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Conserved domains on  [gi|568976412|ref|XP_006534561|]
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protein IL-40 isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ig_C17orf99 pfam17736
C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein ...
 23-117 2.87e-43

C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein C17orf99, which is found across mammalian species.


:

Pssm-ID: 465476  Cd Length: 95  Bit Score: 144.18  E-value: 2.87e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976412   23 EGITIAYKVLEVYPQSRRVLITCDAPEASQPITYSLLASRGILVAKKVVHDSVPASFNINITIKSSPDLLTYSCQATSNS 102
Cdd:pfam17736   1 PVSQIAYKVLEVFPSGRRVLISCHASQGSPPITYSLVGSDGIVVAKKIPLHGEPANFSLNITLKSSPDLLTYQCQAANTS 80

                          90
                  ....*....|....*
gi 568976412  103 GTYGPSSRLQMYQEL 117
Cdd:pfam17736  81 GTQVSSLRLQPPWEL 95
Ig_C17orf99 super family cl39263
C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein ...
 121-212 8.36e-36

C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein C17orf99, which is found across mammalian species.


The actual alignment was detected with superfamily member pfam17736:

Pssm-ID: 465476  Cd Length: 95  Bit Score: 124.53  E-value: 8.36e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976412  121 PVSQLqADFVLRHGDSGPTVELSCLASSGSPPITYRLVGNGGRVLAQQRPLHGKPANFSLPLSQTT----GWFQCEAEND 196
Cdd:pfam17736   1 PVSQI-AYKVLEVFPSGRRVLISCHASQGSPPITYSLVGSDGIVVAKKIPLHGEPANFSLNITLKSspdlLTYQCQAANT 79

                          90
                  ....*....|....*.
gi 568976412  197 VGVDSSARIPLPRGEL 212
Cdd:pfam17736  80 SGTQVSSLRLQPPWEL 95
 
Name Accession Description Interval E-value
Ig_C17orf99 pfam17736
C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein ...
 23-117 2.87e-43

C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein C17orf99, which is found across mammalian species.


Pssm-ID: 465476  Cd Length: 95  Bit Score: 144.18  E-value: 2.87e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976412   23 EGITIAYKVLEVYPQSRRVLITCDAPEASQPITYSLLASRGILVAKKVVHDSVPASFNINITIKSSPDLLTYSCQATSNS 102
Cdd:pfam17736   1 PVSQIAYKVLEVFPSGRRVLISCHASQGSPPITYSLVGSDGIVVAKKIPLHGEPANFSLNITLKSSPDLLTYQCQAANTS 80

                          90
                  ....*....|....*
gi 568976412  103 GTYGPSSRLQMYQEL 117
Cdd:pfam17736  81 GTQVSSLRLQPPWEL 95
Ig_C17orf99 pfam17736
C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein ...
 121-212 8.36e-36

C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein C17orf99, which is found across mammalian species.


Pssm-ID: 465476  Cd Length: 95  Bit Score: 124.53  E-value: 8.36e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976412  121 PVSQLqADFVLRHGDSGPTVELSCLASSGSPPITYRLVGNGGRVLAQQRPLHGKPANFSLPLSQTT----GWFQCEAEND 196
Cdd:pfam17736   1 PVSQI-AYKVLEVFPSGRRVLISCHASQGSPPITYSLVGSDGIVVAKKIPLHGEPANFSLNITLKSspdlLTYQCQAANT 79

                          90
                  ....*....|....*.
gi 568976412  197 VGVDSSARIPLPRGEL 212
Cdd:pfam17736  80 SGTQVSSLRLQPPWEL 95
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 139-202 1.89e-03

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 36.71  E-value: 1.89e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976412   139 TVELSCLASsGSPPITYRLVGNGGRVLAQQR--PLHGKPANFSLPLSQTT----GWFQCEAENDVGVDSS 202
Cdd:smart00410  11 SVTLSCEAS-GSPPPEVTWYKQGGKLLAESGrfSVSRSGSTSTLTISNVTpedsGTYTCAATNSSGSASS 79
 
Name Accession Description Interval E-value
Ig_C17orf99 pfam17736
C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein ...
 23-117 2.87e-43

C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein C17orf99, which is found across mammalian species.


Pssm-ID: 465476  Cd Length: 95  Bit Score: 144.18  E-value: 2.87e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976412   23 EGITIAYKVLEVYPQSRRVLITCDAPEASQPITYSLLASRGILVAKKVVHDSVPASFNINITIKSSPDLLTYSCQATSNS 102
Cdd:pfam17736   1 PVSQIAYKVLEVFPSGRRVLISCHASQGSPPITYSLVGSDGIVVAKKIPLHGEPANFSLNITLKSSPDLLTYQCQAANTS 80

                          90
                  ....*....|....*
gi 568976412  103 GTYGPSSRLQMYQEL 117
Cdd:pfam17736  81 GTQVSSLRLQPPWEL 95
Ig_C17orf99 pfam17736
C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein ...
 121-212 8.36e-36

C17orf99 Ig domain; This Ig domain is found in tandem in the uncharacterized human protein C17orf99, which is found across mammalian species.


Pssm-ID: 465476  Cd Length: 95  Bit Score: 124.53  E-value: 8.36e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976412  121 PVSQLqADFVLRHGDSGPTVELSCLASSGSPPITYRLVGNGGRVLAQQRPLHGKPANFSLPLSQTT----GWFQCEAEND 196
Cdd:pfam17736   1 PVSQI-AYKVLEVFPSGRRVLISCHASQGSPPITYSLVGSDGIVVAKKIPLHGEPANFSLNITLKSspdlLTYQCQAANT 79

                          90
                  ....*....|....*.
gi 568976412  197 VGVDSSARIPLPRGEL 212
Cdd:pfam17736  80 SGTQVSSLRLQPPWEL 95
IG_like smart00410
Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
 139-202 1.89e-03

Immunoglobulin like; IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.


Pssm-ID: 214653 [Multi-domain]  Cd Length: 85  Bit Score: 36.71  E-value: 1.89e-03
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568976412   139 TVELSCLASsGSPPITYRLVGNGGRVLAQQR--PLHGKPANFSLPLSQTT----GWFQCEAENDVGVDSS 202
Cdd:smart00410  11 SVTLSCEAS-GSPPPEVTWYKQGGKLLAESGrfSVSRSGSTSTLTISNVTpedsGTYTCAATNSSGSASS 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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