29e-28

Tudor domain;


Pssm-ID: 425754 [Multi-domain]  Cd Length: 117  Bit Score: 108.98  E-value: 8.29e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572   640 MYTNVKVTNICSDGTLYCQvPCKGLNKLNDLLHKTEDYFHCKHMTSEYfiSLPFCGKICLFHCKGKWLRVEITNVHSSRA 719
Cdd:pfam00567    1 STIDVVVSHIESPSTFYIQ-PKSDSKKLEKLTEELQEYYASKPPESLP--PAVGDGCVAAFSEDGKWYRAKITESLDDGL 77
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....
gi 672052572   720 LDVQFLDSGNSTSVKVSELREIPPRFLQemlaIPPQAIKCCLAD 763
Cdd:pfam00567   78 VEVLFIDYGNTETVPLSDLRPLPPELES----LPPQAIKCQLAG 117
TUDOR pfam00567
Tudor domain;
451-569 1.46e-24

Tudor domain;


Pssm-ID: 425754 [Multi-domain]  Cd Length: 117  Bit Score: 99.35  E-value: 1.46e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572   451 ASPSVLVVELSNTNDVVIryVGKDYSAAQELMEDEMKEYYSRNPRVtPIQTVHVGQLLAVNAEEDAWLRAQII-STDENK 529
Cdd:pfam00567    1 STIDVVVSHIESPSTFYI--QPKSDSKKLEKLTEELQEYYASKPPE-SLPPAVGDGCVAAFSEDGKWYRAKITeSLDDGL 77
                           90       100       110       120
                   ....*....|....*....|....*....|....*....|
gi 672052572   530 IKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAG 569
Cdd:pfam00567   78 VEVLFIDYGNTETVPLSDLRPLPPELESLPPQAIKCQLAG 117
LOTUS_1_TDRD5 cd09985
The first LOTUS domain on Tudor-containing protein 5 (TDRD5); The first LOTUS domain on ...
6-94 1.54e-13

The first LOTUS domain on Tudor-containing protein 5 (TDRD5); The first LOTUS domain on Tudor-containing protein 5 (TDRD5): TDRD5 contains three N-terminal LOTUS domains and a C-terminal Tudor domain. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD5 is a component of the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs), which are cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis. The exact molecular function of LOTUS domain on TDRD5 remains to be identified. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193599  Cd Length: 95  Bit Score: 67.49  E-value: 1.54e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572    6 LVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEIVCYAVACTETARIAQ 85
Cdd:cd09985     7 RLKKDVRSLLISSKNGLTPEQLEQDYLAMVGSPLPLRSLGFRSTMELVLDMPDVVRVHPQLDGTVILKAVGDETTKGIED 86

                  ....*....
gi 672052572   86 LVARQRTSK 94
Cdd:cd09985    87 LVSKQRDSK 95
LOTUS cd08824
LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and ...
5-72 3.10e-13

LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7. The LOTUS containing proteins are germline-specific and are found in the nuage/polar granules of germ cells. Tudor-containing protein 5 and 7 belong to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD5 and TDRD7 are components of the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs), which are cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis. Oskar protein is a critical component of the pole plasm in the Drosophila oocyte, which is required for germ cell formation. Limkain b1 is a novel human autoantigen, localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif. The exact molecular function of LOTUS domain remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193585 [Multi-domain]  Cd Length: 70  Bit Score: 65.72  E-value: 3.10e-13
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672052572    5 DLVSKMLRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEIVC 72
Cdd:cd08824     2 KQLAKQLRSLLQSYPGGLPLSKLPQLYKKKFGKPLDLSEYGFSKLSDLLEALPGVVIVLSQGGERIVS 69
Tudor_TDRD2 cd20412
Tudor domain found in Tudor domain-containing protein 2 (TDRD2) and similar proteins; TDRD2, ...
925-1008 8.06e-12

Tudor domain found in Tudor domain-containing protein 2 (TDRD2) and similar proteins; TDRD2, also called Tudor and KH domain-containing protein (TDRKH), participates in the primary piwi-interacting RNA (piRNA) biogenesis pathway and is required during spermatogenesis to repress transposable elements and prevent their mobilization, which is essential for germline integrity. The family also includes the TDRD2 homolog found in Drosophila melanogaster (dTDRKH), which is also called partner of PIWIs protein, or PAPI, and is involved in Zucchini-mediated piRNA 3'-end maturation. TDRD2 contains two KH domains and one Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410483  Cd Length: 95  Bit Score: 62.31  E-value: 8.06e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  925 KLEVLMEEMILYYSVSEERHI--AVERDQVYAA--KVENKWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLVDVF 1000
Cdd:cd20412     5 QLDKLVQEMTQYYESEENRHTllTVQVGDIVAApfRHDGSWYRARVLGFLENGNLDLYFVDYGDSGYVPLEDLRALRSDF 84

                  ....*...
gi 672052572 1001 RKLPFQAV 1008
Cdd:cd20412    85 LSLPFQAI 92
Tudor_TDRD5 cd20419
Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins; TDRD5 is ...
905-1012 1.93e-11

Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins; TDRD5 is an RNA-binding protein directly associated with piRNA precursors. It is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis. TDRD5 participates in the repression of transposable elements and prevents their mobilization, which is essential for germline integrity. TDRD5 contains three LOTUS domains and one Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410490  Cd Length: 118  Bit Score: 62.08  E-value: 1.93e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  905 YVPVACHPGHFVIQPWQEIH--KLEVLMEEMILYYSVSE--ERHIAVER----DQVYAAKVENK--WYRVLLKGILTNGL 974
Cdd:cd20419     1 FVEYIESPSQFYVRFYSKDTseMLEDMMIEMRRCYSNEHvsERYVMPEAfiqpGQVCCVRIPEDvwWYRVIIHQVLNKQE 80
                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 672052572  975 VSVYELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQL 1012
Cdd:cd20419    81 VEVFYPDFGDIGTVQKSRLRFLKCCYSKLPAQAIPASL 118
OST-HTH pfam12872
OST-HTH/LOTUS domain; A predicted RNA-binding domain found in insect Oskar and vertebrate ...
10-72 2.06e-11

OST-HTH/LOTUS domain; A predicted RNA-binding domain found in insect Oskar and vertebrate TDRD5/TDRD7 proteins that nucleate or organize structurally related ribonucleoprotein (RNP) complexes, the polar granule and nuage, is poorly understood. The domain adopts the winged helix-turn- helix fold and bind RNA with a potential specificity for dsRNA.In eukaryotes this domain is often combined in the same polypeptide with protein-protein- or lipid- interaction domains that might play a role in anchoring these proteins to specific cytoskeletal structures. Thus, proteins with this domain might have a key role in the recognition and localization of dsRNA, including miRNAs, rasiRNAs and piRNAs hybridized to their targets. In other cases, this domain is fused to ubiquitin-binding, E3 ligase and ubiquitin-like domains indicating a previously under-appreciated role for ubiquitination in regulating the assembly and stability of nuage-like RNP complexes. Both bacteria and eukaryotes encode a conserved family of proteins that combines this predicted RNA-binding domain with a previously uncharacterized RNase domain belonging to the superfamily that includes the 5'->3' nucleases, PIN and NYN domains.


Pssm-ID: 463735  Cd Length: 64  Bit Score: 60.26  E-value: 2.06e-11
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672052572    10 MLRAVLQSHKNGIV-LPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSGEIVC 72
Cdd:pfam12872    1 ELISLLRSDPDGWAsLSELGSEYRKLFGEDFDPRNYGFSKLSDLLKAIPDVFEIEKRGGGGLVV 64
LOTUS_2_TDRD7 cd09973
The second LOTUS domain on Tudor-containing protein 7 (TDRD7); The second LOTUS domain on ...
326-392 5.45e-11

The second LOTUS domain on Tudor-containing protein 7 (TDRD7); The second LOTUS domain on Tudor-containing protein 7 (TDRD7): TDRD7 contains three N-terminal LOTUS domains and three Tudor domain repeats at the C-terminus. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD7 together with TDRD1/MTR-1, TDRD5 and TDRD6 forms a ribonucleoprotein complex in the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs) involving in RNA processing for spermatogenesis. TDRD7 is functionally essential for the differentiation of germ cells. The exact molecular function of LOTUS domain on TDRD7 remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193587  Cd Length: 68  Bit Score: 59.37  E-value: 5.45e-11
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672052572  326 MPDVKEKVAELLGKYSSGLWASALPKAFEDMYKVKFPEDALKNLASLSDVCTINYI-SGNTQKAILYA 392
Cdd:cd09973     1 VQEVQNRIKELLNKYSNGVWLSKLPQLYKEMYKEDLSTEVLKQLESWPHVCTVEKPhSGDPTDLLLYP 68
Tudor_TDRD6_rpt7 cd20426
seventh Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
684-776 6.73e-11

seventh Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the seventh one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410497  Cd Length: 140  Bit Score: 61.36  E-value: 6.73e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  684 TSEYFISLPFCGK--ICLFHCKGKWLRVEITNVHSSRaLDVQFLDSGNSTSVKVSELREIPprflQEMLAIPPQAIKCCL 761
Cdd:cd20426    39 DRGNFIPSIYVGDpcIVKYSEDNHWYRALVTKINDNL-VSVRFVDYGNEEDVVREQVRALP----SELLKIPVQAFPCCL 113
                          90
                  ....*....|....*
gi 672052572  762 ADLPQSIGMWTPDAV 776
Cdd:cd20426   114 SGFNLSEGLWSDEAN 128
Tudor_TDRD2 cd20412
Tudor domain found in Tudor domain-containing protein 2 (TDRD2) and similar proteins; TDRD2, ...
476-565 1.61e-10

Tudor domain found in Tudor domain-containing protein 2 (TDRD2) and similar proteins; TDRD2, also called Tudor and KH domain-containing protein (TDRKH), participates in the primary piwi-interacting RNA (piRNA) biogenesis pathway and is required during spermatogenesis to repress transposable elements and prevent their mobilization, which is essential for germline integrity. The family also includes the TDRD2 homolog found in Drosophila melanogaster (dTDRKH), which is also called partner of PIWIs protein, or PAPI, and is involved in Zucchini-mediated piRNA 3'-end maturation. TDRD2 contains two KH domains and one Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410483  Cd Length: 95  Bit Score: 58.85  E-value: 1.61e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  476 SAAQELMEDEMKEYYSRNPRVTPIQTVHVGQLLAVNAEEDA-WLRAQIISTDEN-KIKVCYVDYGFCENIEKSKAYRLNP 553
Cdd:cd20412     3 SLQLDKLVQEMTQYYESEENRHTLLTVQVGDIVAAPFRHDGsWYRARVLGFLENgNLDLYFVDYGDSGYVPLEDLRALRS 82
                          90
                  ....*....|..
gi 672052572  554 RFCSLSFQATKC 565
Cdd:cd20412    83 DFLSLPFQAIEC 94
Tudor_TDRD15_rpt4 cd20439
fourth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
643-761 2.37e-10

fourth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the fourth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410510  Cd Length: 125  Bit Score: 59.43  E-value: 2.37e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  643 NVKVTNICSDGTLYCQVPCKgLNKLNDLLHKTEDYFhcKHMTSEYFIslpfCGKICLFHCK--GKWLRVEITNVHSSRAL 720
Cdd:cd20439    13 DVKCSYVNSPGDFWCQLQTK-SSELKSLMKQIQSYY--LIHNDPYKH----GQIACVAKYSkdGKWYRAAVLKQVSAKEV 85
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 672052572  721 DVQFLDSGNSTSVKVSELREIPPRFLQemlaIPPQAIKCCL 761
Cdd:cd20439    86 DVIFVDYGNQERVLISDLRAIKPQFLL----LEGQAFRCSL 122
Tudor_TDRD15_rpt5 cd20440
fifth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
644-761 4.78e-10

fifth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the fifth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410511  Cd Length: 127  Bit Score: 58.24  E-value: 4.78e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  644 VKVTNICSDGTLYCQVP--CKGLNKLNDLLHKTEDYFHCKHMTSEYFislpfcgKICL--FHCKGKWLRVEITNVHSSRA 719
Cdd:cd20440    14 VYITHVYSPAKFYCQLDrnTEILEALMEKIAEISKLFNSQILDNCKT-------RLCLakYFEDGQWYRALAHPVESSSH 86
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 672052572  720 LDVQFLDSGNSTSVKVSELREIPPRFLqEMLAIPPQAIKCCL 761
Cdd:cd20440    87 LSVYFVDYGNKQIVEKNEVLPIPDTAV-DLLLTPMQAIKCCL 127
Tudor_TDRD5 cd20419
Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins; TDRD5 is ...
456-567 1.54e-09

Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins; TDRD5 is an RNA-binding protein directly associated with piRNA precursors. It is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis. TDRD5 participates in the repression of transposable elements and prevents their mobilization, which is essential for germline integrity. TDRD5 contains three LOTUS domains and one Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410490  Cd Length: 118  Bit Score: 56.69  E-value: 1.54e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  456 LVVELSNTNDVVIRYVGKDYSAAQELMEDEMKEYYSrNPRVT-----PIQTVHVGQLLAVNAEEDA-WLRAQIIST-DEN 528
Cdd:cd20419     1 FVEYIESPSQFYVRFYSKDTSEMLEDMMIEMRRCYS-NEHVSeryvmPEAFIQPGQVCCVRIPEDVwWYRVIIHQVlNKQ 79
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 672052572  529 KIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKL 567
Cdd:cd20419    80 EVEVFYPDFGDIGTVQKSRLRFLKCCYSKLPAQAIPASL 118
Tudor_TDRD4_rpt2 cd20415
second Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; ...
670-763 2.65e-08

second Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; TDRD4, also called RING finger protein 17 (RNF17), is a component of the mammalian germ cell nuage and is essential for spermiogenesis. It seems to be involved in the regulation of transcriptional activity of MYC. In vitro, TDRD4 inhibits the DNA-binding activity of Mad-MAX heterodimers. It can recruit Mad transcriptional repressors (MXD1, MXD3, MXD4 and MXI1) to the cytoplasm. TDRD4 also acts as a potential cancer/testis antigen in liver cancer. TDRD4 contains a RING finger and five Tudor domains. This model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410486  Cd Length: 96  Bit Score: 52.44  E-value: 2.65e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  670 LLHKTEDyFHCKHMTSEYFISLPFCGKIC--LFHcKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELREIPPRFlq 747
Cdd:cd20415     4 LTKKIQE-FYKEGDDGGLEILCPVQGQACvaLFE-DGAWYRARIIGLPGHREVEVKYVDFGNTATVTIKHVRKIKDDF-- 79
                          90
                  ....*....|....*.
gi 672052572  748 emLAIPPQAIKCCLAD 763
Cdd:cd20415    80 --LSLPEKARECRLAF 93
Tudor_TDRD12_rpt2 cd20435
second Tudor domain found in Tudor domain-containing protein 12 (TDRD12) and similar proteins; ...
471-562 8.80e-08

second Tudor domain found in Tudor domain-containing protein 12 (TDRD12) and similar proteins; TDRD12, also called ES cell-associated transcript 8 protein (ECAT8), is a putative ATP-dependent DEAD-like RNA helicase that is essential for germ cell development and maintenance. It acts as a unique piRNA biogenesis factor essential for secondary PIWI interacting RNA (piRNA) biogenesis. TDRD12 contains two Tudor domains, one at the N-terminus and the other at the C-terminal end. The model corresponds to the second/C-terminal one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410506  Cd Length: 134  Bit Score: 52.25  E-value: 8.80e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  471 VGKDYSAAQELMEDEMKEYYSRNPRVTPIQTVHVGQLLAVNAEEDAWLRAQIIS-------TDENKIKVCYVDYGFCENI 543
Cdd:cd20435    19 VTKSMSSTYLKLSMKLNMYYSDPSNRILHGKVKVGDLCAVEDENNLYHRVKVLEitekddkTKPREVLVKFIDEGRVETV 98
                          90
                  ....*....|....*....
gi 672052572  544 EKSKAYRLNPRFCSLSFQA 562
Cdd:cd20435    99 VVSQLLELPEELKSLPPQA 117
Tudor_TDRD1_rpt1 cd20408
first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; ...
911-1024 1.60e-07

first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; TDRD1, also called cancer/testis antigen 41.1 (CT41.1), plays a central role during spermatogenesis by participating in the repression transposable elements and preventing their mobilization, which is essential for germline integrity. It acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins, and governs the methylation and subsequent repression of transposons. TDRD1 contains four Tudor domains. This model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410479  Cd Length: 130  Bit Score: 51.22  E-value: 1.60e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  911 HPGHFVIQPW-----QEIHKLEVLMEEMilYYSVSEERHIAVERDQVYAAK--VENKWYRVLLKGI-LTNGLVSVYELDY 982
Cdd:cd20408     8 NPGEFYIQIYtlevlESLVKLTSQLKKT--YASVNNHKEYIPEVGEVCVAKysEDQNWYRALVQTVdVQQKKAGVFYIDY 85
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 672052572  983 GKHELVNIRKVQPLVDVFRKLPFQAVTAQLAGVKCSQ--WSEEA 1024
Cdd:cd20408    86 GNEETVPLNRIQPLKKDIELFPPCAIKCCLANVKPPSgsWSEEC 129
Tudor_TDRD6_rpt7 cd20426
seventh Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
905-1028 1.61e-07

seventh Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the seventh one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410497  Cd Length: 140  Bit Score: 51.73  E-value: 1.61e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  905 YVPVACHPGHFVIQ-PWQEIHKLEVLMEEMilyysvseERHIAVERDQVYAAKV----------ENKWYRVLLKGILTNg 973
Cdd:cd20426     4 YATAVDSPEYFWCQfATEKIQCLAVKVQEA--------GEQVADRGNFIPSIYVgdpcivkyseDNHWYRALVTKINDN- 74
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572  974 LVSVYELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAGVKCSQ--WSEEASMVF 1028
Cdd:cd20426    75 LVSVRFVDYGNEEDVVREQVRALPSELLKIPVQAFPCCLSGFNLSEglWSDEANDYF 131
Tudor_dTUD-like cd20379
Tudor domain found in Drosophila melanogaster maternal protein Tudor (dTUD) and similar ...
950-996 2.24e-07

Tudor domain found in Drosophila melanogaster maternal protein Tudor (dTUD) and similar proteins; dTUD is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation. It contains 11 Tudor domains. The family also includes mitochondrial A-kinase anchor protein 1 (AKAP1) and Tudor domain-containing proteins (TDRDs). AKAP1, also called A-kinase anchor protein 149 kDa (AKAP 149), or dual specificity A-kinase-anchoring protein 1 (D-AKAP-1), or protein kinase A-anchoring protein 1 (PRKA1), or Spermatid A-kinase anchor protein 84 (S-AKAP84), is found in mitochondria and in the endoplasmic reticulum-nuclear envelope where it anchors protein kinases, phosphatases, and a phosphodiesterase. It regulates multiple cellular processes governing mitochondrial homeostasis and cell viability. AKAP1 binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane. TDRDs have diverse biological functions and may contain one or more copies of the Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410450  Cd Length: 50  Bit Score: 48.28  E-value: 2.24e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 672052572  950 DQVYAAKVE--NKWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPL 996
Cdd:cd20379     2 GDLCAAKYEedGKWYRARVLEVLSNDKVEVFFVDYGNTETVPLSDLRPL 50
Tudor_TDRD15_rpt2 cd20437
second Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
644-763 2.50e-07

second Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410508  Cd Length: 120  Bit Score: 50.49  E-value: 2.50e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  644 VKVTNICSDGTLYCQVPC--KGLNKLNDLLhktedYFHCKHMTSEYFISLPFCGKICLFHCK-GKWLRVEITNVHSSRAL 720
Cdd:cd20437     7 VKITAAVSPSKFYCQLLSwePELSKLTTQM-----TLHYESVSKELNPSCENFGLLCAAKGKdGQWHRGFLQQLLPPSQV 81
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 672052572  721 DVQFLDSGNSTSVKVSELREIPPRFlqemLAIPPQAIKCCLAD 763
Cdd:cd20437    82 KVWFIDYGNSEAVSSHSVLKLPPDF----FSLPLMSFPCSLSC 120
Tudor_TDRD7_rpt1 cd20427
first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; ...
927-1014 2.69e-07

first Tudor domain found in Tudor domain-containing protein 7 (TDRD7) and similar proteins; TDRD7, also called PCTAIRE2-binding protein, or Tudor repeat associator with PCTAIRE-2 (Trap), is a component of specific cytoplasmic RNA granules involved in post-transcriptional regulation of specific genes: probably acts by binding to specific mRNAs and regulating their translation. It is required for lens transparency during lens development, by regulating translation of genes such as CRYBB3 and HSPB1 in the developing lens. It is also essential for dynamic ribonucleoprotein (RNP) remodeling of chromatoid bodies during spermatogenesis. TDRD7 contains three Tudor domains. The model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410498  Cd Length: 98  Bit Score: 49.73  E-value: 2.69e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  927 EVLMEEMILYYSVSEERHI--AVERDQVYAAKV-ENKWYRVLLKGILTNGlVSVYELDYGKHELVNIRKVQPLVDVFRKL 1003
Cdd:cd20427     1 EQMEDEMKEFYSKSSTAMClrSPSVGQLVAVKAeEDAWLRAQVIEVEEDK-VKVYYVDHGFSEVVERSKLFKLNKQFYSL 79
                          90
                  ....*....|.
gi 672052572 1004 PFQAVTAQLAG 1014
Cdd:cd20427    80 PFQATKCKLAG 90
Tudor_TDRD6_rpt3 cd20422
third Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
702-780 2.71e-07

third Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410493  Cd Length: 135  Bit Score: 50.59  E-value: 2.71e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  702 CKGKW-----LRVEITNVhSSRALDVQFLDSGNSTSVKVSELREIPPRFLQemlaIPPQAIKCCLADLPQSIGMWTPDAV 776
Cdd:cd20422    56 CCAKWkedryYRAIVTAV-KGKMVEVFLVDRGNTEMVDWYDVKKLLPQFRE----LPALALKCCLADICPLGERWSPEAI 130

                  ....
gi 672052572  777 LWLR 780
Cdd:cd20422   131 SAFK 134
Tudor_dTUD-like cd20379
Tudor domain found in Drosophila melanogaster maternal protein Tudor (dTUD) and similar ...
695-741 5.22e-07

Tudor domain found in Drosophila melanogaster maternal protein Tudor (dTUD) and similar proteins; dTUD is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation. It contains 11 Tudor domains. The family also includes mitochondrial A-kinase anchor protein 1 (AKAP1) and Tudor domain-containing proteins (TDRDs). AKAP1, also called A-kinase anchor protein 149 kDa (AKAP 149), or dual specificity A-kinase-anchoring protein 1 (D-AKAP-1), or protein kinase A-anchoring protein 1 (PRKA1), or Spermatid A-kinase anchor protein 84 (S-AKAP84), is found in mitochondria and in the endoplasmic reticulum-nuclear envelope where it anchors protein kinases, phosphatases, and a phosphodiesterase. It regulates multiple cellular processes governing mitochondrial homeostasis and cell viability. AKAP1 binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane. TDRDs have diverse biological functions and may contain one or more copies of the Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410450  Cd Length: 50  Bit Score: 47.13  E-value: 5.22e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 672052572  695 GKICL--FHCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELREI 741
Cdd:cd20379     2 GDLCAakYEEDGKWYRARVLEVLSNDKVEVFFVDYGNTETVPLSDLRPL 50
Tudor_TDRD6_rpt4 cd20423
fourth Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
697-769 1.26e-06

fourth Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the fourth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410494  Cd Length: 80  Bit Score: 47.09  E-value: 1.26e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672052572  697 ICLFHC--KGKWLRVEITNVHSS-RALDVQFLDSGNSTSVKVSELREIPPRFLQemlaIPPQAIKCCLADLPQSIG 769
Cdd:cd20423     8 VCLAKYseDGKWCRALIDNVYEPvEMVEVTYVDYGNKELVSLKNLRSISEEFLK----LKAQAFRCSLYNLIQPSG 79
Tudor_TDRD1_rpt1 cd20408
first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; ...
646-776 2.05e-06

first Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; TDRD1, also called cancer/testis antigen 41.1 (CT41.1), plays a central role during spermatogenesis by participating in the repression transposable elements and preventing their mobilization, which is essential for germline integrity. It acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins, and governs the methylation and subsequent repression of transposons. TDRD1 contains four Tudor domains. This model corresponds to the first one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410479  Cd Length: 130  Bit Score: 48.13  E-value: 2.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  646 VTNICSDGTLYCQVPC-KGLNKLNDLLHKTEDYFHCKHMTSEYfisLPFCGKICL--FHCKGKWLRVEITNVHSS-RALD 721
Cdd:cd20408     3 VTEFKNPGEFYIQIYTlEVLESLVKLTSQLKKTYASVNNHKEY---IPEVGEVCVakYSEDQNWYRALVQTVDVQqKKAG 79
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 672052572  722 VQFLDSGNSTSVKVSELREIPPrflqEMLAIPPQAIKCCLADLPQSIGMWTPDAV 776
Cdd:cd20408    80 VFYIDYGNEETVPLNRIQPLKK----DIELFPPCAIKCCLANVKPPSGSWSEECI 130
Tudor_TDRD12_rpt2 cd20435
second Tudor domain found in Tudor domain-containing protein 12 (TDRD12) and similar proteins; ...
926-1016 2.38e-06

second Tudor domain found in Tudor domain-containing protein 12 (TDRD12) and similar proteins; TDRD12, also called ES cell-associated transcript 8 protein (ECAT8), is a putative ATP-dependent DEAD-like RNA helicase that is essential for germ cell development and maintenance. It acts as a unique piRNA biogenesis factor essential for secondary PIWI interacting RNA (piRNA) biogenesis. TDRD12 contains two Tudor domains, one at the N-terminus and the other at the C-terminal end. The model corresponds to the second/C-terminal one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410506  Cd Length: 134  Bit Score: 48.02  E-value: 2.38e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  926 LEVLMEEMILYYSVSEERHIA--VERDQVYAAKVENK-WYRVLL------KGILTNGLVSVYELDYGKHELVNIRKVQPL 996
Cdd:cd20435    27 YLKLSMKLNMYYSDPSNRILHgkVKVGDLCAVEDENNlYHRVKVleitekDDKTKPREVLVKFIDEGRVETVVVSQLLEL 106
                          90       100
                  ....*....|....*....|
gi 672052572  997 VDVFRKLPFQAVTAQLAGVK 1016
Cdd:cd20435   107 PEELKSLPPQAVEVFLCNVK 126
Tudor_TDRD1_rpt4 cd20411
fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; ...
514-569 3.09e-06

fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; TDRD1, also called cancer/testis antigen 41.1 (CT41.1), plays a central role during spermatogenesis by participating in the repression transposable elements and preventing their mobilization, which is essential for germline integrity. It acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins, and governs the methylation and subsequent repression of transposons. TDRD1 contains four Tudor domains. This model corresponds to the fourth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410482  Cd Length: 116  Bit Score: 47.06  E-value: 3.09e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 672052572  514 EDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAG 569
Cdd:cd20411    61 DKNWYRAVVLETSDSEVKVLYADYGNTETLPLSRILPITKSHLELPFQIIRCSLAG 116
Tudor_dTUD-like cd20379
Tudor domain found in Drosophila melanogaster maternal protein Tudor (dTUD) and similar ...
504-551 3.11e-06

Tudor domain found in Drosophila melanogaster maternal protein Tudor (dTUD) and similar proteins; dTUD is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation. It contains 11 Tudor domains. The family also includes mitochondrial A-kinase anchor protein 1 (AKAP1) and Tudor domain-containing proteins (TDRDs). AKAP1, also called A-kinase anchor protein 149 kDa (AKAP 149), or dual specificity A-kinase-anchoring protein 1 (D-AKAP-1), or protein kinase A-anchoring protein 1 (PRKA1), or Spermatid A-kinase anchor protein 84 (S-AKAP84), is found in mitochondria and in the endoplasmic reticulum-nuclear envelope where it anchors protein kinases, phosphatases, and a phosphodiesterase. It regulates multiple cellular processes governing mitochondrial homeostasis and cell viability. AKAP1 binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane. TDRDs have diverse biological functions and may contain one or more copies of the Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410450  Cd Length: 50  Bit Score: 45.20  E-value: 3.11e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 672052572  504 VGQLLAVNAEED-AWLRAQIISTDEN-KIKVCYVDYGFCENIEKSKAYRL 551
Cdd:cd20379     1 VGDLCAAKYEEDgKWYRARVLEVLSNdKVEVFFVDYGNTETVPLSDLRPL 50
LOTUS cd08824
LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and ...
223-288 3.41e-06

LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7. The LOTUS containing proteins are germline-specific and are found in the nuage/polar granules of germ cells. Tudor-containing protein 5 and 7 belong to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD5 and TDRD7 are components of the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs), which are cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis. Oskar protein is a critical component of the pole plasm in the Drosophila oocyte, which is required for germ cell formation. Limkain b1 is a novel human autoantigen, localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif. The exact molecular function of LOTUS domain remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193585 [Multi-domain]  Cd Length: 70  Bit Score: 45.69  E-value: 3.41e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 672052572  223 MDEVQNRIKEILDKHNNGIWISKLPHFYKEFYKEDLNQGVL--QQFEHWPH-ICTVEKPCGGGQDLLLY 288
Cdd:cd08824     1 LKQLAKQLRSLLQSYPGGLPLSKLPQLYKKKFGKPLDLSEYgfSKLSDLLEaLPGVVIVLSQGGERIVS 69
Tudor_TDRD15_rpt4 cd20439
fourth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
897-1015 3.46e-06

fourth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the fourth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410510  Cd Length: 125  Bit Score: 47.49  E-value: 3.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  897 KSGEHMDVYVPVACHPGHFVIQPWQEIHKLEVLMEEMILYYSVSEERHIAVERDQVYAAKVENKWYRVLLKGILTNGLVS 976
Cdd:cd20439     7 KPGSVVDVKCSYVNSPGDFWCQLQTKSSELKSLMKQIQSYYLIHNDPYKHGQIACVAKYSKDGKWYRAAVLKQVSAKEVD 86
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 672052572  977 VYELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAGV 1015
Cdd:cd20439    87 VIFVDYGNQERVLISDLRAIKPQFLLLEGQAFRCSLNNF 125
Tudor_TDRD6_rpt3 cd20422
third Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
903-1029 3.65e-06

third Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410493  Cd Length: 135  Bit Score: 47.51  E-value: 3.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  903 DVYVPVACHPGHFVIQPWQEIHKLEVLMEEMILYYSVSEERHIAV---ERDQVYAAKV-ENKWYRVLLKGILTNGlVSVY 978
Cdd:cd20422     3 DAQVEFVKDPSEFWIRLGEHAVPFSKLMRSMTAFYSQASKLDGVVlkpQPGQLCCAKWkEDRYYRAIVTAVKGKM-VEVF 81
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 672052572  979 ELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAGVK--CSQWSEEASMVFR 1029
Cdd:cd20422    82 LVDRGNTEMVDWYDVKKLLPQFRELPALALKCCLADICplGERWSPEAISAFK 134
Tudor_TDRD15_rpt6 cd20441
sixth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
452-570 4.13e-06

sixth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the sixth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410512  Cd Length: 108  Bit Score: 46.66  E-value: 4.13e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  452 SPSVLVVELSNTNDVVIRYVGkdysaaqELmeDEMKEYYSRNPRVTPIqtvhVGQLLAVNAEEDAWL-RAQIIST-DENK 529
Cdd:cd20441     1 SPSRFFIQLSEDEKVILQLAE-------EL--NETSEKSRENAAVKLK----VGDLVAAEYDEDLALyRAVITAVlPGKS 67
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 672052572  530 IKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAGL 570
Cdd:cd20441    68 FKVEFIDYGNTAVVDKSNIYTLQEKFLSLPRLSIPCSLSGV 108
Tudor_TDRD6_rpt4 cd20423
fourth Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
508-570 6.08e-06

fourth Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the fourth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410494  Cd Length: 80  Bit Score: 45.16  E-value: 6.08e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 672052572  508 LAVNAEEDAWLRAQIISTDENK--IKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAGL 570
Cdd:cd20423    10 LAKYSEDGKWCRALIDNVYEPVemVEVTYVDYGNKELVSLKNLRSISEEFLKLKAQAFRCSLYNL 74
LOTUS_3_TDRD5 cd09976
The third LOTUS domain on Tudor-containing protein 5 (TDRD5); The third LOTUS domain on ...
11-68 7.00e-06

The third LOTUS domain on Tudor-containing protein 5 (TDRD5); The third LOTUS domain on Tudor-containing protein 5 (TDRD5): TDRD5 contains three N-terminal LOTUS domains and a C-terminal Tudor domain. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice TDRD5 is a component of the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs), which are cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis. The exact molecular function of LOTUS domain on TDRD5 remains to be identified. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193590  Cd Length: 74  Bit Score: 44.72  E-value: 7.00e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 672052572   11 LRAVLQSHKNGIVLPRLQGEYRSLTGDWIPFKQLGYPTLEAYLRSVPAVVRIEASRSG 68
Cdd:cd09976     8 IRKVVENHPNGLFIALLPTEYKVLFKEELPVKQLGFLSVTELVGSLSDILAIERREKE 65
Tudor_AKAP1 cd20407
Tudor domain found in mitochondrial A-kinase anchor protein 1 (AKAP1) and similar proteins; ...
497-571 7.67e-06

Tudor domain found in mitochondrial A-kinase anchor protein 1 (AKAP1) and similar proteins; AKAP1, also called A-kinase anchor protein 149 kDa (AKAP 149), dual specificity A-kinase-anchoring protein 1 (D-AKAP-1), protein kinase A-anchoring protein 1 (PRKA1), or Spermatid A-kinase anchor protein 84 (S-AKAP84), is found in mitochondria and in the endoplasmic reticulum-nuclear envelope, where it anchors protein kinases, phosphatases, and a phosphodiesterase. It regulates multiple cellular processes governing mitochondrial homeostasis and cell viability. AKAP1 binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane. It contains a C-terminal Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410478  Cd Length: 76  Bit Score: 44.89  E-value: 7.67e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572  497 TPIQtvhVGQLLAVNAEeDAWLRAQIIST--DENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAGLE 571
Cdd:cd20407     3 EPIE---VGVICAAPVM-NAWYRAQVVGVfeETDEVEIKYLDYGGYERVPVDDLRQIRSDFMTLPFQATECYLANIE 75
LOTUS_3_TDRD5 cd09976
The third LOTUS domain on Tudor-containing protein 5 (TDRD5); The third LOTUS domain on ...
224-291 9.40e-06

The third LOTUS domain on Tudor-containing protein 5 (TDRD5); The third LOTUS domain on Tudor-containing protein 5 (TDRD5): TDRD5 contains three N-terminal LOTUS domains and a C-terminal Tudor domain. It belongs to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice TDRD5 is a component of the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs), which are cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis. The exact molecular function of LOTUS domain on TDRD5 remains to be identified. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193590  Cd Length: 74  Bit Score: 44.72  E-value: 9.40e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 672052572  224 DEVQNRIKEILDKHNNGIWISKLPHFYKEFYKEDL---NQGVLQQFE---HWPHICTVEKPcGGGQDLLLYPAK 291
Cdd:cd09976     2 RELREEIRKVVENHPNGLFIALLPTEYKVLFKEELpvkQLGFLSVTElvgSLSDILAIERR-EKESDWLVFDAK 74
Tudor_TDRD6_rpt2 cd20421
second Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
904-1004 2.44e-05

second Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410492  Cd Length: 130  Bit Score: 45.11  E-value: 2.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  904 VYVPVACHPGHFVIQPWQEIHKLEVLMEEMILYYsvsEERHiaVERDQVYAAKV---------ENKWYR-VLLKGILTNG 973
Cdd:cd20421    15 VVVTEVTDPHRIFCQLRSLSQELKRLSESMHQYY---EGRV--GSGYETRPEKLgspcaargsDGRWYRaVLQQVFSANR 89
                          90       100       110
                  ....*....|....*....|....*....|.
gi 672052572  974 LVSVYELDYGKHELVNIRKVQPLVDVFRKLP 1004
Cdd:cd20421    90 VVEVLHVDYGRKEVVSVSNLRYLAPEYFRMP 120
TUDOR smart00333
Tudor domain; Domain of unknown function present in several RNA-binding proteins. 10 copies in ...
695-745 2.75e-05

Tudor domain; Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).


Pssm-ID: 197660  Cd Length: 57  Bit Score: 42.65  E-value: 2.75e-05
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|.
gi 672052572    695 GKICLFHCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELREIPPRF 745
Cdd:smart00333    7 DKVAARWEDGEWYRARIVKVDGEQLYEVFFIDYGNEEVVPPSDLRQLPEEL 57
Tudor_TDRD6_rpt4 cd20423
fourth Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
957-1021 3.44e-05

fourth Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the fourth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410494  Cd Length: 80  Bit Score: 43.24  E-value: 3.44e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672052572  957 VENKWYRVLLKGILTN-GLVSVYELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAGVKcsQWS 1021
Cdd:cd20423    15 EDGKWCRALIDNVYEPvEMVEVTYVDYGNKELVSLKNLRSISEEFLKLKAQAFRCSLYNLI--QPS 78
Tudor_TDRD6_rpt7 cd20426
seventh Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
513-572 5.07e-05

seventh Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the seventh one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410497  Cd Length: 140  Bit Score: 44.41  E-value: 5.07e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  513 EEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAGLEI 572
Cdd:cd20426    59 EDNHWYRALVTKINDNLVSVRFVDYGNEEDVVREQVRALPSELLKIPVQAFPCCLSGFNL 118
Tudor_TDRD15_rpt2 cd20437
second Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
904-1013 6.60e-05

second Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410508  Cd Length: 120  Bit Score: 43.56  E-value: 6.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  904 VYVPVACHPGHFVIQ--PWQEihKLEVLMEEMILYY-SVSEERHIAVER-DQVYAAKVEN-KWYRVLLKGILTNGLVSVY 978
Cdd:cd20437     7 VKITAAVSPSKFYCQllSWEP--ELSKLTTQMTLHYeSVSKELNPSCENfGLLCAAKGKDgQWHRGFLQQLLPPSQVKVW 84
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 672052572  979 ELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLA 1013
Cdd:cd20437    85 FIDYGNSEAVSSHSVLKLPPDFFSLPLMSFPCSLS 119
Tudor_TDRD1_rpt3 cd20410
third Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; ...
692-746 6.62e-05

third Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; TDRD1, also called cancer/testis antigen 41.1 (CT41.1), plays a central role during spermatogenesis by participating in the repression transposable elements and preventing their mobilization, which is essential for germline integrity. It acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins, and governs the methylation and subsequent repression of transposons. TDRD1 contains four Tudor domains. This model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410481 [Multi-domain]  Cd Length: 59  Bit Score: 41.56  E-value: 6.62e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572  692 PFCGKIC--LFHCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELREIPPRFL 746
Cdd:cd20410     3 PIVGEPCcaFFSGDGNWYRAMVKEILPGGAVKVHFVDYGNVEEVTLDKLRKITSTFL 59
Tudor_TDRD4_rpt2 cd20415
second Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; ...
504-571 8.93e-05

second Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; TDRD4, also called RING finger protein 17 (RNF17), is a component of the mammalian germ cell nuage and is essential for spermiogenesis. It seems to be involved in the regulation of transcriptional activity of MYC. In vitro, TDRD4 inhibits the DNA-binding activity of Mad-MAX heterodimers. It can recruit Mad transcriptional repressors (MXD1, MXD3, MXD4 and MXI1) to the cytoplasm. TDRD4 also acts as a potential cancer/testis antigen in liver cancer. TDRD4 contains a RING finger and five Tudor domains. This model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410486  Cd Length: 96  Bit Score: 42.42  E-value: 8.93e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 672052572  504 VGQLLAVNAEEDAWLRAQIIS-TDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAGLE 571
Cdd:cd20415    27 QGQACVALFEDGAWYRARIIGlPGHREVEVKYVDFGNTATVTIKHVRKIKDDFLSLPEKARECRLAFIE 95
Tudor_TDRD15_rpt6 cd20441
sixth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
708-764 9.17e-05

sixth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the sixth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410512  Cd Length: 108  Bit Score: 42.81  E-value: 9.17e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572  708 RVEITNVHSSRALDVQFLDSGNSTSVKVSELREIPprflQEMLAIPPQAIKCCLADL 764
Cdd:cd20441    56 RAVITAVLPGKSFKVEFIDYGNTAVVDKSNIYTLQ----EKFLSLPRLSIPCSLSGV 108
Tudor_AKAP1 cd20407
Tudor domain found in mitochondrial A-kinase anchor protein 1 (AKAP1) and similar proteins; ...
695-764 1.11e-04

Tudor domain found in mitochondrial A-kinase anchor protein 1 (AKAP1) and similar proteins; AKAP1, also called A-kinase anchor protein 149 kDa (AKAP 149), dual specificity A-kinase-anchoring protein 1 (D-AKAP-1), protein kinase A-anchoring protein 1 (PRKA1), or Spermatid A-kinase anchor protein 84 (S-AKAP84), is found in mitochondria and in the endoplasmic reticulum-nuclear envelope, where it anchors protein kinases, phosphatases, and a phosphodiesterase. It regulates multiple cellular processes governing mitochondrial homeostasis and cell viability. AKAP1 binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane. It contains a C-terminal Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410478  Cd Length: 76  Bit Score: 41.42  E-value: 1.11e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 672052572  695 GKICLFHCKGKWLRVEITNVHS-SRALDVQFLDSGNSTSVKVSELREIppRflQEMLAIPPQAIKCCLADL 764
Cdd:cd20407     8 GVICAAPVMNAWYRAQVVGVFEeTDEVEIKYLDYGGYERVPVDDLRQI--R--SDFMTLPFQATECYLANI 74
Tudor_AtTudor1-like cd20443
Tudor domain found in Arabidopsis thaliana ribonuclease Tudor 1 (AtTudor1), ribonuclease Tudor ...
697-762 1.67e-04

Tudor domain found in Arabidopsis thaliana ribonuclease Tudor 1 (AtTudor1), ribonuclease Tudor 2 (AtTudor2), and similar proteins; The family includes AtTudor1 (also called Tudor-SN protein 1) and AtTudor2 (also called Tudor-SN protein 2 or 100 kDa coactivator-like protein). They are cytoprotective ribonucleases (RNases) required for resistance to abiotic stresses, acting as positive regulators of mRNA decapping during stress. Members of this family contain one Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410514 [Multi-domain]  Cd Length: 117  Bit Score: 42.45  E-value: 1.67e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 672052572  697 ICLFHCKGKWLRVEITNVHSS------RALDVQFLDSGNSTSVKVSELREIPPrflqEMLAIPPQAIKCCLA 762
Cdd:cd20443    45 LAQFSADNSWNRAMVVNAPRQgtqspkDEYEVFYIDYGNQETVPLSALRPLDP----SVSSAPGLAQLCSLA 112
Tudor_TDRD11 cd20433
Tudor domain found in Tudor domain-containing protein 11 (TDRD11) and similar proteins; TDRD11, ...
476-555 1.76e-04

Tudor domain found in Tudor domain-containing protein 11 (TDRD11) and similar proteins; TDRD11, also called Staphylococcal nuclease domain-containing protein 1 (SND1), 100 kDa coactivator, EBNA2 coactivator p100, or p100 co-activator, is a multifunctional protein that is reportedly associated with different types of RNA molecules, including mRNA, miRNA, pre-miRNA, and dsRNA. It has been implicated in a number of biological processes in eukaryotic cells, including the cell cycle, DNA damage repair, proliferation, and apoptosis. TDRD11 is overexpressed in multiple cancers and functions as an oncogene. It contains multiple Staphylococcal nuclease (SN) domains and a C-terminal Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410504 [Multi-domain]  Cd Length: 84  Bit Score: 41.13  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  476 SAAQELMEDEMKEYYSRNPRVTPIQTVHVGQLLAVNAEEDA-WLRAQIISTDEN-KIKVCYVDYGFCENIEKSKAYRLNP 553
Cdd:cd20433     2 GPQLEKLMEKLRFEIASNPPLPGSYTPRKGDLCAAKFVEDGeWYRAKVEKVEGDkKVHVLYIDYGNREVLPSTRLAALPP 81

                  ..
gi 672052572  554 RF 555
Cdd:cd20433    82 AF 83
LOTUS cd08824
LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and ...
328-392 2.18e-04

LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7; LOTUS is an uncharacterized small globular domain found in Limkain b1, Oskar and Tudor-containing proteins 5 and 7. The LOTUS containing proteins are germline-specific and are found in the nuage/polar granules of germ cells. Tudor-containing protein 5 and 7 belong to the evolutionary conserved Tudor domain-containing protein (TDRD) family involved in germ cell development. In mice, TDRD5 and TDRD7 are components of the intermitochondrial cements (IMCs) and the chromatoid bodies (CBs), which are cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis. Oskar protein is a critical component of the pole plasm in the Drosophila oocyte, which is required for germ cell formation. Limkain b1 is a novel human autoantigen, localized to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures. Limkain b1 contains multiple copies of LOTUS domains and a conserved RNA recognition motif. The exact molecular function of LOTUS domain remains to be characterized. Its occurrence in proteins associated with RNA metabolism suggests that it might be involved in RNA binding function. The presence of several basic residues and RNA fold recognition motifs support this hypothesis. The RNA binding function might be the first step of regulating mRNA translation or localization.


Pssm-ID: 193585 [Multi-domain]  Cd Length: 70  Bit Score: 40.68  E-value: 2.18e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 672052572  328 DVKEKVAELLGKYSSGLWASALPKAFEDMYKVKFPEDAL--KNLASL-SDVCTINYISGNTQKAILYA 392
Cdd:cd08824     3 QLAKQLRSLLQSYPGGLPLSKLPQLYKKKFGKPLDLSEYgfSKLSDLlEALPGVVIVLSQGGERIVSL 70
TUDOR smart00333
Tudor domain; Domain of unknown function present in several RNA-binding proteins. 10 copies in ...
500-555 2.19e-04

Tudor domain; Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).


Pssm-ID: 197660  Cd Length: 57  Bit Score: 39.95  E-value: 2.19e-04
                            10        20        30        40        50
                    ....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572    500 QTVHVGQLLAVNAEEDAWLRAQIIS-TDENKIKVCYVDYGFCENIEKSKAYRLNPRF 555
Cdd:smart00333    1 PTFKVGDKVAARWEDGEWYRARIVKvDGEQLYEVFFIDYGNEEVVPPSDLRQLPEEL 57
Tudor_TDRD15_rpt4 cd20439
fourth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
481-570 2.28e-04

fourth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the fourth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410510  Cd Length: 125  Bit Score: 42.09  E-value: 2.28e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  481 LMEDEMKEYYSRNPRVTPIQTVHVgqllAVNAEEDAWLRAQIIS-TDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLS 559
Cdd:cd20439    39 LMKQIQSYYLIHNDPYKHGQIACV----AKYSKDGKWYRAAVLKqVSAKEVDVIFVDYGNQERVLISDLRAIKPQFLLLE 114
                          90
                  ....*....|.
gi 672052572  560 FQATKCKLAGL 570
Cdd:cd20439   115 GQAFRCSLNNF 125
Tudor_TDRD12_rpt2 cd20435
second Tudor domain found in Tudor domain-containing protein 12 (TDRD12) and similar proteins; ...
695-757 2.75e-04

second Tudor domain found in Tudor domain-containing protein 12 (TDRD12) and similar proteins; TDRD12, also called ES cell-associated transcript 8 protein (ECAT8), is a putative ATP-dependent DEAD-like RNA helicase that is essential for germ cell development and maintenance. It acts as a unique piRNA biogenesis factor essential for secondary PIWI interacting RNA (piRNA) biogenesis. TDRD12 contains two Tudor domains, one at the N-terminus and the other at the C-terminal end. The model corresponds to the second/C-terminal one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410506  Cd Length: 134  Bit Score: 41.85  E-value: 2.75e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  695 GKIC-LFHCKGKWLRVEITNV------HSSRALDVQFLDSGNSTSVKVSELREIPPRFLQemlaIPPQAI 757
Cdd:cd20435    53 GDLCaVEDENNLYHRVKVLEItekddkTKPREVLVKFIDEGRVETVVVSQLLELPEELKS----LPPQAV 118
Tudor_TDRD4_rpt5 cd20418
fifth Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; ...
704-762 2.80e-04

fifth Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; TDRD4, also called RING finger protein 17 (RNF17), is a component of the mammalian germ cell nuage and is essential for spermiogenesis. It seems to be involved in the regulation of transcriptional activity of MYC. In vitro, TDRD4 inhibits the DNA-binding activity of Mad-MAX heterodimers. It can recruit Mad transcriptional repressors (MXD1, MXD3, MXD4 and MXI1) to the cytoplasm. TDRD4 also acts as a potential cancer/testis antigen in liver cancer. TDRD4 contains a RING finger and five Tudor domains. This model corresponds to the fifth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410489  Cd Length: 105  Bit Score: 41.24  E-value: 2.80e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 672052572  704 GKWLRVE---ITNVHSSRALdVQFLDSGNSTSVKVSELREIPPRFLQemlaIPPQAIKCCLA 762
Cdd:cd20418    17 GKWYRAKllsILEFNPVKIL-VRHVDYGSTAALPTSRLRQIPAELMQ----YPCQAIKVKLA 73
Tudor_TDRD15_rpt5 cd20440
fifth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; ...
897-1008 4.45e-04

fifth Tudor domain found in Tudor domain-containing protein 15 (TDRD15) and similar proteins; TDRD15 is an uncharacterized Tudor domain-containing protein that contains seven Tudor domains. This model corresponds to the fifth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410511  Cd Length: 127  Bit Score: 41.29  E-value: 4.45e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  897 KSGEHMDVYVPVACHPGHFVIQPWQEIHKLEVLMEEMILYYSVSEERHIAVERDQVYAAKV--ENKWYRVLLKGILTNGL 974
Cdd:cd20440     7 KVGSEEEVYITHVYSPAKFYCQLDRNTEILEALMEKIAEISKLFNSQILDNCKTRLCLAKYfeDGQWYRALAHPVESSSH 86
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 672052572  975 VSVYELDYGKHELVNIRKVQPLVDVFRKL---PFQAV 1008
Cdd:cd20440    87 LSVYFVDYGNKQIVEKNEVLPIPDTAVDLlltPMQAI 123
Tudor_TDRD1_rpt3 cd20410
third Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; ...
958-996 8.05e-04

third Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; TDRD1, also called cancer/testis antigen 41.1 (CT41.1), plays a central role during spermatogenesis by participating in the repression transposable elements and preventing their mobilization, which is essential for germline integrity. It acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins, and governs the methylation and subsequent repression of transposons. TDRD1 contains four Tudor domains. This model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410481 [Multi-domain]  Cd Length: 59  Bit Score: 38.48  E-value: 8.05e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 672052572  958 ENKWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPL 996
Cdd:cd20410    16 DGNWYRAMVKEILPGGAVKVHFVDYGNVEEVTLDKLRKI 54
Tudor_TDRD4_rpt3 cd20416
third Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; ...
929-1003 9.04e-04

third Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; TDRD4, also called RING finger protein 17 (RNF17), is a component of the mammalian germ cell nuage and is essential for spermiogenesis. It seems to be involved in the regulation of transcriptional activity of MYC. In vitro, TDRD4 inhibits the DNA-binding activity of Mad-MAX heterodimers. It can recruit Mad transcriptional repressors (MXD1, MXD3, MXD4 and MXI1) to the cytoplasm. TDRD4 also acts as a potential cancer/testis antigen in liver cancer. TDRD4 contains a RING finger and five Tudor domains. This model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410487  Cd Length: 82  Bit Score: 39.01  E-value: 9.04e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572  929 LMEEMILYYSVSEERHIAVERDQVYAAKV--ENKWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLVDVFRKL 1003
Cdd:cd20416     1 LQEKMIAEYENSKPEPVKWENDMHCAVQIqdKKQWRRGQIIRVVSDTLVEVFLYDFGNKEVVNIDCLRKLEENLKTI 77
Tudor_AtTudor1-like cd20443
Tudor domain found in Arabidopsis thaliana ribonuclease Tudor 1 (AtTudor1), ribonuclease Tudor ...
505-572 1.28e-03

Tudor domain found in Arabidopsis thaliana ribonuclease Tudor 1 (AtTudor1), ribonuclease Tudor 2 (AtTudor2), and similar proteins; The family includes AtTudor1 (also called Tudor-SN protein 1) and AtTudor2 (also called Tudor-SN protein 2 or 100 kDa coactivator-like protein). They are cytoprotective ribonucleases (RNases) required for resistance to abiotic stresses, acting as positive regulators of mRNA decapping during stress. Members of this family contain one Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410514 [Multi-domain]  Cd Length: 117  Bit Score: 39.76  E-value: 1.28e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672052572  505 GQL-LAVNAEEDAWLRAQII-------STDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAGLEI 572
Cdd:cd20443    41 GELvLAQFSADNSWNRAMVVnaprqgtQSPKDEYEVFYIDYGNQETVPLSALRPLDPSVSSAPGLAQLCSLAHIKV 116
Tudor_TDRD4_rpt5 cd20418
fifth Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; ...
517-579 1.42e-03

fifth Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; TDRD4, also called RING finger protein 17 (RNF17), is a component of the mammalian germ cell nuage and is essential for spermiogenesis. It seems to be involved in the regulation of transcriptional activity of MYC. In vitro, TDRD4 inhibits the DNA-binding activity of Mad-MAX heterodimers. It can recruit Mad transcriptional repressors (MXD1, MXD3, MXD4 and MXI1) to the cytoplasm. TDRD4 also acts as a potential cancer/testis antigen in liver cancer. TDRD4 contains a RING finger and five Tudor domains. This model corresponds to the fifth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410489  Cd Length: 105  Bit Score: 39.31  E-value: 1.42e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 672052572  517 WLRAQIISTDE---NKIKVCYVDYGFCENIEKSKAYRLNPRFCSLSFQATKCKLAGLEILNDDPNL 579
Cdd:cd20418    19 WYRAKLLSILEfnpVKILVRHVDYGSTAALPTSRLRQIPAELMQYPCQAIKVKLAGFKPPLNDSET 84
Tudor_TDRD6_rpt3 cd20422
third Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
480-568 1.47e-03

third Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the third one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410493  Cd Length: 135  Bit Score: 39.80  E-value: 1.47e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  480 ELMEdEMKEYYSRNPRVTPI-QTVHVGQLLAVNAEEDAWLRAQIISTDENKIKVCYVDYGFCENIEKSKAYRLNPRFCSL 558
Cdd:cd20422    28 KLMR-SMTAFYSQASKLDGVvLKPQPGQLCCAKWKEDRYYRAIVTAVKGKMVEVFLVDRGNTEMVDWYDVKKLLPQFREL 106
                          90
                  ....*....|
gi 672052572  559 SFQATKCKLA 568
Cdd:cd20422   107 PALALKCCLA 116
Tudor_TDRD6_rpt5 cd20424
fifth Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; ...
644-761 1.74e-03

fifth Tudor domain found in Tudor domain-containing protein 6 (TDRD6) and similar proteins; TDRD6, also called antigen NY-CO-45 or cancer/testis antigen 41.2 (CT41.2), is a testis-specific expressed protein that was localized to the chromatoid bodies in germ cells, and is involved in spermiogenesis, chromatoid body formation, and for proper precursor and mature miRNA expression. Mutations in TDRD6 may be associated with human male infertility and early embryonic lethality. TDRD6 contains seven Tudor domains. This model corresponds to the fifth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410495  Cd Length: 126  Bit Score: 39.41  E-value: 1.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  644 VKVTNICSDGTLYCQVPcKGLNKLNDLLHKTEDYfhCKHMTSEYFISLPfcGKICLF-HCKGKWLRVEITNVHSSRalDV 722
Cdd:cd20424    16 VYITYVNDPWTFYCQLA-RNAGVLDQLASAISRL--SSEIRKLELSVNP--GTLCLAkYSDQHWYRGIIITNKNST--EV 88
                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 672052572  723 QFLDSGNSTSVKVSELREIPPRfLQEMLAIPPQAIKCCL 761
Cdd:cd20424    89 FFVDYGNTEKVEKEDMLPIPSD-AYELLLLPMQAIKCSL 126
Tudor_TDRD1_rpt4 cd20411
fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; ...
958-1014 2.13e-03

fourth Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; TDRD1, also called cancer/testis antigen 41.1 (CT41.1), plays a central role during spermatogenesis by participating in the repression transposable elements and preventing their mobilization, which is essential for germline integrity. It acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins, and governs the methylation and subsequent repression of transposons. TDRD1 contains four Tudor domains. This model corresponds to the fourth one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410482  Cd Length: 116  Bit Score: 38.97  E-value: 2.13e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572  958 ENKWYRVLLKGIlTNGLVSVYELDYGKHELVNIRKVQPLVDVFRKLPFQAVTAQLAG 1014
Cdd:cd20411    61 DKNWYRAVVLET-SDSEVKVLYADYGNTETLPLSRILPITKSHLELPFQIIRCSLAG 116
Tudor_TDRD4_rpt2 cd20415
second Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; ...
926-1017 2.46e-03

second Tudor domain found in Tudor domain-containing protein 4 (TDRD4) and similar proteins; TDRD4, also called RING finger protein 17 (RNF17), is a component of the mammalian germ cell nuage and is essential for spermiogenesis. It seems to be involved in the regulation of transcriptional activity of MYC. In vitro, TDRD4 inhibits the DNA-binding activity of Mad-MAX heterodimers. It can recruit Mad transcriptional repressors (MXD1, MXD3, MXD4 and MXI1) to the cytoplasm. TDRD4 also acts as a potential cancer/testis antigen in liver cancer. TDRD4 contains a RING finger and five Tudor domains. This model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410486  Cd Length: 96  Bit Score: 38.18  E-value: 2.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  926 LEVLMEEMILYYSVSEERHIAV---ERDQVYAAKVEN-KWYRVLLKGILTNGLVSVYELDYGKHELVNIRKVQPLVDVFR 1001
Cdd:cd20415     1 FLILTKKIQEFYKEGDDGGLEIlcpVQGQACVALFEDgAWYRARIIGLPGHREVEVKYVDFGNTATVTIKHVRKIKDDFL 80
                          90
                  ....*....|....*.
gi 672052572 1002 KLPFQAVTAQLAGVKC 1017
Cdd:cd20415    81 SLPEKARECRLAFIEP 96
Tudor_TDRD8 cd20430
Tudor domain found in Tudor domain-containing protein 8 (TDRD8) and similar proteins; TDRD8, ...
950-989 3.18e-03

Tudor domain found in Tudor domain-containing protein 8 (TDRD8) and similar proteins; TDRD8, also called serine/threonine-protein kinase (EC 2.7.11.1) 31 (STK31), serine/threonine-protein kinase NYD-SPK, or Sugen kinase 396 (SgK396), is a germ cell-specific factor expressed in embryonic gonocytes of both sexes, and in postnatal spermatocytes and round spermatids in males. It acts as a cell-cycle regulated protein that contributes to the tumorigenicity of epithelial cancer cells. TDRD8 contains a Tudor domain and a serine/threonine kinase domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410501 [Multi-domain]  Cd Length: 75  Bit Score: 37.27  E-value: 3.18e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 672052572  950 DQVYAAK--VENKWYRVLLKGILTNGLVSVYELDYGKHELVN 989
Cdd:cd20430    22 NKIYGGKfsEDNCWYRCKVKSILSDEKCTVQYIDYGNTETVS 63
Tudor_TDRD8 cd20430
Tudor domain found in Tudor domain-containing protein 8 (TDRD8) and similar proteins; TDRD8, ...
509-546 4.48e-03

Tudor domain found in Tudor domain-containing protein 8 (TDRD8) and similar proteins; TDRD8, also called serine/threonine-protein kinase (EC 2.7.11.1) 31 (STK31), serine/threonine-protein kinase NYD-SPK, or Sugen kinase 396 (SgK396), is a germ cell-specific factor expressed in embryonic gonocytes of both sexes, and in postnatal spermatocytes and round spermatids in males. It acts as a cell-cycle regulated protein that contributes to the tumorigenicity of epithelial cancer cells. TDRD8 contains a Tudor domain and a serine/threonine kinase domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410501 [Multi-domain]  Cd Length: 75  Bit Score: 36.89  E-value: 4.48e-03
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 672052572  509 AVNAEEDAWLRAQIISTD-ENKIKVCYVDYGFCENIEKS 546
Cdd:cd20430    27 GKFSEDNCWYRCKVKSILsDEKCTVQYIDYGNTETVSRS 65
Tudor_TDRD1_rpt2 cd20409
second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; ...
479-553 4.70e-03

second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; TDRD1, also called cancer/testis antigen 41.1 (CT41.1), plays a central role during spermatogenesis by participating in the repression transposable elements and preventing their mobilization, which is essential for germline integrity. It acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins, and governs the methylation and subsequent repression of transposons. TDRD1 contains four Tudor domains. This model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410480  Cd Length: 82  Bit Score: 37.05  E-value: 4.70e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 672052572  479 QELMEDeMKEYYSRNPrVTPIQTVHVGQL-LAVNAEEDAWLRAQIIS-TDENKIKVCYVDYGfceNIEKSKAYRLNP 553
Cdd:cd20409     5 AELQES-LSAYCKVAP-ASSDFSPAVGEVcCAQFTEDNQWYRASVLAySSEDSVLVGYIDFG---NSEEVALSRLRP 76
Tudor_TDRD5 cd20419
Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins; TDRD5 is ...
646-761 5.17e-03

Tudor domain found in Tudor domain-containing protein 5 (TDRD5) and similar proteins; TDRD5 is an RNA-binding protein directly associated with piRNA precursors. It is required for retrotransposon silencing, chromatoid body assembly, and spermiogenesis. TDRD5 participates in the repression of transposable elements and prevents their mobilization, which is essential for germline integrity. TDRD5 contains three LOTUS domains and one Tudor domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410490  Cd Length: 118  Bit Score: 38.20  E-value: 5.17e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  646 VTNICSDGTLYCQvPCKGLN--KLNDLLHKTEDYFHCKHMtSEYFISLPFC---GKICLFHCKGK--WLRVEITNVHSSR 718
Cdd:cd20419     2 VEYIESPSQFYVR-FYSKDTseMLEDMMIEMRRCYSNEHV-SERYVMPEAFiqpGQVCCVRIPEDvwWYRVIIHQVLNKQ 79
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 672052572  719 ALDVQFLDSGNSTSVKVSELREIPPRFLQemlaIPPQAIKCCL 761
Cdd:cd20419    80 EVEVFYPDFGDIGTVQKSRLRFLKCCYSK----LPAQAIPASL 118
Tudor_TDRD8 cd20430
Tudor domain found in Tudor domain-containing protein 8 (TDRD8) and similar proteins; TDRD8, ...
692-745 6.32e-03

Tudor domain found in Tudor domain-containing protein 8 (TDRD8) and similar proteins; TDRD8, also called serine/threonine-protein kinase (EC 2.7.11.1) 31 (STK31), serine/threonine-protein kinase NYD-SPK, or Sugen kinase 396 (SgK396), is a germ cell-specific factor expressed in embryonic gonocytes of both sexes, and in postnatal spermatocytes and round spermatids in males. It acts as a cell-cycle regulated protein that contributes to the tumorigenicity of epithelial cancer cells. TDRD8 contains a Tudor domain and a serine/threonine kinase domain. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410501 [Multi-domain]  Cd Length: 75  Bit Score: 36.50  E-value: 6.32e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 672052572  692 PFCGKI--CLFHCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELREIPPRF 745
Cdd:cd20430    19 PDPNKIygGKFSEDNCWYRCKVKSILSDEKCTVQYIDYGNTETVSRSSIVELPPDL 74
Tudor_TDRD1_rpt2 cd20409
second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; ...
679-746 6.56e-03

second Tudor domain found in Tudor domain-containing protein 1 (TDRD1) and similar proteins; TDRD1, also called cancer/testis antigen 41.1 (CT41.1), plays a central role during spermatogenesis by participating in the repression transposable elements and preventing their mobilization, which is essential for germline integrity. It acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins, and governs the methylation and subsequent repression of transposons. TDRD1 contains four Tudor domains. This model corresponds to the second one. The Tudor domain binds to proteins with dimethylated arginine or lysine residues, and may also bind methylated histone tails to facilitate protein-protein interactions.


Pssm-ID: 410480  Cd Length: 82  Bit Score: 36.66  E-value: 6.56e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 672052572  679 HCKHMTSEYFISlPFCGKIC--LFHCKGKWLRVEITNVHSSRALDVQFLDSGNSTSVKVSELREIPPRFL 746
Cdd:cd20409    14 YCKVAPASSDFS-PAVGEVCcaQFTEDNQWYRASVLAYSSEDSVLVGYIDFGNSEEVALSRLRPIPPSLL 82
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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