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Conserved domains on  [gi|568927268|ref|XP_006538263|]
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cilia- and flagella-associated protein 418 isoform X1 [Mus musculus]

Protein Classification

RMP domain-containing protein( domain architecture ID 10633200)

RMP domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RMP pfam14996
Retinal Maintenance; RMP is encoded for by a gene, C8orf37. Mutations in the gene cause two ...
 53-135 8.03e-59

Retinal Maintenance; RMP is encoded for by a gene, C8orf37. Mutations in the gene cause two types of retinal dystrophies: cone-rod dystrophy type 16 (CORD16) and retinitis pigmentosa type 64 (RP64). CORD16 affects the cone receptors which detect red, green or blue wavelengths of light and RP64 affects the cone receptors first and then the rod receptors. Both of these affect the photo-receptors in the eye leading to colour blindness or blindness respectively.


:

Pssm-ID: 464431  Cd Length: 154  Bit Score: 178.73  E-value: 8.03e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927268   53 RACDRLRCVACDFRIVSYNDYMWDKSCDYLFFRNNMPEFHKLKTKLIEKKGARAYACQCSWRTVEELTDLQTDHQLRWVC 132
Cdd:pfam14996  72 RACDQLRCTACDFRVVSFDDYKWDQSCDYLFFRNNMPDFEKLRAKLKKKPGSRAYACQCSWRSVDELTDLRNDPQLRWVC 151


                  ...
gi 568927268  133 GKH 135
Cdd:pfam14996 152 GKH 154
 
Name Accession Description Interval E-value
RMP pfam14996
Retinal Maintenance; RMP is encoded for by a gene, C8orf37. Mutations in the gene cause two ...
 53-135 8.03e-59

Retinal Maintenance; RMP is encoded for by a gene, C8orf37. Mutations in the gene cause two types of retinal dystrophies: cone-rod dystrophy type 16 (CORD16) and retinitis pigmentosa type 64 (RP64). CORD16 affects the cone receptors which detect red, green or blue wavelengths of light and RP64 affects the cone receptors first and then the rod receptors. Both of these affect the photo-receptors in the eye leading to colour blindness or blindness respectively.


Pssm-ID: 464431  Cd Length: 154  Bit Score: 178.73  E-value: 8.03e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927268   53 RACDRLRCVACDFRIVSYNDYMWDKSCDYLFFRNNMPEFHKLKTKLIEKKGARAYACQCSWRTVEELTDLQTDHQLRWVC 132
Cdd:pfam14996  72 RACDQLRCTACDFRVVSFDDYKWDQSCDYLFFRNNMPDFEKLRAKLKKKPGSRAYACQCSWRSVDELTDLRNDPQLRWVC 151


                  ...
gi 568927268  133 GKH 135
Cdd:pfam14996 152 GKH 154
 
Name Accession Description Interval E-value
RMP pfam14996
Retinal Maintenance; RMP is encoded for by a gene, C8orf37. Mutations in the gene cause two ...
 53-135 8.03e-59

Retinal Maintenance; RMP is encoded for by a gene, C8orf37. Mutations in the gene cause two types of retinal dystrophies: cone-rod dystrophy type 16 (CORD16) and retinitis pigmentosa type 64 (RP64). CORD16 affects the cone receptors which detect red, green or blue wavelengths of light and RP64 affects the cone receptors first and then the rod receptors. Both of these affect the photo-receptors in the eye leading to colour blindness or blindness respectively.


Pssm-ID: 464431  Cd Length: 154  Bit Score: 178.73  E-value: 8.03e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568927268   53 RACDRLRCVACDFRIVSYNDYMWDKSCDYLFFRNNMPEFHKLKTKLIEKKGARAYACQCSWRTVEELTDLQTDHQLRWVC 132
Cdd:pfam14996  72 RACDQLRCTACDFRVVSFDDYKWDQSCDYLFFRNNMPDFEKLRAKLKKKPGSRAYACQCSWRSVDELTDLRNDPQLRWVC 151


                  ...
gi 568927268  133 GKH 135
Cdd:pfam14996 152 GKH 154
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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