|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
199-1027 |
7.42e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 96.28 E-value: 7.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERlsvaldggrspdvlsLESRNKTNEKLIAHLNIQVD 278
Cdd:TIGR02168 227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE---------------LRLEVSELEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 279 FLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKDLEETMAKLQ 358
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 359 LELNLCQKEKERLSDEllvksdletvVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKG 438
Cdd:TIGR02168 372 SRLEELEEQLETLRSK----------VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 439 IEEErdyyKKELERLQHiiQRRSCSTSYSAREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEKYmediQSNVKLL 518
Cdd:TIGR02168 442 LEEL----EEELEELQE--ELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGF----SEGVKAL 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 519 TAERDKLSVLYNEAQEELSALRKestqttaphnivslMEKEKELALSDLRR--IMAEKEALREKLEHIEEVSLFGKSELE 596
Cdd:TIGR02168 512 LKNQSGLSGILGVLSELISVDEG--------------YEAAIEAALGGRLQavVVENLNAAKKAIAFLKQNELGRVTFLP 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 597 KTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAgdsshqktEVNSLRIVNEQLQRSvdDYQHRL 676
Cdd:TIGR02168 578 LDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVL--------VVDDLDNALELAKKL--RPGYRI 647
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 677 SIKRGELESAQAqikILEEKIDELNLKMTSQDEEahvmkktigvidkekdflqetVDEKTEKIANLQENLANKEKAVAQM 756
Cdd:TIGR02168 648 VTLDGDLVRPGG---VITGGSAKTNSSILERRRE---------------------IEELEEKIEELEEKIAELEKALAEL 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 757 KIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQE 836
Cdd:TIGR02168 704 RKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAE 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 837 KEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRF-------QMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRH 909
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALDELRAELTLLNEEAanlrerlESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEE 863
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 910 LRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNL 989
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE 943
|
810 820 830
....*....|....*....|....*....|....*....
gi 578808689 990 EF-ERVVVELENVKSESDLLKKQLSNERHTVKNLESLLA 1027
Cdd:TIGR02168 944 RLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIK 982
|
|
| cc_Cep135_MBD |
cd22292 |
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar ... |
81-142 |
1.39e-18 |
|
coiled-coil microtubule binding domain of centrosomal protein of 135 kDa (Cep135) and similar proteins; Cep135, also called centrosomal protein 4, is involved in early centriole assembly, duplication, biogenesis, and formation. It is required for the recruitment of CEP295 to the proximal end of new-born centrioles at the centriolar microtubule wall during early S phase in a PLK4-dependent manner. This model corresponds to a conserved coiled-coil domain of Cep135, which is critical for microtubule binding.
Pssm-ID: 412088 [Multi-domain] Cd Length: 62 Bit Score: 80.69 E-value: 1.39e-18
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578808689 81 ENNELYLELMKLREHSDQHVKELKTSLKKCARETADLKFLNNQYAHKLKLLEKESKAKNERI 142
Cdd:cd22292 1 ENNELHLELIKLKEESDAKIKDLKSSLRKLEHENADLRFLNSQYLHKIKVLEKESKAKSEKI 62
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
77-843 |
2.14e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.17 E-value: 2.14e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 77 RLSRENNELYLELMKLREHS-DQHVKELKTSLKKCARETADLKFLNNQYAHKLKLLEKESKAKNERIQQLQeKNLHAVVQ 155
Cdd:TIGR02168 217 ELKAELRELELALLVLRLEElREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ-KELYALAN 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 156 TPGGKKRSIAFRRQRMQIDEPVPPS-EVSSYPVPQPDDPYIADLLQVADnRIQELQQEVHQLQEKLAMMESGVRDYSKQI 234
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLERQLEElEAQLEELESKLDELAEELAELEE-KLEELKEELESLEAELEELEAELEELESRL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 235 ELREREIERLSVALDGGRSpDVLSLESRNKTNEKLIAHLNIQVDFLQQANKDLEKRIRELmetketvtsevvNLSNKNEK 314
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLEL-QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEA------------ELKELQAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 315 LCQELTEIDQLAQQLERHkEEVLETADKELGEAK----DLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQ 390
Cdd:TIGR02168 442 LEELEEELEELQEELERL-EEALEELREELEEAEqaldAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 391 EKQRLSKKVE---------SFAVTERQLTLEVE-------------------RMRLEHGIKRRDRSPSRLDTFLKGIEE- 441
Cdd:TIGR02168 521 ILGVLSELISvdegyeaaiEAALGGRLQAVVVEnlnaakkaiaflkqnelgrVTFLPLDSIKGTEIQGNDREILKNIEGf 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 442 -----ERDYYKKELER-LQHIIQRRSCSTSY-SAREKSSIFRTPE-----KGDYNSEIHQITRERD-------ELQRMLE 502
Cdd:TIGR02168 601 lgvakDLVKFDPKLRKaLSYLLGGVLVVDDLdNALELAKKLRPGYrivtlDGDLVRPGGVITGGSAktnssilERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 503 RFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQttaphnivslMEKEKELALSDLRRIMAEKEALREKLE 582
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEE----------LSRQISALRKDLARLEAEVEQLEERIA 750
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 583 HIEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVagdsshqKTEVNSLRIVN 662
Cdd:TIGR02168 751 QLSKEL----TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDEL-------RAELTLLNEEA 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 663 EQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANL 742
Cdd:TIGR02168 820 ANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 743 QENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHK-ELDEVGRSREIAFKENRRLQDDLATMAR 821
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSlTLEEAEALENKIEDDEEEARRRLKRLEN 979
|
810 820
....*....|....*....|..
gi 578808689 822 ENQEISLELEAAVQEKEEMKSR 843
Cdd:TIGR02168 980 KIKELGPVNLAAIEEYEELKER 1001
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
675-955 |
2.05e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 68.56 E-value: 2.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 675 RLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTE-KIANLQENLANKEKAV 753
Cdd:TIGR02169 224 EGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEI 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 754 AQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAA 833
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 834 VQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRER 913
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 578808689 914 VELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDE 955
Cdd:TIGR02169 464 LSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
324-1055 |
3.96e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.77 E-value: 3.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 324 QLAQQLERHKEEvLETADKEL--GEAKDLEETMAKLQLELNLCQKEKERLSDELLVK----SDLETVVHQLEQEKQRLSK 397
Cdd:TIGR02168 210 EKAERYKELKAE-LRELELALlvLRLEELREELEELQEELKEAEEELEELTAELQELeeklEELRLEVSELEEEIEELQK 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 398 KVesFAVTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQrrscstsysarekssifrt 477
Cdd:TIGR02168 289 EL--YALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE------------------- 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 478 PEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQ---SNVKLLTAERDKLS--VLYNEAQEELSALRKESTQTtaphNI 552
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLEtlrSKVAQLELQIASLNneIERLEARLERLEDRRERLQQ----EI 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 553 VSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLEN 632
Cdd:TIGR02168 424 EELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEG 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 633 KLKVQAQKFSHVAGDSSHQKTEVNSLRiVNEQLQRSVDDY--QHRLSIKRGELESAQAQIKILEEK------IDELNLKM 704
Cdd:TIGR02168 504 FSEGVKALLKNQSGLSGILGVLSELIS-VDEGYEAAIEAAlgGRLQAVVVENLNAAKKAIAFLKQNelgrvtFLPLDSIK 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 705 TSQDEEAH--VMKKTIGVIDKEKDFlqETVDEKTEK-----------IANLQENLANKEKAVAQMKIMISECES------ 765
Cdd:TIGR02168 583 GTEIQGNDreILKNIEGFLGVAKDL--VKFDPKLRKalsyllggvlvVDDLDNALELAKKLRPGYRIVTLDGDLvrpggv 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 766 ---SVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKs 842
Cdd:TIGR02168 661 itgGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE- 739
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 843 rvhkyiTEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQ 922
Cdd:TIGR02168 740 ------AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT 813
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 923 EHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVK 1002
Cdd:TIGR02168 814 LLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLR 893
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|...
gi 578808689 1003 SESDLLKKQLSNERHTVKNLESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLT 1055
Cdd:TIGR02168 894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLS 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
624-1105 |
7.12e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 7.12e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 624 KETIESLENKLKVQAQKFSHVagdsshqKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLK 703
Cdd:COG1196 245 EAELEELEAELEELEAELAEL-------EAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEER 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 704 MTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINS 783
Cdd:COG1196 318 LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAE 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 784 LRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEK 863
Cdd:COG1196 398 LAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEA 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 864 ENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMS 943
Cdd:COG1196 478 ALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 944 RLEEELRHQEDEKATVLNDLSSLRElcikLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLE 1023
Cdd:COG1196 558 VAAAAIEYLKAAKAGRATFLPLDKI----RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 1024 SLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEM 1103
Cdd:COG1196 634 AALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
..
gi 578808689 1104 RR 1105
Cdd:COG1196 714 EE 715
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
203-803 |
8.10e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 66.63 E-value: 8.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 203 DNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLsvaldggrspdvlslesrnKTNEKLIAHLNIQVDFLQQ 282
Cdd:PRK03918 192 EELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL-------------------EELKEEIEELEKELESLEG 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 283 ANKDLEKRIRELMETKETVTSEVVNLsnknEKLCQELTEIDQLAQQLERHKEEVLETADKElgeaKDLEETMAKLQLELN 362
Cdd:PRK03918 253 SKRKLEEKIRELEERIEELKKEIEEL----EEKVKELKELKEKAEEYIKLSEFYEEYLDEL----REIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 363 LCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAvTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEE 442
Cdd:PRK03918 325 GIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 443 RDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPEKGDYNSEIHQitrerdelQRMLERFEKYMEDIQSNVKLLTAER 522
Cdd:PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR--------KELLEEYTAELKRIEKELKEIEEKE 475
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 523 DKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEhl 602
Cdd:PRK03918 476 RKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-- 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 603 tcvnhqLESEKYELKSKVLIMKETIESLENKLKVQAQKfshvagdsshqktevnSLRIVNEQLQRSVDDYQHRLSIK--R 680
Cdd:PRK03918 554 ------LKKKLAELEKKLDELEEELAELLKELEELGFE----------------SVEELEERLKELEPFYNEYLELKdaE 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 681 GELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGviDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMI 760
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE--ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRR 689
|
570 580 590 600
....*....|....*....|....*....|....*....|...
gi 578808689 761 SECESSVNQLKETLVNRDREinslRRQLDAAHKELDEVGRSRE 803
Cdd:PRK03918 690 EEIKKTLEKLKEELEEREKA----KKELEKLEKALERVEELRE 728
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
733-968 |
1.88e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 733 DEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRL 812
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRREL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 813 QDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGE 892
Cdd:COG1196 315 EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRA 394
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578808689 893 SSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRE 968
Cdd:COG1196 395 AAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
664-957 |
1.91e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 1.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 664 QLQRSVDDYQHRLSIKRgeLESAQAQIKILEEKIDELNLKMTSQDEEahvmkktIGVIDKEKDFLQETVDEKTEKIANLQ 743
Cdd:COG1196 217 ELKEELKELEAELLLLK--LRELEAELEELEAELEELEAELEELEAE-------LAELEAELEELRLELEELELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 744 ENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMAREN 823
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEAL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 824 QEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSI 903
Cdd:COG1196 368 LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA 447
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 578808689 904 DTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKA 957
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
481-842 |
4.31e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.32 E-value: 4.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 481 GDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLsvlyneaqEELSALRKESTQTTAphnivSLMEKEK 560
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKA--------ERYQALLKEKREYEG-----YELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 561 ELALSDLRRIMAEKEALREKLEHIEEVslfgKSELEKTIEHLTCVNHQL--------ESEKYELKSKVLIMKETIESLEN 632
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEE----ISELEKRLEEIEQLLEELnkkikdlgEEEQLRVKEKIGELEAEIASLER 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 633 KLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQhrlsikrGELESAQAQIKILEEKIDELNLKMTSQDEEAH 712
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-------KRRDKLTEEYAELKEELEDLRAELEEVDKEFA 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 713 VMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAH 792
Cdd:TIGR02169 382 ETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLA 461
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 578808689 793 KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKS 842
Cdd:TIGR02169 462 ADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
555-1119 |
4.90e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.80 E-value: 4.90e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 555 LMEKEKELALSDLRRIMAEKEALREKLEHIE---EVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLE 631
Cdd:COG1196 222 LKELEAELLLLKLRELEAELEELEAELEELEaelEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 632 NKLKVQAQKfshvagdsshqktevnslrivNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEA 711
Cdd:COG1196 302 QDIARLEER---------------------RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 712 HVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAA 791
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 792 HKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYI-TEVSRWESLMAAKEKENQDLLD 870
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLeAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 871 RFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEI---------QEHINAHHAYESQISSMAKA 941
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratflpldKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 942 MSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMtqqlnsKNLEFERVVVELEnvkSESDLLKKQLSNERHTVKN 1021
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRA------VTLAGRLREVTLE---GEGGSAGGSLTGGSRRELL 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 1022 LESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENtmLRAKVAQLQTDYDALKRQISTERYERERAIQ 1101
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLE--EELEEEALEEQLEAEREELLEELLEEEELLE 749
|
570
....*....|....*...
gi 578808689 1102 EMRRHGLATPPLSSTLRS 1119
Cdd:COG1196 750 EEALEELPEPPDLEELER 767
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
200-844 |
5.31e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 63.98 E-value: 5.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 200 QVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpdvLSLESRNKTNEKLIAHLNIQVDF 279
Cdd:pfam15921 138 QSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRS---ILVDFEEASGKKIYEHDSMSTMH 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 280 LQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQE-LTEIDQLAQQLERHKEEVLETADKELG----EAKDLEETM 354
Cdd:pfam15921 215 FRSLGSAISKILRELDTEISYLKGRIFPVEDQLEALKSEsQNKIELLLQQHQDRIEQLISEHEVEITglteKASSARSQA 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 355 AKLQLELNLCQkEKERLSDELLVK--SDLETVVHQLEQE----KQRLSKKVESFavtERQLTL--------EVERMRLEH 420
Cdd:pfam15921 295 NSIQSQLEIIQ-EQARNQNSMYMRqlSDLESTVSQLRSElreaKRMYEDKIEEL---EKQLVLanselteaRTERDQFSQ 370
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 421 GIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSsifrtpekgDYNSEIHQITRERDELQRM 500
Cdd:pfam15921 371 ESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELD---------DRNMEVQRLEALLKAMKSE 441
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 501 LE-RFEKYMEDIQ------SNVKLLTAERDKLSVLYNEAQEELSA--LRKESTQTTAPHNIVSLMEKEKELALSDlrrim 571
Cdd:pfam15921 442 CQgQMERQMAAIQgkneslEKVSSLTAQLESTKEMLRKVVEELTAkkMTLESSERTVSDLTASLQEKERAIEATN----- 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 572 AEKEALREKLEhieeVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQkfshvagdssHQ 651
Cdd:pfam15921 517 AEITKLRSRVD----LKLQELQHLKNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQ----------HG 582
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 652 KTeVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQET 731
Cdd:pfam15921 583 RT-AGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNE 661
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 732 VDEKTEKIANLQE-------NLANK----EKAVAQMKIMISECESSVNQLKETL--------------VNRDREINSLRR 786
Cdd:pfam15921 662 VKTSRNELNSLSEdyevlkrNFRNKseemETTTNKLKMQLKSAQSELEQTRNTLksmegsdghamkvaMGMQKQITAKRG 741
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578808689 787 QLDAAHKELD-------EVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRV 844
Cdd:pfam15921 742 QIDALQSKIQfleeamtNANKEKHFLKEEKNKLSQELSTVATEKNKMAGELEVLRSQERRLKEKV 806
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
199-968 |
1.41e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 62.39 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSPDVLSLESRNKTNEKLIAHLNIQVD 278
Cdd:TIGR02169 232 KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIA 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 279 FLQQANKDLEKRIRELMETKETVTSEVVNLSN-------KNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKDLE 351
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEReieeerkRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYR 391
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 352 ETMAKLQLELNLCQKEKERLSDEllvKSDLETVVHQLEQEKQRLSKKVESF--AVTERQLTLEVERMRLEHGIKRRDRSP 429
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEE---LQRLSEELADLNAAIAGIEAKINELeeEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 430 SRldtfLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPE-KGDYNSEIHQITRerdELQRMLERFEKYM 508
Cdd:TIGR02169 469 QE----LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEvLKASIQGVHGTVA---QLGSVGERYATAI 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 509 EDIQSNvklltaeRDKLSVLYNE--AQE--ELSALRKESTQTTAPHNIVSLMEKEKELALSD------------------ 566
Cdd:TIGR02169 542 EVAAGN-------RLNNVVVEDDavAKEaiELLKRRKAGRATFLPLNKMRDERRDLSILSEDgvigfavdlvefdpkyep 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 567 -----LRR--IMAEKEALREKLEHIEEVSLFGKSeLEKT--IEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQ 637
Cdd:TIGR02169 615 afkyvFGDtlVVEDIEAARRLMGKYRMVTLEGEL-FEKSgaMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 638 AQKFshvagdsSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEeahvmkkt 717
Cdd:TIGR02169 694 QSEL-------RRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-------- 758
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 718 igvidkEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSvnQLKEtlvnrdrEINSLRRQLDAAHKELDE 797
Cdd:TIGR02169 759 ------ELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS--KLEE-------EVSRIEARLREIEQKLNR 823
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 798 VGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHN 877
Cdd:TIGR02169 824 LTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 878 RAEDWEVKAHQAEgESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKA 957
Cdd:TIGR02169 904 KIEELEAQIEKKR-KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYE 982
|
810
....*....|.
gi 578808689 958 TVLNDLSSLRE 968
Cdd:TIGR02169 983 EVLKRLDELKE 993
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
203-812 |
2.29e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 2.29e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 203 DNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNKTNEKLIAHLNI------- 275
Cdd:TIGR04523 32 DTEEKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQ-QIKDLNDKLKKNKDKINKLNSdlskins 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 276 -------QVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAK 348
Cdd:TIGR04523 111 eikndkeQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNID 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 349 DLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQL----EQEKQRLSKKVESFAVTERQL-TLEVERMRLEHGIK 423
Cdd:TIGR04523 191 KIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLkdniEKKQQEINEKTTEISNTQTQLnQLKDEQNKIKKQLS 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 424 RRDRSPSRLDTFLKGIEEERDYYKKELERLQhiiqrrscstsysaREKSSIFRTpekgDYNSEIHQITRERDELQRMLER 503
Cdd:TIGR04523 271 EKQKELEQNNKKIKELEKQLNQLKSEISDLN--------------NQKEQDWNK----ELKSELKNQEKKLEEIQNQISQ 332
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 504 FEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELsalrkestqtTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEH 583
Cdd:TIGR04523 333 NNKIISQLNEQISQLKKELTNSESENSEKQREL----------EEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQN 402
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 584 IEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNE 663
Cdd:TIGR04523 403 QEKLN----QQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSIN 478
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 664 QLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTE--KIAN 741
Cdd:TIGR04523 479 KIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFelKKEN 558
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578808689 742 LQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRL 812
Cdd:TIGR04523 559 LEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKL 629
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
534-1025 |
2.43e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 61.59 E-value: 2.43e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 534 EELSALRKESTQTTAphnIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEvslfgkseLEKTIEHLTCVNHQLESEK 613
Cdd:PRK02224 206 ERLNGLESELAELDE---EIERYEEQREQARETRDEADEVLEEHEERREELET--------LEAEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 614 YELKSKVLIMKETIESLENKLkvqaqkfSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKIL 693
Cdd:PRK02224 275 EELAEEVRDLRERLEELEEER-------DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESL 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 694 EEKIDELnlkmtsqDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKET 773
Cdd:PRK02224 348 REDADDL-------EERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 774 LVNRDREINSLRRQLDAAHKELDEVGRSRE-------------------IAFKENRR--LQDDLATMARENQEISLELEA 832
Cdd:PRK02224 421 RDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegsphvetIEEDRERVeeLEAELEDLEEEVEEVEERLER 500
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 833 AVQEKeEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAED-------WEVKAHQAEGESSSVRLELLSIDT 905
Cdd:PRK02224 501 AEDLV-EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaeaeeKREAAAEAEEEAEEAREEVAELNS 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 906 ERRHLRERVELLEKeIQEHINAHHAYESQISSMAKAMSRLEEelrhQEDEKATVLNDLSS-LRELCIKLDsGKDIMTQQL 984
Cdd:PRK02224 580 KLAELKERIESLER-IRTLLAAIADAEDEIERLREKREALAE----LNDERRERLAEKRErKRELEAEFD-EARIEEARE 653
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 578808689 985 NSKNLE--FERVVVELENVKSESDLLKKQLSNERHTVKNLESL 1025
Cdd:PRK02224 654 DKERAEeyLEQVEEKLDELREERDDLQAEIGAVENELEELEEL 696
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
520-1105 |
5.09e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 5.09e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 520 AERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSL----MEKEKELALSDLRRIMAEKEALREKLEHIEEvslfGKSEL 595
Cdd:TIGR02168 239 EELEELQEELKEAEEELEELTAELQELEEKLEELRLevseLEEEIEELQKELYALANEISRLEQQKQILRE----RLANL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 596 EKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHR 675
Cdd:TIGR02168 315 ERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ 394
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 676 LSIKRGELESAQAQIKILEEKIDELnlkmtSQDEEAHVMKKTigviDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQ 755
Cdd:TIGR02168 395 IASLNNEIERLEARLERLEDRRERL-----QQEIEELLKKLE----EAELKELQAELEELEEELEELQEELERLEEALEE 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 756 MKIMISECESSVNQLKETLVNRDREINSLRRQLDaahkELDEVGRSREIAFKENRRLQDDLATMA---RENQEISLELEA 832
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGVLSeliSVDEGYEAAIEA 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 833 AVQEkeemksRVHKYITE-VSRWESLMAAKEKENQD-----LLDRFQMLHNRAEDWEVKAHQAEGESSSVRLE------- 899
Cdd:TIGR02168 542 ALGG------RLQAVVVEnLNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVkfdpklr 615
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 900 ---------LLSIDTERRHLRERVELLEKEI-------------------QEHINAHHAYESQISSMAKAMSRLEEELRH 951
Cdd:TIGR02168 616 kalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAE 695
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 952 QEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATNRD 1031
Cdd:TIGR02168 696 LEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578808689 1032 KEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEMRR 1105
Cdd:TIGR02168 776 ELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
484-969 |
6.31e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 60.03 E-value: 6.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 484 NSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELA 563
Cdd:TIGR04523 158 NNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSLESQISELKKQNNQLKDNIEKK 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 564 LSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNH---QLESEKYELKSKVLIMK---------------- 624
Cdd:TIGR04523 238 QQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKkikELEKQLNQLKSEISDLNnqkeqdwnkelkselk 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 625 ---ETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELN 701
Cdd:TIGR04523 318 nqeKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 702 LKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREI 781
Cdd:TIGR04523 398 SKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSI 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 782 NSLRRQLDAAHKELDEvgrsreiafKENrrlqdDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLMAAK 861
Cdd:TIGR04523 478 NKIKQNLEQKQKELKS---------KEK-----ELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDL 543
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 862 EKENQDLLDRFqmlhNRAEDWEVKAHQAEgESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKA 941
Cdd:TIGR04523 544 EDELNKDDFEL----KKENLEKEIDEKNK-EIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
490 500
....*....|....*....|....*...
gi 578808689 942 MSRLEEELRHQEDEKATVLNDLSSLREL 969
Cdd:TIGR04523 619 LEKAKKENEKLSSIIKNIKSKKNKLKQE 646
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
199-839 |
6.65e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 6.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNKTNEKLIAHLNIQVD 278
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA-ELEEVDKEFAETRDELKDYREKLE 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 279 FLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLE---RHKEEVLETADKELGEAK----DLE 351
Cdd:TIGR02169 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleiKKQEWKLEQLAADLSKYEqelyDLK 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 352 ETMAKLQLELNLCQKEKERL---------------SDELLVKSDLETV---VHQLEQEKQRLSKKVES-------FAVTE 406
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAeaqaraseervrggrAVEEVLKASIQGVhgtVAQLGSVGERYATAIEVaagnrlnNVVVE 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 407 RQLT------------------LEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKK--------------ELERlQ 454
Cdd:TIGR02169 556 DDAVakeaiellkrrkagratfLPLNKMRDERRDLSILSEDGVIGFAVDLVEFDPKYEPAfkyvfgdtlvvediEAAR-R 634
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 455 HIIQRRSCSTSYSAREKSSI----FRTPEKGDYNSeihqiTRERDELQRM---LERFEKYMEDIQSNVKLLTAERDKLSV 527
Cdd:TIGR02169 635 LMGKYRMVTLEGELFEKSGAmtggSRAPRGGILFS-----RSEPAELQRLrerLEGLKRELSSLQSELRRIENRLDELSQ 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 528 LYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRR----IMAEKEALREKLEHIEEVSLFGKSELEKTIEHLt 603
Cdd:TIGR02169 710 ELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQeienVKSELKELEARIEELEEDLHKLEEALNDLEARL- 788
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 604 cvNH----QLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIK 679
Cdd:TIGR02169 789 --SHsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 680 RGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMkIM 759
Cdd:TIGR02169 867 EEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED-EE 945
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 760 ISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREiafkenrRLQDDLATMARENQEISLELEAAVQEKEE 839
Cdd:TIGR02169 946 IPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLD-------ELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
322-1027 |
7.95e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.08 E-value: 7.95e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 322 IDQLAQQLERHKEEvLETADKELGEAKDLEETMAKLQL-ELNLCQKEKERLSDELlvkSDLETVVHQLEQEKQRLSKKVE 400
Cdd:TIGR02169 193 IDEKRQQLERLRRE-REKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQL---ASLEEELEKLTEEISELEKRLE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 401 SFAVTERQLTLEVERMRlehgikrrdrspsrldtflkgiEEERDYYKKELERLQhiIQRRSCSTSYSAREKSSIFRTPEK 480
Cdd:TIGR02169 269 EIEQLLEELNKKIKDLG----------------------EEEQLRVKEKIGELE--AEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 481 GDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKL-------SVLYNEAQEELSALRKESTQTTAPHNiv 553
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLraeleevDKEFAETRDELKDYREKLEKLKREIN-- 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 554 sLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYEL---KSKVLIMKETIESL 630
Cdd:TIGR02169 403 -ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLskyEQELYDLKEEYDRV 481
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 631 ENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVD--------------DYQHRLSIKRG---------ELESAQ 687
Cdd:TIGR02169 482 EKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQgvhgtvaqlgsvgeRYATAIEVAAGnrlnnvvveDDAVAK 561
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 688 AQIKIL-EEKIDELNL----KMTSQDEEAHVMKKTiGVIDKEKDFLqeTVDEKTEKI----------------------- 739
Cdd:TIGR02169 562 EAIELLkRRKAGRATFlplnKMRDERRDLSILSED-GVIGFAVDLV--EFDPKYEPAfkyvfgdtlvvedieaarrlmgk 638
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 740 ------------------------ANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKEL 795
Cdd:TIGR02169 639 yrmvtlegelfeksgamtggsrapRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI 718
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 796 DEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEmksrvhkYITEVSRWESLMAAKEKENQDLLDRfqML 875
Cdd:TIGR02169 719 GEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKE-------LEARIEELEEDLHKLEEALNDLEAR--LS 789
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 876 HNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDE 955
Cdd:TIGR02169 790 HSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEE 869
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578808689 956 KATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLA 1027
Cdd:TIGR02169 870 LEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG 941
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
280-775 |
4.67e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.44 E-value: 4.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 280 LQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQL-----ERHKEEVLETADKELGEAKDLEE-- 352
Cdd:pfam15921 333 LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLladlhKREKELSLEKEQNKRLWDRDTGNsi 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 353 TMAKLQLELNLCQKEKERLsdELLVKSDLETVVHQLEQEKQRLSKKVESFAVTErQLTLEVERMRlehgikrrdrspsrl 432
Cdd:pfam15921 413 TIDHLRRELDDRNMEVQRL--EALLKAMKSECQGQMERQMAAIQGKNESLEKVS-SLTAQLESTK--------------- 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 433 dTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIfrtpekgdyNSEIHQITRERD----ELQRmLERFEKYM 508
Cdd:pfam15921 475 -EMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAT---------NAEITKLRSRVDlklqELQH-LKNEGDHL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 509 EDIQSN---VKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNI-VSLMEKE---KELALSDLRRIMAEKEALREKL 581
Cdd:pfam15921 544 RNVQTEceaLKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVeKAQLEKEindRRLELQEFKILKDKKDAKIREL 623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 582 E------HIEEVSLFG------------KSELEKTIEHLTCVNHQLE--SEKYE-LKSKVLIMKETIESLENKLKVQAQK 640
Cdd:pfam15921 624 EarvsdlELEKVKLVNagserlravkdiKQERDQLLNEVKTSRNELNslSEDYEvLKRNFRNKSEEMETTTNKLKMQLKS 703
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 641 fshVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGV 720
Cdd:pfam15921 704 ---AQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELST 780
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 578808689 721 IDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLV 775
Cdd:pfam15921 781 VATEKNKMAGELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESV 835
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
501-1105 |
6.19e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 6.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 501 LERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQttaphnivslMEKEKELALSDLRRIMAEKEALREK 580
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE----------LEEEIEELQKELYALANEISRLEQQ 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 581 LEHIEEvslfGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRI 660
Cdd:TIGR02168 304 KQILRE----RLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 661 VNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELnlkmtSQDEEAHVMKKTigviDKEKDFLQETVDEKTEKIA 740
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERL-----QQEIEELLKKLE----EAELKELQAELEELEEELE 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 741 NLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDaahkELDEVGRSREIAFKENRRLQDDLATMA 820
Cdd:TIGR02168 451 ELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQE----NLEGFSEGVKALLKNQSGLSGILGVLS 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 821 ---RENQEISLELEAAVQEkeemksRVHKYITE-VSRWESLMAAKEKENQD-----LLDRFQMLHNRAEDWEVKAHQAEG 891
Cdd:TIGR02168 527 eliSVDEGYEAAIEAALGG------RLQAVVVEnLNAAKKAIAFLKQNELGrvtflPLDSIKGTEIQGNDREILKNIEGF 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 892 ESSSVRLE----------------LLSIDTERRHLRERVELLEKEI-------------------QEHINAHHAYESQIS 936
Cdd:TIGR02168 601 LGVAKDLVkfdpklrkalsyllggVLVVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsAKTNSSILERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 937 SMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNER 1016
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 1017 HTVKNLESLLATNRDKEfhshltsHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISTERYER 1096
Cdd:TIGR02168 761 AEIEELEERLEEAEEEL-------AEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
....*....
gi 578808689 1097 ERAIQEMRR 1105
Cdd:TIGR02168 834 AATERRLED 842
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
669-1026 |
6.34e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.00 E-value: 6.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 669 VDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKM-TSQDEEAHVMKktigvIDKEKDFLQETvdEKTEKIANLQENLA 747
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLeRLRREREKAER-----YQALLKEKREY--EGYELLKEKEALER 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 748 NKEKAVAQmkimISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKEnrrlqdDLATMARENQEIS 827
Cdd:TIGR02169 238 QKEAIERQ----LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE------KIGELEAEIASLE 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 828 LELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNraedwEVKAHQAEGESSSVRLEllSIDTER 907
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTE-----EYAELKEELEDLRAELE--EVDKEF 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 908 RHLRERVELLEKEIQEhinahhaYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDimtqqlnSK 987
Cdd:TIGR02169 381 AETRDELKDYREKLEK-------LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE-------DK 446
|
330 340 350
....*....|....*....|....*....|....*....
gi 578808689 988 NLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLL 1026
Cdd:TIGR02169 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
320-883 |
4.57e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.28 E-value: 4.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 320 TEIDQLAQQLERHKE------EVLETADKELGEAKDLEETMAKLQLELNLCQKEKERLSDELlvkSDLETVVHQLEQEKq 393
Cdd:PRK02224 220 EEIERYEEQREQAREtrdeadEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV---RDLRERLEELEEER- 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 394 rlskkvesfavTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEER---DYYKKELERLQHIIQRRScSTSYSARE 470
Cdd:PRK02224 296 -----------DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRvaaQAHNEEAESLREDADDLE-ERAEELRE 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 471 KSsifrtpekGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKEstqttaph 550
Cdd:PRK02224 364 EA--------AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELRER-------- 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 551 nivslmEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEhltcvnhQLESEKYELKSKVLIMKETIESL 630
Cdd:PRK02224 428 ------EAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIE-------EDRERVEELEAELEDLEEEVEEV 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 631 ENKLKvqaqkfshVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEE 710
Cdd:PRK02224 495 EERLE--------RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 711 AHVMKKTIGVIDKEkdflQETVDEKTEKIANLQENLAnkekavaqmkiMISECESSVNQLKETLVNRDrEINSLRRQLDA 790
Cdd:PRK02224 567 AEEAREEVAELNSK----LAELKERIESLERIRTLLA-----------AIADAEDEIERLREKREALA-ELNDERRERLA 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 791 AHKEldevgRSREIA--FKENR--RLQDDLATMARENQEISLELEAAVQEKEEMKSRVHKYITEVSRWESLmAAKEKENQ 866
Cdd:PRK02224 631 EKRE-----RKRELEaeFDEARieEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEEL-RERREALE 704
|
570
....*....|....*..
gi 578808689 867 DLLDRFQMLHNRAEDWE 883
Cdd:PRK02224 705 NRVEALEALYDEAEELE 721
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
225-957 |
6.19e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 6.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 225 SGVRDYSKQIELREREIERLsvaldggrspdvlslESRNKTNEKLIAHLNIQVDFLQQANKDLEkRIRELMETKETVtsE 304
Cdd:TIGR02169 163 AGVAEFDRKKEKALEELEEV---------------EENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREY--E 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 305 VVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLEtadkelgEAKDLEETMAKLQLELNLCQKEKERLSDE--LLVKSDLE 382
Cdd:TIGR02169 225 GYELLKEKEALERQKEAIERQLASLEEELEKLTE-------EISELEKRLEEIEQLLEELNKKIKDLGEEeqLRVKEKIG 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 383 TVVHQLEQEKQRLS-KKVESFAVTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRS 461
Cdd:TIGR02169 298 ELEAEIASLERSIAeKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVD 377
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 462 cSTSYSAREKSSIFRTpEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRK 541
Cdd:TIGR02169 378 -KEFAETRDELKDYRE-KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 542 ESTQTTAphnIVSLMEKEKELALSDLRRIMAEKEALREKLEHIE-------EVSLFGKS---ELEKTIEHLTCVNHQLES 611
Cdd:TIGR02169 456 KLEQLAA---DLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEaqaraseERVRGGRAveeVLKASIQGVHGTVAQLGS 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 612 --EKYELKSKV--------------LIMKETIESLE------------NKLKVQ-------------------------- 637
Cdd:TIGR02169 533 vgERYATAIEVaagnrlnnvvveddAVAKEAIELLKrrkagratflplNKMRDErrdlsilsedgvigfavdlvefdpky 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 638 AQKFSHVAGDS------SHQKTEVNSLRIVN--------------------------EQLQRSVDDYQHRLSIKRGELES 685
Cdd:TIGR02169 613 EPAFKYVFGDTlvvediEAARRLMGKYRMVTlegelfeksgamtggsraprggilfsRSEPAELQRLRERLEGLKRELSS 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 686 AQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKavaqmkiMISECES 765
Cdd:TIGR02169 693 LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS-------ELKELEA 765
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 766 SVNQLKETLVNRDREINSLRRQLdaAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRVH 845
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEARL--SHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRI 843
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 846 KyitevsrWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHi 925
Cdd:TIGR02169 844 D-------LKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKK- 915
|
810 820 830
....*....|....*....|....*....|..
gi 578808689 926 nahhayESQISSMAKAMSRLEEELRHQEDEKA 957
Cdd:TIGR02169 916 ------RKRLSELKAKLEALEEELSEIEDPKG 941
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
196-534 |
1.01e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.15 E-value: 1.01e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 196 ADLLQVADnRIQELQQEVHQLQEKLAMMESGV-------RDYSKQIELREREIERlsvaldggrspdvlsLESRNKTNEK 268
Cdd:TIGR02169 674 AELQRLRE-RLEGLKRELSSLQSELRRIENRLdelsqelSDASRKIGEIEKEIEQ---------------LEQEEEKLKE 737
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 269 LIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTeiDQLAQQLERHKEEVLETADKELGEAK 348
Cdd:TIGR02169 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLS--HSRIPEIQAELSKLEEEVSRIEARLR 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 349 DLEETMAKLQLELNLCQKEKERLSDELLvksDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEHGIKRRDRs 428
Cdd:TIGR02169 816 EIEQKLNRLTLEKEYLEKEIQELQEQRI---DLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER- 891
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 429 pSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPEKGDYNSE----IHQITRERDELQRMLERF 504
Cdd:TIGR02169 892 -DELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEeelsLEDVQAELQRVEEEIRAL 970
|
330 340 350
....*....|....*....|....*....|....
gi 578808689 505 E----KYMEDIQSNVKLLTAERDKLSVLYNEAQE 534
Cdd:TIGR02169 971 EpvnmLAIQEYEEVLKRLDELKEKRAKLEEERKA 1004
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
326-923 |
2.46e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 2.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 326 AQQLERHKE--EVLETADKELG--EAKDLEETMAKLQLELNLCQKEKERLSDELlvkSDLETVVHQLEQEKQRLSKKVES 401
Cdd:COG1196 209 AEKAERYRElkEELKELEAELLllKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEELELELEE 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 402 FAVTERQLTLEVERmrLEHGIKRRDRSpsrldtfLKGIEEERDYYKKELERLQHiiQRRSCSTSYSAREKSSIFRTPEKG 481
Cdd:COG1196 286 AQAEEYELLAELAR--LEQDIARLEER-------RRELEERLEELEEELAELEE--ELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 482 DYNSEIHQITRERDELQRMLERFEKymEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKE 561
Cdd:COG1196 355 EAEAELAEAEEALLEAEAELAEAEE--ELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 562 LALSDLRRIMAEKEALREKLEHIEEvslfgKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQ-- 639
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEE-----EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGfl 507
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 640 ---KFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELN-----LKMTSQDEEA 711
Cdd:COG1196 508 egvKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflPLDKIRARAA 587
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 712 HVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKimisecesSVNQLKETLVNRDREINSLRRQLDAA 791
Cdd:COG1196 588 LAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLE--------AALRRAVTLAGRLREVTLEGEGGSAG 659
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 792 HKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSRvhkyitevsrwesLMAAKEKENQDLLDR 871
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE-------------AEEERLEEELEEEAL 726
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 578808689 872 FQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQE 923
Cdd:COG1196 727 EEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
781-1031 |
7.04e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.42 E-value: 7.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 781 INSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISlELEAAVQEKEEMKsrvhkyitevsrweslmAA 860
Cdd:PRK02224 208 LNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELE-TLEAEIEDLRETI-----------------AE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 861 KEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAK 940
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 941 AMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVK 1020
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREA 429
|
250
....*....|.
gi 578808689 1021 NLESLLATNRD 1031
Cdd:PRK02224 430 ELEATLRTARE 440
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
124-631 |
7.22e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.32 E-value: 7.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 124 YAHKLKLLEKESKAKNERIQQLQEKNLHAVVQTpggKKRSIAFRRQRMQIDEpvppsevssypvpqpddpyIADLLQVAD 203
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAEL---AELEAELEELRLELEE-------------------LELELEEAQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 204 NRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNKTNEKLIAHLNIQVDFLQQA 283
Cdd:COG1196 288 AEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEE-ELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 284 NKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELT-----------EIDQLAQQLERHKEEVLETADKELGEAKDLEE 352
Cdd:COG1196 367 LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEeleeaeealleRLERLEEELEELEEALAELEEEEEEEEEALEE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 353 TMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEHGIKRRDRSPSRL 432
Cdd:COG1196 447 AAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 433 DTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSARE----------------KSSIFRTPEKGDYNSEIHQITRERDE 496
Cdd:COG1196 527 AVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEylkaakagratflpldKIRARAALAAALARGAIGAAVDLVAS 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 497 LQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEA 576
Cdd:COG1196 607 DLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAE 686
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 578808689 577 LREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLE 631
Cdd:COG1196 687 RLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEEL 741
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
334-946 |
7.80e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.06 E-value: 7.80e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 334 EEVLETADKELGEAKDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEV 413
Cdd:PRK03918 144 DESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 414 ERMRLEhgIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPEKGDYNSEIHQITRE 493
Cdd:PRK03918 224 EKLEKE--VKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEF 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 494 RDELQRMLERFEKYMEDIQSNVKLLTAERDKLSvlynEAQEELSALRKESTQTTAPHNIVslmeKEKELALSDLRRIMAE 573
Cdd:PRK03918 302 YEEYLDELREIEKRLSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEEL----EERHELYEEAKAKKEE 373
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 574 KEALREKLEHIEEVSLFGK-SELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLEnklkvqaqkfshvagdSSHQK 652
Cdd:PRK03918 374 LERLKKRLTGLTPEKLEKElEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELK----------------KAKGK 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 653 TEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNlKMTSQDEEAHVMKKTIGVIDKEKDFLQETV 732
Cdd:PRK03918 438 CPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKELEEKLKKYN 516
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 733 DEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSreiAFKENRRL 812
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFE---SVEELEER 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 813 QDDLATMAREnqeiSLELEAAVQEKEEMKSRVHKYITEVSrweslmaAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGE 892
Cdd:PRK03918 594 LKELEPFYNE----YLELKDAEKELEREEKELKKLEEELD-------KAFEELAETEKRLEELRKELEELEKKYSEEEYE 662
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 578808689 893 ssSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLE 946
Cdd:PRK03918 663 --ELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
666-871 |
8.69e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 49.38 E-value: 8.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 666 QRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQEN 745
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 746 LANKEKAVAQM-----------KIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQD 814
Cdd:COG4942 99 LEAQKEELAELlralyrlgrqpPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 578808689 815 DLATMARENQeislELEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDR 871
Cdd:COG4942 179 LLAELEEERA----ALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
196-419 |
1.21e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 1.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 196 ADLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNKTNEKLIAHLNI 275
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQ-ELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 276 QvdfLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKDLEETMA 355
Cdd:COG4942 98 E---LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578808689 356 KLQLELNLCQKEKERLSDEllvKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLE 419
Cdd:COG4942 175 ELEALLAELEEERAALEAL---KAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
195-361 |
2.37e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.37e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 195 IADLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQI--------ELREREIERLSVALDGGRSP---------DVL 257
Cdd:COG4942 53 LLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIaelraeleAQKEELAELLRALYRLGRQPplalllspeDFL 132
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 258 SLESRNKTNEKLIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVL 337
Cdd:COG4942 133 DAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELA 212
|
170 180
....*....|....*....|....
gi 578808689 338 ETADKELGEAKDLEETMAKLQLEL 361
Cdd:COG4942 213 AELAELQQEAEELEALIARLEAEA 236
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
729-958 |
2.65e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 2.65e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 729 QETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKE 808
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 809 NRRLQDDLATMARENQEIS----LELEAAVQEKEEMKSRVHKYitevsrwESLMAAKEKENQDLLDRFQMLHNRAEDWEV 884
Cdd:COG4942 99 LEAQKEELAELLRALYRLGrqppLALLLSPEDFLDAVRRLQYL-------KYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 578808689 885 KAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKAT 958
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
202-414 |
2.76e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 47.90 E-value: 2.76e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 202 ADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDggrspdvlSLESRNKTNEKLIAHLNIQVDflq 281
Cdd:COG3883 14 ADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELE--------ALQAEIDKLQAEIAEAEAEIE--- 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 282 QANKDLEKRIRELMETKETVTSEVVNLSNKNekLCQELTEIDQLAQQLERHKEEVLETADKElgeaKDLEETMAKLQLEL 361
Cdd:COG3883 83 ERREELGERARALYRSGGSVSYLDVLLGSES--FSDFLDRLSALSKIADADADLLEELKADK----AELEAKKAELEAKL 156
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 578808689 362 NLCQKEKERLSDEllvKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVE 414
Cdd:COG3883 157 AELEALKAELEAA---KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELA 206
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
768-1104 |
3.96e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.13 E-value: 3.96e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 768 NQLKETLVNRDR---EINSLRRQLDAAHKELDEVGRSREIAfKENRRLQDDLATmarenqeisLELEAAVQEKEEMKSRV 844
Cdd:TIGR02168 179 RKLERTRENLDRledILNELERQLKSLERQAEKAERYKELK-AELRELELALLV---------LRLEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 845 HKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEH 924
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEEL 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 925 inahhayESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELcikldsgkdimTQQLNSKNLEFErvvVELENVKSE 1004
Cdd:TIGR02168 329 -------ESKLDELAEELAELEEKLEELKEELESLEAELEELEAE-----------LEELESRLEELE---EQLETLRSK 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 1005 SDLLKKQLSNERHTVKNLESLLatnrdkefhSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDA 1084
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARL---------ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
330 340
....*....|....*....|
gi 578808689 1085 LKRQISTERYERERAIQEMR 1104
Cdd:TIGR02168 459 LEEALEELREELEEAEQALD 478
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
524-1106 |
4.81e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 4.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 524 KLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKealREKLEHIEEVSLFGKSELEKTIEHlt 603
Cdd:pfam05483 216 KLKEDHEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEES---RDKANQLEEKTKLQDENLKELIEK-- 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 604 cvNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLR----IVNEQLQRSVDDYQHRLSIK 679
Cdd:pfam05483 291 --KDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKaahsFVVTEFEATTCSLEELLRTE 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 680 RGELESAQAQIKILEEKIDelnlKMTSQDEEAHVMKKTigvidkekdflQETVDEKTEKIANLQENLANKEKavaQMKIM 759
Cdd:pfam05483 369 QQRLEKNEDQLKIITMELQ----KKSSELEEMTKFKNN-----------KEVELEELKKILAEDEKLLDEKK---QFEKI 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 760 ISECESSVNQLKETLVNRDREINSLRRQLDAahkeldeVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEE 839
Cdd:pfam05483 431 AEELKGKEQELIFLLQAREKEIHDLEIQLTA-------IKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 840 MKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLH----NRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVE 915
Cdd:pfam05483 504 LTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEekemNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVL 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 916 LLEKEIQEHINAHHAYESQISSMAKAMSRLEEE---LRHQEDEKATVLNDLS-SLRELCIKLDSGK-------DIMTQQL 984
Cdd:pfam05483 584 KKEKQMKILENKCNNLKKQIENKNKNIEELHQEnkaLKKKGSAENKQLNAYEiKVNKLELELASAKqkfeeiiDNYQKEI 663
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 985 NSKNLEFERVVVELENVKSESD----LLKKQLSNERHTVKNLESLLATNRdkefhshltsHEKDTEIQLLKEKLTLSESK 1060
Cdd:pfam05483 664 EDKKISEEKLLEEVEKAKAIADeavkLQKEIDKRCQHKIAEMVALMEKHK----------HQYDKIIEERDSELGLYKNK 733
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 578808689 1061 LTSQSRENTMLRAKVAQLQTDYDALKRQISTERYERERAIQEMRRH 1106
Cdd:pfam05483 734 EQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKEN 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
265-460 |
5.10e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 5.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 265 TNEKLIAHLNIQVDFLQQANKDLEKRIRELmETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERhKEEVLETADKEL 344
Cdd:COG4913 607 DNRAKLAALEAELAELEEELAEAEERLEAL-EAELDALQERREALQRLAEYSWDEIDVASAEREIAE-LEAELERLDASS 684
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 345 GEAKDLEETMAKLQLELNLCQKEKERLSDEllvKSDLETVVHQLEQEKQRLSKKVESFAVTERQ-LTLEVERMRLEHGIK 423
Cdd:COG4913 685 DDLAALEEQLEELEAELEELEEELDELKGE---IGRLEKELEQAEEELDELQDRLEAAEDLARLeLRALLEERFAAALGD 761
|
170 180 190
....*....|....*....|....*....|....*...
gi 578808689 424 RRDRSPSR-LDTFLKGIEEERDYYKKELERLQHIIQRR 460
Cdd:COG4913 762 AVERELREnLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
313-968 |
5.75e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 47.20 E-value: 5.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 313 EKLCQELTEIDQLAQQLERHKEeVLETADKELGEAKDLEETMAKLQLELnlcQKEKERLSDELLVKSDLETVVHQLEQEK 392
Cdd:PRK01156 152 KKILDEILEINSLERNYDKLKD-VIDMLRAEISNIDYLEEKLKSSNLEL---ENIKKQIADDEKSHSITLKEIERLSIEY 227
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 393 QRLSKKVESFAVTERQLtleverMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHIIQrrscSTSYSAREks 472
Cdd:PRK01156 228 NNAMDDYNNLKSALNEL------SSLEDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIIN----DPVYKNRN-- 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 473 sifrtpEKGDYNSEIHQITRERDELQRMLERFEKYmEDIQSNVKLLTAERDKlsvlYNEAQEELSALRKEstqttaphnI 552
Cdd:PRK01156 296 ------YINDYFKYKNDIENKKQILSNIDAEINKY-HAIIKKLSVLQKDYND----YIKKKSRYDDLNNQ---------I 355
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 553 VSLMEKEkelalSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLEN 632
Cdd:PRK01156 356 LELEGYE-----MDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQ 430
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 633 KLKVQAQKFSHVAGD----SSHQKTEVNSLRIVNEQLQRSVDDYQHRLSikrgelesaqaqikILEEKIDELNLKMTSQD 708
Cdd:PRK01156 431 RIRALRENLDELSRNmemlNGQSVCPVCGTTLGEEKSNHIINHYNEKKS--------------RLEEKIREIEIEVKDID 496
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 709 EEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLK-ETLVNRDREINSLRRQ 787
Cdd:PRK01156 497 EKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKlEDLDSKRTSWLNALAV 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 788 LDAAHKELDEvGRSREIafkeNRRLQDDLATMarenQEISLELeaavqekEEMKSRVHKYITEVSRWESLMAAKEKENQD 867
Cdd:PRK01156 577 ISLIDIETNR-SRSNEI----KKQLNDLESRL----QEIEIGF-------PDDKSYIDKSIREIENEANNLNNKYNEIQE 640
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 868 LLDRFQMLHNRAEDWEVKAHQAEG---ESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSR 944
Cdd:PRK01156 641 NKILIEKLRGKIDNYKKQIAEIDSiipDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIND 720
|
650 660
....*....|....*....|....
gi 578808689 945 LEEELRHQEDEKATVlNDLSSLRE 968
Cdd:PRK01156 721 INETLESMKKIKKAI-GDLKRLRE 743
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
558-783 |
6.22e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 6.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 558 KEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQ 637
Cdd:COG4942 23 AEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 638 AQKFSHVAGDSSHQKTEVNSLRIVNeqlQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKT 717
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLS---PEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 578808689 718 IGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDREINS 783
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
615-833 |
9.62e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 9.62e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 615 ELKSKVLIMKETIESLEnKLKVQAQKFSHVAGDSSHQKTEVNSLRIvnEQLQRSVDDYQHRLSIKRGELESAQAQIKILE 694
Cdd:COG4913 239 RAHEALEDAREQIELLE-PIRELAERYAAARERLAELEYLRAALRL--WFAQRRLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 695 EKIDELnlkmTSQDEEAHVMKKTIGVIDKEKdfLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETL 774
Cdd:COG4913 316 ARLDAL----REELDELEAQIRGNGGDRLEQ--LEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEA 389
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 578808689 775 vnrDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAA 833
Cdd:COG4913 390 ---AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLAL 445
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
523-1102 |
1.69e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.83 E-value: 1.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 523 DKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVslfgKSELEKTIEHL 602
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 603 TCVNHQLESEKYELKSKVLIMKETIESLEnKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLqrsvDDYQHRLSIKRGE 682
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIE-ELKKEIEELEEKVKELKELKEKAEEYIKLSEFY----EEYLDELREIEKR 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 683 LESAQAQIKILEEKIDELNlkmtSQDEEAHVMKKTIGVIDKEKDFLQETVdEKTEKIANLQENLANKEKAVA-----QMK 757
Cdd:PRK03918 316 LSRLEEEINGIEERIKELE----EKEERLEELKKKLKELEKRLEELEERH-ELYEEAKAKKEELERLKKRLTgltpeKLE 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 758 IMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDD-----LATMARENQEISLELEA 832
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEhrkelLEEYTAELKRIEKELKE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 833 AVQEKEEMKSRVHKYITEVSRWESLMAAKEkenqdLLDRFQMLHNRAEDWEVKAHQAEGEsssvrlELLSIDTERRHLRE 912
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKESELIKLKE-----LAEQLKELEEKLKKYNLEELEKKAE------EYEKLKEKLIKLKG 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 913 RVELLEKEIQEhinahhayesqISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKdimTQQLNsknlEFE 992
Cdd:PRK03918 540 EIKSLKKELEK-----------LEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEER---LKELE----PFY 601
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 993 RVVVELENVKSESDLLKKQLSNERHTVKNLESLLAtNRDKEFHShLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLR 1072
Cdd:PRK03918 602 NEYLELKDAEKELEREEKELKKLEEELDKAFEELA-ETEKRLEE-LRKELEELEKKYSEEEYEELREEYLELSRELAGLR 679
|
570 580 590
....*....|....*....|....*....|...
gi 578808689 1073 AKVAQLQTDYDALKRQI---STERYERERAIQE 1102
Cdd:PRK03918 680 AELEELEKRREEIKKTLeklKEELEEREKAKKE 712
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
187-1014 |
1.72e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 187 VPQPDDPYIADLLQVADNRIQELQQ---EVHQLQEKLAM-MESGVRDYskQIELREREIERLSVAlDGGRSPDVLSLESR 262
Cdd:pfam15921 68 IAYPGKEHIERVLEEYSHQVKDLQRrlnESNELHEKQKFyLRQSVIDL--QTKLQEMQMERDAMA-DIRRRESQSQEDLR 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 263 NK---TNEKLIAHLNIQVDFLQQANKDLEKrIRELMETKETVTSEVVN-LSNKNEKLCQELTEIDQLAQQLERHkeevLE 338
Cdd:pfam15921 145 NQlqnTVHELEAAKCLKEDMLEDSNTQIEQ-LRKMMLSHEGVLQEIRSiLVDFEEASGKKIYEHDSMSTMHFRS----LG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 339 TADKELgeAKDLEETMAKLQLELNLCQKEKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRL 418
Cdd:pfam15921 220 SAISKI--LRELDTEISYLKGRIFPVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 419 EhgikrrdrspSRLDTFLKGIEEERDYYKKELERLQHIIQRRSCSTSYSAREKSSIFRTPEKGDY--NSEIHQITRERDE 496
Cdd:pfam15921 298 Q----------SQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVlaNSELTEARTERDQ 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 497 LQR----MLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEE---LSALRKE-STQTTAPHNIVSLMEKEKELALSDLR 568
Cdd:pfam15921 368 FSQesgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNsitIDHLRRElDDRNMEVQRLEALLKAMKSECQGQME 447
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 569 RIMAEKEALREKLEHIEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVqaqkfshvagdS 648
Cdd:pfam15921 448 RQMAAIQGKNESLEKVSSLT----AQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERA-----------I 512
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 649 SHQKTEVNSLRivnEQLQRSVDDYQHrlsikrgeLESAQAQIKILEEKIDELNLKMTSQDeeahvmkKTIGVIDKEKDFL 728
Cdd:pfam15921 513 EATNAEITKLR---SRVDLKLQELQH--------LKNEGDHLRNVQTECEALKLQMAEKD-------KVIEILRQQIENM 574
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 729 QETVDEKTEKIANLQENLANKEKAVAQMKIMISEcessVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKE 808
Cdd:pfam15921 575 TQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQE----FKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKD 650
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 809 NRRLQDDLATMARENQEislELEAAVQEKEEMKSRVHKyitevsrweslmaaKEKENQDLLDRFQMlhnraedwEVKAHQ 888
Cdd:pfam15921 651 IKQERDQLLNEVKTSRN---ELNSLSEDYEVLKRNFRN--------------KSEEMETTTNKLKM--------QLKSAQ 705
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 889 AEGESSsvRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATvlndlsslre 968
Cdd:pfam15921 706 SELEQT--RNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNK---------- 773
|
810 820 830 840
....*....|....*....|....*....|....*....|....*.
gi 578808689 969 lcikldsgkdiMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSN 1014
Cdd:pfam15921 774 -----------LSQELSTVATEKNKMAGELEVLRSQERRLKEKVAN 808
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
685-871 |
1.95e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.21 E-value: 1.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 685 SAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISE-- 762
Cdd:COG3883 13 FADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGEra 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 763 --------CESSVNQLKE-----TLVNRdreINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLE 829
Cdd:COG3883 93 ralyrsggSVSYLDVLLGsesfsDFLDR---LSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 578808689 830 LEAAVQEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDR 871
Cdd:COG3883 170 KAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAA 211
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
290-843 |
1.96e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 1.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 290 RIRELMETKETVTSEVVNLSNKNEKLcqeLTEIDQLAQQLERHKEEVLETADKELGEAKDLEETMAKLQLELNLCQKEKE 369
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEEL---EAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 370 RLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEHgIKRRDRSPSRLDTFLKGIEEERDYYKKE 449
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAEL-AEAEEALLEAEAELAEAEEELEELAEEL 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 450 LERLQHIIQRRSCSTSYSAREKSS----IFRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKL 525
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALlerlERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAEL 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 526 SVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRiMAEKEALREKLEHIEEVSLFGKsELEKTIEHLTCV 605
Cdd:COG1196 469 LEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA-ALLLAGLRGLAGAVAVLIGVEA-AYEAALEAALAA 546
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 606 NHQLESEKYElkskvLIMKETIESLENKLKVQAQkFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELES 685
Cdd:COG1196 547 ALQNIVVEDD-----EVAAAAIEYLKAAKAGRAT-FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 686 AQAQIKILEEKIDELNLKMTSQDEEAHVmkkTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECES 765
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLRE---VTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 578808689 766 SVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEMKSR 843
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
240-975 |
2.15e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 45.60 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 240 EIERLSVALDGGRSPDVLSLESRNKTNEKLIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVV-----NLSNKNEK 314
Cdd:pfam12128 237 MKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRdelngELSAADAA 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 315 LCQELTEIDQLAQQLERHKEEVLETADKELgeakdleETMAKLQLELNLCQKEKERlsdellvksdLETVVHQLEQEKQR 394
Cdd:pfam12128 317 VAKDRSELEALEDQHGAFLDADIETAAADQ-------EQLPSWQSELENLEERLKA----------LTGKHQDVTAKYNR 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 395 LSKKVESfavterQLTLEVERMrlehgikRRDRSPSRlDTFLKGIEEERDYYKKELERLQHiiQRRSCSTSYSAREKSSI 474
Cdd:pfam12128 380 RRSKIKE------QNNRDIAGI-------KDKLAKIR-EARDRQLAVAEDDLQALESELRE--QLEAGKLEFNEEEYRLK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 475 FRTPE-KGDYNS------EIHQITRERDELQRMLERFE---KYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKEST 544
Cdd:pfam12128 444 SRLGElKLRLNQatatpeLLLQLENFDERIERAREEQEaanAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALD 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 545 Q-----TTAPHNIVSLMEKEKELALSDLRRIMAEKEALREKL-------EHIEEVSLFGKSELEKTIEHLTCVNHQlese 612
Cdd:pfam12128 524 ElelqlFPQAGTLLHFLRKEAPDWEQSIGKVISPELLHRTDLdpevwdgSVGGELNLYGVKLDLKRIDVPEWAASE---- 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 613 kYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQlqrsVDDYQHRLSikrGELESAQAQI-K 691
Cdd:pfam12128 600 -EELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETFARTALKN----ARLDLRRLF---DEKQSEKDKKnK 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 692 ILEEKIDELNLKMTSQDEEAHVMKKtigvidKEKDFLQETVDEK----TEKIANLQENLANKEKAVAQMKIMISECESSV 767
Cdd:pfam12128 672 ALAERKDSANERLNSLEAQLKQLDK------KHQAWLEEQKEQKrearTEKQAYWQVVEGALDAQLALLKAAIAARRSGA 745
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 768 ------------NQLK------ETLVNRDREINSLRRQLDAAHKELDEVGR----SREIAFKENRRLQDDLATMARENQE 825
Cdd:pfam12128 746 kaelkaletwykRDLAslgvdpDVIAKLKREIRTLERKIERIAVRRQEVLRyfdwYQETWLQRRPRLATQLSNIERAISE 825
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 826 ISLELEAavqEKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKahQAEGESSSVRLELLSIDT 905
Cdd:pfam12128 826 LQQQLAR---LIADTKLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATLKEDANSE--QAQGSIGERLAQLEDLKL 900
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 906 ERRHLRERVELLEKEIQEHINAHHAyesqiSSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDS 975
Cdd:pfam12128 901 KRDYLSESVKKYVEHFKNVIADHSG-----SGLAETWESLREEDHYQNDKGIRLLDYRKLVPYLEQWFDV 965
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
482-1104 |
2.25e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.49 E-value: 2.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 482 DYNSEIHQITRERDELQRMLERFEKYME----DIQSNVKLLTAERDKLSVLY---NEAQEEL-SALRKESTQTTAPHNIV 553
Cdd:pfam15921 82 EYSHQVKDLQRRLNESNELHEKQKFYLRqsviDLQTKLQEMQMERDAMADIRrreSQSQEDLrNQLQNTVHELEAAKCLK 161
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 554 SLMEKEKELALSDLRRIMAEKEALREKLEHIeeVSLFGKSELEKTIEHLTCVNHQLESekyelkskvliMKETIESLENK 633
Cdd:pfam15921 162 EDMLEDSNTQIEQLRKMMLSHEGVLQEIRSI--LVDFEEASGKKIYEHDSMSTMHFRS-----------LGSAISKILRE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 634 LKVQaqkFSHVAGdsshqktevnSLRIVNEQLQRSVDDYQHRLsikrgELESAQAQIKIlEEKIDELNLKMTSQDEEAHV 713
Cdd:pfam15921 229 LDTE---ISYLKG----------RIFPVEDQLEALKSESQNKI-----ELLLQQHQDRI-EQLISEHEVEITGLTEKASS 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 714 MKKTIGVIDKEKDFLQETVDEKTekianlqenlankekavAQMKIMISECESSVNQLKETLVNRDR----EINSLRRQLD 789
Cdd:pfam15921 290 ARSQANSIQSQLEIIQEQARNQN-----------------SMYMRQLSDLESTVSQLRSELREAKRmyedKIEELEKQLV 352
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 790 AAHKELDEVGRSREIAFKENRRLQDDL----ATMARENQEISLELEaavQEKEEMKSRVHKYIT-------------EVS 852
Cdd:pfam15921 353 LANSELTEARTERDQFSQESGNLDDQLqkllADLHKREKELSLEKE---QNKRLWDRDTGNSITidhlrrelddrnmEVQ 429
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 853 RWESLMAAKEKENQDLLDR-FQMLHNRAEDWE-VKAHQAEGESSSVRL-----ELLSIDTERRHLRERVELLEKEIQEHI 925
Cdd:pfam15921 430 RLEALLKAMKSECQGQMERqMAAIQGKNESLEkVSSLTAQLESTKEMLrkvveELTAKKMTLESSERTVSDLTASLQEKE 509
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 926 NAHHAYESQISSMAKAMSRLEEELRH---QEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVK 1002
Cdd:pfam15921 510 RAIEATNAEITKLRSRVDLKLQELQHlknEGDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQ 589
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 1003 SESDLLKKQLSNERHTVKNLESLlatnRDKEFHSHLTSHEKDTEIQLLKEKLT------LSESKLTSQSRENTM-----L 1071
Cdd:pfam15921 590 VEKAQLEKEINDRRLELQEFKIL----KDKKDAKIRELEARVSDLELEKVKLVnagserLRAVKDIKQERDQLLnevktS 665
|
650 660 670
....*....|....*....|....*....|...
gi 578808689 1072 RAKVAQLQTDYDALKRQISTERYERERAIQEMR 1104
Cdd:pfam15921 666 RNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK 698
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
475-744 |
4.85e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.15 E-value: 4.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 475 FRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLL-TAERDKLSVLYNEAQEELSALRKEstqttaphnIV 553
Cdd:PRK05771 33 IEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKkKVSVKSLEELIKDVEEELEKIEKE---------IK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 554 SLMEKEKELAlSDLRRIMAEKEALrEKLEHIE-EVSLFGKSELEKTIEHLtcVNHQLESEKYELKSKVLImkETIESLEN 632
Cdd:PRK05771 104 ELEEEISELE-NEIKELEQEIERL-EPWGNFDlDLSLLLGFKYVSVFVGT--VPEDKLEELKLESDVENV--EYISTDKG 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 633 K-------LKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRsvddYQHRLSIKRGELESAQAQIKILEEKIDELNL--- 702
Cdd:PRK05771 178 YvyvvvvvLKELSDEVEEELKKLGFERLELEEEGTPSELIRE----IKEELEEIEKERESLLEELKELAKKYLEELLaly 253
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 578808689 703 -KMTSQDEEAHVMKKTIG----------VIDKEKDFLQETVDEKTEKIANLQE 744
Cdd:PRK05771 254 eYLEIELERAEALSKFLKtdktfaiegwVPEDRVKKLKELIDKATGGSAYVEF 306
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
658-1107 |
4.87e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.44 E-value: 4.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 658 LRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILE------------------EKIDELNLKMTSQDEEAHVMKKTIG 719
Cdd:pfam12128 292 LRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEdqhgafldadietaaadqEQLPSWQSELENLEERLKALTGKHQ 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 720 VIDKEKDFLQETVDEK-TEKIANLQENLAN-KEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKEL-- 795
Cdd:pfam12128 372 DVTAKYNRRRSKIKEQnNRDIAGIKDKLAKiREARDRQLAVAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELkl 451
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 796 -------------------DEVGRSREI---AFKENRRLQDDLATM--ARENQEISL--------ELEAAVQEKEEM--- 840
Cdd:pfam12128 452 rlnqatatpelllqlenfdERIERAREEqeaANAEVERLQSELRQArkRRDQASEALrqasrrleERQSALDELELQlfp 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 841 --KSRVHKYITEVSRWESLMAakekenqDLLDRfQMLHNRAEDWEVKAHQAEGESS--SVRLELLSIDTERRH-----LR 911
Cdd:pfam12128 532 qaGTLLHFLRKEAPDWEQSIG-------KVISP-ELLHRTDLDPEVWDGSVGGELNlyGVKLDLKRIDVPEWAaseeeLR 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 912 ERVELLEKEIQEHINAHHAYESQissMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSknlEF 991
Cdd:pfam12128 604 ERLDKAEEALQSAREKQAAAEEQ---LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDKKNKALAE---RK 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 992 ERVVVELENVKSESDLLKKQLSNERHTVKNlESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTML 1071
Cdd:pfam12128 678 DSANERLNSLEAQLKQLDKKHQAWLEEQKE-QKREARTEKQAYWQVVEGALDAQLALLKAAIAARRSGAKAELKALETWY 756
|
490 500 510
....*....|....*....|....*....|....*.
gi 578808689 1072 RAKVAQLQTDYDALKRqISTERYERERAIQEMRRHG 1107
Cdd:pfam12128 757 KRDLASLGVDPDVIAK-LKREIRTLERKIERIAVRR 791
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
682-900 |
5.46e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.60 E-value: 5.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 682 ELESAQAQIKILEEKIDELNLKMTSQdeeahvmKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMIS 761
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAAL-------KKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 762 ECESSVNQLKETLVNRDREINSLRRQLDAAH----KELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEK 837
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLGRQPPLALllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578808689 838 EEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLEL 900
Cdd:COG4942 174 AELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEA 236
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
199-367 |
6.13e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.67 E-value: 6.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALD--------GGRSPDVLS--LESRNktnek 268
Cdd:COG3883 39 LDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGeraralyrSGGSVSYLDvlLGSES----- 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 269 lIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAK 348
Cdd:COG3883 114 -FSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEA 192
|
170
....*....|....*....
gi 578808689 349 DLEETMAKLQLELNLCQKE 367
Cdd:COG3883 193 AAEAQLAELEAELAAAEAA 211
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
281-1006 |
6.94e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.88 E-value: 6.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 281 QQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLER--HKEEVLETADKELGEAKDLEETMAKLQ 358
Cdd:TIGR00606 206 QMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEieHNLSKIMKLDNEIKALKSRKKQMEKDN 285
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 359 LELNLCQKEKERLSDELL--VKSDLETVVHQLEQEKQRLSKKVESFAVTERQLTLEVERMRLEHGIKRRDRSPSRLDTFL 436
Cdd:TIGR00606 286 SELELKMEKVFQGTDEQLndLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRA 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 437 KGIEEERDYYKKELERLQHiiqrrscsTSYSAREKSSiFRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVK 516
Cdd:TIGR00606 366 RDSLIQSLATRLELDGFER--------GPFSERQIKN-FHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKK 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 517 LLTAERDKLSVLYNEAQEELSALRKESTQTTAPHNivSLMEKEKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELE 596
Cdd:TIGR00606 437 GLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD--RILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 597 KTIEHLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAG------------DSSHQKT-EVNSLRIVNE 663
Cdd:TIGR00606 515 RKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSllgyfpnkkqleDWLHSKSkEINQTRDRLA 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 664 QLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELnlkMTSQDEEAHV--MKKTIGVIDKEKDFLQetvdEKTEKIAN 741
Cdd:TIGR00606 595 KLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDV---CGSQDEESDLerLKEEIEKSSKQRAMLA----GATAVYSQ 667
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 742 LQENLANKEKAVAQMKIMISECESSVNQLKETLVNRDReinSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMAR 821
Cdd:TIGR00606 668 FITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLR---LAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEK 744
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 822 ENQEISLELEAAVQEKEEMKSRVHKYITEVSRweslMAAKEKENQDLLDR---FQMLHNRAEDWEVKAHQAEGESSS--- 895
Cdd:TIGR00606 745 EIPELRNKLQKVNRDIQRLKNDIEEQETLLGT----IMPEEESAKVCLTDvtiMERFQMELKDVERKIAQQAAKLQGsdl 820
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 896 ------VRLELLSIDTERRHLRERVELLEKEIQEH----------INAHHAYESQISSMAKAMSRLEEELRHQEDEKATV 959
Cdd:TIGR00606 821 drtvqqVNQEKQEKQHELDTVVSKIELNRKLIQDQqeqiqhlkskTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSL 900
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 578808689 960 LNDLSSLRELCIKLDSGKDIMTQQ----LNSKNLEFERVVVELENVKSESD 1006
Cdd:TIGR00606 901 IREIKDAKEQDSPLETFLEKDQQEkeelISSKETSNKKAQDKVNDIKEKVK 951
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
482-1105 |
7.15e-04 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 482 DYNSEIHQITRERDELQRM---LERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKEStqttapHNIVSLMEK 558
Cdd:PRK01156 177 MLRAEISNIDYLEEKLKSSnleLENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSAL------NELSSLEDM 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 559 EKELAlSDLRRIMAEKEALREKLEHIEEVSlfgkSELEKTIEHLTCVNHQLESEKYELKSKVLIMKETIESlenkLKVQA 638
Cdd:PRK01156 251 KNRYE-SEIKTAESDLSMELEKNNYYKELE----ERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSN----IDAEI 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 639 QKFshvagDSSHQKTEV-NSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEekidelNLKMTSQDEEAHvmkkt 717
Cdd:PRK01156 322 NKY-----HAIIKKLSVlQKDYNDYIKKKSRYDDLNNQILELEGYEMDYNSYLKSIE------SLKKKIEEYSKN----- 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 718 igvIDKEKDFLQETVdekteKIANLQENLANKEKAVAQMKIM-ISECESSVNQLKETLVNRDREINSLRRQLD------- 789
Cdd:PRK01156 386 ---IERMSAFISEIL-----KIQEIDPDAIKKELNEINVKLQdISSKVSSLNQRIRALRENLDELSRNMEMLNgqsvcpv 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 790 -AAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQEKEEM-KSRVHKYITEVSRWESLMAAKEKENQD 867
Cdd:PRK01156 458 cGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLeSEEINKSINEYNKIESARADLEDIKIK 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 868 LldrfqmlhNRAEDWEVKAHQAEGESSSVRLELLSidterrhlrervellekeiqehinahHAYESQISSMAKAMSRLEE 947
Cdd:PRK01156 538 I--------NELKDKHDKYEEIKNRYKSLKLEDLD--------------------------SKRTSWLNALAVISLIDIE 583
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 948 ELRHQEDEKATVLNDL-SSLRELCIKLDSGKDIMTQQLNsknlEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLL 1026
Cdd:PRK01156 584 TNRSRSNEIKKQLNDLeSRLQEIEIGFPDDKSYIDKSIR----EIENEANNLNNKYNEIQENKILIEKLRGKIDNYKKQI 659
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 578808689 1027 ATNRDKEfhshLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQISteryERERAIQEMRR 1105
Cdd:PRK01156 660 AEIDSII----PDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRIN----DINETLESMKK 730
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
573-1102 |
7.70e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 7.70e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 573 EKEALR-EKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVLIMK--ETIESLENKLKVQAQKFSHVAGDSS 649
Cdd:PTZ00121 1239 AEEAKKaEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKadEAKKAEEKKKADEAKKKAEEAKKAD 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 650 HQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIdKEKDFLQ 729
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEK-KKADEAK 1397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 730 ETVDEKTEKIANLQENLANKEKA-----VAQMKIMISECESSVNQLKETlvNRDREINSLRRQLDAAHKELDEVGRSREI 804
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKAdeakkKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 805 AFK-ENRRLQDDLATMARENQEISLELEAAVQEK----------EEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQ 873
Cdd:PTZ00121 1476 KKKaEEAKKADEAKKKAEEAKKKADEAKKAAEAKkkadeakkaeEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 874 MLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQE 953
Cdd:PTZ00121 1556 ELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKV 1635
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 954 DEKATVLNDLSSLRELCIKLDSGKDIMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATN-RDK 1032
Cdd:PTZ00121 1636 EQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEaEEK 1715
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578808689 1033 EFHSHLTSHEKDTEIQLLKEKLTLSESKLTS-QSRENTMLRAKVAQLQTDYDALKRQIsteRYERERAIQE 1102
Cdd:PTZ00121 1716 KKAEELKKAEEENKIKAEEAKKEAEEDKKKAeEAKKDEEEKKKIAHLKKEEEKKAEEI---RKEKEAVIEE 1783
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
199-352 |
8.63e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 8.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 199 LQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSpDVLSLESRNK---------TNEKL 269
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL-EIEEVEARIKkyeeqlgnvRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 270 IAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTE-IDQLAQQLERHKEEVLETADKELGEAK 348
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEkKAELDEELAELEAELEELEAEREELAA 170
|
....
gi 578808689 349 DLEE 352
Cdd:COG1579 171 KIPP 174
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
521-1030 |
9.38e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 43.27 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 521 ERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLmekeKELALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKTIE 600
Cdd:pfam10174 203 QKEKENIHLREELHRRNQLQPDPAKTKALQTVIEM----KDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQME 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 601 ----HLTCVNHQLESEKYELKSKvlimKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRL 676
Cdd:pfam10174 279 vyksHSKFMKNKIDQLKQELSKK----ESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 677 SIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQEnlankekAVAQM 756
Cdd:pfam10174 355 EEKESFLNKKTKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKE-------RVKSL 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 757 KIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKE-LDEVGRSReiafKENRRLQDDLATMARENQEISLELEAAVQ 835
Cdd:pfam10174 428 QTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRErLEELESLK----KENKDLKEKVSALQPELTEKESSLIDLKE 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 836 EKEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEgesssvRLELLSIDTERRhlRERVE 915
Cdd:pfam10174 504 HASSLASSGLKKDSKLKSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPEIND------RIRLLEQEVARY--KEESG 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 916 LLEKEIQEHINAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSLRELCIK------LDSGKDIMTQQLNSKNL 989
Cdd:pfam10174 576 KAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQMKEQNKKVANIKHGQQEMKKkgaqllEEARRREDNLADNSQQL 655
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 578808689 990 EFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATNR 1030
Cdd:pfam10174 656 QLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLTNLR 696
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
651-836 |
1.50e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 42.12 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 651 QKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEE-----------AHVMKKTIG 719
Cdd:COG3883 21 KQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEieerreelgerARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 720 VIDKE---------KDFL-------------QETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLKETLVNR 777
Cdd:COG3883 101 SVSYLdvllgsesfSDFLdrlsalskiadadADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 578808689 778 DREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEISLELEAAVQE 836
Cdd:COG3883 181 EALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 239
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
287-880 |
1.64e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 42.58 E-value: 1.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 287 LEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLerhkeevletaDKELGEAKDLEETMAKLQLELNLCQK 366
Cdd:PRK01156 164 LERNYDKLKDVIDMLRAEISNIDYLEEKLKSSNLELENIKKQI-----------ADDEKSHSITLKEIERLSIEYNNAMD 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 367 EKERLSDELLVKSDLETVVHQLEQEKQRLSKKVESFAVTERQLT-LEVERMRLEHgikrrdrspsrlDTFLKGIEEERDY 445
Cdd:PRK01156 233 DYNNLKSALNELSSLEDMKNRYESEIKTAESDLSMELEKNNYYKeLEERHMKIIN------------DPVYKNRNYINDY 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 446 --YKKELERLQHIIQR-RSCSTSYSAREKSSIFRTPEKGDY---NSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLT 519
Cdd:PRK01156 301 fkYKNDIENKKQILSNiDAEINKYHAIIKKLSVLQKDYNDYikkKSRYDDLNNQILELEGYEMDYNSYLKSIESLKKKIE 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 520 AERDKLSVLYNEAQEELSALRKESTQTTAPHN--IVSLMEKEkelalSDLRRIMAEKEALREKLEHIEE----------V 587
Cdd:PRK01156 381 EYSKNIERMSAFISEILKIQEIDPDAIKKELNeiNVKLQDIS-----SKVSSLNQRIRALRENLDELSRnmemlngqsvC 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 588 SLFGKSELEKTIEHLtcVNHQLEsEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAG-DSSHQKTEVNSLRIVNEQLQ 666
Cdd:PRK01156 456 PVCGTTLGEEKSNHI--INHYNE-KKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESeEINKSINEYNKIESARADLE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 667 RSVDDyQHRLSIKRGELESAQAQIKILeeKIDELNLKMTSQDEEAHVmkktIGVIDKEKdfLQETVDEKTEKIANLQENL 746
Cdd:PRK01156 533 DIKIK-INELKDKHDKYEEIKNRYKSL--KLEDLDSKRTSWLNALAV----ISLIDIET--NRSRSNEIKKQLNDLESRL 603
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 747 ANKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVgrSREIAFKENRrlQDDLATMARENQEI 826
Cdd:PRK01156 604 QEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLRGKIDNY--KKQIAEIDSI--IPDLKEITSRINDI 679
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 578808689 827 SLELeaavqekEEMKSRVHKYITEVSRWESLMAAKEKENQDLLDRFQMLHNRAE 880
Cdd:PRK01156 680 EDNL-------KKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLE 726
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
616-829 |
1.88e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 1.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 616 LKSKVLIMKETIESLENKLkvqaqkfSHVAGDSSHQKTEVNSLRIVNEQlqrSVDDYQHRLSIKRGELESAQAQIKILEE 695
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKI-------DHIQQQIKTYNKNIEEQRKKNGE---NIARKQNKYDELVEEAKTIKAEIEELTD 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 696 KIdeLNLKMTSQDEEAHV---------MKKTIGVIDKEKDFLQE---------TVDEKTEKIANLQENLANKEKAVAQMK 757
Cdd:PHA02562 242 EL--LNLVMDIEDPSAALnklntaaakIKSKIEQFQKVIKMYEKggvcptctqQISEGPDRITKIKDKLKELQHSLEKLD 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 758 IMISECESSVNQ----------LKETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRLQDDLATMARENQEIS 827
Cdd:PHA02562 320 TAIDELEEIMDEfneqskklleLKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELV 399
|
..
gi 578808689 828 LE 829
Cdd:PHA02562 400 KE 401
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
325-457 |
1.89e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.15 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 325 LAQQLERHKEEVLETADKELGEAK--------DLEETMAKLQLELNLCQKEKERLSDELlvksdletvvHQLEQEKQRLS 396
Cdd:COG2433 378 IEEALEELIEKELPEEEPEAEREKeheereltEEEEEIRRLEEQVERLEAEVEELEAEL----------EEKDERIERLE 447
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 578808689 397 KKVESFAVTERqltlevERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYYKKELERLQHII 457
Cdd:COG2433 448 RELSEARSEER------REIRKDREISRLDREIERLERELEEERERIEELKRKLERLKELW 502
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
859-1120 |
3.81e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.90 E-value: 3.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 859 AAKEKENQDLLDRFQMLHNRAEDWEVKAHQAEGESSSVRLELLSIDTERRHLRERVELLEKEIQEHinahhayESQISSM 938
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL-------EAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 939 AKAMSRLEEELRHQEDEKATVLNDLSSLrelcikldSGKDIMTQQLNSKNleFERVVVELENVKSESDLLKKQLSNERHT 1018
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYRL--------GRQPPLALLLSPED--FLDAVRRLQYLKYLAPARREQAEELRAD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 1019 VKNLESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLTLSESKLTSQSRENTMLRAKVAQLQTDYDALKRQIstERYERER 1098
Cdd:COG4942 159 LAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALI--ARLEAEA 236
|
250 260
....*....|....*....|..
gi 578808689 1099 AIQEMRRHGLATPPLSSTLRSP 1120
Cdd:COG4942 237 AAAAERTPAAGFAALKGKLPWP 258
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
693-812 |
5.26e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.00 E-value: 5.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 693 LEEKIDELNLKMtsQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQMKIMISECESSVNQLK- 771
Cdd:COG2433 378 IEEALEELIEKE--LPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARs 455
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 578808689 772 --ETLVNRDREINSLRRQLDAAHKELDEVGRSREIAFKENRRL 812
Cdd:COG2433 456 eeRREIRKDREISRLDREIERLERELEEERERIEELKRKLERL 498
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
195-505 |
5.60e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 5.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 195 IADLLQVADNRIQELQQEVHQLQEKLammesgvRDYSKQIELREREIerlsvaldggrspDVLSLESRnktneklIAHLN 274
Cdd:COG4913 622 LEEELAEAEERLEALEAELDALQERR-------EALQRLAEYSWDEI-------------DVASAERE-------IAELE 674
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 275 IQVDFLQQANKDLekriRELMETKETVTSEVVNLSNKNEKLcqeLTEIDQLAQQLERHKEEvLETADKELGEAKDLEETM 354
Cdd:COG4913 675 AELERLDASSDDL----AALEEQLEELEAELEELEEELDEL---KGEIGRLEKELEQAEEE-LDELQDRLEAAEDLARLE 746
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 355 AKLQLElnlcqkekERLsDELLVKSDLETVVHQLEQEKQRLSKKVesfavteRQLTLEVERMRLEHgiKRRDRSPSR-LD 433
Cdd:COG4913 747 LRALLE--------ERF-AAALGDAVERELRENLEERIDALRARL-------NRAEEELERAMRAF--NREWPAETAdLD 808
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578808689 434 TFLKGIEEERDYYKK----ELERLQHIIQRrscstsysAREKSSI-FRTPEKGDYNSEIHQITRERDELQRMLERFE 505
Cdd:COG4913 809 ADLESLPEYLALLDRleedGLPEYEERFKE--------LLNENSIeFVADLLSKLRRAIREIKERIDPLNDSLKRIP 877
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
204-542 |
7.75e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 40.39 E-value: 7.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 204 NRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSP------DVLSLESRNKTNEKLIAHLNIQV 277
Cdd:TIGR04523 335 KIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEiknlesQINDLESKIQNQEKLNQQKDEQI 414
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 278 DFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVletadkeLGEAKDLEETMAKL 357
Cdd:TIGR04523 415 KKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVL-------SRSINKIKQNLEQK 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 358 QLELNLCQKEKERLSDEllvksdletvVHQLEQEKQRLSKKVESFAVTERQltLEVERMRLEHGIKRRDRSPSRLDTFLK 437
Cdd:TIGR04523 488 QKELKSKEKELKKLNEE----------KKELEEKVKDLTKKISSLKEKIEK--LESEKKEKESKISDLEDELNKDDFELK 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 438 --GIEEERDYYKKELERLQHiiqrrscstSYSAREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNV 515
Cdd:TIGR04523 556 keNLEKEIDEKNKEIEELKQ---------TQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKEN 626
|
330 340
....*....|....*....|....*..
gi 578808689 516 KLLTAERDKLSVLYNEAQEELSALRKE 542
Cdd:TIGR04523 627 EKLSSIIKNIKSKKNKLKQEVKQIKET 653
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
88-413 |
8.83e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.44 E-value: 8.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 88 ELMKLREHSDQHVKELKTSLKKCARETADLKFLNNQYAHKLKLLEKESKAKNERIQQLQEKNLHAVVQTPGGKKRSIafR 167
Cdd:TIGR02169 727 QLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKL--E 804
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 168 RQRMQIDEPVPPSEVSSYPVPQpddpyiadLLQVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVA 247
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLTL--------EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAA 876
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 248 ldggrspdVLSLESRnktneklIAHLNIQVDFLQQANKDLEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQ 327
Cdd:TIGR02169 877 --------LRDLESR-------LGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKG 941
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 328 QLERHKEEVLETADKELgEAKDLEETMAKLQLELNLCQKEKERLSDELlvkSDLETVVHQLEQEKQRLSKKVESFAVTER 407
Cdd:TIGR02169 942 EDEEIPEEELSLEDVQA-ELQRVEEEIRALEPVNMLAIQEYEEVLKRL---DELKEKRAKLEEERKAILERIEEYEKKKR 1017
|
....*.
gi 578808689 408 QLTLEV 413
Cdd:TIGR02169 1018 EVFMEA 1023
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
468-813 |
8.84e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.88 E-value: 8.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 468 AREKSSIFRTPEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLSVLYNEAQEELSALRKESTQTT 547
Cdd:pfam07888 49 AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 548 A-----PHNIVSL----MEKEKEL---------ALSDLRRIMAEKEALREKLEHIEEVSLFGKSELEKtiehltcvnhqL 609
Cdd:pfam07888 129 ArirelEEDIKTLtqrvLERETELermkerakkAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQE-----------L 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 610 ESEKYELKSKVLIMKETIESLENKLKVQAQKFShvagDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKRGELESAQAQ 689
Cdd:pfam07888 198 RNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEA----ENEALLEELRSLQERLNASERKVEGLGEELSSMAAQRDRTQAE 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 690 IKILEEKIDELNLKMTsqdEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLANKEKAVAQmkimisecESSVNQ 769
Cdd:pfam07888 274 LHQARLQAAQLTLQLA---DASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEERLQE--------ERMERE 342
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 578808689 770 LKETLVNRDREINslRRQLDAAHKELDEVGRSREIAFKENRRLQ 813
Cdd:pfam07888 343 KLEVELGREKDCN--RVQLSESRRELQELKASLRVAQKEKEQLQ 384
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
402-789 |
9.03e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 40.27 E-value: 9.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 402 FAVTERQLTLEVERMRlehgikRRDRSPSRLDTFLKGIEEERdyyKKELERLQHIIQRRSCSTSYSAREKSSIFR--TPE 479
Cdd:PLN02939 23 FYLPSRRRLAVSCRAR------RRGFSSQQKKKRGKNIAPKQ---RSSNSKLQSNTDENGQLENTSLRTVMELPQksTSS 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 480 KGDYNSEIHQITRERDELQrmLERFEKYMEDIQ-SNVKLltaerdklsvlyneaqEELSALRKestqtTAPHNIVsLMEK 558
Cdd:PLN02939 94 DDDHNRASMQRDEAIAAID--NEQQTNSKDGEQlSDFQL----------------EDLVGMIQ-----NAEKNIL-LLNQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 559 EKELALSDLRRIMAEKEALREKLEHIE----------EVSLFGKSELEKTIEHLTCVNHQLESEKYELKSKVL------- 621
Cdd:PLN02939 150 ARLQALEDLEKILTEKEALQGKINILEmrlsetdariKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHslskeld 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 622 IMKETIESLENKLKVQAQKFSHVAgdsshqKTEVNSLRIVNEQ--LQRSVDDYQHRLSIKRGE-LESAQAQIKILEEKID 698
Cdd:PLN02939 230 VLKEENMLLKDDIQFLKAELIEVA------ETEERVFKLEKERslLDASLRELESKFIVAQEDvSKLSPLQYDCWWEKVE 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 699 ELNL---KMTSQDEEAHVMKKTIGVIDKEKDFLQETVDE------KTEKIANLQENLANKE----KAVAQMKIMISECES 765
Cdd:PLN02939 304 NLQDlldRATNQVEKAALVLDQNQDLRDKVDKLEASLKEanvskfSSYKVELLQQKLKLLEerlqASDHEIHSYIQLYQE 383
|
410 420
....*....|....*....|....
gi 578808689 766 SVNQLKETLVNRDREinSLRRQLD 789
Cdd:PLN02939 384 SIKEFQDTLSKLKEE--SKKRSLE 405
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
287-1095 |
9.36e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 9.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 287 LEKRIRELMETKETVTSEVVNLSNKNEKLCQELTEIDQLAQQLERHKEEVLETADKELGEAKDLEETMAKLQLELNLCQK 366
Cdd:pfam01576 66 LAARKQELEEILHELESRLEEEEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLED 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 367 EKERLSDEllvKSDLETVVHQLEQEKQRLSKKVESfaVTERQLTLEVERMRLEHGIKRRDRSPSRLDTFLKGIEEERDYY 446
Cdd:pfam01576 146 QNSKLSKE---RKLLEERISEFTSNLAEEEEKAKS--LSKLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDL 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 447 KKELERLQhiIQRRSCSTSYSAREKssifrtpEKGDYNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTAERDKLS 526
Cdd:pfam01576 221 QEQIAELQ--AQIAELRAQLAKKEE-------ELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAE 291
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 527 VLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALSDLRRIMAEK----------------EALREKLEHIEEVSLF 590
Cdd:pfam01576 292 KQRRDLGEELEALKTELEDTLDTTAAQQELRSKREQEVTELKKALEEEtrsheaqlqemrqkhtQALEELTEQLEQAKRN 371
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 591 gKSELEKTiehltcvNHQLESEKYELKSKVLIM---KETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRivnEQLQR 667
Cdd:pfam01576 372 -KANLEKA-------KQALESENAELQAELRTLqqaKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKL---SKLQS 440
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 668 SVDDYQHRLSIKRGELESAQAQIKILEEKIDELNLKMTSQDEEAHVMKKTIGVIDKEKDFLQETVDEKTEKIANLQENLA 747
Cdd:pfam01576 441 ELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLS 520
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 748 NKEKAVAQMKIMISECESSVNQLKETLVNRDREINSLRRQLDAAHKELDEVGRSReiafkenRRLQ---DDLATMARENQ 824
Cdd:pfam01576 521 TLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTK-------NRLQqelDDLLVDLDHQR 593
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 825 EISLELEAAVQEKEEM----KSRVHKYITEVSRWESlmAAKEKENqdlldRFQMLHNRAEDWEVKAHQAEGESSSVRLEL 900
Cdd:pfam01576 594 QLVSNLEKKQKKFDQMlaeeKAISARYAEERDRAEA--EAREKET-----RALSLARALEEALEAKEELERTNKQLRAEM 666
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 901 LSIDTERRHLRERVELLEKeiqehinAHHAYESQISSMAKAMSRLEEELRHQEDEKATVLNDLSSL-----RELCIKLDS 975
Cdd:pfam01576 667 EDLVSSKDDVGKNVHELER-------SKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVNMQALkaqfeRDLQARDEQ 739
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 976 GKDiMTQQLNSKNLEFERVVVELENVKSESDLLKKQLSNERHTVKNLESLLATNRDKEFHSHLTSHEKDTEIQLLKEKLT 1055
Cdd:pfam01576 740 GEE-KRRQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREEAVKQLKKLQAQMKDLQRELEEAR 818
|
810 820 830 840
....*....|....*....|....*....|....*....|....*..
gi 578808689 1056 LSESKLTSQSREN----TMLRAKVAQLQTDYDA---LKRQISTERYE 1095
Cdd:pfam01576 819 ASRDEILAQSKESekklKNLEAELLQLQEDLAAserARRQAQQERDE 865
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
441-686 |
9.45e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.75 E-value: 9.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 441 EERDYYKKELERLQHIIQRRSCSTSYSAREKSSIfrtpekgdyNSEIHQITRERDELQRMLERFEKYMEDIQSNVKLLTA 520
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKAL---------LKQLAALERRIAALARRIRALEQELAALEAELAELEK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 521 ERDKLSVLYNEAQEELSALRKESTQTTAPHNIVSLMEKEKELALsdLRRIMAEKEALREKLEHIEEvslfgkseLEKTIE 600
Cdd:COG4942 91 EIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDA--VRRLQYLKYLAPARREQAEE--------LRADLA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 601 HLTCVNHQLESEKYELKSKVLIMKETIESLENKLKVQAQKFSHVAGDSSHQKTEVNSLRIVNEQLQRSVDDYQHRLSIKR 680
Cdd:COG4942 161 ELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
....*.
gi 578808689 681 GELESA 686
Cdd:COG4942 241 ERTPAA 246
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
200-299 |
9.88e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.84 E-value: 9.88e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578808689 200 QVADNRIQELQQEVHQLQEKLAMMESGVRDYSKQIELREREIERLSVALDGGRSPDVLSLESRNKTN--EKLIAHLNIQV 277
Cdd:COG2433 402 EHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERREIRKDREISrlDREIERLEREL 481
|
90 100
....*....|....*....|..
gi 578808689 278 DFLQQANKDLEKRIRELMETKE 299
Cdd:COG2433 482 EEERERIEELKRKLERLKELWK 503
|
|
| |
