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Conserved domains on  [gi|1720366375|ref|XP_006533551|]
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zinc finger protein 385C isoform X1 [Mus musculus]

Protein Classification

C2H2-type zinc finger protein( domain architecture ID 10648587)

Cys2His2 (C2H2)-type zinc finger protein may be involved in transcriptional regulation

CATH:  3.30.160.60
Gene Ontology:  GO:0003676|GO:0008270
PubMed:  11179890|11361095|10940247|22803940|12665246
SCOP:  4003583

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 465-489 2.35e-06

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


:

Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 44.02  E-value: 2.35e-06
                          10        20
                  ....*....|....*....|....*
gi 1720366375 465 FHCALCQLHVNSETQLKQHMSSRRH 489
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 247-269 1.51e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


:

Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 41.71  E-value: 1.51e-05
                          10        20
                  ....*....|....*....|...
gi 1720366375 247 CNICHLRFNSANQAEAHYKGHRH 269
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 396-420 1.73e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


:

Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 41.71  E-value: 1.73e-05
                          10        20
                  ....*....|....*....|....*
gi 1720366375 396 LYCPTCKVTVNSASQLQAHNTGAKH 420
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 132-161 1.04e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.04e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1720366375  132 CDVCNIQLNSAAQAQVHCGGRAHQRRLRQL 161
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
 
Name Accession Description Interval E-value
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 465-489 2.35e-06

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 44.02  E-value: 2.35e-06
                          10        20
                  ....*....|....*....|....*
gi 1720366375 465 FHCALCQLHVNSETQLKQHMSSRRH 489
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 247-269 1.51e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 41.71  E-value: 1.51e-05
                          10        20
                  ....*....|....*....|...
gi 1720366375 247 CNICHLRFNSANQAEAHYKGHRH 269
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 396-420 1.73e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 41.71  E-value: 1.73e-05
                          10        20
                  ....*....|....*....|....*
gi 1720366375 396 LYCPTCKVTVNSASQLQAHNTGAKH 420
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 247-274 2.66e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 38.39  E-value: 2.66e-04
                           10        20
                   ....*....|....*....|....*...
gi 1720366375  247 CNICHLRFNSANQAEAHYKGHRHARKLK 274
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 393-421 4.89e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 37.62  E-value: 4.89e-04
                           10        20
                   ....*....|....*....|....*....
gi 1720366375  393 KGRLYCPTCKVTVNSASQLQAHNTGAKHR 421
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHK 29
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 462-494 8.74e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 37.23  E-value: 8.74e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1720366375  462 SPPFHCALCQLHVNSETQLKQHMSSRRHKDRLA 494
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 132-161 1.04e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.04e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1720366375  132 CDVCNIQLNSAAQAQVHCGGRAHQRRLRQL 161
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 132-154 3.82e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 35.16  E-value: 3.82e-03
                          10        20
                  ....*....|....*....|...
gi 1720366375 132 CDVCNIQLNSAAQAQVHCGGRAH 154
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
 
Name Accession Description Interval E-value
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 465-489 2.35e-06

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 44.02  E-value: 2.35e-06
                          10        20
                  ....*....|....*....|....*
gi 1720366375 465 FHCALCQLHVNSETQLKQHMSSRRH 489
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 247-269 1.51e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 41.71  E-value: 1.51e-05
                          10        20
                  ....*....|....*....|...
gi 1720366375 247 CNICHLRFNSANQAEAHYKGHRH 269
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 396-420 1.73e-05

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 41.71  E-value: 1.73e-05
                          10        20
                  ....*....|....*....|....*
gi 1720366375 396 LYCPTCKVTVNSASQLQAHNTGAKH 420
Cdd:pfam12874   1 FYCELCNVTFNSESQLKSHLQGKKH 25
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 464-490 2.23e-04

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 38.69  E-value: 2.23e-04
                          10        20
                  ....*....|....*....|....*..
gi 1720366375 464 PFHCALCQLHVNSETQLKQHMSSRRHK 490
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 247-274 2.66e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 38.39  E-value: 2.66e-04
                           10        20
                   ....*....|....*....|....*...
gi 1720366375  247 CNICHLRFNSANQAEAHYKGHRHARKLK 274
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 393-421 4.89e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 37.62  E-value: 4.89e-04
                           10        20
                   ....*....|....*....|....*....
gi 1720366375  393 KGRLYCPTCKVTVNSASQLQAHNTGAKHR 421
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHK 29
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 395-421 5.82e-04

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 37.53  E-value: 5.82e-04
                          10        20
                  ....*....|....*....|....*..
gi 1720366375 395 RLYCPTCKVTVNSASQLQAHNTGAKHR 421
Cdd:pfam12171   1 QFYCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 462-494 8.74e-04

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 37.23  E-value: 8.74e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 1720366375  462 SPPFHCALCQLHVNSETQLKQHMSSRRHKDRLA 494
Cdd:smart00451   1 TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNVK 33
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 132-161 1.04e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.04e-03
                           10        20        30
                   ....*....|....*....|....*....|
gi 1720366375  132 CDVCNIQLNSAAQAQVHCGGRAHQRRLRQL 161
Cdd:smart00451   6 CKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35
zf-met pfam12874
Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found ...
 132-154 3.82e-03

Zinc-finger of C2H2 type; This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.


Pssm-ID: 463736 [Multi-domain]  Cd Length: 25  Bit Score: 35.16  E-value: 3.82e-03
                          10        20
                  ....*....|....*....|...
gi 1720366375 132 CDVCNIQLNSAAQAQVHCGGRAH 154
Cdd:pfam12874   3 CELCNVTFNSESQLKSHLQGKKH 25
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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