|
Name |
Accession |
Description |
Interval |
E-value |
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
526-1526 |
0e+00 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 1210.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 526 GKHSMRTRRSRGSgqMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLK 605
Cdd:pfam03154 1 GKHSMRTRRSRGS--MSTLRSGRKKQTASPDGRASPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSKKIKEEAPSPLK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 606 STKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDS 685
Cdd:pfam03154 79 SAKRQREKGASDTEEPERATAKKSKTQEISRPNSPSEGEGESSDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 686 DSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPaaHTHIQQAPT 765
Cdd:pfam03154 159 DSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAP--HTLIQQTPT 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 766 LHPPRLPSPHPPLQPMT--APPSQSSAQPHPQPSLHSQGPPGPHSLQTGP-LLQHPGPPQPFGLPSQPSQGQGPLGPSPA 842
Cdd:pfam03154 237 LHPQRLPSPHPPLQPMTqpPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPsHMQHPVPPQPFPLTPQSSQSQVPPGPSPA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 843 AAHP-HSTIQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNANLPPPPAL 921
Cdd:pfam03154 317 APGQsQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNLPPPPAL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 922 KPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTT-GLHQVPSQSPFPQHPFVPGGPPPIT 1000
Cdd:pfam03154 397 KPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTsGLHQVPSQSPFPQHPFVPGGPPPIT 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1001 PPSCPPTSTPPAGPSSSSQPPcsAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHAS 1080
Cdd:pfam03154 477 PPSGPPTSTSSAMPGIQPPSS--ASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVVNTPSHAS 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1081 QSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAqK 1160
Cdd:pfam03154 555 QSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEALEKAKREAEQKAREEKEREKEKEKEREREREREREAERAA-K 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1161 ASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAY 1240
Cdd:pfam03154 634 ASSSSHEGRMGDPQLAGPAHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFFVPLNPTDPLLAY 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1241 HMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHSALTIPPAAGPHPFASF 1320
Cdd:pfam03154 714 HMPGLYNVDPAIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHGALTLPPMAGPHPFASF 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1321 HPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQG 1400
Cdd:pfam03154 794 HPGLNPLERERLALAGPQLRPEMSYPDRLAAERLHAERMASLTNDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQG 873
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1401 SAGPVHPLVDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFaepvlrlaGTPYPRDLPGAIPPPMSAAHQLQA 1480
Cdd:pfam03154 874 SGGPVHPLVDPLAAGPHLARFPYPPGAIPNPLLGQPPHEHEMLRHPVF--------GTPYPRDLPGGLPPPMSAAHQLQA 945
|
970 980 990 1000
....*....|....*....|....*....|....*....|....*.
gi 568931827 1481 MHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQ 1526
Cdd:pfam03154 946 MHAQSAELQRLAMEQQWLHGHPHMHGGHLPGQEDYYSRLKKESDKQ 991
|
|
| BAH_MTA |
cd04709 |
BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The ... |
102-265 |
2.94e-88 |
|
BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240060 Cd Length: 164 Bit Score: 283.90 E-value: 2.94e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 102 DVVYRPGDCVYIESRrPNTPYFICSIQDFKLSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNEND-SGRELVITDPVI 180
Cdd:cd04709 1 ANMYRVGDYVYFESS-PNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEkSDDLTPKQRHQL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 181 KNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPF 260
Cdd:cd04709 80 RHRELFLSRQVETLPATHIRGKCSVTLLNDTESARSYLAREDTFFYSLVYDPEQKTLLADQGEIRVGPSYQAKLPDLQPF 159
|
....*
gi 568931827 261 PSPDG 265
Cdd:cd04709 160 PSPDG 164
|
|
| SANT_MTA3_like |
cd11661 |
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family ... |
353-398 |
1.29e-22 |
|
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis.
Pssm-ID: 212559 [Multi-domain] Cd Length: 46 Bit Score: 91.91 E-value: 1.29e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 568931827 353 CWTEDEVKRFVKGLRQYGKNFFRIRKELLPSKETGELITFYYYWKK 398
Cdd:cd11661 1 EWSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYYMWKK 46
|
|
| BAH |
smart00439 |
Bromo adjacent homology domain; |
105-239 |
6.74e-16 |
|
Bromo adjacent homology domain;
Pssm-ID: 214664 [Multi-domain] Cd Length: 121 Bit Score: 75.41 E-value: 6.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 105 YRPGDCVYIESRRPNTPYFICSIQDFKLSKRDHLLMNVK--WYYRQSEVPdsvyqHLVQDRHNENdsgrelvitdpvikn 182
Cdd:smart00439 2 ISVGDFVLVEPDDADEPYYIGRIEEIFETKKNSESKMVRvrWFYRPEETV-----LEKAALFDKN--------------- 61
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568931827 183 rELFISDYVDTYHAAALRGKCNISHFSDIF--AAREFKARVDSFFYILGYNPETRRLNS 239
Cdd:smart00439 62 -EVFLSDEYDTVPLSDIIGKCNVLYKSDYPglRPEGSIGEPDVFFCESAYDPEKGSFKK 119
|
|
| BAH |
pfam01426 |
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been ... |
103-239 |
9.38e-16 |
|
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.
Pssm-ID: 460207 Cd Length: 120 Bit Score: 75.04 E-value: 9.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 103 VVYRPGDCVYIESRRPNTPYFICSIQDFKLSKRDHLLM-NVKWYYRQSEVPdsvyqHLVQDRHNEndsgrelvitdpvik 181
Cdd:pfam01426 1 ETYSVGDFVLVEPDDADEPYYVARIEELFEDTKNGKKMvRVQWFYRPEETV-----HRAGKAFNK--------------- 60
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568931827 182 nRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFK-ARVDSFFYILGYNPETRRLNS 239
Cdd:pfam01426 61 -DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPYKiKEPDDFFCELLYDPKTKSFKK 118
|
|
| ZnF_GATA |
smart00401 |
zinc finger binding to DNA consensus sequence [AT]GATA[AG]; |
461-510 |
2.65e-15 |
|
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
Pssm-ID: 214648 [Multi-domain] Cd Length: 52 Bit Score: 71.30 E-value: 2.65e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 568931827 461 KGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL-PPIEKPVDPP 510
Cdd:smart00401 2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLkRPLSLKKDGI 52
|
|
| ZnF_GATA |
cd00202 |
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ... |
464-518 |
3.20e-15 |
|
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Pssm-ID: 238123 [Multi-domain] Cd Length: 54 Bit Score: 71.25 E-value: 3.20e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 568931827 464 ACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPvDPPPFMFKPVK 518
Cdd:cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKR-KKDQIKRRNRK 54
|
|
| ELM2 |
pfam01448 |
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown ... |
244-294 |
1.62e-12 |
|
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex. The domain is usually found to the N terminus of a myb-like DNA binding domain pfam00249. ELM2 is also found associated with an ARID DNA binding domain pfam01388 in Swiss:O82364. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Pssm-ID: 460214 Cd Length: 53 Bit Score: 63.40 E-value: 1.62e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 568931827 244 IRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMP--GVSDCDLLMYLRAARS 294
Cdd:pfam01448 1 IRVGPRYQAEIPELLPPSEEEDRYEEEDELLVWDPnhNLPDRKLDEYLVVARS 53
|
|
| GATA |
pfam00320 |
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ... |
465-500 |
1.22e-11 |
|
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Pssm-ID: 425605 [Multi-domain] Cd Length: 36 Bit Score: 60.41 E-value: 1.22e-11
10 20 30
....*....|....*....|....*....|....*.
gi 568931827 465 CRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL 500
Cdd:pfam00320 1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK 36
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
536-985 |
2.96e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 65.73 E-value: 2.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 536 RGSGQMSTLRSGRKKQPTSPDGRASPINE--DIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREK 613
Cdd:PHA03247 2576 RPSEPAVTSRARRPDAPPQSARPRAPVDDrgDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD 2655
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 614 VASDTEDTDRITSKKTKTqeiSRPNSPSEGEGESSDSRSVNDEGSS-----DPKDIDQDNRSTSPSIPSPQDNESDSDSS 688
Cdd:PHA03247 2656 PAPGRVSRPRRARRLGRA---AQASSPPQRPRRRAARPTVGSLTSLadpppPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 689 AQQQMLQAQPPAlqaPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPP---------NQTQSTVAPAAHTH 759
Cdd:PHA03247 2733 PALPAAPAPPAV---PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPavaslsesrESLPSPWDPADPPA 2809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 760 IQQAPTLHPPRLPSPHPPLQPMTAPpsQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGP 839
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSA--QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 840 SPAAAHPHSTIQLPASQSALQPQQPPREQPLPPAPLAMPhikppptTPIPQLPAPQAHKHPPhlsgPSPFSLNANLPPPP 919
Cdd:PHA03247 2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP-------PQPQPPPPPPPRPQPP----LAPTTDPAGAGEPS 2956
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568931827 920 ALKPLSSLSTHHPPSAHPPPLQLmPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSP 985
Cdd:PHA03247 2957 GAVPQPWLGALVPGRVAVPRFRV-PQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPP 3021
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
503-689 |
3.67e-09 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 61.46 E-value: 3.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 503 IEKPVDPP----PFMFKPVKEEDDGL----SGKHSMRTRRSRGSGQMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSP 574
Cdd:NF033609 539 IDKPVVPEqpdePGEIEPIPEDSDSDpgsdSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDS 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 575 SAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE-DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRS 652
Cdd:NF033609 619 ASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDS 698
|
170 180 190
....*....|....*....|....*....|....*..
gi 568931827 653 VNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 689
Cdd:NF033609 699 DSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 734
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
560-720 |
1.83e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 49.52 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 560 SPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE-DTDRITSKKTKTQEISRPN 638
Cdd:NF033609 716 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSD 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 639 SPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPS-IPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPP 716
Cdd:NF033609 796 SDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVVPP 875
|
....
gi 568931827 717 GTPQ 720
Cdd:NF033609 876 NSPK 879
|
|
| SANT |
smart00717 |
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
354-399 |
6.52e-05 |
|
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 41.83 E-value: 6.52e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 568931827 354 WTEDEVKRFVKGLRQYG-KNFFRIRKElLPSKETGELITFYYYWKKT 399
Cdd:smart00717 4 WTEEEDELLIELVKKYGkNNWEKIAKE-LPGRTAEQCRERWRNLLKP 49
|
|
| Myb_DNA-binding |
pfam00249 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
354-397 |
1.86e-04 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 40.56 E-value: 1.86e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 568931827 354 WTEDEVKRFVKGLRQYGKNFFRIrKELLPSKETGELITFYYYWK 397
Cdd:pfam00249 4 WTPEEDELLLEAVEKLGNRWKKI-AKLLPGRTDNQCKNRWQNYL 46
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
538-689 |
2.61e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 45.67 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 538 SGQMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASD 617
Cdd:NF033609 628 SDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 707
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568931827 618 TE-DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 689
Cdd:NF033609 708 SDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 780
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
538-689 |
3.66e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 45.29 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 538 SGQMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASD 617
Cdd:NF033609 652 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 731
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568931827 618 TeDTDRITSKKTKTQEISRPNSPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 689
Cdd:NF033609 732 S-DSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 802
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
610-742 |
6.07e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.65 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 610 QREKVASDTEDTDRITSKKTKTQ-EISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDN---------RSTSPSIPSPQ 679
Cdd:TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEaEQGKDAYPVAQQKLIYSGKILSDDKTVKEYKIKEKDfvvvmvskpKTGTGKVAPPA 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568931827 680 DNESDSDSSAqqqmlqAQPPALQAPSGAASAPSTAPPGTP---QLPTQGPTPSATAVPPQGSPATS 742
Cdd:TIGR00601 89 ATPTSAPTPT------PSPPASPASGMSAAPASAVEEKSPseeSATATAPESPSTSVPSSGSDAAS 148
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
526-1526 |
0e+00 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 1210.76 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 526 GKHSMRTRRSRGSgqMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLK 605
Cdd:pfam03154 1 GKHSMRTRRSRGS--MSTLRSGRKKQTASPDGRASPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSKKIKEEAPSPLK 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 606 STKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDS 685
Cdd:pfam03154 79 SAKRQREKGASDTEEPERATAKKSKTQEISRPNSPSEGEGESSDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDS 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 686 DSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPaaHTHIQQAPT 765
Cdd:pfam03154 159 DSSAQQQILQTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAP--HTLIQQTPT 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 766 LHPPRLPSPHPPLQPMT--APPSQSSAQPHPQPSLHSQGPPGPHSLQTGP-LLQHPGPPQPFGLPSQPSQGQGPLGPSPA 842
Cdd:pfam03154 237 LHPQRLPSPHPPLQPMTqpPPPSQVSPQPLPQPSLHGQMPPMPHSLQTGPsHMQHPVPPQPFPLTPQSSQSQVPPGPSPA 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 843 AAHP-HSTIQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNANLPPPPAL 921
Cdd:pfam03154 317 APGQsQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPQLPNPQSHKHPPHLSGPSPFQMNSNLPPPPAL 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 922 KPLSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTT-GLHQVPSQSPFPQHPFVPGGPPPIT 1000
Cdd:pfam03154 397 KPLSSLSTHHPPSAHPPPLQLMPQSQQLPPPPAQPPVLTQSQSLPPPAASHPPTsGLHQVPSQSPFPQHPFVPGGPPPIT 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1001 PPSCPPTSTPPAGPSSSSQPPcsAAVSSGGSVPGAPSCPLPAVQIKEEALDEAEEPESPPPPPRSPSPEPTVVDTPSHAS 1080
Cdd:pfam03154 477 PPSGPPTSTSSAMPGIQPPSS--ASVSSSGPVPAAVSCPLPPVQIKEEALDEAEEPESPPPPPRSPSPEPTVVNTPSHAS 554
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1081 QSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEAIEKAKREAEQKAREEREREKEKEKEREREREREREAERAAqK 1160
Cdd:pfam03154 555 QSARFYKHLDRGYNSCARTDLYFMPLAGSKLAKKREEALEKAKREAEQKAREEKEREKEKEKEREREREREREAERAA-K 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1161 ASSSAHEGRLSDPQLSGPGHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFYMPLNPTDPLLAY 1240
Cdd:pfam03154 634 ASSSSHEGRMGDPQLAGPAHMRPSFEPPPTTIAAVPPYIGPDTPALRTLSEYARPHVMSPTNRNHPFFVPLNPTDPLLAY 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1241 HMPGLYNVDPTIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHSALTIPPAAGPHPFASF 1320
Cdd:pfam03154 714 HMPGLYNVDPAIRERELREREIREREIRERELRERMKPGFEVKPPELDPLHPATNPMEHFARHGALTLPPMAGPHPFASF 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1321 HPGLNPLERERLALAGPQLRPEMSYPDRLAAERIHAERMASLTSDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQG 1400
Cdd:pfam03154 794 HPGLNPLERERLALAGPQLRPEMSYPDRLAAERLHAERMASLTNDPLARLQMFNVTPHHHQHSHIHSHLHLHQQDPLHQG 873
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 1401 SAGPVHPLVDPLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFaepvlrlaGTPYPRDLPGAIPPPMSAAHQLQA 1480
Cdd:pfam03154 874 SGGPVHPLVDPLAAGPHLARFPYPPGAIPNPLLGQPPHEHEMLRHPVF--------GTPYPRDLPGGLPPPMSAAHQLQA 945
|
970 980 990 1000
....*....|....*....|....*....|....*....|....*.
gi 568931827 1481 MHAQSAELQRLAMEQQWLHGHPHMHGGHLPSQEDYYSRLKKEGDKQ 1526
Cdd:pfam03154 946 MHAQSAELQRLAMEQQWLHGHPHMHGGHLPGQEDYYSRLKKESDKQ 991
|
|
| BAH_MTA |
cd04709 |
BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The ... |
102-265 |
2.94e-88 |
|
BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240060 Cd Length: 164 Bit Score: 283.90 E-value: 2.94e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 102 DVVYRPGDCVYIESRrPNTPYFICSIQDFKLSKRDHLLMNVKWYYRQSEVPDSVYQHLVQDRHNEND-SGRELVITDPVI 180
Cdd:cd04709 1 ANMYRVGDYVYFESS-PNNPYLIRRIEELNKTARGHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEkSDDLTPKQRHQL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 181 KNRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETRRLNSTQGEIRVGPSHQAKLPDLQPF 260
Cdd:cd04709 80 RHRELFLSRQVETLPATHIRGKCSVTLLNDTESARSYLAREDTFFYSLVYDPEQKTLLADQGEIRVGPSYQAKLPDLQPF 159
|
....*
gi 568931827 261 PSPDG 265
Cdd:cd04709 160 PSPDG 164
|
|
| SANT_MTA3_like |
cd11661 |
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family ... |
353-398 |
1.29e-22 |
|
Myb-Like Dna-Binding Domain of MTA3 and related proteins; Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis.
Pssm-ID: 212559 [Multi-domain] Cd Length: 46 Bit Score: 91.91 E-value: 1.29e-22
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 568931827 353 CWTEDEVKRFVKGLRQYGKNFFRIRKELLPSKETGELITFYYYWKK 398
Cdd:cd11661 1 EWSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGELVEFYYMWKK 46
|
|
| BAH |
smart00439 |
Bromo adjacent homology domain; |
105-239 |
6.74e-16 |
|
Bromo adjacent homology domain;
Pssm-ID: 214664 [Multi-domain] Cd Length: 121 Bit Score: 75.41 E-value: 6.74e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 105 YRPGDCVYIESRRPNTPYFICSIQDFKLSKRDHLLMNVK--WYYRQSEVPdsvyqHLVQDRHNENdsgrelvitdpvikn 182
Cdd:smart00439 2 ISVGDFVLVEPDDADEPYYIGRIEEIFETKKNSESKMVRvrWFYRPEETV-----LEKAALFDKN--------------- 61
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568931827 183 rELFISDYVDTYHAAALRGKCNISHFSDIF--AAREFKARVDSFFYILGYNPETRRLNS 239
Cdd:smart00439 62 -EVFLSDEYDTVPLSDIIGKCNVLYKSDYPglRPEGSIGEPDVFFCESAYDPEKGSFKK 119
|
|
| BAH |
pfam01426 |
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been ... |
103-239 |
9.38e-16 |
|
BAH domain; This domain has been called BAH (Bromo adjacent homology) domain and has also been called ELM1 and BAM (Bromo adjacent motif) domain. The function of this domain is unknown but may be involved in protein-protein interaction.
Pssm-ID: 460207 Cd Length: 120 Bit Score: 75.04 E-value: 9.38e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 103 VVYRPGDCVYIESRRPNTPYFICSIQDFKLSKRDHLLM-NVKWYYRQSEVPdsvyqHLVQDRHNEndsgrelvitdpvik 181
Cdd:pfam01426 1 ETYSVGDFVLVEPDDADEPYYVARIEELFEDTKNGKKMvRVQWFYRPEETV-----HRAGKAFNK--------------- 60
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568931827 182 nRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFK-ARVDSFFYILGYNPETRRLNS 239
Cdd:pfam01426 61 -DELFLSDEEDDVPLSAIIGKCSVLHKSDLESLDPYKiKEPDDFFCELLYDPKTKSFKK 118
|
|
| ZnF_GATA |
smart00401 |
zinc finger binding to DNA consensus sequence [AT]GATA[AG]; |
461-510 |
2.65e-15 |
|
zinc finger binding to DNA consensus sequence [AT]GATA[AG];
Pssm-ID: 214648 [Multi-domain] Cd Length: 52 Bit Score: 71.30 E-value: 2.65e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 568931827 461 KGYACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL-PPIEKPVDPP 510
Cdd:smart00401 2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLkRPLSLKKDGI 52
|
|
| ZnF_GATA |
cd00202 |
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] ... |
464-518 |
3.20e-15 |
|
Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Pssm-ID: 238123 [Multi-domain] Cd Length: 54 Bit Score: 71.25 E-value: 3.20e-15
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 568931827 464 ACRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGELPPIEKPvDPPPFMFKPVK 518
Cdd:cd00202 1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGVMRPLSKR-KKDQIKRRNRK 54
|
|
| BAH |
cd04370 |
BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). ... |
105-235 |
1.24e-14 |
|
BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Pssm-ID: 239835 [Multi-domain] Cd Length: 123 Bit Score: 71.65 E-value: 1.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 105 YRPGDCVYIE--SRRPNTPYFICSIQDFKLSKRDHLLMNVKWYYRQSEVPDSVYQHlvqdrHNEndsgrelvitdpvikn 182
Cdd:cd04370 4 YEVGDSVYVEpdDSIKSDPPYIARIEELWEDTNGSKQVKVRWFYRPEETPKGLSPF-----ALR---------------- 62
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568931827 183 RELFISDYVDTYHAAALRGKCNISHFSDIF--AAREFKARVDSFFYILGYNPETR 235
Cdd:cd04370 63 RELFLSDHLDEIPVESIIGKCKVLFVSEFEglKQRPNKIDTDDFFCRLAYDPTTK 117
|
|
| ELM2 |
pfam01448 |
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown ... |
244-294 |
1.62e-12 |
|
ELM2 domain; The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex. The domain is usually found to the N terminus of a myb-like DNA binding domain pfam00249. ELM2 is also found associated with an ARID DNA binding domain pfam01388 in Swiss:O82364. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Pssm-ID: 460214 Cd Length: 53 Bit Score: 63.40 E-value: 1.62e-12
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 568931827 244 IRVGPSHQAKLPDLQPFPSPDGDTVTQHEELVWMP--GVSDCDLLMYLRAARS 294
Cdd:pfam01448 1 IRVGPRYQAEIPELLPPSEEEDRYEEEDELLVWDPnhNLPDRKLDEYLVVARS 53
|
|
| GATA |
pfam00320 |
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This ... |
465-500 |
1.22e-11 |
|
GATA zinc finger; This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
Pssm-ID: 425605 [Multi-domain] Cd Length: 36 Bit Score: 60.41 E-value: 1.22e-11
10 20 30
....*....|....*....|....*....|....*.
gi 568931827 465 CRHCFTTTSKDWHHGGRENILLCTDCRIHFKKYGEL 500
Cdd:pfam00320 1 CSNCGTTKTPLWRRGPNGNRTLCNACGLYYKKKGLK 36
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
692-858 |
1.35e-10 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 66.21 E-value: 1.35e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 692 QM-LQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQgspatsQPPNQTQSTVAPAAHTHIQQAPtlhppr 770
Cdd:pfam09770 202 AMrAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQ------QQPQQPQQHPGQGHPVTILQRP------ 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 771 lpsphpplQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQtgpLLQHP-------------GPPQPFGLPSQPSQGQGPL 837
Cdd:pfam09770 270 --------QSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQ---ILQNPnrlsaarvgypqnPQPGVQPAPAHQAHRQQGS 338
|
170 180
....*....|....*....|...
gi 568931827 838 --GPSPAAAHPHSTIQLPASQSA 858
Cdd:pfam09770 339 fgRQAPIITHPQQLAQLSEEEKA 361
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
536-985 |
2.96e-10 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 65.73 E-value: 2.96e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 536 RGSGQMSTLRSGRKKQPTSPDGRASPINE--DIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREK 613
Cdd:PHA03247 2576 RPSEPAVTSRARRPDAPPQSARPRAPVDDrgDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD 2655
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 614 VASDTEDTDRITSKKTKTqeiSRPNSPSEGEGESSDSRSVNDEGSS-----DPKDIDQDNRSTSPSIPSPQDNESDSDSS 688
Cdd:PHA03247 2656 PAPGRVSRPRRARRLGRA---AQASSPPQRPRRRAARPTVGSLTSLadpppPPPTPEPAPHALVSATPLPPGPAAARQAS 2732
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 689 AQQQMLQAQPPAlqaPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPP---------NQTQSTVAPAAHTH 759
Cdd:PHA03247 2733 PALPAAPAPPAV---PAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPavaslsesrESLPSPWDPADPPA 2809
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 760 IQQAPTLHPPRLPSPHPPLQPMTAPpsQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGP 839
Cdd:PHA03247 2810 AVLAPAAALPPAASPAGPLPPPTSA--QPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLA 2887
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 840 SPAAAHPHSTIQLPASQSALQPQQPPREQPLPPAPLAMPhikppptTPIPQLPAPQAHKHPPhlsgPSPFSLNANLPPPP 919
Cdd:PHA03247 2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP-------PQPQPPPPPPPRPQPP----LAPTTDPAGAGEPS 2956
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568931827 920 ALKPLSSLSTHHPPSAHPPPLQLmPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSP 985
Cdd:PHA03247 2957 GAVPQPWLGALVPGRVAVPRFRV-PQPAPSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPP 3021
|
|
| BAH_fungalPHD |
cd04710 |
BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. ... |
101-236 |
4.27e-10 |
|
BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240061 Cd Length: 135 Bit Score: 59.31 E-value: 4.27e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 101 DDVVYRPGDCVYIESRRPNTPYFICSIQDFkLSKRD-------------HLLMNVKWYYRQSEVpdsvyqhlvqDRHNEN 167
Cdd:cd04710 8 NGELLKVNDHIYMSSEPPGEPYYIGRIMEF-VPKHEfpsgiharvfpasYFQVRLNWYYRPRDI----------SRRVVA 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568931827 168 DSgrelvitdpviknRELFISDYVDTYHAAALRGKCNISHFSDIFAAREFKARVDSFFYILGYNPETRR 236
Cdd:cd04710 77 DS-------------RLLYASMHSDICPIGSVRGKCTVRHRDQIPDLEEYKKRPNHFYFDQLFDRYILR 132
|
|
| BAH_BAHCC1 |
cd04714 |
BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. ... |
104-234 |
2.16e-09 |
|
BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240065 Cd Length: 121 Bit Score: 56.64 E-value: 2.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 104 VYRPGDCVYIESR-RPNTPYfICSIQDFKLSKRDHLLMNVKWYYRqsevPDsvyqhlvqdrhnENDSGRElvitdPVIKN 182
Cdd:cd04714 3 IIRVGDCVLFKSPgRPSLPY-VARIESLWEDPEGNMVVRVKWYYR----PE------------ETKGGRK-----PNHGE 60
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 568931827 183 RELFISDYVDTYHAAALRGKCNISHFSD---IFAAREFKARVDSFFYILG-YNPET 234
Cdd:cd04714 61 KELFASDHQDENSVQTIEHKCYVLTFAEyerLARVKKKPQDGVDFYYCAGtYNPDT 116
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
503-689 |
3.67e-09 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 61.46 E-value: 3.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 503 IEKPVDPP----PFMFKPVKEEDDGL----SGKHSMRTRRSRGSGQMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSP 574
Cdd:NF033609 539 IDKPVVPEqpdePGEIEPIPEDSDSDpgsdSGSDSSNSDSGSDSGSDSTSDSGSDSASDSDSASDSDSASDSDSASDSDS 618
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 575 SAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE-DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRS 652
Cdd:NF033609 619 ASDSDSASDSDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDS 698
|
170 180 190
....*....|....*....|....*....|....*..
gi 568931827 653 VNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 689
Cdd:NF033609 699 DSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 734
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
624-990 |
1.77e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 56.49 E-value: 1.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 624 ITSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSAQQQMLQAQPPALQA 703
Cdd:PHA03247 2582 VTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPS-PAANEPDPHPPPTVPPPERPRDDPAPGR 2660
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 704 PSGAASAPSTAPPGTPQLPTQGPTPSAtAVPPQGSPATSQPPNQTQSTVAPAahthiqqaPTLHPPRLPsphpplqpmTA 783
Cdd:PHA03247 2661 VSRPRRARRLGRAAQASSPPQRPRRRA-ARPTVGSLTSLADPPPPPPTPEPA--------PHALVSATP---------LP 2722
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 784 PPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQSALQPQQ 863
Cdd:PHA03247 2723 PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPW 2802
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 864 PPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPSPFSLNA------------NLPPPPALKPLSSLSTHH 931
Cdd:PHA03247 2803 DPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLggsvapggdvrrRPPSRSPAAKPAAPARPP 2882
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 932 PPSAHPPPLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLHQVPSQSP-FPQHP 990
Cdd:PHA03247 2883 VRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPpRPQPP 2942
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
694-846 |
2.66e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 55.38 E-value: 2.66e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 694 LQAQPPALQAPSGAASAPSTAPPGTPQL-------PTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTL 766
Cdd:PRK07764 580 GDWQVEAVVGPAPGAAGGEGPPAPASSGppeeaarPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAV 659
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 767 HPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGP-PQPFGLPSQPSQGQGPLGPSPAAAH 845
Cdd:PRK07764 660 PDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQaDDPAAQPPQAAQGASAPSPAADDPV 739
|
.
gi 568931827 846 P 846
Cdd:PRK07764 740 P 740
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
676-846 |
2.90e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 55.38 E-value: 2.90e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 676 PSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPA 755
Cdd:PRK07764 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGA 676
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 756 AHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLH------SQGPPGPHSLQTGPLLQHPG-PPQPFGLPS 828
Cdd:PRK07764 677 APAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQppqaaqGASAPSPAADDPVPLPPEPDdPPDPAGAPA 756
|
170
....*....|....*...
gi 568931827 829 QPSQGQGPLGPSPAAAHP 846
Cdd:PRK07764 757 QPPPPPAPAPAAAPAAAP 774
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
668-1097 |
4.93e-07 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 54.94 E-value: 4.93e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 668 NRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSG------AASAPSTAPPGTPQLPTQGPTPSATAV-PPQGSPA 740
Cdd:PHA03247 2565 DRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDdrgdprGPAPPSPLPPDTHAPDPPPPSPSPAANePDPHPPP 2644
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 741 TSQPPNQTQSTVAPAA-----HTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHS---LQTG 812
Cdd:PHA03247 2645 TVPPPERPRDDPAPGRvsrprRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSatpLPPG 2724
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 813 PLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHStiqlPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLP 892
Cdd:PHA03247 2725 PAAARQASPALPAAPAPPAVPAGPATPGGPARPARP----PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 893 APQAHKHPPHLSGPSPFSLNANLPPPPALKPLSSLSTHHPPSAHPPPLQL--------------MPQSQPLPSSPAQPPG 958
Cdd:PHA03247 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLplggsvapggdvrrRPPSRSPAAKPAAPAR 2880
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 959 lTQSQSLPPPAASHPTTGLHQVPSQSPFPQHPfvPGGPPPITPPSCPPTSTPPAGPSSSSQPPCSAAVSSGGSVPGAPSC 1038
Cdd:PHA03247 2881 -PPVRRLARPAVSRSTESFALPPDQPERPPQP--QAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSG 2957
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 568931827 1039 PLPAVQikeeaLDEAEEPESPPPPPRSPSPEPTVvdtPSHASQSARFYKHLDRGYNSCA 1097
Cdd:PHA03247 2958 AVPQPW-----LGALVPGRVAVPRFRVPQPAPSR---EAPASSTPPLTGHSLSRVSSWA 3008
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
683-838 |
6.33e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.22 E-value: 6.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 683 SDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPAtsqPPNQTQSTVAPAAhthiQQ 762
Cdd:PRK07764 367 ASDDERGLLARLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPA---PAAAPQPAPAPAP----AP 439
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568931827 763 APTlhpPRLPSPHPPLQPMTAPPSQSSAQPHPQPslhsQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLG 838
Cdd:PRK07764 440 APP---SPAGNAPAGGAPSPPPAAAPSAQPAPAP----AAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADD 508
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
500-913 |
1.16e-06 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 53.79 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 500 LPPIEKPVDPPPFMFKPVKEEDDGLSGKHSMRTRRSRGSGQMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAAST 579
Cdd:PHA03247 2617 LPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLT 2696
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 580 SSNDSKAETVKKSAKKVKEEAASPL---KSTKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGESSDSRSVNDE 656
Cdd:PHA03247 2697 SLADPPPPPPTPEPAPHALVSATPLppgPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 657 GSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTA---PPGTPQLPTQGPTPSATAV 733
Cdd:PHA03247 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAqptAPPPPPGPPPPSLPLGGSV 2856
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 734 PPQGSPATSQPPNQTQSTVAPAAHTHIQQ--APTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPhSLQT 811
Cdd:PHA03247 2857 APGGDVRRRPPSRSPAAKPAAPARPPVRRlaRPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQP-PPPP 2935
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 812 GPLLQHPGPPQPFGLPSQPSQGQGP-----------------LGPSPAAA-------------HPHSTIQLPASQSALQP 861
Cdd:PHA03247 2936 PPRPQPPLAPTTDPAGAGEPSGAVPqpwlgalvpgrvavprfRVPQPAPSreapasstppltgHSLSRVSSWASSLALHE 3015
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 862 QQPP-----------------REQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLS------------GPSPFSLN 912
Cdd:PHA03247 3016 ETDPppvslkqtlwppddtedSDADSLFDSDSERSDLEALDPLPPEPHDPFAHEPDPATPeagarespssqfGPPPLSAN 3095
|
.
gi 568931827 913 A 913
Cdd:PHA03247 3096 A 3096
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
696-814 |
8.37e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.48 E-value: 8.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 696 AQPPAlqAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAhthiqqAPTLHPPRLPSPH 775
Cdd:PRK14951 382 ARPEA--AAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA------APAAVALAPAPPA 453
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 568931827 776 PPLQPMTAPPSQSSAQPH-PQPSLHSQGPPGPHSLQTGPL 814
Cdd:PRK14951 454 QAAPETVAIPVRVAPEPAvASAAPAPAAAPAAARLTPTEE 493
|
|
| PRK10263 |
PRK10263 |
DNA translocase FtsK; Provisional |
552-852 |
1.17e-05 |
|
DNA translocase FtsK; Provisional
Pssm-ID: 236669 [Multi-domain] Cd Length: 1355 Bit Score: 50.47 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 552 PTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKR----QREKVAS--DTEDTDRIT 625
Cdd:PRK10263 554 PVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRirvpTRRELASygIKLPSQRAA 633
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 626 SKKTKTQEISRPNSPSEGEGESSDSRSvNDE-----GSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPA 700
Cdd:PRK10263 634 EEKAREAQRNQYDSGDQYNDDEIDAMQ-QDElarqfAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYS 712
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 701 LQAPSGA--------------------ASAPSTAPPGTP-QLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTH 759
Cdd:PRK10263 713 GEQPAGAnpfslddfefspmkallddgPHEPLFTPIVEPvQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQ 792
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 760 IQQAPTLHPPRLPSPHPPLQPMTAPPS-QSSAQPHPQPSLHSQGP-PGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPL 837
Cdd:PRK10263 793 QPQQPVAPQPQYQQPQQPVAPQPQYQQpQQPVAPQPQYQQPQQPVaPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLL 872
|
330
....*....|....*
gi 568931827 838 GPSPAAAHPHSTIQL 852
Cdd:PRK10263 873 TPPPSEVEPVDTFAL 887
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
677-758 |
1.41e-05 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 48.87 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 677 SPQDNES---DSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVA 753
Cdd:PRK10856 155 SQNSGQSvplDTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGA 234
|
....*
gi 568931827 754 PAAHT 758
Cdd:PRK10856 235 APLPT 239
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
669-810 |
1.67e-05 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 49.65 E-value: 1.67e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 669 RSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTP-------SATAVPPQGSPAT 741
Cdd:pfam09770 204 RAQAKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVtilqrpqSPQPDPAQPSIQP 283
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568931827 742 SQPPNQTQSTVAPAAHTHIQQAPTLhpPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPP---GPHSLQ 810
Cdd:pfam09770 284 QAQQFHQQPPPVPVQPTQILQNPNR--LSAARVGYPQNPQPGVQPAPAHQAHRQQGSFGRQAPiitHPQQLA 353
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
560-720 |
1.83e-05 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 49.52 E-value: 1.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 560 SPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTE-DTDRITSKKTKTQEISRPN 638
Cdd:NF033609 716 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDsDSDSDSDSDSDSDSDSDSD 795
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 639 SPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPS-IPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPP 716
Cdd:NF033609 796 SDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSESDSNSDSESGSNNNVVPP 875
|
....
gi 568931827 717 GTPQ 720
Cdd:NF033609 876 NSPK 879
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
625-806 |
1.93e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 49.21 E-value: 1.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 625 TSKKTKTQEISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSA--QQQMLQAQPPALQ 702
Cdd:PRK07764 600 PPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDggDGWPAKAGGAAPA 679
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 703 APSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMT 782
Cdd:PRK07764 680 APPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP 759
|
170 180
....*....|....*....|....
gi 568931827 783 APPSQSSAQPHPQPSLHSQGPPGP 806
Cdd:PRK07764 760 PPPAPAPAAAPAAAPPPSPPSEEE 783
|
|
| PLN02967 |
PLN02967 |
kinase |
516-647 |
2.64e-05 |
|
kinase
Pssm-ID: 215521 [Multi-domain] Cd Length: 581 Bit Score: 48.89 E-value: 2.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 516 PVKEEDDGLSGKHSMRTRRSRgsgqmstlRSGRKKQPTSPDGRASPINEDIRssgrNSPSAASTSSNDSKAETVKKSA-- 593
Cdd:PLN02967 57 AVDEEPDENGAVSKKKPTRSV--------KRATKKTVVEISEPLEEGSELVV----NEDAALDKESKKTPRRTRRKAAaa 124
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568931827 594 -KKVKEEAASPLKSTKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEGES 647
Cdd:PLN02967 125 sSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEEL 179
|
|
| BAH_polybromo |
cd04717 |
BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human ... |
102-215 |
2.87e-05 |
|
BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240068 Cd Length: 121 Bit Score: 44.88 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 102 DVVYRPGDCVYIESRRPNTPYFICSIqdFKLSKRDH--LLMNVKWYYRQSEVPdsvyqHLVQDRHNENdsgrelvitdpv 179
Cdd:cd04717 1 GLQYRVGDCVYVANPEDPSKPIIFRI--ERLWKDEDgeKFFFGCWFYRPEETF-----HEPTRKFYKN------------ 61
|
90 100 110
....*....|....*....|....*....|....*.
gi 568931827 180 iknrELFISDYVDTYHAAALRGKCNISHFSDIFAAR 215
Cdd:cd04717 62 ----EVFKSPLYETVPVEEIVGKCAVMDVKDYIKGR 93
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
696-907 |
5.83e-05 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 47.95 E-value: 5.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 696 AQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPnqtqstvAPAAHTHIQQAPTLHPPrlpsph 775
Cdd:PRK12323 379 AAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSP-------APEALAAARQASARGPG------ 445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 776 pplqPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPllqhPGPPQPFGLPSQPSQGQGP---LGPSPAAAHPHSTIQL 852
Cdd:PRK12323 446 ----GAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA----PARAAPAAAPAPADDDPPPweeLPPEFASPAPAQPDAA 517
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568931827 853 PASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGPS 907
Cdd:PRK12323 518 PAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASG 572
|
|
| SANT |
smart00717 |
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains; |
354-399 |
6.52e-05 |
|
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
Pssm-ID: 197842 [Multi-domain] Cd Length: 49 Bit Score: 41.83 E-value: 6.52e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 568931827 354 WTEDEVKRFVKGLRQYG-KNFFRIRKElLPSKETGELITFYYYWKKT 399
Cdd:smart00717 4 WTEEEDELLIELVKKYGkNNWEKIAKE-LPGRTAEQCRERWRNLLKP 49
|
|
| SANT |
cd00167 |
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ... |
354-397 |
6.60e-05 |
|
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Pssm-ID: 238096 [Multi-domain] Cd Length: 45 Bit Score: 41.79 E-value: 6.60e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 568931827 354 WTEDEVKRFVKGLRQYG-KNFFRIRKElLPSKETGELITFYYYWK 397
Cdd:cd00167 2 WTEEEDELLLEAVKKYGkNNWEKIAKE-LPGRTPKQCRERWRNLL 45
|
|
| PRK10927 |
PRK10927 |
cell division protein FtsN; |
597-823 |
1.04e-04 |
|
cell division protein FtsN;
Pssm-ID: 236797 [Multi-domain] Cd Length: 319 Bit Score: 46.21 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 597 KEEAASPLKSTKRQREKVASDTEDTDR-ITSKKTKTQEISRPNSPSEGeGESSDSRSVNDEGSSDPKDIDQDNRSTSPSI 675
Cdd:PRK10927 58 KKEESETLQSQKVTGNGLPPKPEERWRyIKELESRQPGVRAPTEPSAG-GEVKTPEQLTPEQRQLLEQMQADMRQQPTQL 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 676 PSPQDNESDSDSsaQQQMLQAQPpalQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPatsQPPNQTQStvapa 755
Cdd:PRK10927 137 VEVPWNEQTPEQ--RQQTLQRQR---QAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQP---RQSKPAST----- 203
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568931827 756 ahthiqQAPtlhpprlpsphppLQPMTAPPSQSSAQPHPQpslhsqgppgphslQTGPLLQHPGPPQP 823
Cdd:PRK10927 204 ------QQP-------------YQDLLQTPAHTTAQSKPQ--------------QAAPVTRAADAPKP 238
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
651-756 |
1.07e-04 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 47.19 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 651 RSVNDEGSSDPK--DIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPgTPQLPTQGPTP 728
Cdd:PRK12270 17 QYLADPNSVDPSwrEFFADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPP-KPAAAAAAAAA 95
|
90 100 110
....*....|....*....|....*....|.
gi 568931827 729 SATAVPPQGSPATSQPPNQTQSTV---APAA 756
Cdd:PRK12270 96 PAAPPAAAAAAAPAAAAVEDEVTPlrgAAAA 126
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
495-807 |
1.21e-04 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 46.99 E-value: 1.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 495 KKYGELPPIEK---------PVDPPPFMFKPVKEEDDGLSGKHSMRTRRSRGSGQMSTLRSGRKKQPTSPDGRASpined 565
Cdd:PTZ00449 491 KSKKKLAPIEEedsdkhdepPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAK----- 565
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 566 irssgRNSPSAASTSSNDSKAETVKKSAKKVKEEaasplKSTKRQRekvaSDTEDTDRITSKKTKTQEI----SRPNSPS 641
Cdd:PTZ00449 566 -----EHKPSKIPTLSKKPEFPKDPKHPKDPEEP-----KKPKRPR----SAQRPTRPKSPKLPELLDIpkspKRPESPK 631
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 642 EGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIP-SPQDNES--DSDSSAQQQMLQAQPPALQAPSGAASAPSTAP--P 716
Cdd:PTZ00449 632 SPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPfDPKFKEKfyDDYLDAAAKSKETKTTVVLDESFESILKETLPetP 711
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 717 GTP-----QLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQP----MTAPPSQ 787
Cdd:PTZ00449 712 GTPfttprPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFFHETPADTPLPDILAEEFKEEdihaETGEPDE 791
|
330 340
....*....|....*....|
gi 568931827 788 SSAQPHpQPSLHSQGPPGPH 807
Cdd:PTZ00449 792 AMKRPD-SPSEHEDKPPGDH 810
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
519-753 |
1.37e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 46.64 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 519 EEDDGLSGKHSMRTRRSRGSGQMSTLRSGRKKQPTSPDGRA--SPINEDIRS---SGRNS----PSAASTSSNDSKaetv 589
Cdd:PRK14949 562 ESYNALSDDEQHSANVQSAQSAAEAQPSSQSLSPISAVTTAaaSLADDDILDavlAARDSllsdLDALSPKEGDGK---- 637
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 590 kKSAKKVKEEAAsPLKSTKRQREKVASDTEdtdriTSKKTKTQEISRPNSPSEGEGESSDSRSVNdEGSSDPKDIDQDNR 669
Cdd:PRK14949 638 -KSSADRKPKTP-PSRAPPASLSKPASSPD-----ASQTSASFDLDPDFELATHQSVPEAALASG-SAPAPPPVPDPYDR 709
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 670 stsPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQ 749
Cdd:PRK14949 710 ---PPWEEAPEVASANDGPNNAAEGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTELNLV 786
|
....
gi 568931827 750 STVA 753
Cdd:PRK14949 787 LLSS 790
|
|
| Myb_DNA-binding |
pfam00249 |
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ... |
354-397 |
1.86e-04 |
|
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.
Pssm-ID: 459731 [Multi-domain] Cd Length: 46 Bit Score: 40.56 E-value: 1.86e-04
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 568931827 354 WTEDEVKRFVKGLRQYGKNFFRIrKELLPSKETGELITFYYYWK 397
Cdd:pfam00249 4 WTPEEDELLLEAVEKLGNRWKKI-AKLLPGRTDNQCKNRWQNYL 46
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
695-815 |
2.35e-04 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 45.86 E-value: 2.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 695 QAQPPALQAPSGAASAPSTAPPGTPQLPTQGPT---PSATAVPPQGSPATSQPPNqtQSTVAPAAHTHIQQAPTLHPPRL 771
Cdd:PRK14951 387 AAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAaapPAPVAAPAAAAPAAAPAAA--PAAVALAPAPPAQAAPETVAIPV 464
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 568931827 772 PSPHPPLQPMTAPPSqssaQPHPQPSLHSQGPPGPHSLQTGPLL 815
Cdd:PRK14951 465 RVAPEPAVASAAPAP----AAAPAAARLTPTEEGDVWHATVQQL 504
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
538-689 |
2.61e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 45.67 E-value: 2.61e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 538 SGQMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASD 617
Cdd:NF033609 628 SDSASDSDSASDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 707
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568931827 618 TE-DTDRITSKKTKTQEISRPNSPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 689
Cdd:NF033609 708 SDsDSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 780
|
|
| MSCRAMM_ClfA |
NF033609 |
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial ... |
538-689 |
3.66e-04 |
|
MSCRAMM family adhesin clumping factor ClfA; Clumping factor A is an MSCRAMM (Microbial Surface Components Recognizing Adhesive Matrix Molecules). It is heavily studied in Staphylococcus aureus both for its biological role in adhesion and for its potential for vaccination. Features of the sequence, but also of other MSCRAMM adhesins, include a long run of Ser-Asp dipeptide repeats and a C-terminal cell wall anchoring LPXTG motif.
Pssm-ID: 468110 [Multi-domain] Cd Length: 934 Bit Score: 45.29 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 538 SGQMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASD 617
Cdd:NF033609 652 SDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSDSD 731
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568931827 618 TeDTDRITSKKTKTQEISRPNSPSEGEGES-SDSRSVNDEGSSDPKDIDQDNRSTSPSiPSPQDNESDSDSSA 689
Cdd:NF033609 732 S-DSDSDSDSDSDSDSDSDSDSDSDSDSDSdSDSDSDSDSDSDSDSDSDSDSDSDSDS-DSDSDSDSDSDSDS 802
|
|
| PRK10905 |
PRK10905 |
cell division protein DamX; Validated |
639-855 |
3.95e-04 |
|
cell division protein DamX; Validated
Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 44.54 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 639 SPSEGEGESSDSRSVNDEGSSDpkdiDQDNRSTspsiPSP-QDNESDSDSSAQQQMlqAQPPALQAPSGAASAPstAPPG 717
Cdd:PRK10905 24 STSSSDQTASGEKSIDLAGNAT----DQANGVQ----PAPgTTSAEQTAGNTQQDV--SLPPISSTPTQGQTPV--ATDG 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 718 TPQLPTQG------------------------PTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPS 773
Cdd:PRK10905 92 QQRVEVQGdlnnaltqpqnqqqlnnvavnstlPTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQAT 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 774 PHPPLQPMTAPP--SQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQ 851
Cdd:PRK10905 172 AKTEPKPVAQTPkrTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTAGNVGSLKSAPSSHYTLQ 251
|
....
gi 568931827 852 LPAS 855
Cdd:PRK10905 252 LSSS 255
|
|
| dnaA |
PRK14086 |
chromosomal replication initiator protein DnaA; |
669-840 |
4.25e-04 |
|
chromosomal replication initiator protein DnaA;
Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 44.82 E-value: 4.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 669 RSTSPSIPSPQDNESDSDSSAQQQMLQAQP--PALQAPSGAASAPSTAPPGTPQLPTQGPTPSAtavpPQGSPATSQPPn 746
Cdd:PRK14086 115 RRPYEGYGGPRADDRPPGLPRQDQLPTARPayPAYQQRPEPGAWPRAADDYGWQQQRLGFPPRA----PYASPASYAPE- 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 747 qtQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQpmtaPPSQSSAQPHPQPS---LHSQGPPGPHSLQTGPLLQHPGPPQP 823
Cdd:PRK14086 190 --QERDREPYDAGRPEYDQRRRDYDHPRPDWDR----PRRDRTDRPEPPPGaghVHRGGPGPPERDDAPVVPIRPSAPGP 263
|
170
....*....|....*..
gi 568931827 824 FglPSQPSQGQGPLGPS 840
Cdd:PRK14086 264 L--AAQPAPAPGPGEPT 278
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
685-973 |
5.58e-04 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 44.64 E-value: 5.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 685 SDSSAQQQML-QAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATA------------------------VPPQGSP 739
Cdd:pfam09770 92 SDAIEEEQVRfNRQQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVrtgyekykepepipdlqvdaslwgVAPKKAA 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 740 ATSQPPnqtqsTVAPAAHTHIQQAPTLHPPRLPSPHPPLQpmTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPG 819
Cdd:pfam09770 172 APAPAP-----QPAAQPASLPAPSRKMMSLEEVEAAMRAQ--AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQ 244
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 820 PPQPFGLPSQPSQGQGplgpspaaaHPHSTIQLPASQSAlqpqqppreqplppaplamphikPPPTTPIPQLPAPQAHKH 899
Cdd:pfam09770 245 QPQQQPQQPQQHPGQG---------HPVTILQRPQSPQP-----------------------DPAQPSIQPQAQQFHQQP 292
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568931827 900 PPHLSGPSPFSLNANLPPPPALKPLSslsthhppsahppplQLMPQSQPLPSSPAQPPGltQSQSLPPPAASHP 973
Cdd:pfam09770 293 PPVPVQPTQILQNPNRLSAARVGYPQ---------------NPQPGVQPAPAHQAHRQQ--GSFGRQAPIITHP 349
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
673-836 |
5.69e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 44.47 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 673 PSIPSPQDNESD----SDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQgspATSQPPNQT 748
Cdd:PRK07994 361 PAAPLPEPEVPPqsaaPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQ---LQRAQGATK 437
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 749 QSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPS 828
Cdd:PRK07994 438 AKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLA 517
|
....*...
gi 568931827 829 QPSQGQGP 836
Cdd:PRK07994 518 AEAIERDP 525
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
661-829 |
7.39e-04 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 44.29 E-value: 7.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 661 PKDIDQDNRSTSPSIPSPQDNESDSDSSAQQqMLQAQPPALQAPSGAAS--APSTAPPGTPQLPTQGPTPsatAVPPQGS 738
Cdd:PHA03378 655 PQVEITPYKPTWTQIGHIPYQPSPTGANTML-PIQWAPGTMQPPPRAPTpmRPPAAPPGRAQRPAAATGR---ARPPAAA 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 739 PATSQPPNQTQSTVAP--AAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQ 816
Cdd:PHA03378 731 PGRARPPAAAPGRARPpaAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLM 810
|
170
....*....|...
gi 568931827 817 HPGPPQPFGLPSQ 829
Cdd:PHA03378 811 PRAAPGQQGPTKQ 823
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
699-1044 |
8.84e-04 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 44.16 E-value: 8.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 699 PALQAPSGAASaPStAPPGTPQlPTQGPTPSATAVPPQGSPATSQPPNQTQ-STVAPAAHTHIQQAPTLHPPRLPSPHPP 777
Cdd:PHA03247 2478 PVYRRPAEARF-PF-AAGAAPD-PGGGGPPDPDAPPAPSRLAPAILPDEPVgEPVHPRMLTWIRGLEELASDDAGDPPPP 2554
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 778 LQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAH--------PHST 849
Cdd:PHA03247 2555 LPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHapdppppsPSPA 2634
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 850 IQLPASQSALQPQQPPREQPLPPAPLAMPHIKPPPTTPIPQLPAPQAHKHPPHLSGP-SPFSLNANLPPPPALKPLSSLS 928
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTvGSLTSLADPPPPPPTPEPAPHA 2714
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 929 THHPPSAHPPPLQLMPQSQPLPSSPAQP--------PGLTQSQSLPPPAASHPTTGLHQVPSQSPFPQHPfvpGGPPPIT 1000
Cdd:PHA03247 2715 LVSATPLPPGPAAARQASPALPAAPAPPavpagpatPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT---RPAVASL 2791
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568931827 1001 PPSCPPTSTPPAGPSSSSQPPCSAAVSSGGSVPGAPSCPLPAVQ 1044
Cdd:PHA03247 2792 SESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQ 2835
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
651-763 |
9.22e-04 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 43.61 E-value: 9.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 651 RSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPAlqAPSGAASAPSTAPPGTPQLPTQGPTPSA 730
Cdd:PRK14971 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPS--APQSATQPAGTPPTVSVDPPAAVPVNPP 440
|
90 100 110
....*....|....*....|....*....|....*..
gi 568931827 731 TAVPPQGSPATSQPPNQ----TQSTVAPAAHTHIQQA 763
Cdd:PRK14971 441 STAPQAVRPAQFKEEKKipvsKVSSLGPSTLRPIQEK 477
|
|
| PRK11901 |
PRK11901 |
hypothetical protein; Reviewed |
658-857 |
1.05e-03 |
|
hypothetical protein; Reviewed
Pssm-ID: 237015 [Multi-domain] Cd Length: 327 Bit Score: 43.13 E-value: 1.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 658 SSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQ---LPTQGPTPSATAVP 734
Cdd:PRK11901 55 GSALKSPTEHESQQSSNNAGAEKNIDLSGSSSLSSGNQSSPSAANNTSDGHDASGVKNTAPPQdisAPPISPTPTQAAPP 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 735 PQgsPATSQ----PPN------QTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSlhSQGPP 804
Cdd:PRK11901 135 QT--PNGQQrielPGNisdalsQQQGQVNAASQNAQGNTSTLPTAPATVAPSKGAKVPATAETHPTPPQKPAT--KKPAV 210
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568931827 805 GPHSLQTGPllQHPGPpqpfglPSQPSQGQGPLGPSPAAAHPHSTIQLP-ASQS 857
Cdd:PRK11901 211 NHHKTATVA--VPPAT------SGKPKSGAASARALSSAPASHYTLQLSsASRS 256
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
671-853 |
1.11e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 43.71 E-value: 1.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 671 TSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQ----GSPATSQPPN 746
Cdd:PRK12323 400 AAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAaagpRPVAAAAAAA 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 747 QTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQT---GPLLQHPGPPQP 823
Cdd:PRK12323 480 PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPApaaAPAPRAAAATEP 559
|
170 180 190
....*....|....*....|....*....|
gi 568931827 824 FGLPSQPSQGQGPLGPSPAAAHPHSTIQLP 853
Cdd:PRK12323 560 VVAPRPPRASASGLPDMFDGDWPALAARLP 589
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
693-859 |
1.31e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 43.16 E-value: 1.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 693 MLQAQPP-ALQAPSGAASAPSTAPPgtpqlptqGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTlhpprl 771
Cdd:PRK14951 361 LLAFKPAaAAEAAAPAEKKTPARPE--------AAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPV------ 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 772 PSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPllqHPGPPQPFGLPSQPSQgQGPLGPSPAAAHPHSTIQ 851
Cdd:PRK14951 427 AAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAP---EPAVASAAPAPAAAPA-AARLTPTEEGDVWHATVQ 502
|
....*...
gi 568931827 852 LPASQSAL 859
Cdd:PRK14951 503 QLAAAEAI 510
|
|
| PRK13042 |
PRK13042 |
superantigen-like protein SSL4; Reviewed; |
670-747 |
1.53e-03 |
|
superantigen-like protein SSL4; Reviewed;
Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 42.31 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 670 STSPSIPSPQDNESDSDSSAQQQMLQAQPPALQAPSGAASAPSTAPPGT----PQLPTQGPTPSATAVPPQGSPATSQPP 745
Cdd:PRK13042 17 TTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTkveaPQQTPNATTPSSTKVETPQSPTTKQVP 96
|
..
gi 568931827 746 NQ 747
Cdd:PRK13042 97 TE 98
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
721-858 |
1.53e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.05 E-value: 1.53e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 721 LPTQGPTPSATAVPPQGSPAtSQPPNQTQSTVAPAAhthiqqaptlhpprlpsphpplqpMTAPPSQSSAQPHPQPSLHS 800
Cdd:PRK07764 385 LGVAGGAGAPAAAAPSAAAA-APAAAPAPAAAAPAA------------------------AAAPAPAAAPQPAPAPAPAP 439
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568931827 801 QGPPGPHSLQTGPLLQHP----GPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQSA 858
Cdd:PRK07764 440 APPSPAGNAPAGGAPSPPpaaaPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPA 501
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
565-859 |
1.83e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 43.18 E-value: 1.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 565 DIRSSGRNSPSAASTSSNDSKAETVKKSAKKVKEEAASPLKSTKRQREK-VASDTEDTDRITSKKTKTQEISRPNSPSEG 643
Cdd:PRK14949 482 NSAVPEQIDSTAEQSVVNPSVTDTQVDDTSASNNSAADNTVDDNYSAEDtLESNGLDEGDYAQDSAPLDAYQDDYVAFSS 561
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 644 EGESSDSRSVNDEGSSDPKdidQDNRSTSPSIPSPQDNE---SDSDSSAQQQMLQA----------QPPALQAPSGAASA 710
Cdd:PRK14949 562 ESYNALSDDEQHSANVQSA---QSAAEAQPSSQSLSPISavtTAAASLADDDILDAvlaardsllsDLDALSPKEGDGKK 638
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 711 PSTA--PPGTPQLPTQGPTPSATAVPP--QGSPATSQPPNQTQSTV--APAAHTHIQQAPTLHPPRLPSPHPplqPMTAP 784
Cdd:PRK14949 639 SSADrkPKTPPSRAPPASLSKPASSPDasQTSASFDLDPDFELATHqsVPEAALASGSAPAPPPVPDPYDRP---PWEEA 715
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568931827 785 PSQSSAQPHPQPSLHSQGPPGPHSLQTGPLlqHPGPPQPFGLPSQPSQGQGPlGPSPAAAHPHSTIQLPASQSAL 859
Cdd:PRK14949 716 PEVASANDGPNNAAEGNLSESVEDASNSEL--QAVEQQATHQPQVQAEAQSP-ASTTALTQTSSEVQDTELNLVL 787
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
696-785 |
2.06e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 42.49 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 696 AQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSAtavPPQGSPATsqPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPH 775
Cdd:PRK14950 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK---EPVRETAT--PPPVPPRPVAPPVPHTPESAPKLTRAAIPVDE 440
|
90
....*....|
gi 568931827 776 PPLQPMTAPP 785
Cdd:PRK14950 441 KPKYTPPAPP 450
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
705-820 |
2.31e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 42.41 E-value: 2.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 705 SGAASAPSTAPpgTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTlhpprlPSPHPPLQPMTAP 784
Cdd:PHA03269 17 LIIANLNTNIP--IPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPT------PAASEKFDPAPAP 88
|
90 100 110
....*....|....*....|....*....|....*...
gi 568931827 785 PSQSSAQPHPQ--PSLHSQGPPGPHSLQTGPLLQHPGP 820
Cdd:PHA03269 89 HQAASRAPDPAvaPQLAAAPKPDAAEAFTSAAQAHEAP 126
|
|
| BAH_plant_3 |
cd04713 |
BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH ... |
105-208 |
3.99e-03 |
|
BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Pssm-ID: 240064 Cd Length: 146 Bit Score: 39.37 E-value: 3.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 105 YRPGDCVYIESRRPNTPYfICSIQDFKLSKRDHLLMNVKWYYRQSEVpdsvyqhlvqdrhnENDSGRELVITDPviknRE 184
Cdd:cd04713 21 YRLEDCVLLVPEDDQKPY-IAIIKDIYKQEEGSLKLEVQWLYRPEEI--------------EKKKGGNWKAEDP----RE 81
|
90 100
....*....|....*....|....
gi 568931827 185 LFISDYVDTYHAAALRGKCnISHF 208
Cdd:cd04713 82 LFYSFHRDEVPAESVLHPC-KVAF 104
|
|
| DUF5585 |
pfam17823 |
Family of unknown function (DUF5585); This is a family of unknown function found in chordata. |
554-797 |
4.27e-03 |
|
Family of unknown function (DUF5585); This is a family of unknown function found in chordata.
Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.48 E-value: 4.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 554 SPDGRASPINEDIRSSGRNSPSAASTSSNDSKaeTVKKSAKKVKEEAASPLKSTKRQREKVASDTEDTDRITSKKTKTQE 633
Cdd:pfam17823 22 PADPRHFVLNKMWNGAGKQNASGDAVPRADNK--SSEQ*NFCAATAAPAPVTLTKGTSAAHLNSTEVTAEHTPHGTDLSE 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 634 isrpNSPSEGEGESSDSRSVNDEGSSDPKDIDQDNRSTSPSIPSpqdnESDSDSSAQQqmlqAQPPALQAPSGAASAPST 713
Cdd:pfam17823 100 ----PATREGAADGAASRALAAAASSSPSSAAQSLPAAIAALPS----EAFSAPRAAA----CRANASAAPRAAIAAASA 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 714 APPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPH 793
Cdd:pfam17823 168 PHAASPAPRTAASSTTAASSTTAASSAPTTAASSAPATLTPARGISTAATATGHPAAGTALAAVGNSSPAAGTVTAAVGT 247
|
....
gi 568931827 794 PQPS 797
Cdd:pfam17823 248 VTPA 251
|
|
| PHA03269 |
PHA03269 |
envelope glycoprotein C; Provisional |
728-848 |
4.54e-03 |
|
envelope glycoprotein C; Provisional
Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 41.64 E-value: 4.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 728 PSATAVPPQGSPATSQPPNQtqstvAPAAHTHIQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPH 807
Cdd:PHA03269 23 NTNIPIPELHTSAATQKPDP-----APAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFDPAPAPHQAASRAPD 97
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 568931827 808 SLQTGPLLQHPGPPQPFGLPSQPSQGQGPL---------GPSPAAAHPHS 848
Cdd:PHA03269 98 PAVAPQLAAAPKPDAAEAFTSAAQAHEAPAdagtsaaskKPDPAAHTQHS 147
|
|
| kgd |
PRK12270 |
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ... |
697-785 |
4.61e-03 |
|
multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;
Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 41.80 E-value: 4.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 697 QPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPqGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSPHP 776
Cdd:PRK12270 37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPP-AAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115
|
....*....
gi 568931827 777 PLQPMTAPP 785
Cdd:PRK12270 116 EVTPLRGAA 124
|
|
| PRK08581 |
PRK08581 |
amidase domain-containing protein; |
553-815 |
4.66e-03 |
|
amidase domain-containing protein;
Pssm-ID: 236304 [Multi-domain] Cd Length: 619 Bit Score: 41.31 E-value: 4.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 553 TSPDGRASPINEDIRSSGRNSPSAASTSsNDSKAETVKKSAKKVKEEAASPLKSTKRQREKVASDTEDTDRITS---KKT 629
Cdd:PRK08581 21 TSPTAYADDPQKDSTAKTTSHDSKKSND-DETSKDTSSKDTDKADNNNTSNQDNNDKKFSTIDSSTSDSNNIIDfiyKNL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 630 KTQEISRPNSPSEGEGESSDSRSVNDEGSSDpKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQMLQAQPPAL----QAPS 705
Cdd:PRK08581 100 PQTNINQLLTKNKYDDNYSLTTLIQNLFNLN-SDISDYEQPRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKadnqKAPS 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 706 GAASAPST-------APPGTPQLPTQGPTPSATAVPPQGS--------------------PATSQPPNQTQSTVAPAAHT 758
Cdd:PRK08581 179 SNNTKPSTsnkqpnsPKPTQPNQSNSQPASDDTANQKSSSkdnqsmsdsaldsildqyseDAKKTQKDYASQSKKDKTET 258
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 568931827 759 HIQQAPTLHPPRLPSPhpplqpmTAPPSQSSAQPHPQPSLHSQgppgpHSLQTGPLL 815
Cdd:PRK08581 259 SNTKNPQLPTQDELKH-------KSKPAQSFENDVNQSNTRST-----SLFETGPSL 303
|
|
| PAT1 |
pfam09770 |
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ... |
720-991 |
4.68e-03 |
|
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.
Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 41.56 E-value: 4.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 720 QLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPA-----AHTHIQQAPTLhpprlpsphpplQPM-----TAPPSQSS 789
Cdd:pfam09770 105 QQPAARAAQSSAQPPASSLPQYQYASQQSQQPSKPVrtgyeKYKEPEPIPDL------------QVDaslwgVAPKKAAA 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 790 AQPHPQPSLHSQGPPGPH----SLQ----------TGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPAS 855
Cdd:pfam09770 173 PAPAPQPAAQPASLPAPSrkmmSLEeveaamraqaKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQ 252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 856 QsalqpqqppreqplppaplamphikpppttpipqlPAPQAHKHPPHLsgpspfslnanlppppalkplsslsthhppsa 935
Cdd:pfam09770 253 P-----------------------------------QQHPGQGHPVTI-------------------------------- 265
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 936 hpppLQLMPQSQPLPSSPAQPPGLTQSQSLPPPAASHPTTGLH----QVPSQSPFPQHPF 991
Cdd:pfam09770 266 ----LQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQPTQILQnpnrLSAARVGYPQNPQ 321
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
676-856 |
5.81e-03 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 41.15 E-value: 5.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 676 PSPQDNESDSDSSAQQQML-QAQPPALQAPSG-------AASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPA------- 740
Cdd:pfam09606 229 MNPQQMGGAPNQVAMQQQQpQQQGQQSQLGMGinqmqqmPQGVGGGAGQGGPGQPMGPPGQQPGAMPNVMSIGdqnnyqq 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 741 -TSQPPNQTQSTVAPAAHTH-----IQQAPTLHPPRLPSPHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSL--QTG 812
Cdd:pfam09606 309 qQTRQQQQQQGGNHPAAHQQqmnqsVGQGGQVVALGGLNHLETWNPGNFGGLGANPMQRGQPGMMSSPSPVPGQQvrQVT 388
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 568931827 813 PLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHSTIQLPASQ 856
Cdd:pfam09606 389 PNQFMRQSPQPSVPSPQGPGSQPPQSHPGGMIPSPALIPSPSPQ 432
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
687-844 |
5.95e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 41.37 E-value: 5.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 687 SSAQQQMLQAQPPALQAPSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHThiqqaptl 766
Cdd:PRK07003 413 KAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDA-------- 484
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568931827 767 hpprlpsphppLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAA 844
Cdd:PRK07003 485 -----------PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAARAGGAAA 551
|
|
| rad23 |
TIGR00601 |
UV excision repair protein Rad23; All proteins in this family for which functions are known ... |
610-742 |
6.07e-03 |
|
UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 40.65 E-value: 6.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 610 QREKVASDTEDTDRITSKKTKTQ-EISRPNSPSEGEGESSDSRSVNDEGSSDPKDIDQDN---------RSTSPSIPSPQ 679
Cdd:TIGR00601 9 QQQKFKIDMEPDETVKELKEKIEaEQGKDAYPVAQQKLIYSGKILSDDKTVKEYKIKEKDfvvvmvskpKTGTGKVAPPA 88
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568931827 680 DNESDSDSSAqqqmlqAQPPALQAPSGAASAPSTAPPGTP---QLPTQGPTPSATAVPPQGSPATS 742
Cdd:TIGR00601 89 ATPTSAPTPT------PSPPASPASGMSAAPASAVEEKSPseeSATATAPESPSTSVPSSGSDAAS 148
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
494-668 |
6.36e-03 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 41.19 E-value: 6.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 494 FKKYGELPPIEKPVDPPPFMFKPVKEEDDglsgKHSMRTRRSRGSGQMSTLRSGRKKQPTSPDGRASPINEDIRSSGRNS 573
Cdd:PTZ00108 1223 SDQEDDEEQKTKPKKSSVKRLKSKKNNSS----KSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNG 1298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 574 PSAASTSSNDSKAETVKKSAKKVKEeaasPLKSTKRQREKVASDTEDTDRITSKKTKTQEISRPNSPSEGEgESSDSRSV 653
Cdd:PTZ00108 1299 GSKPSSPTKKKVKKRLEGSLAALKK----KKKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSS-EDDDDSEV 1373
|
170
....*....|....*
gi 568931827 654 NDEGSSDPKDIDQDN 668
Cdd:PTZ00108 1374 DDSEDEDDEDDEDDD 1388
|
|
| PRK10856 |
PRK10856 |
cytoskeleton protein RodZ; |
687-790 |
7.58e-03 |
|
cytoskeleton protein RodZ;
Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 40.39 E-value: 7.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 687 SSAQ--QQMLQAQPPALQAPSGAASAPSTAPPGTPQlPTQGPTPSATAVP-PQGSPATSQPPNQTQSTVAPAAHThiQQA 763
Cdd:PRK10856 150 SSAElsQNSGQSVPLDTSTTTDPATTPAPAAPVDTT-PTNSQTPAVATAPaPAVDPQQNAVVAPSQANVDTAATP--APA 226
|
90 100
....*....|....*....|....*..
gi 568931827 764 PTLHPPRLPSPHPPLQPMTAPPSQSSA 790
Cdd:PRK10856 227 APATPDGAAPLPTDQAGVSTPAADPNA 253
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
704-849 |
7.62e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 41.00 E-value: 7.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 704 PSGAASAPSTAPPGTPQLPTQGPTPSATAVPPQGSPATSQPPNQTQSTVAPAAHTHIQQAPTLHPPRLPSphpplqpmta 783
Cdd:PRK07994 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQ---------- 430
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568931827 784 PPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQPFGLPSQPSQGQGPLGPSPAAAHPHST 849
Cdd:PRK07994 431 RAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVAT 496
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
684-789 |
7.89e-03 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 40.91 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 684 DSDSSAQQQMLQAQPPALQAPSgAASAPSTAPPGTPQLPTQGPTPSatavPPQGSPATSQPPNQTQSTVAPAAHTHIQQA 763
Cdd:PRK14971 366 GDDASGGRGPKQHIKPVFTQPA-AAPQPSAAAAASPSPSQSSAAAQ----PSAPQSATQPAGTPPTVSVDPPAAVPVNPP 440
|
90 100
....*....|....*....|....*.
gi 568931827 764 PTLHPPRLPSPHPPLQPMtaPPSQSS 789
Cdd:PRK14971 441 STAPQAVRPAQFKEEKKI--PVSKVS 464
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
696-822 |
9.43e-03 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 40.43 E-value: 9.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931827 696 AQPPALQAPSGAAS--APSTAPPGtpQLPTQGPTPSATAVPPQGSPATSQPpnqtqsTVAPAAHTHIQQAPtlhpPRLPS 773
Cdd:PRK14959 378 ASAPSGSAAEGPASggAATIPTPG--TQGPQGTAPAAGMTPSSAAPATPAP------SAAPSPRVPWDDAP----PAPPR 445
|
90 100 110 120
....*....|....*....|....*....|....*....|....*....
gi 568931827 774 PHPPLQPMTAPPSQSSAQPHPQPSLHSQGPPGPHSLQTGPLLQHPGPPQ 822
Cdd:PRK14959 446 SGIPPRPAPRMPEASPVPGAPDSVASASDAPPTLGDPSDTAEHTPSGPR 494
|
|
| |
