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Conserved domains on  [gi|578825003|ref|XP_006719929|]
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N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Homo sapiens]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11420860)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  30708253|10517866
SCOP:  3001345

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
NatA_aux_su pfam12569
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ...
 187-638 0e+00

N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.


:

Pssm-ID: 463630 [Multi-domain]  Cd Length: 514  Bit Score: 695.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  187 YEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEK 266
Cdd:pfam12569   1 YEHSELLLYKNQIIAESGDLEEALEHLEKVEKQIVDKLAVLETKADYLLKLGRKEEAEATYRALLERNPENHAYYEGLEK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  267 ALQIST--LEERLQIYEEISKQHPKAITPRRLPLTL---------------------VP--------------------- 302
Cdd:pfam12569  81 ALGISKedHEALLALYDELAEKYPRSDAPRRLPLDFlegeefkeladkylrrmlrkgVPslfvnlkslytdsekvdiiee 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  303 --------------------ENGEKEPPTTLLWVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIG 362
Cdd:pfam12569 161 lvegyvsslktngkfsgsdnGDGEKEPPSTLLWTYYFLAQHYDYLGSYEKALEYIDKAIDHTPTLIELYMTKARIYKHAG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  363 NLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEEMCSKFTREGTSAMENLNEMQCMWFQTECISAYQRLGRYG 442
Cdd:pfam12569 241 DLQKAAEWMDEARSLDLADRYINSKCAKYMLRANEVEEAEETCSKFTRNGVGALGNLNEMQCMWFLTEDGEAYQRQGKYG 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  443 DALKKCHEVERHFFEITDDQFDFHTYCMRKMTLRAYVDLLRLEDILRRHAFYFKAARSAIEIYLKLYDNPLTNESKQQEI 522
Cdd:pfam12569 321 LALKRFHAVEKHFDEWEEDQFDFHTYCLRKMTLRAYVDMLRWEDRLRSHPFYFKAAKGAIEVYLRLHDKPLLKEGPEEEG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  523 NSENLSAKELKKMLSKQRRAQKKAKLEEERKHAERERQQKNQKKKRDeeEEEASGLKEELIPEKLERVENPLEEAVKFLI 602
Cdd:pfam12569 401 DNGNLSPAERKKARKKQKKAEKKAEKEEAEKAAKKKKKKAEKKAKGE--DGETKKEDPDPLGEKLAQTEDPLEEAMKFLK 478

                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 578825003  603 PLKNLVADNIDTHLLAFEIYFRKGKFLLMLQSVKRA 638
Cdd:pfam12569 479 PLLKLAPDNIETHLLAFEVYIRKKKYLLALQCLKAA 514
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-243 3.83e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 3.83e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  21 YEQKQYKNGLKFCKMILS-NPKFAEhgeTLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEA 99
Cdd:COG0457   19 RRLGRYEEAIEDYEKALElDPDDAE---ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEA 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 100 IKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQ 179
Cdd:COG0457   96 LEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAAL 175

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578825003 180 VPPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEA 243
Cdd:COG0457  176 AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
 
Name Accession Description Interval E-value
NatA_aux_su pfam12569
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ...
 187-638 0e+00

N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.


Pssm-ID: 463630 [Multi-domain]  Cd Length: 514  Bit Score: 695.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  187 YEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEK 266
Cdd:pfam12569   1 YEHSELLLYKNQIIAESGDLEEALEHLEKVEKQIVDKLAVLETKADYLLKLGRKEEAEATYRALLERNPENHAYYEGLEK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  267 ALQIST--LEERLQIYEEISKQHPKAITPRRLPLTL---------------------VP--------------------- 302
Cdd:pfam12569  81 ALGISKedHEALLALYDELAEKYPRSDAPRRLPLDFlegeefkeladkylrrmlrkgVPslfvnlkslytdsekvdiiee 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  303 --------------------ENGEKEPPTTLLWVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIG 362
Cdd:pfam12569 161 lvegyvsslktngkfsgsdnGDGEKEPPSTLLWTYYFLAQHYDYLGSYEKALEYIDKAIDHTPTLIELYMTKARIYKHAG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  363 NLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEEMCSKFTREGTSAMENLNEMQCMWFQTECISAYQRLGRYG 442
Cdd:pfam12569 241 DLQKAAEWMDEARSLDLADRYINSKCAKYMLRANEVEEAEETCSKFTRNGVGALGNLNEMQCMWFLTEDGEAYQRQGKYG 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  443 DALKKCHEVERHFFEITDDQFDFHTYCMRKMTLRAYVDLLRLEDILRRHAFYFKAARSAIEIYLKLYDNPLTNESKQQEI 522
Cdd:pfam12569 321 LALKRFHAVEKHFDEWEEDQFDFHTYCLRKMTLRAYVDMLRWEDRLRSHPFYFKAAKGAIEVYLRLHDKPLLKEGPEEEG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  523 NSENLSAKELKKMLSKQRRAQKKAKLEEERKHAERERQQKNQKKKRDeeEEEASGLKEELIPEKLERVENPLEEAVKFLI 602
Cdd:pfam12569 401 DNGNLSPAERKKARKKQKKAEKKAEKEEAEKAAKKKKKKAEKKAKGE--DGETKKEDPDPLGEKLAQTEDPLEEAMKFLK 478

                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 578825003  603 PLKNLVADNIDTHLLAFEIYFRKGKFLLMLQSVKRA 638
Cdd:pfam12569 479 PLLKLAPDNIETHLLAFEVYIRKKKYLLALQCLKAA 514
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-243 3.83e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 3.83e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  21 YEQKQYKNGLKFCKMILS-NPKFAEhgeTLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEA 99
Cdd:COG0457   19 RRLGRYEEAIEDYEKALElDPDDAE---ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEA 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 100 IKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQ 179
Cdd:COG0457   96 LEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAAL 175

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578825003 180 VPPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEA 243
Cdd:COG0457  176 AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 83-374 1.24e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 1.24e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  83 WHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLK 162
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 163 DYDMALKLLEEFRQTqqvPPNKIDYEYSELILYQnqvmREADlLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKE 242
Cdd:COG2956   91 LLDRAEELLEKLLEL---DPDDAEALRLLAEIYE----QEGD-WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 243 ASEVFKNLIDRNAENWCYYEGLEK-ALQISTLEERLQIYEEISKQHPKAITprrlpltlvpengekeppttllwVQYFLA 321
Cdd:COG2956  163 AIEALEKALKLDPDCARALLLLAElYLEQGDYEEAIAALERALEQDPDYLP-----------------------ALPRLA 219

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 578825003 322 QHFDKLGQYSLALDYINAAIASTPTLIELFYMkAKIYKHIGNLKEAAKWMDEA 374
Cdd:COG2956  220 ELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQ 271
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 39-401 4.33e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 4.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003   39 NPKFAEHGETLAMKGLTLNclgKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILR 118
Cdd:TIGR02917 155 DPRSLYAKLGLAQLALAEN---RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  119 DLSLLQIQMRDLEGYRETRYQLLQLRPTQ-RASWIGYAIAYHlLKDYDMALKLLEEFRqtqqvppnKIDYEYSELILYQN 197
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPNSpLAHYLKALVDFQ-KKNYEDARETLQDAL--------KSAPEYLPALLLAG 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  198 QVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGL-EKALQISTLEER 276
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLgEAYLALGDFEKA 382

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  277 LQIYEEISKQHPK-AITPRRLPLTLV----PENGEKEPPTT------LLWVQYFLAQHFDKLGQYSLALDYINAAIASTP 345
Cdd:TIGR02917 383 AEYLAKATELDPEnAAARTQLGISKLsqgdPSEAIADLETAaqldpeLGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 578825003  346 TLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEA 401
Cdd:TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518
TPR_1 pfam00515
Tetratricopeptide repeat;
87-113 2.39e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 2.39e-03
                          10        20
                  ....*....|....*....|....*..
gi 578825003   87 GLLQRSDKKYDEAIKCYRNALKLDKDN 113
Cdd:pfam00515   8 GNAYFKLGKYDEALEYYEKALELNPNN 34
 
Name Accession Description Interval E-value
NatA_aux_su pfam12569
N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal ...
 187-638 0e+00

N-terminal acetyltransferase A, auxiliary subunit; This entry represents N-terminal acetyltransferase A (NatA) auxiliary subunit (also known as NMDA receptor-regulated protein 1), which is a non-catalytic component of the NatA N-terminal acetyltransferase that catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protecting against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome, and may present the N terminus of nascent polypeptides for acetylation.


Pssm-ID: 463630 [Multi-domain]  Cd Length: 514  Bit Score: 695.56  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  187 YEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEK 266
Cdd:pfam12569   1 YEHSELLLYKNQIIAESGDLEEALEHLEKVEKQIVDKLAVLETKADYLLKLGRKEEAEATYRALLERNPENHAYYEGLEK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  267 ALQIST--LEERLQIYEEISKQHPKAITPRRLPLTL---------------------VP--------------------- 302
Cdd:pfam12569  81 ALGISKedHEALLALYDELAEKYPRSDAPRRLPLDFlegeefkeladkylrrmlrkgVPslfvnlkslytdsekvdiiee 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  303 --------------------ENGEKEPPTTLLWVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIG 362
Cdd:pfam12569 161 lvegyvsslktngkfsgsdnGDGEKEPPSTLLWTYYFLAQHYDYLGSYEKALEYIDKAIDHTPTLIELYMTKARIYKHAG 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  363 NLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEEMCSKFTREGTSAMENLNEMQCMWFQTECISAYQRLGRYG 442
Cdd:pfam12569 241 DLQKAAEWMDEARSLDLADRYINSKCAKYMLRANEVEEAEETCSKFTRNGVGALGNLNEMQCMWFLTEDGEAYQRQGKYG 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  443 DALKKCHEVERHFFEITDDQFDFHTYCMRKMTLRAYVDLLRLEDILRRHAFYFKAARSAIEIYLKLYDNPLTNESKQQEI 522
Cdd:pfam12569 321 LALKRFHAVEKHFDEWEEDQFDFHTYCLRKMTLRAYVDMLRWEDRLRSHPFYFKAAKGAIEVYLRLHDKPLLKEGPEEEG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  523 NSENLSAKELKKMLSKQRRAQKKAKLEEERKHAERERQQKNQKKKRDeeEEEASGLKEELIPEKLERVENPLEEAVKFLI 602
Cdd:pfam12569 401 DNGNLSPAERKKARKKQKKAEKKAEKEEAEKAAKKKKKKAEKKAKGE--DGETKKEDPDPLGEKLAQTEDPLEEAMKFLK 478

                         490       500       510
                  ....*....|....*....|....*....|....*.
gi 578825003  603 PLKNLVADNIDTHLLAFEIYFRKGKFLLMLQSVKRA 638
Cdd:pfam12569 479 PLLKLAPDNIETHLLAFEVYIRKKKYLLALQCLKAA 514
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-243 3.83e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 73.12  E-value: 3.83e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  21 YEQKQYKNGLKFCKMILS-NPKFAEhgeTLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEA 99
Cdd:COG0457   19 RRLGRYEEAIEDYEKALElDPDDAE---ALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEA 95

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 100 IKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQ 179
Cdd:COG0457   96 LEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAAL 175

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578825003 180 VPPNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEA 243
Cdd:COG0457  176 AALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALA 239
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 83-374 1.24e-13

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 72.07  E-value: 1.24e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  83 WHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLK 162
Cdd:COG2956   11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 163 DYDMALKLLEEFRQTqqvPPNKIDYEYSELILYQnqvmREADlLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKE 242
Cdd:COG2956   91 LLDRAEELLEKLLEL---DPDDAEALRLLAEIYE----QEGD-WEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDE 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 243 ASEVFKNLIDRNAENWCYYEGLEK-ALQISTLEERLQIYEEISKQHPKAITprrlpltlvpengekeppttllwVQYFLA 321
Cdd:COG2956  163 AIEALEKALKLDPDCARALLLLAElYLEQGDYEEAIAALERALEQDPDYLP-----------------------ALPRLA 219

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 578825003 322 QHFDKLGQYSLALDYINAAIASTPTLIELFYMkAKIYKHIGNLKEAAKWMDEA 374
Cdd:COG2956  220 ELYEKLGDPEEALELLRKALELDPSDDLLLAL-ADLLERKEGLEAALALLERQ 271
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
44-283 2.16e-13

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 70.81  E-value: 2.16e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  44 EHGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLL 123
Cdd:COG0457    6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 124 QIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQtqqvppnkIDYEYSELILYQNQVMREA 203
Cdd:COG0457   86 LQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALE--------LDPDDADALYNLGIALEKL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 204 DLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEI 283
Cdd:COG0457  158 GRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAA 237
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 12-218 4.96e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 69.64  E-value: 4.96e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  12 NLFKRILKCYEQKQYKNGLKFCKMILS-NPKFAEHGETLamkGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQ 90
Cdd:COG3914   80 LLELAALLLQALGRYEEALALYRRALAlNPDNAEALFNL---GNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  91 RSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKL 170
Cdd:COG3914  157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 578825003 171 LEEFRQTQQVPPNKIDYeyseLILYQNQVmREADLLQESLEHIEMYEK 218
Cdd:COG3914  237 EELLAALARGPSELSPF----ALLYLPDD-DPAELLALARAWAQLVAA 279
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 44-287 7.04e-12

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 66.68  E-value: 7.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  44 EHGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLL 123
Cdd:COG2956   40 ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEI 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 124 QIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRqtqqvppnKIDYEYSELILYQNQVMREA 203
Cdd:COG2956  120 YEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL--------KLDPDCARALLLLAELYLEQ 191

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 204 DLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQIYEEI 283
Cdd:COG2956  192 GDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADLLERKEGLEAALALLERQ 271


                 ....
gi 578825003 284 SKQH 287
Cdd:COG2956  272 LRRH 275
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 155-403 6.73e-11

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 65.78  E-value: 6.73e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 155 AIAYHLLKDYDMALKLLEEFRQTQQVPPNKIDYEYSELILY----QNQVMREADLLQESLEHIEMYEKQICDKLLVEEIK 230
Cdd:COG3914    5 ALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALlllaALAEAAAAALLALAAGEAAAAAAALLLLAALLELA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 231 GEILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEKALQIS-TLEERLQIYEEIskqhpkaitprrlpLTLVPENGEkep 309
Cdd:COG3914   85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALgRLEEALAALRRA--------------LALNPDFAE--- 147

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 310 pttllwVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCA 389
Cdd:COG3914  148 ------AYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLL 221

                        250
                 ....*....|....
gi 578825003 390 KYMLRANMIKEAEE 403
Cdd:COG3914  222 FALRQACDWEVYDR 235
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 43-220 4.16e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 63.09  E-value: 4.16e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  43 AEHGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSL 122
Cdd:COG3914   75 LLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGE 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 123 LQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMAlklLEEFRQTQQVPPNKIDYEYSEL-ILYQNQVMR 201
Cdd:COG3914  155 ALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEA---IAAYRRALELDPDNADAHSNLLfALRQACDWE 231

                        170
                 ....*....|....*....
gi 578825003 202 EADLLQESLEHIEMYEKQI 220
Cdd:COG3914  232 VYDRFEELLAALARGPSEL 250
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 149-403 8.77e-10

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 60.51  E-value: 8.77e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 149 ASWIGYAIAYHLLKDYDMALKLLEEFrqtqqvppNKIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEE 228
Cdd:COG2956    9 LGWYFKGLNYLLNGQPDKAIDLLEEA--------LELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 229 IKGEILLKLGRLKEASEVFKNLIDRNAENwcyyeglekalqISTLEERLQIYEEiSKQHPKAITPRRLPLTLVPENGEke 308
Cdd:COG2956   81 ELAQDYLKAGLLDRAEELLEKLLELDPDD------------AEALRLLAEIYEQ-EGDWEKAIEVLERLLKLGPENAH-- 145

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 309 ppttllwVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKC 388
Cdd:COG2956  146 -------AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRL 218

                        250
                 ....*....|....*
gi 578825003 389 AKYMLRANMIKEAEE 403
Cdd:COG2956  219 AELYEKLGDPEEALE 233
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
73-279 2.25e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 58.86  E-value: 2.25e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  73 LRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWI 152
Cdd:COG0457    1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 153 GYAIAYHLLKDYDMALKLLEEFRQtqqvppnkIDYEYSELILYQNQVMREADLLQESLEHIEMYEKQICDKLLVEEIKGE 232
Cdd:COG0457   81 NLGLALQALGRYEEALEDYDKALE--------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*..
gi 578825003 233 ILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEKALQISTLEERLQI 279
Cdd:COG0457  153 ALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLAL 199
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 64-193 2.41e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.17  E-value: 2.41e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  64 EAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQL 143
Cdd:COG4235    1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 578825003 144 RPTQRASWIGYAIAYHLLKDYDMALKLLEEFRqtQQVPPNKIDYEYSELI 193
Cdd:COG4235   81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLL--ALLPADAPARLLEASI 128
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
21-211 5.37e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 57.71  E-value: 5.37e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  21 YEQKQYKNGLKFCKMILS-NPKFAEhgeTLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEA 99
Cdd:COG0457   53 LRLGRYEEALADYEQALElDPDDAE---ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEA 129

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 100 IKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEEFRQTQQ 179
Cdd:COG0457  130 IEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209

                        170       180       190
                 ....*....|....*....|....*....|..
gi 578825003 180 VPPNKIDYEYSELILYQNQVMREADLLQESLE 211
Cdd:COG0457  210 KLAILTLAALAELLLLALALLLALRLAALALY 241
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 43-173 1.64e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 54.04  E-value: 1.64e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  43 AEHGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSL 122
Cdd:COG4783    1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 578825003 123 LQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYDMALKLLEE 173
Cdd:COG4783   81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 21-147 2.48e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.27  E-value: 2.48e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  21 YEQKQYKNGLKFCKMILSnpKFAEHGETLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAI 100
Cdd:COG4783   15 LLAGDYDEAEALLEKALE--LDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEAL 92

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 578825003 101 KCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQ 147
Cdd:COG4783   93 ALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 314-446 2.78e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 53.27  E-value: 2.78e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 314 LWVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYML 393
Cdd:COG4783    4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 578825003 394 RANMIKEAEEMCSKFTREGTSAMENLNEMQcmwfqteciSAYQRLGRYGDALK 446
Cdd:COG4783   84 KAGDYDEALALLEKALKLDPEHPEAYLRLA---------RAYRALGRPDEAIA 127
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 86-257 1.46e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 51.35  E-value: 1.46e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  86 YGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYD 165
Cdd:COG4783   10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 166 MALKLLEEfrqtqqvppnkidyeyselilyqnqvmreadLLQESLEHIEMYEKqicdkllveeiKGEILLKLGRLKEASE 245
Cdd:COG4783   90 EALALLEK-------------------------------ALKLDPEHPEAYLR-----------LARAYRALGRPDEAIA 127

                        170
                 ....*....|..
gi 578825003 246 VFKNLIDRNAEN 257
Cdd:COG4783  128 ALEKALELDPDD 139
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 86-173 1.88e-07

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 51.50  E-value: 1.88e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  86 YGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLKDYD 165
Cdd:COG5010   60 SDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139


                 ....*...
gi 578825003 166 MALKLLEE 173
Cdd:COG5010  140 EAKAALQR 147
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 6-173 2.48e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.81  E-value: 2.48e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003   6 LPPKESNLFKRILKCYEQ-KQYKNGLKFCKMILSNPKFAEHgeTLAMKGLTLNCLGKKEEAYEFVRKGLRNDVKSHVCWH 84
Cdd:COG2956  105 LDPDDAEALRLLAEIYEQeGDWEKAIEVLERLLKLGPENAH--AYCELAELYLEQGDYDEAIEALEKALKLDPDCARALL 182

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  85 VYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPtQRASWIGYAIAYHLLKDY 164
Cdd:COG2956  183 LLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDP-SDDLLLALADLLERKEGL 261


                 ....*....
gi 578825003 165 DMALKLLEE 173
Cdd:COG2956  262 EAALALLER 270
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 39-401 4.33e-07

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 53.55  E-value: 4.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003   39 NPKFAEHGETLAMKGLTLNclgKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILR 118
Cdd:TIGR02917 155 DPRSLYAKLGLAQLALAEN---RFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  119 DLSLLQIQMRDLEGYRETRYQLLQLRPTQ-RASWIGYAIAYHlLKDYDMALKLLEEFRqtqqvppnKIDYEYSELILYQN 197
Cdd:TIGR02917 232 ALATILIEAGEFEEAEKHADALLKKAPNSpLAHYLKALVDFQ-KKNYEDARETLQDAL--------KSAPEYLPALLLAG 302

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  198 QVMREADLLQESLEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGL-EKALQISTLEER 276
Cdd:TIGR02917 303 ASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLgEAYLALGDFEKA 382

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  277 LQIYEEISKQHPK-AITPRRLPLTLV----PENGEKEPPTT------LLWVQYFLAQHFDKLGQYSLALDYINAAIASTP 345
Cdd:TIGR02917 383 AEYLAKATELDPEnAAARTQLGISKLsqgdPSEAIADLETAaqldpeLGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 578825003  346 TLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEA 401
Cdd:TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 54-145 1.28e-06

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 48.80  E-value: 1.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  54 LTLNCLGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGY 133
Cdd:COG5010   62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEA 141

                         90
                 ....*....|..
gi 578825003 134 RETRYQLLQLRP 145
Cdd:COG5010  142 KAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
87-189 1.41e-06

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 49.91  E-value: 1.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  87 GLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEG----YRETryqlLQLRPTQRASWIGYAIAYHLLK 162
Cdd:COG4785   80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAaledFDRA----LELDPDYAYAYLNRGIALYYLG 155

                         90       100
                 ....*....|....*....|....*..
gi 578825003 163 DYDMALKLLEEFRQTQQVPPNKIDYEY 189
Cdd:COG4785  156 RYELAIADLEKALELDPNDPERALWLY 182
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
89-178 2.29e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 46.70  E-value: 2.29e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  89 LQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRyQLLQLRPTQRASWIGYAIAYHLLKDYDMAL 168
Cdd:COG3063    1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALE-KALKLDPNNAEALLNLAELLLELGDYDEAL 79

                         90
                 ....*....|
gi 578825003 169 KLLEEFRQTQ 178
Cdd:COG3063   80 AYLERALELD 89
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
59-149 5.52e-06

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 45.55  E-value: 5.52e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  59 LGKKEEAYEFVRKGLRNDVKSHVCWHVYGLLQRSDKKYDEAIKcYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRY 138
Cdd:COG3063    5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLE 83

                         90
                 ....*....|.
gi 578825003 139 QLLQLRPTQRA 149
Cdd:COG3063   84 RALELDPSALR 94
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 223-378 7.51e-06

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 46.34  E-value: 7.51e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 223 KLLVEEIKGEILLKLGRLKEASEVFKNLIDRNAENWCYYEGLEKAL-QISTLEERLQIYEEISKQHPKAitprrlpltlv 301
Cdd:COG4783    3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILlQLGDLDEAIVLLHEALELDPDE----------- 71

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578825003 302 pengekeppttlLWVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLD 378
Cdd:COG4783   72 ------------PEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELD 136
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
230-407 3.38e-05

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.15  E-value: 3.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 230 KGEILLKLGRLKEASEVFKNLIDRNAENWcyyeglekalqiSTLEERLQIYEEIsKQHPKAITPRRLPLTLVPENGEkep 309
Cdd:COG0457   14 LGLAYRRLGRYEEAIEDYEKALELDPDDA------------EALYNLGLAYLRL-GRYEEALADYEQALELDPDDAE--- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 310 pttllwVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCA 389
Cdd:COG0457   78 ------ALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLG 151

                        170
                 ....*....|....*...
gi 578825003 390 KYMLRANMIKEAEEMCSK 407
Cdd:COG0457  152 IALEKLGRYEEALELLEK 169
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 83-374 8.91e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 46.23  E-value: 8.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003   83 WHVYGLLQRSDKKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIGYAIAYHLLK 162
Cdd:TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  163 DYDMALKLLEEFRQTQQVPPNKIDYEYSeliLYqnqvMREADLLQESLEHIEMYEKQICDKLLVEeiKGEILLKLGRLKE 242
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALGFELEGD---LY----LRQKDYPAAIQAYRKALKRAPSSQNAIK--LHRALLASGNTAE 754

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  243 ASEVFKNLIDRNAENWC--YYEGlEKALQISTLEERLQIYEEISKQHPKAIT--------------PRRL-----PLTLV 301
Cdd:TIGR02917 755 AVKTLEAWLKTHPNDAVlrTALA-ELYLAQKDYDKAIKHYQTVVKKAPDNAVvlnnlawlylelkdPRALeyaerALKLA 833

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578825003  302 PENgekePPT--TLLWVQYflaqhfdKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEA 374
Cdd:TIGR02917 834 PNI----PAIldTLGWLLV-------EKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
318-453 1.38e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 44.23  E-value: 1.38e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 318 YFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANM 397
Cdd:COG0457   46 YNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGR 125

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 578825003 398 IKEAEEMCSKFTREGTSAMENLNEMQCmwfqtecisAYQRLGRYGDALKKCHEVER 453
Cdd:COG0457  126 YDEAIEAYERALELDPDDADALYNLGI---------ALEKLGRYEEALELLEKLEA 172
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 324-404 3.76e-04

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.87  E-value: 3.76e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 324 FDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEE 403
Cdd:COG5010   64 YNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKA 143


                 .
gi 578825003 404 M 404
Cdd:COG5010  144 A 144
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 94-403 6.21e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.53  E-value: 6.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003   94 KKYDEAIKCYRNALKLDKDNLQILRDLSLLQIQMRDLEGYRETRYQLLQLRPTQRASWIgyaiayhLLKDYDMALK---- 169
Cdd:TIGR02917 139 GQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALL-------LKGDLLLSLGniel 211

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  170 LLEEFRQTQQVPPNKIDYEYSE-LILYQNQVMREADllqeslEHIEMYEKQICDKLLVEEIKGEILLKLGRLKEASEVFK 248
Cdd:TIGR02917 212 ALAAYRKAIALRPNNIAVLLALaTILIEAGEFEEAE------KHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQ 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003  249 NLIDRNAEnwcYYEGLEKA----LQISTLEERLQIYEEISKQHPKAITPRRLpltlvpengekeppttllwvqyfLAQHF 324
Cdd:TIGR02917 286 DALKSAPE---YLPALLLAgaseYQLGNLEQAYQYLNQILKYAPNSHQARRL-----------------------LASIQ 339

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578825003  325 DKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYMLRANMIKEAEE 403
Cdd:TIGR02917 340 LRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIA 418
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
315-565 1.98e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 1.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 315 WVQYFLAQHFDKLGQYSLALDYINAAIASTPTLIELFYMKAKIYKHIGNLKEAAKWMDEAQSLDTADRFINSKCAKYMLR 394
Cdd:COG0457    9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 395 ANMIKEAEEMCSKFTREGTSAMENLNEMQCmwfqtecisAYQRLGRYGDALKKCHEVerhffeITDDQFDFHTYCMRKmt 474
Cdd:COG0457   89 LGRYEEALEDYDKALELDPDDAEALYNLGL---------ALLELGRYDEAIEAYERA------LELDPDDADALYNLG-- 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578825003 475 lRAYVDLLRLEDILRrhafYFKAARSAIEIYLKLYDNPLTNESKQQEINSENLSAKELKKMLSKQRRAQKKAKLEEERKH 554
Cdd:COG0457  152 -IALEKLGRYEEALE----LLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLA 226

                        250
                 ....*....|.
gi 578825003 555 AERERQQKNQK 565
Cdd:COG0457  227 LALLLALRLAA 237
TPR_1 pfam00515
Tetratricopeptide repeat;
87-113 2.39e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 36.24  E-value: 2.39e-03
                          10        20
                  ....*....|....*....|....*..
gi 578825003   87 GLLQRSDKKYDEAIKCYRNALKLDKDN 113
Cdd:pfam00515   8 GNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_11 pfam13414
TPR repeat;
95-127 7.65e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 34.75  E-value: 7.65e-03
                          10        20        30
                  ....*....|....*....|....*....|...
gi 578825003   95 KYDEAIKCYRNALKLDKDNLQILRDLSLLQIQM 127
Cdd:pfam13414   9 KYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKL 41
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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